NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F093588

Metagenome Family F093588

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093588
Family Type Metagenome
Number of Sequences 106
Average Sequence Length 106 residues
Representative Sequence SQMFSLLGDIRSRAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDDEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ
Number of Associated Samples 88
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 5.66 %
% of genes near scaffold ends (potentially truncated) 94.34 %
% of genes from short scaffolds (< 2000 bps) 95.28 %
Associated GOLD sequencing projects 81
AlphaFold2 3D model prediction Yes
3D model pTM-score0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.113 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere
(13.207 % of family members)
Environment Ontology (ENVO) Unclassified
(36.792 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(51.887 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 52.24%    β-sheet: 0.00%    Coil/Unstructured: 47.76%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF11154DUF2934 14.15
PF01814Hemerythrin 10.38
PF00072Response_reg 6.60
PF06808DctM 6.60
PF03401TctC 5.66
PF00487FA_desaturase 3.77
PF07940Hepar_II_III 1.89
PF09980DUF2214 1.89
PF07769PsiF_repeat 1.89
PF13628DUF4142 1.89
PF01979Amidohydro_1 0.94
PF00903Glyoxalase 0.94
PF04290DctQ 0.94
PF06629MipA 0.94
PF01066CDP-OH_P_transf 0.94
PF00480ROK 0.94
PF13499EF-hand_7 0.94
PF05187ETF_QO 0.94
PF01266DAO 0.94
PF12244DUF3606 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG3181Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctCEnergy production and conversion [C] 5.66
COG1398Fatty-acid desaturaseLipid transport and metabolism [I] 3.77
COG3239Fatty acid desaturaseLipid transport and metabolism [I] 3.77
COG1940Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domainTranscription [K] 1.89
COG5360Uncharacterized conserved protein, heparinase superfamilyGeneral function prediction only [R] 1.89
COG0558Phosphatidylglycerophosphate synthaseLipid transport and metabolism [I] 0.94
COG0644Dehydrogenase (flavoprotein)Energy production and conversion [C] 0.94
COG1183Phosphatidylserine synthaseLipid transport and metabolism [I] 0.94
COG2440Ferredoxin-like protein FixXEnergy production and conversion [C] 0.94
COG3713Outer membrane scaffolding protein for murein synthesis, MipA/OmpV familyCell wall/membrane/envelope biogenesis [M] 0.94
COG5050sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferasesLipid transport and metabolism [I] 0.94

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.11 %
UnclassifiedrootN/A1.89 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002075|JGI24738J21930_10162126All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria501Open in IMG/M
3300004114|Ga0062593_100756719All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria958Open in IMG/M
3300004156|Ga0062589_100345326All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1178Open in IMG/M
3300004157|Ga0062590_100314294All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales1229Open in IMG/M
3300004463|Ga0063356_103570612All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria670Open in IMG/M
3300004643|Ga0062591_100811059All Organisms → cellular organisms → Bacteria865Open in IMG/M
3300005093|Ga0062594_101192208All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria754Open in IMG/M
3300005294|Ga0065705_10381077All Organisms → cellular organisms → Bacteria → Proteobacteria909Open in IMG/M
3300005328|Ga0070676_10449295All Organisms → cellular organisms → Bacteria → Proteobacteria906Open in IMG/M
3300005338|Ga0068868_101740521All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria588Open in IMG/M
3300005353|Ga0070669_101278710All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria635Open in IMG/M
3300005364|Ga0070673_101286583All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium686Open in IMG/M
3300005406|Ga0070703_10554446All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria524Open in IMG/M
3300005438|Ga0070701_10792255All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria646Open in IMG/M
3300005440|Ga0070705_100776248All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria760Open in IMG/M
3300005444|Ga0070694_101139860All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria652Open in IMG/M
