NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F092934

Metagenome / Metatranscriptome Family F092934

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092934
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 43 residues
Representative Sequence AAAAGVGIARYYVLVTWATVVSLRNYLRRGVPATWDAAEGTR
Number of Associated Samples 99
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.13 %
% of genes from short scaffolds (< 2000 bps) 91.59 %
Associated GOLD sequencing projects 97
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (94.393 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil
(8.411 % of family members)
Environment Ontology (ENVO) Unclassified
(29.907 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(43.925 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 44.29%    β-sheet: 0.00%    Coil/Unstructured: 55.71%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF02397Bac_transf 65.42
PF00535Glycos_transf_2 6.54
PF13489Methyltransf_23 3.74
PF09957VapB_antitoxin 1.87
PF01850PIN 1.87
PF08241Methyltransf_11 0.93
PF16363GDP_Man_Dehyd 0.93
PF076957TMR-DISM_7TM 0.93
PF00011HSP20 0.93
PF13231PMT_2 0.93
PF02698DUF218 0.93
PF08242Methyltransf_12 0.93
PF01370Epimerase 0.93
PF00732GMC_oxred_N 0.93
PF01041DegT_DnrJ_EryC1 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG2148Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)Cell wall/membrane/envelope biogenesis [M] 65.42
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.93
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.93
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.93
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.93
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.93
COG0642Signal transduction histidine kinaseSignal transduction mechanisms [T] 0.93
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 0.93
COG1434Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 familyCell wall/membrane/envelope biogenesis [M] 0.93
COG2303Choline dehydrogenase or related flavoproteinLipid transport and metabolism [I] 0.93
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.93
COG2949Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycinCell wall/membrane/envelope biogenesis [M] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms94.39 %
UnclassifiedrootN/A5.61 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001380|JGI1356J14229_10132104All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria830Open in IMG/M
3300001535|A3PFW1_10116105All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1076Open in IMG/M
3300003992|Ga0055470_10114663All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales679Open in IMG/M
3300003999|Ga0055469_10187625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli641Open in IMG/M
3300004156|Ga0062589_101527077All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia658Open in IMG/M
3300005093|Ga0062594_100976055All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales811Open in IMG/M
3300005168|Ga0066809_10165059All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter → Solirubrobacter soli582Open in IMG/M
3300005175|Ga0066673_10382252All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300005187|Ga0066675_10980989All Organisms → cellular organisms → Bacteria636Open in IMG/M
3300005327|Ga0070658_10729497All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria860Open in IMG/M
3300005455|Ga0070663_100346216All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1202Open in IMG/M
3300005457|Ga0070662_100932996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales741Open in IMG/M
3300005529|Ga0070741_10297234All Organisms → cellular organisms → Bacteria1517Open in IMG/M
3300005557|Ga0066704_10702269All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales637Open in IMG/M
3300005557|Ga0066704_10886090All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium552Open in IMG/M
3300005560|Ga0066670_10876750All Organisms → cellular organisms → Bacteria545Open in IMG/M
3300005564|Ga0070664_100287192All Organisms → cellular organisms → Bacteria1484Open in IMG/M
3300005578|Ga0068854_100144382All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1829Open in IMG/M
3300005598|Ga0066706_10676232All Organisms → cellular organisms → Bacteria → Terrabacteria group820Open in IMG/M
3300005719|Ga0068861_101784858All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales610Open in IMG/M
3300005764|Ga0066903_102591551All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales983Open in IMG/M
3300005764|Ga0066903_102858213All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales937Open in IMG/M
3300005840|Ga0068870_10493340All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales815Open in IMG/M
3300006237|Ga0097621_100353593All Organisms → cellular organisms → Bacteria1307Open in IMG/M
3300006804|Ga0079221_10681516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales712Open in IMG/M
3300006853|Ga0075420_100707560Not Available868Open in IMG/M
3300009137|Ga0066709_100852516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1324Open in IMG/M
3300009840|Ga0126313_10902936All Organisms → cellular organisms → Bacteria → Terrabacteria group721Open in IMG/M
3300010037|Ga0126304_10904319All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia600Open in IMG/M
3300010042|Ga0126314_10565196All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → Thermoleophilum → Thermoleophilum album828Open in IMG/M
3300010325|Ga0134064_10217921All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria692Open in IMG/M
3300010362|Ga0126377_11756042All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium696Open in IMG/M
3300010375|Ga0105239_11527020All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium772Open in IMG/M
