NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F093097

Metagenome / Metatranscriptome Family F093097

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F093097
Family Type Metagenome / Metatranscriptome
Number of Sequences 106
Average Sequence Length 51 residues
Representative Sequence LVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRIEELERRVKTLERRT
Number of Associated Samples 66
Number of Associated Scaffolds 106

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 62.50 %
% of genes near scaffold ends (potentially truncated) 24.53 %
% of genes from short scaffolds (< 2000 bps) 70.75 %
Associated GOLD sequencing projects 64
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (56.604 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland
(39.623 % of family members)
Environment Ontology (ENVO) Unclassified
(65.094 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(50.000 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 61.04%    β-sheet: 0.00%    Coil/Unstructured: 38.96%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 106 Family Scaffolds
PF07690MFS_1 11.32
PF00248Aldo_ket_red 5.66
PF00291PALP 4.72
PF00903Glyoxalase 2.83
PF00293NUDIX 1.89
PF00708Acylphosphatase 1.89
PF01435Peptidase_M48 1.89
PF14242DUF4342 1.89
PF01694Rhomboid 1.89
PF12727PBP_like 1.89
PF02776TPP_enzyme_N 1.89
PF01944SpoIIM 1.89
PF04014MazE_antitoxin 1.89
PF01557FAA_hydrolase 0.94
PF01979Amidohydro_1 0.94
PF12802MarR_2 0.94
PF13412HTH_24 0.94
PF01546Peptidase_M20 0.94
PF07681DoxX 0.94
PF01738DLH 0.94
PF01040UbiA 0.94
PF02900LigB 0.94
PF01980TrmO 0.94
PF028262-Hacid_dh_C 0.94
PF10923BrxC_BrxD 0.94
PF03992ABM 0.94
PF02673BacA 0.94
PF00005ABC_tran 0.94
PF01619Pro_dh 0.94
PF01408GFO_IDH_MocA 0.94
PF07969Amidohydro_3 0.94
PF05534HicB 0.94
PF01862PvlArgDC 0.94
PF02738MoCoBD_1 0.94
PF08241Methyltransf_11 0.94
PF01025GrpE 0.94
PF00202Aminotran_3 0.94
PF08734GYD 0.94
PF04402SIMPL 0.94
PF01814Hemerythrin 0.94

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 106 Family Scaffolds
COG0705Membrane-associated serine protease, rhomboid familyPosttranslational modification, protein turnover, chaperones [O] 1.89
COG1300Stage II sporulation protein SpoIIM, component of the engulfment complexCell cycle control, cell division, chromosome partitioning [D] 1.89
COG0506Proline dehydrogenaseAmino acid transport and metabolism [E] 0.94
COG0576Molecular chaperone GrpE (heat shock protein HSP-70)Posttranslational modification, protein turnover, chaperones [O] 0.94
COG1598Antitoxin component HicB of the HicAB toxin-antitoxin systemDefense mechanisms [V] 0.94
COG1720tRNA (Thr-GGU) A37 N6-methylaseTranslation, ribosomal structure and biogenesis [J] 0.94
COG1945Pyruvoyl-dependent arginine decarboxylaseAmino acid transport and metabolism [E] 0.94
COG1968Undecaprenyl pyrophosphate phosphataseLipid transport and metabolism [I] 0.94
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.94
COG2859Outer membrane channel-forming protein BP26/OMP28, SIMPL familyCell wall/membrane/envelope biogenesis [M] 0.94
COG2968Uncharacterized conserved protein YggE, contains kinase-interacting SIMPL domainFunction unknown [S] 0.94
COG3471Predicted secreted (periplasmic) proteinFunction unknown [S] 0.94
COG4226Predicted nuclease of the RNAse H fold, HicB familyGeneral function prediction only [R] 0.94
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.94
COG4274Uncharacterized conserved protein, contains GYD domainFunction unknown [S] 0.94


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A56.60 %