3300005471|Ga0070698_100460154All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1208Open in IMG/M
3300005536|Ga0070697_100151955All Organisms → cellular organisms → Bacteria → Proteobacteria1952Open in IMG/M
3300005536|Ga0070697_100865485All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium801Open in IMG/M
3300005539|Ga0068853_101831555All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria588Open in IMG/M
3300005544|Ga0070686_101029805All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium677Open in IMG/M
3300005547|Ga0070693_101249496All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300005549|Ga0070704_100496207All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1059Open in IMG/M
3300005615|Ga0070702_100481769All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria907Open in IMG/M
3300005615|Ga0070702_101838727All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria507Open in IMG/M
3300006796|Ga0066665_10819520All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria731Open in IMG/M
3300006845|Ga0075421_101046907All Organisms → cellular organisms → Bacteria → Proteobacteria920Open in IMG/M
3300006845|Ga0075421_101150698All Organisms → cellular organisms → Bacteria → Proteobacteria868Open in IMG/M
3300006853|Ga0075420_100398010All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1191Open in IMG/M
3300006876|Ga0079217_11007123All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria610Open in IMG/M
3300006880|Ga0075429_100348974All Organisms → cellular organisms → Bacteria → Proteobacteria1295Open in IMG/M
3300006894|Ga0079215_11432721All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria541Open in IMG/M
3300006969|Ga0075419_10049094All Organisms → cellular organisms → Bacteria → Proteobacteria2650Open in IMG/M
3300007004|Ga0079218_13585051All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria527Open in IMG/M
3300007004|Ga0079218_13595718All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria526Open in IMG/M
3300009012|Ga0066710_101096522All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium1231Open in IMG/M
3300009078|Ga0105106_10951385All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria611Open in IMG/M
3300009137|Ga0066709_102095009All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium782Open in IMG/M
3300009156|Ga0111538_11744464All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300009162|Ga0075423_12812082All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria533Open in IMG/M
3300009162|Ga0075423_12969741All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria520Open in IMG/M
3300010159|Ga0099796_10141633Not Available940Open in IMG/M
3300010337|Ga0134062_10227795All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium859Open in IMG/M
3300010399|Ga0134127_10196198All Organisms → cellular organisms → Bacteria → Proteobacteria1873Open in IMG/M
3300010400|Ga0134122_10100886All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria2286Open in IMG/M
3300010400|Ga0134122_10240874All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1523Open in IMG/M
3300010400|Ga0134122_10507198All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1093Open in IMG/M
3300010400|Ga0134122_13036696All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria524Open in IMG/M
3300010401|Ga0134121_10151053All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → unclassified Comamonadaceae → Comamonadaceae bacterium1981Open in IMG/M
3300010401|Ga0134121_11486318All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium692Open in IMG/M
3300012189|Ga0137388_11560674All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria596Open in IMG/M
3300012232|Ga0137435_1169589All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria670Open in IMG/M
3300012925|Ga0137419_10399992Not Available1073Open in IMG/M
3300012960|Ga0164301_10131233All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1499Open in IMG/M
3300013296|Ga0157374_10257307All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1719Open in IMG/M
3300014326|Ga0157380_12368527All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria596Open in IMG/M
3300018422|Ga0190265_11622689All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria758Open in IMG/M
