Metagenome Family F093000

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F093000
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	61 residues
Representative Sequence	METHSIFKYTTERNGIHFIPHDKIEAFKKDPLFKNDEINEKLKADAYGLSPIFIINPKK
Number of Associated Samples	53
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	75.47 %
% of genes from short scaffolds (< 2000 bps)	90.57 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (88.679 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water (81.132 % of family members)
Environment Ontology (ENVO)	Unclassified (81.132 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline) (52.830 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.14% β-sheet: 12.64% Coil/Unstructured: 63.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF01541	GIY-YIG	3.77
PF02086	MethyltransfD12	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0338	DNA-adenine methylase	Replication, recombination and repair [L]	0.94
COG3392	Adenine-specific DNA methylase	Replication, recombination and repair [L]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
All Organisms	root	All Organisms	11.32 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Viruses	superkingdom	All Organisms → Viruses	9.43 %
cellular organisms	root	All Organisms → cellular organisms	1.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Varidnaviria	clade	All Organisms → Viruses → Varidnaviria	2.83 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Bamfordvirae	kingdom	All Organisms → Viruses → Varidnaviria → Bamfordvirae	2.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Preplasmiviricota	phylum	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota	2.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Maveriviricetes	class	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes	2.83 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Priklausovirales	order	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales	2.83 %
Marinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae	0.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Lavidaviridae	family	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae	2.83 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
unclassified Lavidaviridae	no rank	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae	2.83 %
unclassified Marinobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter	0.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	88.68 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	6.60 %
Qinghai Lake virophage	species	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Qinghai Lake virophage	1.89 %
Organic Lake virophage	species	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage	0.94 %
Marinobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	0.94 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.94 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005912\|Ga0075109_1177941	Not Available	676	Open in IMG/M
3300005912\|Ga0075109_1276204	Not Available	500	Open in IMG/M
3300005913\|Ga0075108_10064122	Not Available	1377	Open in IMG/M
3300005913\|Ga0075108_10286511	Not Available	548	Open in IMG/M
3300005914\|Ga0075117_1058502	Not Available	1213	Open in IMG/M
3300012029\|Ga0136572_1035056	Not Available	598	Open in IMG/M
3300012145\|Ga0136566_1066806	Not Available	569	Open in IMG/M
3300012269\|Ga0136560_1093033	Not Available	541	Open in IMG/M