All OrganismsrootAll Organisms43.40 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002485|C687J35088_10069564All Organisms → cellular organisms → Bacteria1078Open in IMG/M
3300003852|Ga0031655_10160076Not Available871Open in IMG/M
3300003892|Ga0063012_10003880All Organisms → cellular organisms → Archaea45552Open in IMG/M
3300003892|Ga0063012_10063447Not Available8904Open in IMG/M
3300004152|Ga0062386_101049298Not Available676Open in IMG/M
3300009547|Ga0116136_1176407Not Available537Open in IMG/M
3300009548|Ga0116107_1175682All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon575Open in IMG/M
3300009549|Ga0116137_1035634Not Available1709Open in IMG/M
3300009617|Ga0116123_1037473Not Available1433Open in IMG/M
3300009631|Ga0116115_1002718All Organisms → cellular organisms → Bacteria6731Open in IMG/M
3300009631|Ga0116115_1147828Not Available597Open in IMG/M
3300010324|Ga0129297_10000248Not Available25898Open in IMG/M
3300010324|Ga0129297_10170197All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon1008Open in IMG/M
3300010339|Ga0074046_10063417Not Available2427Open in IMG/M
3300010339|Ga0074046_10511206Not Available716Open in IMG/M
3300010343|Ga0074044_10276546All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon RBG_13_38_91106Open in IMG/M
3300010343|Ga0074044_10877269Not Available586Open in IMG/M
3300010379|Ga0136449_100556896Not Available1969Open in IMG/M
3300010938|Ga0137716_10007576All Organisms → cellular organisms → Archaea22385Open in IMG/M
3300012931|Ga0153915_10487953All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon1407Open in IMG/M
3300012964|Ga0153916_10306585All Organisms → cellular organisms → Archaea1625Open in IMG/M
3300012964|Ga0153916_12098426All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota634Open in IMG/M
3300017929|Ga0187849_1020704All Organisms → cellular organisms → Archaea3702Open in IMG/M
3300017931|Ga0187877_1000803Not Available36773Open in IMG/M
3300017939|Ga0187775_10157908Not Available813Open in IMG/M
3300017939|Ga0187775_10276018All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon654Open in IMG/M
3300017940|Ga0187853_10236655Not Available842Open in IMG/M
3300017941|Ga0187850_10004241All Organisms → cellular organisms → Archaea11478Open in IMG/M
3300017959|Ga0187779_10009986All Organisms → cellular organisms → Bacteria5453Open in IMG/M
3300017959|Ga0187779_10036004Not Available2861Open in IMG/M
3300017959|Ga0187779_10039358All Organisms → cellular organisms → Bacteria2741Open in IMG/M
3300017959|Ga0187779_10098984Not Available1755Open in IMG/M
3300017959|Ga0187779_10919619Not Available603Open in IMG/M
3300017961|Ga0187778_10583086All Organisms → cellular organisms → Archaea748Open in IMG/M
3300017966|Ga0187776_10389145Not Available930Open in IMG/M
3300017966|Ga0187776_10755909Not Available693Open in IMG/M
3300017966|Ga0187776_10757009Not Available693Open in IMG/M
3300017966|Ga0187776_11331592Not Available544Open in IMG/M
3300017972|Ga0187781_10187113Not Available1459Open in IMG/M
3300017973|Ga0187780_10089569All Organisms → cellular organisms → Archaea2118Open in IMG/M
3300017973|Ga0187780_10100395All Organisms → cellular organisms → Archaea1993Open in IMG/M
3300017973|Ga0187780_10900992Not Available642Open in IMG/M
3300017974|Ga0187777_10351231All Organisms → cellular organisms → Archaea1014Open in IMG/M
3300017975|Ga0187782_10785132Not Available736Open in IMG/M
3300018001|Ga0187815_10538374Not Available502Open in IMG/M
3300018002|Ga0187868_1186140Not Available730Open in IMG/M