3300018429|Ga0190272_10009036All Organisms → cellular organisms → Bacteria → Proteobacteria4834Open in IMG/M
3300018429|Ga0190272_11715636All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria651Open in IMG/M
3300018469|Ga0190270_11290118All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria772Open in IMG/M
3300019361|Ga0173482_10335871All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium679Open in IMG/M
3300019362|Ga0173479_10741545All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria535Open in IMG/M
3300025885|Ga0207653_10028291All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1803Open in IMG/M
3300025899|Ga0207642_10171091All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1175Open in IMG/M
3300025923|Ga0207681_10383373All Organisms → cellular organisms → Bacteria → Proteobacteria1132Open in IMG/M
3300025923|Ga0207681_10463743All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1032Open in IMG/M
3300025934|Ga0207686_10450023All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium990Open in IMG/M
3300025936|Ga0207670_11901521All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria506Open in IMG/M
3300025942|Ga0207689_11021755All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria697Open in IMG/M
3300025972|Ga0207668_10037887All Organisms → cellular organisms → Bacteria → Proteobacteria3231Open in IMG/M
3300026023|Ga0207677_10497690All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1053Open in IMG/M
3300026075|Ga0207708_10605890All Organisms → cellular organisms → Bacteria → Proteobacteria928Open in IMG/M
3300026075|Ga0207708_10775069All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium824Open in IMG/M
3300026088|Ga0207641_10454522All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1238Open in IMG/M
3300026118|Ga0207675_100717881All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1009Open in IMG/M
3300026118|Ga0207675_101863796All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria620Open in IMG/M
3300026320|Ga0209131_1096286All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1568Open in IMG/M
3300027326|Ga0209731_1060456All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria581Open in IMG/M
3300027637|Ga0209818_1068616All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria890Open in IMG/M
3300027637|Ga0209818_1129675All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria692Open in IMG/M
3300027880|Ga0209481_10395296All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium708Open in IMG/M
3300027880|Ga0209481_10493665All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria632Open in IMG/M
3300027886|Ga0209486_11036247All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria553Open in IMG/M
3300027909|Ga0209382_10615591All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1180Open in IMG/M
3300028381|Ga0268264_12515668All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria520Open in IMG/M
3300028590|Ga0247823_11018174All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria621Open in IMG/M
3300028802|Ga0307503_10547548All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria631Open in IMG/M
3300028809|Ga0247824_10408217All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria786Open in IMG/M
3300028812|Ga0247825_10223710All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1304Open in IMG/M
3300031455|Ga0307505_10668938All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria508Open in IMG/M
3300031548|Ga0307408_100983252All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria777Open in IMG/M
3300031548|Ga0307408_101700999All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria601Open in IMG/M
3300031820|Ga0307473_10425687All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria877Open in IMG/M
3300031854|Ga0310904_10190583All Organisms → cellular organisms → Bacteria → Proteobacteria1227Open in IMG/M
3300031854|Ga0310904_10593487All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria755Open in IMG/M
3300031858|Ga0310892_10004485All Organisms → cellular organisms → Bacteria → Proteobacteria5171Open in IMG/M
3300031913|Ga0310891_10253147All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria609Open in IMG/M
3300032002|Ga0307416_103077246All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria558Open in IMG/M