3300010880|Ga0126350_10678151All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia514Open in IMG/M
3300012008|Ga0120174_1056336All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium1069Open in IMG/M
3300012046|Ga0136634_10436420All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia551Open in IMG/M
3300012189|Ga0137388_11237193All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium685Open in IMG/M
3300012897|Ga0157285_10284625All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium556Open in IMG/M
3300012958|Ga0164299_11485687All Organisms → cellular organisms → Bacteria → Terrabacteria group528Open in IMG/M
3300012964|Ga0153916_13197718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria515Open in IMG/M
3300013102|Ga0157371_10595672All Organisms → cellular organisms → Bacteria → Terrabacteria group822Open in IMG/M
3300013307|Ga0157372_12479813All Organisms → cellular organisms → Bacteria595Open in IMG/M
3300014497|Ga0182008_10695199Not Available580Open in IMG/M
3300014745|Ga0157377_11595692All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium522Open in IMG/M
3300014968|Ga0157379_11166747All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium740Open in IMG/M
3300015077|Ga0173483_10001360All Organisms → cellular organisms → Bacteria7698Open in IMG/M
3300015161|Ga0167623_1034574All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia1123Open in IMG/M
3300015261|Ga0182006_1210664All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia642Open in IMG/M
3300015373|Ga0132257_100029369All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria5933Open in IMG/M
3300017787|Ga0183260_10021149All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria4954Open in IMG/M
3300017966|Ga0187776_11108035All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia588Open in IMG/M
3300017974|Ga0187777_10879490All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia643Open in IMG/M
3300018060|Ga0187765_10913419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria595Open in IMG/M
3300018064|Ga0187773_11079283All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium532Open in IMG/M
3300018468|Ga0066662_12838192All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium514Open in IMG/M
3300018469|Ga0190270_11065957All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium839Open in IMG/M
3300019361|Ga0173482_10504508All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia588Open in IMG/M
3300022904|Ga0247769_1118897All Organisms → cellular organisms → Bacteria → Terrabacteria group667Open in IMG/M
3300023078|Ga0247756_1112039All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium536Open in IMG/M
3300024232|Ga0247664_1110442All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia639Open in IMG/M
3300025324|Ga0209640_10343495All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1240Open in IMG/M
3300025326|Ga0209342_10596190All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium902Open in IMG/M
3300025796|Ga0210113_1022153All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1305Open in IMG/M
3300025906|Ga0207699_10572588All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium821Open in IMG/M
3300025908|Ga0207643_10926768All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium564Open in IMG/M
3300025912|Ga0207707_11029467Not Available674Open in IMG/M
3300025919|Ga0207657_11028881All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia631Open in IMG/M
3300025922|Ga0207646_11151319All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium681Open in IMG/M
3300025922|Ga0207646_11402361All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia608Open in IMG/M
3300025929|Ga0207664_10526347All Organisms → cellular organisms → Bacteria1060Open in IMG/M
3300025929|Ga0207664_11154515All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia691Open in IMG/M
3300025929|Ga0207664_11949514All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium510Open in IMG/M
3300025932|Ga0207690_10520375All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria964Open in IMG/M
3300025951|Ga0210066_1057491All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia663Open in IMG/M
3300025981|Ga0207640_10936088All Organisms → cellular organisms → Bacteria → Terrabacteria group759Open in IMG/M
3300026041|Ga0207639_11314769All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium678Open in IMG/M
3300026530|Ga0209807_1044332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2081Open in IMG/M
3300027773|Ga0209810_1118314All Organisms → cellular organisms → Bacteria1156Open in IMG/M
3300027857|Ga0209166_10559884All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia583Open in IMG/M
3300027866|Ga0209813_10284520All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium638Open in IMG/M
3300028104|Ga0247713_1030033All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia1365Open in IMG/M
3300028592|Ga0247822_10790707All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium772Open in IMG/M
3300028597|Ga0247820_10617274All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium749Open in IMG/M
3300028716|Ga0307311_10113867All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria762Open in IMG/M
3300028812|Ga0247825_10017513All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Solirubrobacteraceae → Solirubrobacter4684Open in IMG/M
3300028812|Ga0247825_10218591All Organisms → cellular organisms → Bacteria → Terrabacteria group1320Open in IMG/M
3300028865|Ga0302291_10245056All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia613Open in IMG/M
3300030006|Ga0299907_10550555All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria904Open in IMG/M