3300018005|Ga0187878_1090114All Organisms → cellular organisms → Bacteria1273Open in IMG/M
3300018015|Ga0187866_1327867Not Available532Open in IMG/M
3300018018|Ga0187886_1010314All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota5786Open in IMG/M
3300018020|Ga0187861_10493968Not Available503Open in IMG/M
3300018021|Ga0187882_1017781All Organisms → cellular organisms → Archaea4139Open in IMG/M
3300018023|Ga0187889_10406292Not Available589Open in IMG/M
3300018029|Ga0187787_10299167Not Available604Open in IMG/M
3300018058|Ga0187766_10327817Not Available997Open in IMG/M
3300018058|Ga0187766_10910659Not Available621Open in IMG/M
3300018062|Ga0187784_10165937All Organisms → cellular organisms → Archaea1803Open in IMG/M
3300018062|Ga0187784_10279438Not Available1357Open in IMG/M
3300018062|Ga0187784_10563383All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20916Open in IMG/M
3300018062|Ga0187784_11155146Not Available614Open in IMG/M
3300018064|Ga0187773_10647930All Organisms → cellular organisms → Bacteria652Open in IMG/M
3300018064|Ga0187773_10740993Not Available618Open in IMG/M
3300018086|Ga0187769_10055444All Organisms → cellular organisms → Archaea2763Open in IMG/M
3300018086|Ga0187769_10238562Not Available1351Open in IMG/M
3300018086|Ga0187769_10415732Not Available1012Open in IMG/M
3300018086|Ga0187769_11471311Not Available515Open in IMG/M
3300018088|Ga0187771_10048381All Organisms → cellular organisms → Archaea3305Open in IMG/M
3300018088|Ga0187771_10703449Not Available857Open in IMG/M
3300018088|Ga0187771_10731394Not Available839Open in IMG/M
3300018088|Ga0187771_10738303Not Available835Open in IMG/M
3300018088|Ga0187771_11789553Not Available522Open in IMG/M
3300018088|Ga0187771_11803619All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_20519Open in IMG/M
3300018089|Ga0187774_10028574All Organisms → cellular organisms → Archaea2288Open in IMG/M
3300018089|Ga0187774_10103655All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon RBG_16_50_201407Open in IMG/M
3300018089|Ga0187774_10283300All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → unclassified Nitrososphaeria → Nitrososphaeria archaeon956Open in IMG/M
3300018090|Ga0187770_10372048All Organisms → cellular organisms → Archaea1120Open in IMG/M
3300018090|Ga0187770_10426733All Organisms → cellular organisms → Archaea1043Open in IMG/M
3300019264|Ga0187796_1377295Not Available1134Open in IMG/M
3300019273|Ga0187794_1556160Not Available576Open in IMG/M
3300019273|Ga0187794_1565885Not Available545Open in IMG/M
3300022551|Ga0212089_10000124Not Available49973Open in IMG/M
3300022551|Ga0212089_10103374All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1521Open in IMG/M
3300025119|Ga0209126_1001036All Organisms → cellular organisms → Archaea9569Open in IMG/M
3300025144|Ga0209725_1072342All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1168Open in IMG/M
3300025319|Ga0209520_10078686Not Available2102Open in IMG/M
3300027698|Ga0209446_1186462Not Available534Open in IMG/M
3300027825|Ga0209039_10185201Not Available853Open in IMG/M
(restricted) 3300031593|Ga0315307_1171467Not Available734Open in IMG/M
(restricted) 3300031806|Ga0315306_10359329Not Available514Open in IMG/M
3300031862|Ga0315280_10003738All Organisms → cellular organisms → Archaea23078Open in IMG/M
3300031862|Ga0315280_10022196All Organisms → cellular organisms → Bacteria6710Open in IMG/M
3300032046|Ga0315289_10460674Not Available1238Open in IMG/M
3300032069|Ga0315282_10000088All Organisms → cellular organisms → Archaea180891Open in IMG/M