3300032002|Ga0307416_103517356All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria524Open in IMG/M
3300032003|Ga0310897_10211765All Organisms → cellular organisms → Bacteria → Proteobacteria850Open in IMG/M
3300032144|Ga0315910_11376208All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria551Open in IMG/M
3300032180|Ga0307471_100510013All Organisms → cellular organisms → Bacteria1352Open in IMG/M
3300032205|Ga0307472_102562365All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria519Open in IMG/M
3300032211|Ga0310896_10381130All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria749Open in IMG/M
3300032421|Ga0310812_10330641All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria680Open in IMG/M
3300033551|Ga0247830_10438194All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1021Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere13.21%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil10.38%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere10.38%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil9.43%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil6.60%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil6.60%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil4.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.72%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.77%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.77%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere3.77%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil2.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.83%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.89%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.89%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.94%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.94%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.94%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.94%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.94%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.94%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.94%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.94%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002075Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4Host-AssociatedOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300004643Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005364Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaGHost-AssociatedOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005438Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006880Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007004Agricultural soil microbial communities from Utah to study Nitrogen management - NC CompostEnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009078Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300010159Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3EnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012232Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT100_2EnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012960Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025936Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025942Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026088Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300027326Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027637Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027886Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028590Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30EnvironmentalOpen in IMG/M
3300028802Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_SEnvironmentalOpen in IMG/M
3300028809Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300031455Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 23_SEnvironmentalOpen in IMG/M
3300031548Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3Host-AssociatedOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031913Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4EnvironmentalOpen in IMG/M
3300032002Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3Host-AssociatedOpen in IMG/M