3300012271\|Ga0136555_1070864	Not Available	765	Open in IMG/M
3300022821\|Ga0222673_1028283	Not Available	758	Open in IMG/M
3300022827\|Ga0222647_1068436	Not Available	513	Open in IMG/M
3300022842\|Ga0222632_1035453	Not Available	778	Open in IMG/M
3300022842\|Ga0222632_1037705	Not Available	748	Open in IMG/M
3300022842\|Ga0222632_1043762	Not Available	679	Open in IMG/M
3300022842\|Ga0222632_1047114	Not Available	648	Open in IMG/M
3300022842\|Ga0222632_1058357	Not Available	566	Open in IMG/M
3300022844\|Ga0222687_1009623	All Organisms → Viruses → Predicted Viral	2051	Open in IMG/M
3300022844\|Ga0222687_1010577	Not Available	1961	Open in IMG/M
3300022844\|Ga0222687_1018886	All Organisms → Viruses → Predicted Viral	1459	Open in IMG/M
3300022844\|Ga0222687_1019487	Not Available	1436	Open in IMG/M
3300022844\|Ga0222687_1029760	Not Available	1120	Open in IMG/M
3300022844\|Ga0222687_1036089	Not Available	990	Open in IMG/M
3300022844\|Ga0222687_1045969	Not Available	841	Open in IMG/M
3300022844\|Ga0222687_1088469	Not Available	521	Open in IMG/M
3300022848\|Ga0222674_1050459	Not Available	673	Open in IMG/M
3300022867\|Ga0222629_1006444	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Qinghai Lake virophage	1852	Open in IMG/M
3300022867\|Ga0222629_1009882	Not Available	1456	Open in IMG/M
3300022867\|Ga0222629_1036546	Not Available	760	Open in IMG/M
3300022867\|Ga0222629_1069668	Not Available	534	Open in IMG/M
3300022885\|Ga0222662_1029998	Not Available	1182	Open in IMG/M
3300022885\|Ga0222662_1065643	Not Available	699	Open in IMG/M
3300022885\|Ga0222662_1073334	Not Available	648	Open in IMG/M
3300023227\|Ga0222690_1041047	Not Available	568	Open in IMG/M
3300023231\|Ga0222689_1031224	Not Available	695	Open in IMG/M
3300023231\|Ga0222689_1036390	Not Available	636	Open in IMG/M
3300023236\|Ga0222659_1025697	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Qinghai Lake virophage	880	Open in IMG/M
3300023243\|Ga0222630_1030584	Not Available	1103	Open in IMG/M
3300023243\|Ga0222630_1069721	Not Available	667	Open in IMG/M
3300023243\|Ga0222630_1092383	Not Available	553	Open in IMG/M
3300023243\|Ga0222630_1099750	Not Available	525	Open in IMG/M
3300023296\|Ga0222664_1053624	Not Available	656	Open in IMG/M
3300023297\|Ga0222640_1064787	Not Available	785	Open in IMG/M
3300023297\|Ga0222640_1117323	Not Available	542	Open in IMG/M
3300023501\|Ga0222686_1011185	Not Available	1438	Open in IMG/M
3300023501\|Ga0222686_1031328	Not Available	752	Open in IMG/M
3300025601\|Ga0208768_1128986	Not Available	700	Open in IMG/M
3300025736\|Ga0207997_1144357	Not Available	757	Open in IMG/M
3300028363\|Ga0306877_1019341	Not Available	856	Open in IMG/M
3300028375\|Ga0306865_1015520	Not Available	1990	Open in IMG/M
3300028375\|Ga0306865_1033709	Not Available	1292	Open in IMG/M
3300028375\|Ga0306865_1074999	Not Available	714	Open in IMG/M
3300028375\|Ga0306865_1086380	Not Available	629	Open in IMG/M
3300028405\|Ga0306909_115836	Not Available	762	Open in IMG/M
3300028405\|Ga0306909_121253	Not Available	629	Open in IMG/M
3300028412\|Ga0306910_1018459	Not Available	1218	Open in IMG/M
3300028412\|Ga0306910_1056737	Not Available	586	Open in IMG/M
3300031208\|Ga0307931_1005950	All Organisms → cellular organisms → Eukaryota	6568	Open in IMG/M
3300031208\|Ga0307931_1018268	All Organisms → Viruses → Varidnaviria → Bamfordvirae → Preplasmiviricota → Maveriviricetes → Priklausovirales → Lavidaviridae → unclassified Lavidaviridae → Organic Lake virophage	2419	Open in IMG/M