3300032069|Ga0315282_10027172All Organisms → cellular organisms → Archaea7500Open in IMG/M
3300032069|Ga0315282_10078022All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon3173Open in IMG/M
3300032069|Ga0315282_10231468All Organisms → cellular organisms → Archaea1294Open in IMG/M
3300032163|Ga0315281_10695797Not Available1059Open in IMG/M
3300032829|Ga0335070_10393136All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota1327Open in IMG/M
3300033402|Ga0326728_10673032Not Available785Open in IMG/M
3300033405|Ga0326727_10281578Not Available1666Open in IMG/M
3300033405|Ga0326727_11045073All Organisms → cellular organisms → Bacteria589Open in IMG/M
3300033808|Ga0314867_009714Not Available2257Open in IMG/M
3300033977|Ga0314861_0051659All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Aenigmarchaeota → unclassified Aenigmarchaeota → Candidatus Aenigmarchaeota archaeon2279Open in IMG/M
3300033977|Ga0314861_0069224All Organisms → cellular organisms → Archaea1884Open in IMG/M
3300034091|Ga0326724_0008596Not Available11310Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland39.62%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland10.38%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment9.43%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland5.66%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland5.66%
Lake SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Lake Sediment4.72%
Bog Forest SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil3.77%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil3.77%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.83%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands2.83%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil2.83%
Hot Spring SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Sediment1.89%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil1.89%
Freshwater Lake SedimentEnvironmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment0.94%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment0.94%
Hot Spring Fe-Si SedimentEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Neutral → Hot Spring Fe-Si Sediment0.94%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.94%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.94%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002485Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_1EnvironmentalOpen in IMG/M
3300003852Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HBEnvironmentalOpen in IMG/M
3300003892Hot spring sediment microbial communities from Chocolate Pots, Yellowstone National Park, Wyoming that are Fe(III) reducing - CP Core 2, 1cmEnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300009547Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40EnvironmentalOpen in IMG/M
3300009548Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_100EnvironmentalOpen in IMG/M
3300009549Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_100EnvironmentalOpen in IMG/M
3300009617Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_100EnvironmentalOpen in IMG/M
3300009631Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100EnvironmentalOpen in IMG/M
3300010324Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaGEnvironmentalOpen in IMG/M
3300010339Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3EnvironmentalOpen in IMG/M
3300010343Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300010938Sediment microbial community from Chocolate Pots hot springs, Yellowstone National Park, Wyoming, USA. Combined Assembly of Gp0156111, Gp0156114, Gp0156117EnvironmentalOpen in IMG/M