3300032003Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032211Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D1EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033551Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI24738J21930_1016212613300002075Corn RhizosphereTCDDARSLLQAERFGMVIVGVHFDESQMFTLLADIRAHAKYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARATGEPVPLHKERRKASE*
Ga0062593_10075671913300004114SoilRKIPVLCVLGTHRVLTDIAIEGLDHAVKAMRANGFLDLHHFDDDEAGNSRIGRIVDYLILIDGDLQHIARTTGEPVLGDRRRAG*
Ga0062589_10034532633300004156SoilSQMFTLLGDIRSHAKYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALRANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVDPPAKERRHASQGR*
Ga0062590_10031429423300004157SoilMVIVGVHFDESQMFTLLADIRAHAKYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARATGEPVPLHKERRKASE*
Ga0063356_10357061223300004463Arabidopsis Thaliana RhizosphereVILGVHFDDSRMFSLLGDIRAHSGYRKVPILCVLGSRGRAITEIAVEGLDHAVKAMRANGFLDLEHFSDDDEGNGRICRIVDYLILIDGDLQHIARTTGETLVPADRRRAH*
Ga0062591_10081105933300004643SoilLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEQGNARIRRIADYLILIDGDLQHIARQSDEPAAAPAEERRRHASHTS*
Ga0062594_10119220823300005093SoilGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLAHFPDDEESNARICRIVDYLILIDGDLQHIARATGEDLGPLDRRRASGVSR*
Ga0065705_1038107733300005294Switchgrass RhizosphereDIRSRARYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRIADYLILIDGDLQHIARQTGEPVAEERRRVSQA*
Ga0070676_1044929533300005328Miscanthus RhizosphereSRAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDHEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ*
Ga0068868_10174052113300005338Miscanthus RhizosphereKYRKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEPGNARIRRIADYLILIDGDLQHIARQTDEPAAAPAEERRRPAAAMLKS*
Ga0070669_10127871023300005353Switchgrass RhizosphereIRSHAKYRKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEPGNARIRRIADYLILIDGDLQHIARQTDEPAAAPAEERRRPAAAMLKS*
Ga0070673_10128658323300005364Switchgrass RhizosphereMLALEARHGMVILGVHFDDSQMFSLLGDIRSHSAYRKVPVLCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLTHFPDDDEGNQRICRIIDYLILIDGDLQHIARTTGESLGLADRRRMAS*
Ga0070703_1055444613300005406Corn, Switchgrass And Miscanthus RhizosphereDARELLEREVFGLVMLGVHFDESQMFSLLGDIRSRAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDHEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ*
Ga0070701_1079225513300005438Corn, Switchgrass And Miscanthus RhizosphereYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLAHFPDDEESNARICRIVDYLILIDGDLQHIARTTGETLIPADRRRSAN*
Ga0070705_10077624813300005440Corn, Switchgrass And Miscanthus RhizosphereVMVGVHFDESQMFTLLGDIRSHAKYRKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVDPPAKERRHASQGR*
Ga0070694_10113986013300005444Corn, Switchgrass And Miscanthus RhizosphereLLGDIRAHSGYRKVPILCVLGTRGRAITDIAVEGLDHAVKAMRANGFLDLQHFADDDEGNARIRRIVDYLILIDGDLQHIARTTGEQLGLADRRRAGG*
Ga0070698_10046015413300005471Corn, Switchgrass And Miscanthus RhizosphereMRELDPDYRMVVLGVHFDESQMFSLLGDIRTHSKYRKIPVLCVLGSRGRAITDVAVEGLDHAVKALRANGFLDLQHFPDDDEGNSRIARIVDYLILIDGDLQHIARSLDDSVPQVERRRAEAH*
Ga0070697_10015195513300005536Corn, Switchgrass And Miscanthus RhizosphereEDKHGIVILGVHFDDSQMFSLLGDIRAHSGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLAHFPDDEEGNARIGRIVDYLILIDGDLQHIARTTGETLIPADRRRSAN*
Ga0070697_10086548513300005536Corn, Switchgrass And Miscanthus RhizosphereYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARATGEPVPLHKERRKASE*
Ga0068853_10183155513300005539Corn RhizosphereSQMFSLLGDIRSRAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDDEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ*
Ga0070686_10102980513300005544Switchgrass RhizosphereHSGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLSHFPDDEEGNSRICRIVDYLILIDGDLQHIARTTGETLLPADRRKTAH*
Ga0070693_10124949623300005547Corn, Switchgrass And Miscanthus RhizosphereKVPILCVLGERGRALSPIAVEGLDHAVKAMTANGFLDLLRFPDDEKGNGRVRRIVDYLILIDGDLHNPADKTGEEIPVIDLIDRRRATTT*
Ga0070704_10049620713300005549Corn, Switchgrass And Miscanthus RhizosphereLLGDIRAHSGYRKVPILCVLGSRGRAITEIAVEGLDHAVKAMRANGFLDLAHFPDDEEGNARIGRIVDYLILIDGDLQHIARTTGETLIPADRRRSAN*
Ga0070702_10048176913300005615Corn, Switchgrass And Miscanthus RhizosphereVLCVLGSWGRMLSEVAVEGLDHAVKALRANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVDPPAKERRHASQGR*
Ga0070702_10183872723300005615Corn, Switchgrass And Miscanthus RhizosphereSAYRKVPVLCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLTHFPDDDEGNQRICRIIDYLILIDGDLQHIARTTGESLGLADRRRMAS*