3300031208\|Ga0307931_1033472	All Organisms → Viruses → Predicted Viral	1315	Open in IMG/M
3300031208\|Ga0307931_1054543	Not Available	825	Open in IMG/M
3300031208\|Ga0307931_1055582	Not Available	811	Open in IMG/M
3300031208\|Ga0307931_1060562	Not Available	747	Open in IMG/M
3300031208\|Ga0307931_1069162	Not Available	661	Open in IMG/M
3300031208\|Ga0307931_1071510	Not Available	642	Open in IMG/M
3300031209\|Ga0307955_1035306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter → unclassified Marinobacter → Marinobacter sp.	962	Open in IMG/M
3300031209\|Ga0307955_1107494	Not Available	517	Open in IMG/M
3300031210\|Ga0307964_1008576	Not Available	2285	Open in IMG/M
3300031210\|Ga0307964_1020065	All Organisms → Viruses → Predicted Viral	1299	Open in IMG/M
3300031214\|Ga0307958_1079557	Not Available	522	Open in IMG/M
3300031215\|Ga0307935_1010202	Not Available	2067	Open in IMG/M
3300031215\|Ga0307935_1055465	Not Available	658	Open in IMG/M
3300031215\|Ga0307935_1069229	Not Available	562	Open in IMG/M
3300031216\|Ga0307980_1028621	Not Available	1306	Open in IMG/M
3300031217\|Ga0307940_1038985	All Organisms → Viruses → Predicted Viral	1017	Open in IMG/M
3300031220\|Ga0307939_1026148	Not Available	1441	Open in IMG/M
3300031222\|Ga0307972_1056771	Not Available	1948	Open in IMG/M
3300031222\|Ga0307972_1083662	Not Available	1411	Open in IMG/M
3300031222\|Ga0307972_1217219	Not Available	522	Open in IMG/M
3300031223\|Ga0307981_1076228	All Organisms → Viruses → Predicted Viral	1042	Open in IMG/M
3300031224\|Ga0307982_1018672	All Organisms → Viruses → Predicted Viral	4286	Open in IMG/M
3300031224\|Ga0307982_1064666	Not Available	1355	Open in IMG/M
3300031224\|Ga0307982_1081598	Not Available	1075	Open in IMG/M
3300031224\|Ga0307982_1113728	Not Available	763	Open in IMG/M
3300031224\|Ga0307982_1114286	Not Available	760	Open in IMG/M
3300031224\|Ga0307982_1154732	Not Available	560	Open in IMG/M
3300031329\|Ga0307934_1025102	Not Available	1965	Open in IMG/M
3300031329\|Ga0307934_1089265	Not Available	731	Open in IMG/M
3300031333\|Ga0307936_1080813	Not Available	940	Open in IMG/M
3300031333\|Ga0307936_1102189	Not Available	812	Open in IMG/M
3300031333\|Ga0307936_1110452	Not Available	772	Open in IMG/M
3300031339\|Ga0307932_1090968	Not Available	803	Open in IMG/M
3300031343\|Ga0307952_1105402	Not Available	843	Open in IMG/M
3300031382\|Ga0307971_1098142	Not Available	894	Open in IMG/M
3300031387\|Ga0307947_1039607	Not Available	1842	Open in IMG/M
3300031391\|Ga0307954_1015960	Not Available	3043	Open in IMG/M
3300031391\|Ga0307954_1135031	Not Available	599	Open in IMG/M
3300031392\|Ga0307975_1132670	Not Available	868	Open in IMG/M
3300031394\|Ga0307963_1118502	Not Available	769	Open in IMG/M
3300031394\|Ga0307963_1121307	Not Available	752	Open in IMG/M
3300031397\|Ga0307960_1126334	Not Available	739	Open in IMG/M
3300031398\|Ga0307979_1070259	Not Available	865	Open in IMG/M
3300031404\|Ga0307945_1075167	Not Available	1245	Open in IMG/M
3300031600\|Ga0307930_1164491	Not Available	668	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	100.00%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	100.00%

Habitat	Taxonomy	Distribution
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	81.13%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	18.87%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005912	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKD	Environmental	Open in IMG/M