3300012931Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 3 metaGEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300017929Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100EnvironmentalOpen in IMG/M
3300017931Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300017940Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100EnvironmentalOpen in IMG/M
3300017941Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_150EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017961Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MGEnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018001Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5EnvironmentalOpen in IMG/M
3300018002Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_40EnvironmentalOpen in IMG/M
3300018005Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_150EnvironmentalOpen in IMG/M
3300018015Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_150EnvironmentalOpen in IMG/M
3300018018Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_150EnvironmentalOpen in IMG/M
3300018020Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_100EnvironmentalOpen in IMG/M
3300018021Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150EnvironmentalOpen in IMG/M
3300018023Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_100EnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018058Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018062Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018086Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MGEnvironmentalOpen in IMG/M
3300018088Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MGEnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018090Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300019264Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019273Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300022551Boni_combined assemblyEnvironmentalOpen in IMG/M
3300025119Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 19_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025144Lake sediment bacterial and archeal communities from Gulf of Boni, Indonesia to study Microbial Dark Matter (Phase II) - ?I18A1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025319Soil microbial communities from Rifle, Colorado, USA - sediment 16ft 1EnvironmentalOpen in IMG/M
3300027698Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027825Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300031593 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP2EnvironmentalOpen in IMG/M
3300031806 (restricted)Freshwater sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - TDP1EnvironmentalOpen in IMG/M
3300031862Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G06_40EnvironmentalOpen in IMG/M
3300032046Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_40EnvironmentalOpen in IMG/M
3300032069Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_20EnvironmentalOpen in IMG/M
3300032163Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G07_0EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033402Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MNEnvironmentalOpen in IMG/M
3300033405Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MYEnvironmentalOpen in IMG/M
3300033808Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20EnvironmentalOpen in IMG/M
3300033977Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75EnvironmentalOpen in IMG/M