Ga0066665_1081952013300006796SoilRMVILSVHFDESQMFSLLGDVRAHSNYRKIPILCVLGARGPAISEVAIEGLDHAVKAMRANGFLDLHHFADDDEGNARISRIVDYLILIDGDLQHIARALDDSVVQIERRRAKTPAG*
Ga0075421_10104690733300006845Populus RhizosphereARELLDREVFGLVMLGVHFDESQMFSLLGDIRSHARYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFADDDEGNARIRRITDYLILIDGDLQHIARQTGEPVDPGEERRRQPSHAG*
Ga0075421_10115069813300006845Populus RhizosphereCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRITDYLILIDGDLQHIARQTGEPVEPGQERRRQPSHAG*
Ga0075420_10039801023300006853Populus RhizosphereVPILRVLGWQATNLSEAAIEGLDHAVKALTANGFLNLMHFPDEEEDNARIRRIVDHMILINGDLQHIARSTGESVIPLQKERPRSGMQ*
Ga0079217_1100712323300006876Agricultural SoilLGVHFDESQMFSLLGDIRAHAKYRKVPVLCVLGSWGRVLSEVAVEGLDHAVKALMANGFLNLLHFNDDEPGNARVRRIVDYLILIDGDLQHIARTTGERLDPRAEERRAVRPQV*
Ga0075429_10034897413300006880Populus RhizosphereVLCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFADDDEGNARIRRITDYLILIDGDLQHIARQTGEPVDPGEERRRQPSHAG*
Ga0079215_1143272113300006894Agricultural SoilLLGVHFDESQMFSLLGDIRAHAMYRKVPILCVLGTWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEEGNGRIRRIADYLILIDGDLQHIARAAGEPGRPLHLERRAAVKAG*
Ga0075419_1004909473300006969Populus RhizosphereLGDIRSHARYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRITDYLILIDGDLQHIARQTGEPVEPGQERRRQPSHAG*
Ga0079218_1358505113300007004Agricultural SoilLGVHFDESQMFALLGDIRSHARYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALMANGFLNLLHFADDAEGNARIRRIVDYLILIDGDLQHIARTTGERLAPGMEERRAVRQRA*
Ga0079218_1359571823300007004Agricultural SoilGVHFDESQMFSLLGDIRAHAKYRKVPVLCVLGSWGRLLSEVAVEGLDHAVKALMANGFLNLLHFNDDEAGNSRVRRIVDYLILIDGDLQHIARATGERLDSRAEERRAVRPQV*
Ga0066710_10109652223300009012Grasslands SoilFRLVVLSVHFDESQMFSLLGDIRSHSGYRKIPVLCVLGARGRAITEVAVEGLDHAVKAMRANGFLDLQHFADDDEGNLRIARIIDFLILIDGDLQHIARAMDESVPNIERRKTQAL
Ga0105106_1095138513300009078Freshwater SedimentLGDIRAHAKYRKVPILCVLGTWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFADDEDGNTRIRRIVDYLILINGDLQHIARATGERVGPLAEERRAVRQQA*
Ga0066709_10209500923300009137Grasslands SoilDVLRALEDNFRLVVLSVHFDESQMFSLLGDIRSHSGYRKIPVLCVLGARGRAITEVAVEGLDHAVKAMRANGFLDLEHFADDDEGNLRIARIIDFLILIDGDLQHIARAMDESVPNIERRKTQAL*
Ga0111538_1174446423300009156Populus RhizosphereGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDDAGNARVRRIADYLILIDGDLQHIARQTGEPVEPRAEERRVARPEV*
Ga0075423_1281208213300009162Populus RhizosphereSQMFSLLGDIRSHSAYRKVPVLCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLTHFPDDDEGNQRICRIIDYLILIDGDLQHIARTTGESLGLADRRRMAS*
Ga0075423_1296974113300009162Populus RhizosphereIRSHSGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLSHFPDDEEGNSRICRIVDYLILIDGDLQHIARTTGETLLPADRRRAAH*
Ga0099796_1014163313300010159Vadose Zone SoilQFGMVILSVHFDDSQMFSLLGDIRAHSGYRKIPILCVLGNNRGRALTEIAIEGLDHAVKAMRANGFLDLQHFADDDEGNGRVARIVDYLILIDGDLQHIARTTGENLVPADRRRAH*
Ga0134062_1022779523300010337Grasslands SoilALEDRHGMVILSVHFDDSQMFTLLGDIRAHSSYRKVPILCVLGTRGRAITDIAVEGLDHAVKAMRANGFLDLTHFPDDDESNSRICRIVDYLILIDGDLQHIARTTGENLVPVERRRSA*
Ga0134127_1019619853300010399Terrestrial SoilFDESQMFTLLGDIRSHAKYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALRANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVDPPAKERRHASQGR*
Ga0134122_1010088613300010400Terrestrial SoilDSQMFSLLGDIRAHSGYRKVPILCVLGTRGRAITDIAVEGLDHAVKAMRANGFLDLQHFADDDEGNARIRRIVDYLILIDGDLQHIARTTGEQLGLADRRRAGG*
Ga0134122_1024087433300010400Terrestrial SoilDTSEAAMLALEDKHGIVILGVHFDDSQMFLLLGDIRSHSGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLSHFPDDEEGNSRICRIVDYLILIDGDLQHIARTTGETLLPADRRRAAH*
Ga0134122_1050719833300010400Terrestrial SoilFDESQMFTLLGDIRSHAKYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALRANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVEPPAKERRHASQGR*
Ga0134122_1303669623300010400Terrestrial SoilGDIRAPHAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDDESNARIRRIADYLILIDGDLQHIARHTGEPVDEERRRVSQAG*
Ga0134121_1015105333300010401Terrestrial SoilGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLAHFPDDEESNARICRIVDYLILIDGDLQHIARTTGETLLPADRRRSAQ*
Ga0134121_1148631823300010401Terrestrial SoilGVHFDDSQMFSLLSEVRTRAPYRKVPILVVLGERGRALSDVAVEGLDHAVKAMRANGFLDLRHFEDSDEGNARIGRIIDYLILIDGDLQHIARGKGDALVQIDRRRKDGIA*
Ga0137388_1156067413300012189Vadose Zone SoilMVILSVHFDESQMFSLLGDVRAHSNYRKIPILCVLGARGPAISDVAIEGLDHAVKAMRANGFLDLQHFADDDEGNARIARIVDYLILIDGDLQHIARALDDSVVQIERRRGKAER*
Ga0137435_116958923300012232SoilSLLGDIRAHSGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLSHFADDEEGNGRIRRIVDYLILIDGDLQHIARTTGETLIPADRRRSAN*