3300005913	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1	Environmental	Open in IMG/M
3300005914	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKJ	Environmental	Open in IMG/M
3300012029	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #83	Environmental	Open in IMG/M
3300012145	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #2	Environmental	Open in IMG/M
3300012269	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #497	Environmental	Open in IMG/M
3300012271	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #432	Environmental	Open in IMG/M
3300022821	Saline water microbial communities from Ace Lake, Antarctica - #801	Environmental	Open in IMG/M
3300022827	Saline water microbial communities from Ace Lake, Antarctica - #333	Environmental	Open in IMG/M
3300022842	Saline water microbial communities from Ace Lake, Antarctica - #46	Environmental	Open in IMG/M
3300022844	Saline water microbial communities from Ace Lake, Antarctica - #1163	Environmental	Open in IMG/M
3300022848	Saline water microbial communities from Ace Lake, Antarctica - #866	Environmental	Open in IMG/M
3300022867	Saline water microbial communities from Ace Lake, Antarctica - #1	Environmental	Open in IMG/M
3300022885	Saline water microbial communities from Ace Lake, Antarctica - #600	Environmental	Open in IMG/M
3300023227	Saline water microbial communities from Ace Lake, Antarctica - #1234	Environmental	Open in IMG/M
3300023231	Saline water microbial communities from Ace Lake, Antarctica - #1231	Environmental	Open in IMG/M
3300023236	Saline water microbial communities from Ace Lake, Antarctica - #547	Environmental	Open in IMG/M
3300023243	Saline water microbial communities from Ace Lake, Antarctica - #3	Environmental	Open in IMG/M
3300023296	Saline water microbial communities from Ace Lake, Antarctica - #604	Environmental	Open in IMG/M
3300023297	Saline water microbial communities from Ace Lake, Antarctica - #187	Environmental	Open in IMG/M
3300023501	Saline water microbial communities from Ace Lake, Antarctica - #1159	Environmental	Open in IMG/M
3300025601	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1 (SPAdes)	Environmental	Open in IMG/M
3300025736	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UKN (SPAdes)	Environmental	Open in IMG/M
3300028363	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #2 (v2)	Environmental	Open in IMG/M
3300028375	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Torckler E5 #431 (v2)	Environmental	Open in IMG/M
3300028405	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #697 (v2)	Environmental	Open in IMG/M
3300028412	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 2 #698 (v2)	Environmental	Open in IMG/M
3300031208	Saline water microbial communities from Organic Lake, Antarctica - #47	Environmental	Open in IMG/M
3300031209	Saline water microbial communities from Organic Lake, Antarctica - #439	Environmental	Open in IMG/M
3300031210	Saline water microbial communities from Organic Lake, Antarctica - #596	Environmental	Open in IMG/M
3300031211	Saline water microbial communities from Organic Lake, Antarctica - #784	Environmental	Open in IMG/M
3300031214	Saline water microbial communities from Organic Lake, Antarctica - #492	Environmental	Open in IMG/M
3300031215	Saline water microbial communities from Organic Lake, Antarctica - #92	Environmental	Open in IMG/M