3300034091Peat soil microbial communities from McLean, Ithaca, NY, United States - MB00NEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
C687J35088_1006956433300002485SoilLVEEKTARELKKLFAELVDHSHGHHKAIHGLSKRVKELEQRVRTLERRTGSS*
Ga0031655_1016007623300003852Freshwater Lake SedimentLVEEKTARELKKLLNELVDXSYGHHKAIHGIMKRVEELERRVKTLERRK*
Ga0063012_1000388033300003892Hot Spring SedimentVVEEKTARELKKLLTELVDHSYGHHKAIHGLAKRIANLERRVRALERKGS*
Ga0063012_1006344773300003892Hot Spring SedimentLVEEKTAKELKKLFGKLIDHSYGHHSAILGLLKRITELERRIRVLERKARK*
Ga0062386_10104929823300004152Bog Forest SoilKTARELKKLLNDLVDHSYGHHKAIHGLTNRIEELERRIKALEQKR*
Ga0116136_117640723300009547PeatlandVEEKTARELKKLLNDLVDHSYGHHKAIHGLTRRIEELERRIKTLEHK
Ga0116107_117568213300009548PeatlandLDLVEEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKAL
Ga0116137_103563423300009549PeatlandMRGSDFLVEEKTARELKKLLNELVNHSYGHHKAIHGLSKRIEELERRVKTLERRT*
Ga0116123_103747323300009617PeatlandLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRIEELERRVKTLERRT*
Ga0116115_100271873300009631PeatlandLVEAKTAKELKRLLGELVDHSYGHHRAIDGLSKRVKELDARVRTLERKAGH*
Ga0116115_114782823300009631PeatlandMRGSDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRIEELARRVKTLERRT*
Ga0129297_1000024873300010324Lake SedimentMVEEKTAKELKELLAELVDHSHGHHKAIHGLIKRVSELERRTKALERKAAK*
Ga0129297_1017019723300010324Lake SedimentMVEEKTARELKKLLAELVDHSHGHHKAIQGLSKRVNDLERRVKTLERKMK*
Ga0074046_1006341723300010339Bog Forest SoilVRGSDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRIEELERRVKTLERRT*
Ga0074046_1051120623300010339Bog Forest SoilMKRGGDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRIEELERKVKTLERRT*
Ga0074044_1027654633300010343Bog Forest SoilNLVEEKTARELKKLLSDLVDHSYGHHKAIHGLTKRIEELERRIKALERKR*
Ga0074044_1087726923300010343Bog Forest SoilVRGSDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLAKRIEELERRVKTLERRT*
Ga0136449_10055689623300010379Peatlands SoilLDLVEEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKALEDKR*
Ga0137716_10007576193300010938Hot Spring Fe-Si SedimentLVEEKTAKELKKLFGKLIDHSYGHHSAILGLWKRITELERRIRVLERKARK*
Ga0153915_1048795323300012931Freshwater WetlandsMVEEKTARELKKLLAELVDHSHGHHKAIDGLSKRVNELEKRVRILERRK*
Ga0153916_1030658533300012964Freshwater WetlandsLVEEKTAKELKKLFAELVDNSHGHHKAIDGLSKRVREPEQHVRALEKKTR*
Ga0153916_1209842623300012964Freshwater WetlandsLVEEKTARELKRLLAELVDHSHGHHKAIHGLSKRVEELERRVRTLERKAGKS*
Ga0187849_102070453300017929PeatlandMRGSDFLVEEKTARELKKLLNELVNHSYGHHKAIHGLSKRIEELERRVKTLERRT
Ga0187877_100080393300017931PeatlandLVEAKTAKELKRLLGELVDHSYGHHRAIDGLSKRVKELDARVRTLERKAGH
Ga0187775_1015790823300017939Tropical PeatlandMVEEKSARELKKLLNELVDHSHGHHEAIHGLAKKMKELERRVAKLERKK
Ga0187775_1027601823300017939Tropical PeatlandMWYLVEAKTAKELKRLLAELVDHSHGHHQAIDGLSKRVKELDARVRALERKVKG
Ga0187853_1023665523300017940PeatlandMRGSDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRIEELARRVKTLERRT
Ga0187850_1000424123300017941PeatlandLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRVEELERRVKTLQRRT
Ga0187779_1000998633300017959Tropical PeatlandMVEEKSARELKKLLNELVDHSHGHHEAIHGLAKKMEELERRVAKLERKK
Ga0187779_1003600443300017959Tropical PeatlandMVEEKTARELKKLLCELVDHSHGHHQAIHGLTKRIEELERRIARLERKK
Ga0187779_1003935823300017959Tropical PeatlandMVEEKTARELKKLLSELVDHSHGHHQAIHGLTKRMEELERKIAKLERKK
Ga0187779_1009898433300017959Tropical PeatlandLVEEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKALEHKR
Ga0187779_1091961913300017959Tropical PeatlandNRRRCKLVEEKTARELKKLLAEFVDHSYGHHKAIHGLIKRVEDLELRVRTLEGRK