Ga0137419_1039999213300012925Vadose Zone SoilDESQMFSLLGDIRAHSNYRKIPIVCVLGARGPAISDVAIEGLDHAVKAMRANGFLDLQHFADDDEGNARIARIVDYLILIDGDLQHIARALDDSVVEIERRRTKT*
Ga0164301_1013123333300012960SoilMVIVGVHFDESQMFTLLADIRAHAKYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARA
Ga0157374_1025730713300013296Miscanthus RhizosphereMVIVGVHFDESQMFTLLADIRAHAKYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARATGEP
Ga0157380_1236852723300014326Switchgrass RhizosphereRSHAKYRKVPVLCVLGSWGRMLSEVAVEGPDHAVKALRANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVDPPAKERRHASQGR*
Ga0190265_1162268913300018422SoilAHAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFADDEDGNARIRRIVDYLILINGDLQHIARATGERVGPVTQERRVARHGA
Ga0190272_10009036103300018429SoilVLCVLGSWGRLLSEVAVEGLDHAVKALMANGFLNLLHFDDDESGNARVRRIVDYLILINGDLQHIARTTGERLDPRAEERRAVRLQ
Ga0190272_1171563623300018429SoilVLCVLGSWGRLLSEVAVEGLDHAVKALMANGFLNLLHFDDDHDGDARIRRIVDYLILIDGDLQHIARTTGERVGPVGEERRAVRPDA
Ga0190270_1129011813300018469SoilSQMFSLLSEIRAHAMYRKVPILCVLGSWGRLLSEVAVEGLDHAVKAMMANGFLNLMHFPDNAEGNARIRRIADYLILIDGDLQHIARATGERLEPPLIERRAVS
Ga0173482_1033587113300019361SoilMVIVGVHFDESQMFTLLADIRAHAKYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARATGEPVPLHKERRKASE
Ga0173479_1074154513300019362SoilTLLGDIRSHAKYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALRANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEHVDPPAKERRHASPGR
Ga0207653_1002829123300025885Corn, Switchgrass And Miscanthus RhizosphereSDDARELLEREVFGLVMLGVHFDESQMFSLLGDIRSRAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDHEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ
Ga0207642_1017109133300025899Miscanthus RhizosphereKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDDEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ
Ga0207681_1038337333300025923Switchgrass RhizosphereDIRSHAKYRKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEPGNARIRRIADYLILIDGDLQHIARQTDEPAAAPAEERRRPAAAMLKS
Ga0207681_1046374313300025923Switchgrass RhizosphereQMFTLLADIRAHAKYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARATGEPVPLHKERRKASE
Ga0207686_1045002323300025934Miscanthus RhizosphereTVGTSDEAMQALEDKHGIVILGVHFDDSQMFSLLGDIRAHSGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLAHFPDDEESNARICRIVDYLILIDGDLQHIARTTGETLLPADRRRSAQ
Ga0207670_1190152113300025936Switchgrass RhizosphereRELLDRDVFGLVMVGVHFDESQMFTLLGDIRSHAKYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALRANGFLNLLHFPDDEEGNARVRRIADYLILIDGDLQHIARQTGEPVDPPAKERRHASQGR
Ga0207689_1102175513300025942Miscanthus RhizosphereDDSQMFLLLGDIRSHSGYRKVPILCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLSHFPDDEEGNSRICRIVDYLILIDGDLQHIARTTGETLLPADRRRAAH
Ga0207668_1003788753300025972Switchgrass RhizosphereFSLLGDIRSRAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVNAMMANGFLNLLHFPDDHEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ
Ga0207677_1049769033300026023Miscanthus RhizosphereYRKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVEPPAVERRHASHSS
Ga0207708_1060589013300026075Corn, Switchgrass And Miscanthus RhizosphereLLDRDVFGLVMVGVHFDESQMFTLLGDIRSHAKYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALRANGFLNLLHFPDDEEGNARIRRIADYLILIDGDLQHIARQTGEPVEPPAVERRHASHSS
Ga0207708_1077506913300026075Corn, Switchgrass And Miscanthus RhizosphereMATASEALRALEDKFKLVVLSVHFDESQMFSLLGDIRSHSAYRKIPILCVLGVQRGKAITDVAVEGLDHAVKALRANGFLDLAHFPDDEESNARICRIVDYLILIDGDLQHIARTTGETLLPADRRRSAQ
Ga0207641_1045452213300026088Switchgrass RhizosphereMVIVGVHFEESQMFTLLADIRAHAKYRKVPILCVLGNRGRVLNEVAIEGLDHAVKAMMANGFLNLLHFGDDEEGNARIRRIVDHMILIDGDLQYIARATGEPVPLHKERRKASE
Ga0207675_10071788113300026118Switchgrass RhizosphereLLGDIRSHSAYRKVPVLCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLTHFPDDDEGNQRICRIIDYLILIDGDLQHIARTTGESLGLADRRRMAS
Ga0207675_10186379613300026118Switchgrass RhizosphereHAKYRKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEPGNARIRRIADYLILIDGDLQHIARQTDEPAAAPAEERRRPAAAMLKS
Ga0209131_109628613300026320Grasslands SoilDEEGFRMAIIAVHFDESQMFALLGDIRLHSGYRKIPVVILLGPGRYALSDVAVEAIDHAVKAMGANGLLDMEHFPDTEEGNARICRIVDYLILIDGDLQHIARETGDPVVASVAERRRSRAG
Ga0209731_106045623300027326Forest SoilLESERFGLVFLGVHFDESQMFSLLGEIRAHAQYRKVPILCVLGSWGRLLSEVAVEGLDHAVKAMMANGFLNLMHFPDNTEGNARIRRIADYLILIDGDLQHIARATGERLEPPLIERRAA