3300031216	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1060	Environmental	Open in IMG/M
3300031217	Saline water microbial communities from Organic Lake, Antarctica - #124	Environmental	Open in IMG/M
3300031220	Saline water microbial communities from Organic Lake, Antarctica - #122	Environmental	Open in IMG/M
3300031222	Saline water microbial communities from Organic Lake, Antarctica - #780	Environmental	Open in IMG/M
3300031223	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #987	Environmental	Open in IMG/M
3300031224	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #989	Environmental	Open in IMG/M
3300031243	Saline water microbial communities from Organic Lake, Antarctica - #712	Environmental	Open in IMG/M
3300031329	Saline water microbial communities from Organic Lake, Antarctica - #90	Environmental	Open in IMG/M
3300031333	Saline water microbial communities from Organic Lake, Antarctica - #1	Environmental	Open in IMG/M
3300031339	Saline water microbial communities from Organic Lake, Antarctica - #48	Environmental	Open in IMG/M
3300031343	Saline water microbial communities from Organic Lake, Antarctica - #376	Environmental	Open in IMG/M
3300031382	Saline water microbial communities from Organic Lake, Antarctica - #714	Environmental	Open in IMG/M
3300031387	Saline water microbial communities from Organic Lake, Antarctica - #232	Environmental	Open in IMG/M
3300031391	Saline water microbial communities from Organic Lake, Antarctica - #437	Environmental	Open in IMG/M
3300031392	Saline water microbial communities from Organic Lake, Antarctica - #917	Environmental	Open in IMG/M
3300031394	Saline water microbial communities from Organic Lake, Antarctica - #594	Environmental	Open in IMG/M
3300031397	Saline water microbial communities from Organic Lake, Antarctica - #542	Environmental	Open in IMG/M
3300031398	Marine microbial communities from Ellis Fjord, Antarctic Ocean - #1058	Environmental	Open in IMG/M
3300031404	Saline water microbial communities from Organic Lake, Antarctica - #228	Environmental	Open in IMG/M
3300031600	Saline water microbial communities from Organic Lake, Antarctica - #46	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0075109_11779412	3300005912	Saline Lake	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKINKYT*
Ga0075109_12762041	3300005912	Saline Lake	METQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTP
Ga0075108_100641223	3300005913	Saline Lake	METQSIFKYTTQRNGIHFIPHDKIEQFKKDPLYKNDEINEKLKADAYGLSPI
Ga0075108_102865111	3300005913	Saline Lake	IYMETKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLTPIFIINPKKINKYK*
Ga0075117_10585021	3300005914	Saline Lake	METHSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYT
Ga0136572_10350562	3300012029	Saline Lake	METHSIFKYTTERNGIHFIPHDRIEQFKKDPLFKNDEINEKLKADMYGLSPIFIINPKKIKT
Ga0136566_10668061	3300012145	Saline Lake	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADAYGLSPIF
Ga0136560_10930331	3300012269	Saline Lake	METHSIFKYTTERNGIHFIPHDRIEQFKKDPLFKNDEINEKLKADMYGLSPI
Ga0136555_10708642	3300012271	Saline Lake	METQSIFKYTTQRNGIHFIPHEKIQAFKIDPLFKNDEIFEKLKPDAYGLSPIFIINGNL*
Ga0222673_10282831	3300022821	Saline Water	MDVHSIFKYTIERNGIHYIPHDKIEAFKKDPLFKNDDINEKLKADAYGLSPIFIINPKKIKTYYTSVLRKKIK
Ga0222647_10684362	3300022827	Saline Water	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLTPIFIINPKKINKYT
Ga0222632_10354532	3300022842	Saline Water	METQSIFKYTTQRNGIHYIPHEKIEQFKKDPLFKNDEINEKLKADAYGLSPILIINPKKINTYYTPLLQ