Ga0187778_1058308623300017961Tropical PeatlandMVEEKTAKELKKLFNELVDHSHGHHQAIEGLSKRITRLERKVRELEHRKK
Ga0187776_1038914523300017966Tropical PeatlandMILVEEKTARELKQLFAELVDHSHGHHQAIDGLSKRVKELEKRVRELERKAS
Ga0187776_1075590923300017966Tropical PeatlandMVEEKSARQLKKLLNELVDHSHGHHETIHGLAKKMEELERRIAKLERKK
Ga0187776_1075700923300017966Tropical PeatlandLVEEKTARELKRLFAELVDHSHGHHKAIDGLSKRVKELEQRVRALERRES
Ga0187776_1133159223300017966Tropical PeatlandMVEEKTARELKKLLNELVDHSYGHHKAIHGLTKRVEELERRVKALEQMK
Ga0187781_1018711333300017972Tropical PeatlandMKGGSDFLVVEKTARALKKLLNELVDHSYGHHKAIHGLSKRVEELERRVKTLER
Ga0187780_1008956933300017973Tropical PeatlandMDTPKGYETSLVEEKTAKELKKLFSELVDHSHGHHQAIEGLSKRLTRLEQRVRSLEHRKK
Ga0187780_1010039513300017973Tropical PeatlandMVQEKTAKELKKLFAELVDHSHGHHQSIDGLAKRLVKLERRVAELERRAK
Ga0187780_1090099213300017973Tropical PeatlandLVEEKTARELKKLLAEFVDHSYGHHKAIHGLIKRVEDLELRVRTLEGRK
Ga0187777_1035123123300017974Tropical PeatlandLVEEKTARELKKLLNELVDHSSGHHKAIHGLTKRVEELERKVKALERQK
Ga0187782_1078513223300017975Tropical PeatlandMKRGSDFLVEEKTARALKKLLNELVDHSYGHHKAIHGLSKRVEELERRVKTLERKT
Ga0187815_1053837423300018001Freshwater SedimentVISIGRRWDLVEEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKTLEHKR
Ga0187868_118614023300018002PeatlandMRGSDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRVEELERKVKTLERRT
Ga0187878_109011423300018005PeatlandLVEAKTAKELKRLLAELVDHSHGHHQAIDGLSKRVKELDARVRALERKAKR
Ga0187866_132786713300018015PeatlandTIEAATVGDEFLVEEKTARELKKLLNELVDHSYGHHKAIHGIMKRVEELERRVKTLERRK
Ga0187886_101031473300018018PeatlandRGSDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLSKRVEELERRVKTLQRRT
Ga0187861_1049396813300018020PeatlandMRGSDFLVEEKTARELKKLLNELVNHSYGHHKAIHGLSKRIEELEIRVKTLERRT
Ga0187882_101778153300018021PeatlandLVEAKTAKELKRLLAELVDHSHGHHRAIEGLSKRVKELDARVRTLERKARH
Ga0187889_1040629213300018023PeatlandLVEEKTARELKKLLNELVDHSYGHHKAIHGIMKRVEELERRVKTLERRK
Ga0187787_1029916723300018029Tropical PeatlandVVEEKTARELKKLLNELVDHSYGHHKAIHGLTRRVEELERKLKNLERKA
Ga0187766_1032781723300018058Tropical PeatlandMVEEKTARELKKLLCELVDRSHGHHQAIHGLTKRIEDLERRIARIERK
Ga0187766_1091065913300018058Tropical PeatlandMDTPKRYETSLVEEKTAKELKKLFSELVDHSHGHHQAIEGLSKRLTRLEQRVRSLEHRKK
Ga0187784_1016593733300018062Tropical PeatlandLVEKKTAKELKKLLSELVDHSHGHHQAIEGLSKRLTQLERRVKTLEHGKK
Ga0187784_1027943823300018062Tropical PeatlandMVEEETARELKKLLSELVDHNYSYHKAIHGLTKRVEELERKIANLERKK
Ga0187784_1056338313300018062Tropical PeatlandMVQEKTAKELKKLFAELVDHSHGHHQSIDGLAKRLVKLERPIAELERRAK
Ga0187784_1115514613300018062Tropical PeatlandLQANRRPFMVEERTAKELKKLFAELVDHSHGHHQSIDGLAKRLAKLERRVTELERRAK
Ga0187773_1064793013300018064Tropical PeatlandGDRLMVEEKTARELKKLLSELVDHSHGHHQAIHGLTKKMEELERRIAKLERKK
Ga0187773_1074099313300018064Tropical PeatlandIGGMAMVEEKTARELKKLLNELVDHSYGHHKAIHGLTRRVEELEKRLKNLEQKR
Ga0187769_1005544433300018086Tropical PeatlandMDTPKRYETSLVEEKTAKELKKLFSELVDHSHGHHQAIDGLSKRLTRLEQRVRSLEHRKK
Ga0187769_1023856213300018086Tropical PeatlandMVEEKTAKELKKLFSELVDHSHGHHQAIEGLSKRITRLERKVRELEHRKK
Ga0187769_1041573213300018086Tropical PeatlandMVEEKTARELKKLLSELVDHSHGHHQAIEGLSKRLTHLERRVRELEHRKK
Ga0187769_1147131123300018086Tropical PeatlandMKGGSDFLVEEKTARELKKLLNELVDHSYGHHKAIHGLMKRVEELERKVKNIERMK
Ga0187771_1004838133300018088Tropical PeatlandVEEKTAKELKKLLGELVDHSHGHHQAIEGLSKRLTHLERRVRELEHRKK
Ga0187771_1070344913300018088Tropical PeatlandLVEERTARELKKLLSELVDHSHGHHQAIEGLSKRLTHLERRVRELEHRKK
Ga0187771_1073139413300018088Tropical PeatlandMKRGSDFLVEEKTARALKKLLNELVDHSYGHHKAIHGLSKRVEELERRVKTLERRT
Ga0187771_1073830313300018088Tropical PeatlandEKTAKELKKLFAELVDHSHGHHQSIDGLAKRLAKLERRVAELERKAK
Ga0187771_1178955313300018088Tropical PeatlandSHLSWCIDLVEERTAKELKKLLSELVDHSHGHHQAIDGLSKRLTHLERRVRELEHRKK
Ga0187771_1180361913300018088Tropical PeatlandLVEERTARELKKLFAELVDHSHGHHQAIDGLSKHVKELEQRVRTLELRAG
Ga0187774_1002857433300018089Tropical PeatlandMILVEEKSARELKRLFAELVDHSHGHHQAIDGLSKRIKELEQRVRALEREVS
Ga0187774_1010365523300018089Tropical PeatlandMVGEKTARELKKLLVEIVDHRYGHHKAIHGLSKRVSELERRVRSLERKKQGDR
Ga0187774_1028330023300018089Tropical PeatlandLVEEKTARELKRLFAELVDHSHGHHKAIDGLSKRVKELEQRVRALERGES
Ga0187770_1037204833300018090Tropical PeatlandMKGGSDFLVEEKTARALKKLLNELVDHSYGHHKAIHGLSKRVEELERRVKTLERRT
Ga0187770_1042673313300018090Tropical PeatlandKELKKLFSELVDHSHGHHQAIDGLSKRLTRLEQRVRSLEHRKK
Ga0187796_137729513300019264PeatlandEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKALEHKR
Ga0187794_155616023300019273PeatlandVEEKTARELKKLLCELVDHSHGHHQAIHGLTKRIEEVERKIARLERKK
Ga0187794_156588523300019273PeatlandEEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKALEHKR
Ga0212089_10000124413300022551Lake SedimentMVEEKTAKELKELLAELVDHSHGHHKAIHGLIKRVSELERRTKALERKAAK
Ga0212089_1010337423300022551Lake SedimentMVEEKTARELKKLLAELVDHSHGHHKAIQGLSKRVNDLERRVKTLERKMK
Ga0209126_100103673300025119SoilLVEEKTARELKKLFAELVDHSHGHHKAIHGLSKRVKELEQRVRTLERRTGSS
Ga0209725_107234233300025144Lake SedimentMVEEKTARELKKLLAELVDHSHGHHKAIQGLSKRVNDLERRVKALE
Ga0209520_1007868623300025319SoilLVEEKTARELKKLLGEIVDHSYGHHKAIHGFVRRMKELEQRVRTLERKATT
Ga0209446_118646213300027698Bog Forest SoilVEEKTARELKKLLSDLVDHSYGHHKAIHGLTKRIEQLERRIKALERKR
Ga0209039_1018520123300027825Bog Forest SoilITRIFIGGRLDLVEEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKALEHKR
(restricted) Ga0315307_117146713300031593SedimentAKELKELLAELVDHSHGHHKAIHGLIKRVSELERRTKALERKAAK
(restricted) Ga0315306_1035932913300031806SedimentYLETDEARMVEEKTAKELKELLAELVDHSHGHHKAIHGLIKRVSELERRTKALERKAAK
Ga0315280_10003738193300031862SedimentLVEEKTARELKKLLAELVDHSHGHHKAIDGLSKRVTELEQRVRALERRKS
Ga0315280_1002219633300031862SedimentVEEKTAKELKKLLADLVDHSYGHHKAIDGLSKRVNELERRVRILERKATH
Ga0315289_1046067433300032046SedimentLVEEKTARELKKLFAELVDHSHGHHKAIHGLSKRVEELERRVKALERKTANS
Ga0315282_10000088353300032069SedimentLVEEKTARELKKLLADLVDHSYGHHKAIDGLSKRLNQLDRRVRNLERKASR
Ga0315282_1002717253300032069SedimentLVAEKTARELKKLLYELVDHSSGHHKAIYGLTKKIEELERKLKSIERRG
Ga0315282_1007802233300032069SedimentVEEKTAKELKKLLEDLVDHSYGHHKAIDGLSKRVNELERRVRILERKASR
Ga0315282_1023146813300032069SedimentLVEEKTARELKKLFAELVDHSHGHHKAIHGLSKRVEELERRVKA
Ga0315281_1069579713300032163SedimentEEKTARELKKLFAELVDHSHGHHKAIHGLSKRVEELERRVKALERKTANS
Ga0335070_1039313623300032829SoilMVEEKSARQLKKLLNELVDHSHGHHEAIHGLAKKMEELERRIAKLEQKK
Ga0335081_1185929523300032892SoilITGSWIEQASGRQLMVEEKSARQLKKLFNELVDHSHGHHEAIHGLAKKMEELERRIAKLEQKK
Ga0335084_1133775913300033004SoilWIEQISGRQLMVEEKSARQLKKLLNELVDHSHGHHEAIHGLAKKMEELERRIAKLEQKK
Ga0326728_1067303223300033402Peat SoilLTTKARVGGGVLVEEKTARELKKLLTELVDHSYGHHKAIHGLMKRVEELERRVKTLERGK
Ga0326727_1028157813300033405Peat SoilLVEEKTARELKKLLNELVDHSAGHHKAIHGLAKRVEELERKVKTLERRK
Ga0326727_1104507313300033405Peat SoilLVEEKTAKELKKLFNELVDHSYGHHKALHGLTKRVEKLERKIKNLEHKT
Ga0314867_009714_186_3323300033808PeatlandVEEKTARELKKLLNDLVDHSYGHHKAIHGLTKRIEELERRIKALEHKR
Ga0314861_0051659_1401_15533300033977PeatlandLVEEKTARELKKLLGELVDHSHGHHQAIDGLSKRLTHLERRVRELERRRK
Ga0314861_0069224_1199_13513300033977PeatlandLVEEKTARELKKLLGELVDHSHGHHQAIDGLSKRLTQLERRVRNLEHRSK
Ga0326724_0008596_10116_102623300034091Peat SoilVKEKTARELKKLLNDLVDHSYGHHKAIHGLTKRVEELERRIKALEHKP


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