Ga0209818_106861623300027637Agricultural SoilSLLGDIRAHAKYRKVPVLCVLGSWGRVLSEVAVEGLDHAVKALMANGFLNLLHFNDDEPGNARVRRIVDYLILIDGDLQHIARTTGERLDPRAEERRAVRPQV
Ga0209818_112967523300027637Agricultural SoilRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALMANGFLNLLHFADDAEGNARIRRIVDYLILIDGDLQHIARTTGERLAPGMEERRAVRQRA
Ga0209481_1039529613300027880Populus RhizosphereVILGVHFDDSQMFSLLGDIRSHSAYRKVPVLCVLGSRGRAITDIAVEGLDHAVKAMRANGFLDLTHFPDDDEGNQRICRIIDYLILIDGDLQHIARTTGESLGLADRRRMAS
Ga0209481_1049366523300027880Populus RhizosphereRKVPVLCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRITDYLILIDGDLQHIARQTGEPVEPGQERRRQPSHAG
Ga0209486_1103624723300027886Agricultural SoilVLCVLGSWGRLLSEVAVEGLDHAVKALMANGFLNLLHFNDDEPGNARVRRIVDYLILIDGDLQHIARATGERLDPRAEERRAVRPHA
Ga0209382_1061559113300027909Populus RhizosphereVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRITDYLILIDGDLQHIARQTGEPVEPGQERRRQPSHAG
Ga0268264_1251566813300028381Switchgrass RhizosphereIRSHAKYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKALRTNNFLNLLHFPDDEKDNARIRRIADYLILIDGDLQHIARQTGEPVEPPAVERRHASHSS
Ga0247823_1101817413300028590SoilHFDESQMFSLLGDIRSHARYRKVPVLCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRITDYLILIDGDLQHIARQTGEPVEPGQERRRQPSHAG
Ga0307503_1054754823300028802SoilSLLGDIRAHSAYRKIPVLCVLGSRGWALSDVAVEGLDHAVKAMRANGFLDLQHFDDDEEGNGRIERIVDYLLLIDGDLQHIARSTGEPVGHVERRRVR
Ga0247824_1040821723300028809SoilEARLQLERERFGLVCLGVHFDESQMFSLLGDIRAHAKYRKAPVLCVLGSWGRLLSEVAVEGLDHAVKALMANGFLNLLHFNDDEPGNARVRRIVDYLILIDGDLQHIARATGERLDPRAEERRAVRPQV
Ga0247825_1022371013300028812SoilLGVHFDESQMFSLLADIRSHARYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFADDDEGNARIRRITDYLILIDGDLQHIARQTGEPVDPGQERRRQPSHAA
Ga0307505_1066893813300031455SoilRERLENERFGLVVLGVHFDESQMFALLADIRAHARYRKVPILCVLGTWGRMLSDIAVEGLDHAVKAMMANGFLNLLHFTDDAGGTAGVRRIVDYLILIDGDLQHIARATNQGAREMPAIERRAAS
Ga0307408_10098325213300031548RhizosphereVHLVSTRAAAWSLLEKDRFAMVILGVHFDESQMFALLADIRAHAMYRKVPVLCVLAAPSEHLSDIAIEGLDHAVKAMMANGFLNMANIADDDEGNARIRRIVDYLILIDGDLQHIARATGDSATPPAVERRAVND
Ga0307408_10170099923300031548RhizosphereGDIRAHAKYRKVPVLCVLGSWGRLLSEVAVEGLDHAVKALMANGFLNLLHFRDDAEGNARVRRIVDYLILIDGDLQHIARATGERLDPHAEERRAPRPHV
Ga0307473_1042568713300031820Hardwood Forest SoilQMFSLLGDIRAHSGYRKVPVLCVLGSRGRAITEIAVEGLDHAVKAMRANGFLDLHHFGDDDEGNGRIRRIVDYLILIDGDLQHIARTTGEVLLGDRRRTAS
Ga0310904_1019058343300031854SoilLVLLGVHFDESQMFSVLGDIRSRARYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRIADYLILIDGDLQHIARQTGEPVAEERRRVSQA
Ga0310904_1059348713300031854SoilAKYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDDEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ
Ga0310892_10004485103300031858SoilGDDARELLERDVYGLVLLGVHFDESQMFSVLGDIRSRARYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRIADYLILIDGDLQHIARQTGEPVAEERRRVSQA
Ga0310891_1025314713300031913SoilLEEQYGMVILSIDFDDSQMFSLLGDIRTHSGYRKVPILCVLGSWGRMLSEVAVQGLDHAVKALMANGFLNLLHFPDDEPGNARIRRIADYLILIDGDLQHIARQTDEPAAAPAEERRRPAAAMLKS
Ga0307416_10307724613300032002RhizosphereGHYGMVIIGVHFDESQMFSLLGDVRAHSGYRKVPVLCVLGNRGRALTDVAIEGLDHAVKAMRANGYLDLQHVDDDDKGNSRIRRIVDNLIMIDGDLQHIARATGDDSIVPIERRRSKA
Ga0307416_10351735613300032002RhizosphereMGELDAGYKIVVLGVHFDESQMFSLLGDIRTHSKYRKIPVLCVLGSRGRAITDVAVEGLDHAVKAMRANGFLDLLHFPDDDEGNARIARIVDYLILIDGDLQHIARRLDDSVPQIERRRAEVH
Ga0310897_1021176513300032003SoilYGLVLLGVHFDESQMFSVLGDIRSRARYRKVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDEQGNARIRRIADYLILIDGDLQHIARQTGEPVAEERRRVSQA
Ga0315910_1137620823300032144SoilKVPVLCVLGSWGRMLSEVAVEGLDHAVKALMANGFLNLLHFADDEEGNARIRRIVDYLILIDGDLQHIARTTGERLAPGMEERRATRL
Ga0307471_10051001333300032180Hardwood Forest SoilVIVSVHFDDSQMFSLLGDIRAHSGYRKVPVLCVLGSRGRAITEIAVEGLDHAVKAMRANGFLDLHHFGDDDEGNGRIRRIVDYLILIDGDLQHIARTTGEVLLGDRRRTAS
Ga0307472_10256236513300032205Hardwood Forest SoilSQMFSLLGDIRAHSGYRKVPILCVLGSRGRAITEIAVEGLDHAVKAMRANGFLDLSHFPDDEEGNSRIRRIVDYLILIDGDLQHIARTTGETLLPADRRRSAH
Ga0310896_1038113013300032211SoilVPILCVLGSWGRMLSEVAVEGLDHAVKAMMANGFLNLLHFPDDDEGNARIRRIADYLILIDGDLQHIARQTGESVDPPREERRRVAAQ
Ga0310812_1033064113300032421SoilKHGIVILGVHFDDSQMFSLLGDIRAHSGYRKVPILCVLGSRGRAITEIAVEGLDHAVKAMRANGFLDLAHFPDDEEGNARIGRIVDYLILIDGDLQHIARTTGETLIPADRRRSAN
Ga0247830_1043819413300033551SoilCVLGSWGRVLSEVAVEGLDHAVKALMANGFLNLLHFNDDEPGNARVRRIVDYLILIDGDLQHIARATGERLDPRAEERRAVRPQV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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