Ga0222632_10377052	3300022842	Saline Water	METHSIFKYTTERHGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTP
Ga0222632_10437622	3300022842	Saline Water	MDVHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADEYGLSPIFIINPNKIAFYDS
Ga0222632_10471141	3300022842	Saline Water	MDVHSIFKYTIERNGIHYIPHDKIEAFKKDPLFKNDDINEKLKADAYGLSPIFIINPKKIKTYYTSVLRKRIK
Ga0222632_10583572	3300022842	Saline Water	METHSIFKYTTERNGIHYILHDKIEQFKKDPLFKNDDINEKLKADAYGLSPIFIIN
Ga0222687_10096233	3300022844	Saline Water	MDVHSIFKYTIERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIF
Ga0222687_10105774	3300022844	Saline Water	METQSIFKYTTQRNGIHYIPHEKIEQFKKDPLFKNDEINEKLKADAYGLSPIL
Ga0222687_10188861	3300022844	Saline Water	MEIHSIFKYTTERNGIHYIPHEKIEAFKKDPLFKNDEINEKLKADEYGLSPIFIIDPKKIKMYNDLLH
Ga0222687_10194871	3300022844	Saline Water	MDVHSIFKYTIERNGIHFIPHDRIEAFKKDPLFKNDETNEKLKADAYGLLPIFIINPKKIKTYYTSVLRKQIK
Ga0222687_10297604	3300022844	Saline Water	METHSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINENLKADAFGLSSIFIINPKKYKRTTL
Ga0222687_10360893	3300022844	Saline Water	METQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIF
Ga0222687_10459691	3300022844	Saline Water	METQSIFKYTTQRNGIHYIPHEKIEQFKKDPLFKNDEINEKLKPDAYGLSPIFVINPKRFILTTLLYLRKK
Ga0222687_10884691	3300022844	Saline Water	MEIQSIFKYTKQQNGIHFIPHDKIEKFKKDPLFKNDEINEKLKADAYGLSPILIINPKK
Ga0222674_10504592	3300022848	Saline Water	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLTPIFIINPKKINKYK
Ga0222629_10064444	3300022867	Saline Water	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFI
Ga0222629_10098823	3300022867	Saline Water	METHSIFKYTTERNGIHYIPHDKIEAFKKDPLFKNDQINEKLKADEYGLSP
Ga0222629_10365463	3300022867	Saline Water	METQSIFKYTTQRNGIHFIPHDKNEQFKKDPLFKNDEINEKLKADAYGLSPILIIN
Ga0222629_10696681	3300022867	Saline Water	METHSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINENLKADAFGLSSIFIINPK
Ga0222662_10299981	3300022885	Saline Water	KYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLTPIFIINPKKINKYT
Ga0222662_10656432	3300022885	Saline Water	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFII
Ga0222662_10733341	3300022885	Saline Water	MDVHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADEYGLSPIFIINPKKIKTYYTSVLRKKIK
Ga0222690_10410471	3300023227	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFIINPKKIKTYNDLL
Ga0222689_10312242	3300023231	Saline Water	METLSIFKYTTQRNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPILI
Ga0222689_10363902	3300023231	Saline Water	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKINKYK
Ga0222659_10256973	3300023236	Saline Water	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIF
Ga0222630_10305841	3300023243	Saline Water	MDIHSIFKYTIERNGIHFIPHDRIEAFKKDPLFKNDEINDKLKADAYGLSPIFIINPKKIKTYYTSVLRKQIK
Ga0222630_10697211	3300023243	Saline Water	MYMETQSIFKYTKQQNGINYIPHENFEQFKKDPLFKNDEINDKLKADAYGLMPILIINPKKINT
Ga0222630_10923833	3300023243	Saline Water	METHSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINENLKADAFGL
Ga0222630_10997502	3300023243	Saline Water	METHSIFKYTTERNVIHFIPHEKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKI
Ga0222664_10536242	3300023296	Saline Water	MDVHSIFKYTIERNGIHYIPHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFIINP
Ga0222640_10647871	3300023297	Saline Water	TTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKINKYT
Ga0222640_11173232	3300023297	Saline Water	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINP
Ga0222686_10111854	3300023501	Saline Water	METQSIFKYTTQRNGIHYIPHEKIEQFKKDPLFKNDEINENLKADAYGLSPILIINPKKINTYYTPLL
Ga0222686_10313281	3300023501	Saline Water	FHKITSNIYMETKSIFKYTTQRNGIHFILHDKIQAFMKDPLFKNDEINEKLKADTYGLSPIFIINPKKINKYT
Ga0208768_11289861	3300025601	Saline Lake	METQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTPLL
Ga0207997_11443572	3300025736	Saline Lake	METKSIFKYTTQRNGIHFILHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKI
Ga0306877_10193413	3300028363	Saline Lake	METQSIFKYTTQRNGIHFIPHEKIQAFKIDPLFKNDEIFEKLKPDAYGLSPIFIINPKKIHTY
Ga0306865_10155203	3300028375	Saline Lake	METQSIFKYTIQRNGIHFIPHDKIEEFKKDPLFKNDEINEKLKADSYGLSPILIINPKKINTYYTPLL
Ga0306865_10337093	3300028375	Saline Lake	METQSIFKYTTQRNGIHFIPHDKIQAFKKDPLFKNDEIFEKLKPDAYGLSPIFIINPKKISTYF
Ga0306865_10749991	3300028375	Saline Lake	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGL
Ga0306865_10863801	3300028375	Saline Lake	MEAQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDELFEKLKADLYGLSPIFIINPKKIKT
Ga0306909_1158362	3300028405	Saline Lake	METQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADMYGLSPIFIIN
Ga0306909_1212531	3300028405	Saline Lake	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFIINPNKI
Ga0306910_10184593	3300028412	Saline Lake	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFIINPKKIKTYNDLLH
Ga0306910_10567371	3300028412	Saline Lake	METQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADMYGLSPIFIINPKK
Ga0307931_10059504	3300031208	Saline Water	METQSTERNGIHFITHDKIEQFKKDPLFKNDELFEELKAKLYALSPISIINPKKNQNLLRSFTEENE
Ga0307931_10182681	3300031208	Saline Water	MDVHSIFKYTIERTGIHFIPHDRIEAFKKDPLFKNDEINDKLKADAYGLSPIFIINPKK
Ga0307931_10334721	3300031208	Saline Water	METQSIFKYTTERNGIHFIPHDKIEKFKKDPLFKDDELFEKLKADLYGLSPIFIINPKKIKTYYAPLL
Ga0307931_10545431	3300031208	Saline Water	METQSIFKYTTQRNGIHFIPHDKIKQFMKDPLFKNDEIFEKLKPDAYGLSPIFIINPKKIHTYYTPLL
Ga0307931_10555822	3300031208	Saline Water	QSIFKYTTERNGIHFIPHDKIEQFKKDSLFKDDEINEKLKADAYGLSAILFINPNKIKFY
Ga0307931_10605621	3300031208	Saline Water	METHSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTPL
Ga0307931_10691621	3300031208	Saline Water	METKSIFKYTTQRNGIHFIPHEKIEAFMKDPLFKNDEINEKLKADTYGLSPIFIINPKK
Ga0307931_10715102	3300031208	Saline Water	METQSIFKYTIERNGIHFIPHDKIQAFKKDPLFKNDEIFEKLKPDAYGLSPIFIINPKKIHTYYTPLLKK
Ga0307955_10353062	3300031209	Saline Water	METKSIFKYTTQRNGIHFIPHEKIEAFMKDPLFKNDEINEKLKADTYGLSPIFIINPKKINKYTNYKNIKSLGKSIL
Ga0307955_11074941	3300031209	Saline Water	MDVHSIFKYTIERNGIHFIPHDRIEQFKKDPLFKNDEINEKLKADMYGLSPIFIINPKKIKTHY
Ga0307964_10085761	3300031210	Saline Water	METKSIFKYTTQRNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFII
Ga0307964_10200651	3300031210	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFII
Ga0307974_11595742	3300031211	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKA
Ga0307958_10795572	3300031214	Saline Water	METKSIFKYTTQRNGIHFIPHDKIEAFMKDPLFKNDEINEKLKADTYGLSPIFIINPKKINKYTNYKNIKSLGKSIL
Ga0307935_10102023	3300031215	Saline Water	METKSIFKYTTQRNGIHYIPHDKIEQFKKDPLFKNDEINEKLKADTYGLSPIFIINPKKINKYTK
Ga0307935_10554652	3300031215	Saline Water	METKSIFKYTTQRNGIHFIPHEKIEQFKKDPLFKNDEINEKLKADTYGLSPIFIINPK
Ga0307935_10692292	3300031215	Saline Water	METKSIFKYTTQRNGIHYIPHDKIQAFMKDPLFKNDEINEKLKADTYGLSPIFIINPKKINKYTNY
Ga0307980_10286211	3300031216	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADAYGLSPIFIINPNKI
Ga0307940_10389853	3300031217	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPI
Ga0307939_10261483	3300031220	Saline Water	METQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADMYGLSPI
Ga0307972_10567713	3300031222	Saline Water	METQSIFKYTIQRNGIHFIPHDKIEEFKKDPLFKNDEINEILKADSYGLSPILIIN
Ga0307972_10836623	3300031222	Saline Water	METQSIFKYTTERNGIHFISHDKIEEFKKDPLFKNDKIFEKLKADMYGLSPIFIINPKKIKTH
Ga0307972_12172191	3300031222	Saline Water	MDVHSIFKYTIERNGIHIIPHDRIEAFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTSVLRK
Ga0307981_10762282	3300031223	Saline Water	METHSIFKYTTERNGIHYIPHDKIEAFKKDPLFKNDEINEKLKADEYGLSPIFIIDPKKIKMYNDLLH
Ga0307982_101867211	3300031224	Saline Water	METQSIFKYTTERNGIHFIPRDKIEQFKKDPLFKNDEINEKLKADAYGLMPILIINPK
Ga0307982_10646663	3300031224	Saline Water	METHSIFKYTTERHGIHFIPHDKIEQFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTPL
Ga0307982_10815981	3300031224	Saline Water	MEIHSIFKYTSERNGIHYIPHGKIEAFKKDPLFKIDEINEKLNADEYGLSPIYIINPKKI
Ga0307982_11137281	3300031224	Saline Water	METQSIFKYTTERNGIHFIPHDKIEQFKKDPLFKNDEINEKLKADMYGLSPIFI
Ga0307982_11142862	3300031224	Saline Water	METQSTERNGIHFITHDKIEQFKKDPLFKNDELFEELKAKLYALSPISIINPKKNQNLLRSFTEEN
Ga0307982_11547322	3300031224	Saline Water	METHSIFKYTTERNGIHFIPHDKIEAFKKDPLFKNDEINEKLKADAYGLSPIFIINPKK
Ga0307970_10739612	3300031243	Saline Water	METQSIFKYTTERNGIHFIPHDRIEQFKKGPLFKNDEINEKLKADMYALSPI
Ga0307934_10251023	3300031329	Saline Water	METQSIFKYTIQRNGIHFIPHDKIEEFKKDPLFKNDEINEKLKADSYGLSPILIINPKKI
Ga0307934_10892651	3300031329	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADAYGLSPIFIINPNK
Ga0307936_10808131	3300031333	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADAYGLSPIFIINPNKIKFYDSK
Ga0307936_11021891	3300031333	Saline Water	MDVHSIFKYTIERNGIHFIPHDRIEQFKKDPLFKNDEINEKLKADMYELSPIF
Ga0307936_11104521	3300031333	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIF
Ga0307932_10909682	3300031339	Saline Water	METKSIFKYTTQRNGIHFIPHEKIEPFMKDPLFKNDEINEKLKADTYGLSPIFIINPKKINKYTNYKNIKSLGKSIL
Ga0307952_11054021	3300031343	Saline Water	MEVHSIFKYTIERNGIHFIPHDKIEQFKKDPLYKDDEINEKLKADAYGLSPIFIINPNKIKFY
Ga0307971_10981423	3300031382	Saline Water	METHSIFKYTTERNGIHFIPHDKIEQFKKDPLYKDDEINEKLKADVYGMSPIFIINP
Ga0307947_10396071	3300031387	Saline Water	METKSIFKYTTQRNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFIINPKKIKMYNDLLY
Ga0307954_10159604	3300031391	Saline Water	METKSIFKYTTQRNGIHFIPHEKIEQFKKDPLFKNDEINEKLKADTYGLSPIFIINP
Ga0307954_11350312	3300031391	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADM
Ga0307975_11326703	3300031392	Saline Water	METQSIFKYTTQRNGIHFIPHDKIQAFKKDPLFKNDEIFEKLKADAYGLSPIFIINPK
Ga0307963_11185021	3300031394	Saline Water	METQSIFKYTTERNGIHFIPHVKIEEFKKDPLFKNDKIFEKLKADMYGLSP
Ga0307963_11213071	3300031394	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFIINPNK
Ga0307960_11263342	3300031397	Saline Water	METHSIFKYTTERNGIHYIHHDKIEAFKKDPLFKNDEINEKLKADMYGLSPIFIINP
Ga0307979_10609081	3300031398	Saline Water	METQSIFKYTTERNGIHFIPHDKIEKFKKDPLFKNNELFEKLKADMYGL
Ga0307979_10702591	3300031398	Saline Water	MDVHSIFKYTIERNGIHIIPHDRIEAFKKDPLFKNDEINEKLKADVYGMSPIFIINPKKIKTYYTSVLRKQIK
Ga0307945_10751672	3300031404	Saline Water	MDVHSIFKYTIERNGIHIIPHDRIEAFKKDPLFKNDEINEKLKADAYGLSPIFIINPKKIKTYYTSVLRIRKQIK
Ga0307930_11644911	3300031600	Saline Water	METKSIFKYTTQRNGIHFIPHEKIEQFKKDPLFKNDEINEKLKADTYGLSPIFIINPKKINKYTL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F093000

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences