Metagenome / Metatranscriptome Family F093055

Basic Information
Family ID	F093055
Family Type	Metagenome / Metatranscriptome
Number of Sequences	106
Average Sequence Length	42 residues
Representative Sequence	LPVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTKL
Number of Associated Samples	68
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.22

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (78.302 % of family members)
Environment Ontology (ENVO)	Unclassified (96.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (81.132 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.00% β-sheet: 0.00% Coil/Unstructured: 80.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13855	LRR_8	0.94

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	97.17%
Environmental	Environmental	1.89%
Engineered	Engineered	0.94%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	95.28%
Terrestrial	Environmental → Terrestrial	1.89%
Mammals	Host-Associated → Mammals	1.89%
Bioreactor	Engineered → Bioreactor	0.94%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	83.02%
Unclassified	Host-Associated → Plants → Unclassified	10.38%
Soil	Environmental → Terrestrial → Soil	1.89%
Digestive System	Host-Associated → Mammals → Digestive System	1.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.89%
Unclassified	Engineered → Bioreactor → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	83.02%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	10.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	1.89%
Foregut	Host-Associated → Mammals → Digestive System → Foregut	1.89%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.89%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	83.02%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	10.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	1.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.89%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen	0.94%
Unclassified	Host-Associated → Mammals → Digestive System → Foregut → Unclassified	0.94%
Unclassified	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified	0.94%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	78.30%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	10.38%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	4.72%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.89%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.89%
Rumen	Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen	0.94%
Fungi-Associated Bovine Rumen	Host-Associated → Mammals → Digestive System → Foregut → Unclassified → Fungi-Associated Bovine Rumen	0.94%
Switchgrass Degrading	Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Switchgrass Degrading	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300009872	Cow rumen microbiome (microbial/fungal) from cows held on UI at Urbana campus farm, Champaign, IL - Switchgrass. Combined Assembly of Gp0148675, Gp0148676	Host-Associated	Open in IMG/M
3300009973	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_222 metaG	Host-Associated	Open in IMG/M
3300009977	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_91 metaG	Host-Associated	Open in IMG/M
3300009980	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaG	Host-Associated	Open in IMG/M
3300009981	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG	Host-Associated	Open in IMG/M
3300009992	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_108 metaG	Host-Associated	Open in IMG/M
3300009994	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaG	Host-Associated	Open in IMG/M
3300009995	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012949	Switchgrass enrichment cultures co-assembly	Engineered	Open in IMG/M
3300015270	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015280	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015284	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015290	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015293	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015306	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015309	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015310	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015313	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015315	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015316	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015320	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015324	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015325	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015327	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015328	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015330	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015332	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015334	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015338	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017432	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017440	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017445	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017447	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017693	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300017694	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028142	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028149	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028154	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028477	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300028523	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_05JUN2017_LD1	Host-Associated	Open in IMG/M
3300031118	Coassembly of Cow X and Y Switchgrass	Host-Associated	Open in IMG/M
3300032469	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032502	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032514	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12SEP2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032589	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032591	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_31MAY2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032689	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032699	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032843	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032845	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_05JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032915	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_07AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032916	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032918	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_05JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032959	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0130079_135154891	3300009872	Rumen	EGSHANLSVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTEL*
Ga0105136_1030001	3300009973	Switchgrass Associated	VGIVLAGKYRDLTKTLHGRQVVFEPVKVLKTSTKL*
Ga0105141_1235801	3300009977	Switchgrass Associated	GIVLARKYRDLPKTRHGRQVVFELVKVLKTSTKL*
Ga0105135_1007752	3300009980	Switchgrass Associated	LLVGIVLAGKHGDLIKTRHGRQVVFEPVKVLKTSTKL*
Ga0105135_1084671	3300009980	Switchgrass Associated	GIVLAGKHQGLPKTRHGHQVVFEPIMVLKTSTML*
Ga0105133_1008172	3300009981	Switchgrass Associated	PVGIVLAGKHRDLTKTRHGRQVIFEPVKVLKTSTKL*
Ga0105133_1144151	3300009981	Switchgrass Associated	DLGSHALQEVSHANLLVGIVLARKHRDLPKTHQGRQVVFEPVKVLKTSTKL*
Ga0105120_10176231	3300009992	Switchgrass Associated	LPISIVLAGKHRDLTKTRHGRQMVFEPVKLLKTLTLL*
Ga0105120_10552871	3300009992	Switchgrass Associated	DIPDLGSHALQEGTHANLPISIVLAGKHWDLTKTRHGRQVIFEPVKVLKTSTKL*
Ga0105120_10561401	3300009992	Switchgrass Associated	LVGIVLARKHRDLTKTRHGRQVVFEPVKVLKTSTKL*
Ga0105126_10500431	3300009994	Switchgrass Associated	EDSHADLPISIILAGKHRDFTKARHGRQVVFEPVKVLKTSTKL*
Ga0105139_11152531	3300009995	Switchgrass Associated	ALQEGSHANLPLGIILAGKHRDLTKTRHGRRVVFELVKVLKTSTKL*
Ga0134125_126888662	3300010371	Terrestrial Soil	VLGDIPDLGSHALQKGTHANLLISIVLAEKHWDLTKTRHGRQVIFEPVKVLKTSTKL*
Ga0134121_121071852	3300010401	Terrestrial Soil	LPISIVLAGEHWDLTKTRHGRQVVFEPVKVLKTSTKL*
Ga0153798_102577291	3300012949	Switchgrass Degrading	ALQEGPHANLSVGIVLADKHRDLTKTRHGRQMVFEPVRVMKTLTKL*
Ga0182183_10234631	3300015270	Switchgrass Phyllosphere	NLGSHALQEGSHANLPVGIVLAGKHRDLPKTLHGRQVVFEPVKVLKTSTKL*
Ga0182100_10426832	3300015280	Switchgrass Phyllosphere	LGDLPKLGSHTLQEGSHTHLPVSIVLAGKHGDLTKTLYGRQVVFEPVKVLKTSTKL*
Ga0182101_10311301	3300015284	Switchgrass Phyllosphere	GIILAGKYRDLTKTRHGRRVVFEPVKVLKTSTKL*
Ga0182105_10030241	3300015290	Switchgrass Phyllosphere	LQEGMHSNLLVGIVLAGKHRDFTQTRNGRQVVFDPVRVIKTLTKL*
Ga0182103_10154061	3300015293	Switchgrass Phyllosphere	LPISIVLARKHRDLPKTCHGRQVVFEPVRVMKTLIKL*
Ga0182103_10219981	3300015293	Switchgrass Phyllosphere	GNIPDLGSHTLQEGSHANLSVGIVLAGKHRDLPKTRHGRQVVFDPVKVLKTSTKL*
Ga0182103_10407811	3300015293	Switchgrass Phyllosphere	SHALQEGSHANLPVGLVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTKF*
Ga0182184_10970101	3300015301	Switchgrass Phyllosphere	GIVLAGKHRDLTKTRHGRQVVFEPVKVLKTSTKL*
Ga0182180_10192571	3300015306	Switchgrass Phyllosphere	LQEGSHPNLPVSIVLTGKYRDLPKTRYGREVVFEPVKVLKTSTEL*
Ga0182098_10704951	3300015309	Switchgrass Phyllosphere	NLPVGLILAGKHRDLTKTRHGRRVVFEPVKVLKTSTEL*
Ga0182162_10099401	3300015310	Switchgrass Phyllosphere	EGTHANLLISIVLIGKHWDLTKTRHSRKVVFELVKVLKTSTKY*
Ga0182182_10134611	3300015311	Switchgrass Phyllosphere	SMVLAGKHRDLTKTRHSRQVVFEPVKVLKTSIKL*
Ga0182182_10745342	3300015311	Switchgrass Phyllosphere	GIVLAGKHRDLPKTRHGRQVVFEPVKVLKTSTKL*
Ga0182182_10828161	3300015311	Switchgrass Phyllosphere	SIVIAGKHWDLTKTRYGRQVVFEPVKVLKTLTKL*
Ga0182164_10389991	3300015313	Switchgrass Phyllosphere	NLGSQALQENPHANLPVSIVLAGKHRDFTKTYHGRQRVFEPVRVMKTLTKL*
Ga0182164_10414571	3300015313	Switchgrass Phyllosphere	SIVLAGKYRDLTKTHHGRQMVFEPVKVLKTLTKL*
Ga0182164_10540721	3300015313	Switchgrass Phyllosphere	ISIVLASKHRDFTKTRHSRQMVFEPVKVLKTLTKL*
Ga0182164_11063071	3300015313	Switchgrass Phyllosphere	PNLGSHALQEGSHANLLISIVLAEKHGDLSKTCHGRQVVFEPVKVLKTSTKL*
Ga0182120_10543311	3300015315	Switchgrass Phyllosphere	LQKSPHANLLVGIVLTGKHRDLTKTLHGRQMVFEPVRVMKALTKL*
Ga0182120_11254901	3300015315	Switchgrass Phyllosphere	PYLGSHALQESSHANLLVGIVLAGKHWNLTKTRHGRQVVFEPVKVLKTSTKL*
Ga0182121_10367681	3300015316	Switchgrass Phyllosphere	ANLPIGIVLAGKHRDLTKTRHGRQVVFEPVKVLKTSAKL*
Ga0182165_10047411	3300015320	Switchgrass Phyllosphere	LPVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTKL*
Ga0182165_10814711	3300015320	Switchgrass Phyllosphere	PVGIVLAGKHRDLTKTRHGHQVVFEPVKLLKTSTKL*
Ga0182134_10726001	3300015324	Switchgrass Phyllosphere	ANLPVSIILAEKQQDLTKTRHDRLVVFEPVKVLKTLTKL*
Ga0182134_10950771	3300015324	Switchgrass Phyllosphere	PVGIILAGKHRDLTKTRHGRRVVFEPVRVLKTSTEL*
Ga0182148_10298792	3300015325	Switchgrass Phyllosphere	SHANLPVGIVLAGKHRDLTKTRYGRQVVFEPVKVLKTSTKL*
Ga0182148_11089822	3300015325	Switchgrass Phyllosphere	ANLPVGIVLAGKHRDLPKTRRGRQVVFEPVKVLKISTKL*
Ga0182114_10567321	3300015327	Switchgrass Phyllosphere	RIVLAGKDRDLPKTRHGRQVVFEPVRVMKTLTKL*
Ga0182114_11071911	3300015327	Switchgrass Phyllosphere	SNLGSQALQEGPHANLPVGVVLAGKHRDLTKTCHGRLMVFEPVRVMKTLTKL*
Ga0182153_10138451	3300015328	Switchgrass Phyllosphere	SIVLAGKYRDLTKTRHGRQMVFEPVKILKTLTKLQIKY*
Ga0182153_11129021	3300015328	Switchgrass Phyllosphere	GIVLAGKYRDLTKTRHGRRVVFEPVKVLKTSIEL*
Ga0182152_10526581	3300015330	Switchgrass Phyllosphere	ANLPVGIVLASKHRDLTKTLYGRKMVFEPVRVMKTLTKL*
Ga0182117_11438211	3300015332	Switchgrass Phyllosphere	PNLGSYALQEGSHANLPISIVLVGKHRDLPKTCHGRQVVFELVRVMKTLTKL*
Ga0182117_11638881	3300015332	Switchgrass Phyllosphere	LPISIVLAGKHSDLTKTRDGRQMVFEPVKVLKTLTKL*
Ga0182117_11662011	3300015332	Switchgrass Phyllosphere	PISIVLAGKHWDLTKTRYGRQVVFEPVKILKTSTKL*
Ga0182132_10604082	3300015334	Switchgrass Phyllosphere	VSLVLGDLPNLGSHALQEVSHTHLPISIVLAGKHRDLTKTRHGRQMIFELVKVLKTSTKL
Ga0182132_10910472	3300015334	Switchgrass Phyllosphere	HANLLVGIVLAGKHRDLTKTRHGRRVVFELVKVLKTSTEC*
Ga0182132_11648681	3300015334	Switchgrass Phyllosphere	PVGIVLAGKHRDLTKTRHGRQVVFEPVEVLKTSTKL*
Ga0182116_11141981	3300015335	Switchgrass Phyllosphere	ANLLVSIVLVGKHRDLTKTCHGRQMVFEPIRVMKTITKL*
Ga0182116_11658711	3300015335	Switchgrass Phyllosphere	GIVLAGKHQDLTKTRHGRRVVFEPVKVLKTSTKL*
Ga0182116_11781601	3300015335	Switchgrass Phyllosphere	LPVGIVLAGKHWDLPKIRHGRQVVFEPVKVLKTSTEL*
Ga0182150_10587991	3300015336	Switchgrass Phyllosphere	GIVLAGKHRDLTKTCHGRQMVFEPVRVMKTLTKL*
Ga0182150_10816301	3300015336	Switchgrass Phyllosphere	SKVLAGKHWDLTKTRQGRQVVFELVKVLKTSTKL*
Ga0182150_11413961	3300015336	Switchgrass Phyllosphere	QEGMHVNLPISIVLAGKHWDFTKTRHGRQEVFEPVRVLKTLTLL*
Ga0182151_10721901	3300015337	Switchgrass Phyllosphere	ALQEGSHANLSVGIILAGKHGDLTKTRHGRRMVFEPVKVLKTSTKL*
Ga0182137_10187393	3300015338	Switchgrass Phyllosphere	ANLPVGIVLAGKHRDLTKTPHGRQVVFEPVKVLKTSTKL*
Ga0182137_11574331	3300015338	Switchgrass Phyllosphere	HVSLVLGNIPDLGSHALQEDSHANLLVGIVLAGKHGDLTKTCHGRQVVFEPVRVMKTLTKL*
Ga0182133_10107151	3300015340	Switchgrass Phyllosphere	GIVLAGKHRDLTKTPHGRQVVFEPVKVLKTSTKL*
Ga0182133_10115831	3300015340	Switchgrass Phyllosphere	PVGIVLAGKHGDLTKTRHGRQVVFEPVKVLKTSTKL*
Ga0182115_10621001	3300015348	Switchgrass Phyllosphere	DLSNLGSHALQKGSHTHLPISIVLTGKHRDLTKTRHGRQVVFEPVKVLKTSTKL*
Ga0182115_10995131	3300015348	Switchgrass Phyllosphere	LPISIVLAGKHSDFTKTRHGRQMVFEPVKVLKTLTLL*
Ga0182115_11444921	3300015348	Switchgrass Phyllosphere	LQEGSHADLPISIVLTGKDRDLRKTLHGRQVVFELVRVMKTLTKL*
Ga0182185_10746913	3300015349	Switchgrass Phyllosphere	NIVLAGKHRDLTKTRHGREVVFEPVKVLKISTKL*
Ga0182185_11855251	3300015349	Switchgrass Phyllosphere	LVLGDIPDLGSHALQEGTHANLPISIILTEKHWDLTKTHHGRKVVFEPVKVLKTSTKL*
Ga0182169_10799981	3300015352	Switchgrass Phyllosphere	HANLPISIVLAGKHKDLPKTCHGSQVVFELVRVMKILTKL*
Ga0182169_13157221	3300015352	Switchgrass Phyllosphere	LQEGSHANLPVGIVLARKHRDLPKTRHGRQVIFEPVKVLKTSTKL*
Ga0182179_11253911	3300015353	Switchgrass Phyllosphere	PISIVLAGKHRDLTKTRHGRQMVFEPIKVLKTLTKL*
Ga0182179_12013441	3300015353	Switchgrass Phyllosphere	HANLPISIVLAGKHWDLTKTRQVVFELVKVLRTSTRL*
Ga0182179_13124971	3300015353	Switchgrass Phyllosphere	GIVLTGKYRDLTKTRHGRRVVFEPVKVLKTSTKL*
Ga0182167_12681191	3300015354	Switchgrass Phyllosphere	HALQEGSHANLPVGIVLAGKYRDLPKTRHGRQVVFELVKVLKTSTKL*
Ga0182167_12990111	3300015354	Switchgrass Phyllosphere	SILLAGKHGDLTKTRHGRQVIFEPVKVLKTSTKL*
Ga0182196_11104951	3300017432	Switchgrass Phyllosphere	NIPDFGSHALQEGSHANLPVGIVLAGKYRDLPKTRQVVFEPVKVLKTSTRL
Ga0182214_10353622	3300017440	Switchgrass Phyllosphere	NIPDLGSHALQESSHANLPVGIVLAGKYGDLPKTRHGHQVVFEPVKVLKTSTKL
Ga0182198_10509951	3300017445	Switchgrass Phyllosphere	GNIPDLGSHALQEDSHANLLVGIVLAGKHGDLTKTCHGRQVVFEPVKILKTSTKL
Ga0182198_11303231	3300017445	Switchgrass Phyllosphere	ANLPISIVLAGKYWDLPKTRHGHQVIFKPVKVLKTSTRL
Ga0182215_10317491	3300017447	Switchgrass Phyllosphere	GSHANLPISIVLAGKHGDLSKTRHGRQMVFELVKVLKTSTRL
Ga0182216_10390371	3300017693	Switchgrass Phyllosphere	HANLPISIVLAGKHWDLTKTRHDRQVVFEPVKVLKTSTKL
Ga0182216_10954591	3300017693	Switchgrass Phyllosphere	ANLLVSIVLTGKYRDFTKTCHGRQMVFELVRVMKALTKL
Ga0182211_11050431	3300017694	Switchgrass Phyllosphere	ANLPISIVLVEKYWDLSKTRHGHQVVFEPVKVLKTPTKL
Ga0182211_11597221	3300017694	Switchgrass Phyllosphere	GSYTHLPISIVLAGKHGDLTKTLYGRQVVFEPVKVLKTSTKL
Ga0207668_107112221	3300025972	Switchgrass Rhizosphere	EGSHANLSVSIVLAGKHRDLPKTRHGRQVIFEPVKVMKTSTKL
Ga0207668_113198911	3300025972	Switchgrass Rhizosphere	GSYALQEGTHTNLPVSIVLAGKHRDLTKTRPSRQVVFELIRVLKTLTKL
Ga0268347_10202022	3300028142	Phyllosphere	ANLPVSIVLAGKHRDLTKTYHGRQMVFEPVRVMKTLTKL
Ga0268353_1148261	3300028149	Phyllosphere	NLPISIVLAGKHGDLTKTRHGRQVVFEPVKVLKTSTKL
Ga0268341_10164061	3300028154	Phyllosphere	NLPDIGSHALQEGSHANLLVGIVLAGKHRNLTKTRHGRRVVFEPVKVLKTSTEL
Ga0268309_10035811	3300028477	Phyllosphere	VDIVLAGKHRDLPKTRHGRQVVFEPVKVLKTSTKL
Ga0268313_10113881	3300028523	Phyllosphere	LSVGIILAGKHRDFTKTRHGRRVVFEPVKVLKTSTEL
Ga0061019_135154891	3300031118	Fungi-Associated Bovine Rumen	EGSHANLSVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTEL
Ga0214491_11680191	3300032469	Switchgrass Phyllosphere	LLLGSLAIIPVSIVLAGIHRDLTKTRHGRRVVLEQVKVLKTSTKL
Ga0214490_10805111	3300032502	Switchgrass Phyllosphere	ISIVLAGKHWDLTKTCHGRQVVFELVKVLKTSTNL
Ga0214502_11013771	3300032514	Switchgrass Phyllosphere	PVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTKL
Ga0214500_10297621	3300032589	Switchgrass Phyllosphere	LPVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTKL
Ga0214484_10328131	3300032591	Switchgrass Phyllosphere	PVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTEL
Ga0214497_10242981	3300032689	Switchgrass Phyllosphere	SHALQEGSHTHLPISIILAGKHMDLTKTRHGRQVVFEPVKVLKTLTKL
Ga0214494_11071391	3300032699	Switchgrass Phyllosphere	PSGKHHVSLVFGNIPDLGSHALQEDSHANFLVGIVLAGKYRDLPKTCHCRQVIFEQVWVMKTLTKL
Ga0314736_10344901	3300032843	Switchgrass Phyllosphere	VGIVLAGKHRDLTMTRHGRQIIFEPVRVMKTLTNF
Ga0314727_10538891	3300032845	Switchgrass Phyllosphere	PVDIILARKHGDLTKTRHGRRVVFEPVKVLKTSTEL
Ga0314749_10377981	3300032915	Switchgrass Phyllosphere	PVGIILAGKHRDLTKTRHGRRVVFEPVKVLKTSTEL
Ga0314734_10503301	3300032916	Switchgrass Phyllosphere	LPISIVLAEKHCDLTKTRHGRQVVFEPVKVLKTSTLL
Ga0314726_1059431	3300032918	Switchgrass Phyllosphere	HALQEGSHANLPVGIVLAGKHRDLTKTRHGRRVVFEPVKVLKTSTKL
Ga0314738_10123472	3300032959	Switchgrass Phyllosphere	VKLVRGNFPDIGSQALQEGSHANLLVGIVLTGKHRDLTKTRHDRRVVFEPVKVLKTSTEL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.22
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.22
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F093055

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


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