3300031234|Ga0302325_10325545Not Available2467Open in IMG/M
3300031236|Ga0302324_102562215All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia621Open in IMG/M
3300031239|Ga0265328_10095507All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1099Open in IMG/M
(restricted) 3300031248|Ga0255312_1121531All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia643Open in IMG/M
3300031249|Ga0265339_10518749All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia549Open in IMG/M
3300031938|Ga0308175_101841529All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium678Open in IMG/M
3300031939|Ga0308174_11075713All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia684Open in IMG/M
3300031996|Ga0308176_12802306Not Available518Open in IMG/M
3300032075|Ga0310890_11681610All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium526Open in IMG/M
3300032770|Ga0335085_10272353All Organisms → cellular organisms → Bacteria2023Open in IMG/M
3300032829|Ga0335070_10668220All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium973Open in IMG/M
3300032829|Ga0335070_11198709All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia697Open in IMG/M
3300032892|Ga0335081_12109379All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium597Open in IMG/M
3300032892|Ga0335081_12557700All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium525Open in IMG/M
3300032893|Ga0335069_12767260All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium503Open in IMG/M
3300033158|Ga0335077_10630952All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1114Open in IMG/M
3300033550|Ga0247829_10027875All Organisms → cellular organisms → Bacteria3718Open in IMG/M
3300033807|Ga0314866_048341All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia693Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil8.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.48%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil6.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.61%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere5.61%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands3.74%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.74%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil2.80%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil2.80%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.80%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil2.80%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere2.80%
Polar Desert SandEnvironmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.87%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost1.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.87%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Loam → Unclassified → Soil1.87%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.87%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter1.87%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere1.87%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.87%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.87%
RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere1.87%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.93%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil0.93%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.93%
Glacier Forefield SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil0.93%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.93%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.93%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.93%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Populus EndosphereHost-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.93%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Boreal Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil0.93%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001380Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 mEnvironmentalOpen in IMG/M
3300001535Permafrost active layer microbial communities from McGill Arctic Research Station, Canada - (A3-PF-15A)- 1 week illuminaEnvironmentalOpen in IMG/M
3300003992Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D1EnvironmentalOpen in IMG/M
3300003999Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005168Soil and rhizosphere microbial communities from Laval, Canada - mgLPCEnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005327Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaGHost-AssociatedOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005529Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1EnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005560Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119EnvironmentalOpen in IMG/M
3300005564Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaGHost-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005598Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155EnvironmentalOpen in IMG/M
3300005719Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2Host-AssociatedOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300005840Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006804Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200EnvironmentalOpen in IMG/M
3300006853Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300009840Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105AEnvironmentalOpen in IMG/M
3300010037Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25EnvironmentalOpen in IMG/M
3300010042Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105BEnvironmentalOpen in IMG/M
3300010325Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaGEnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010880Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300012008Permafrost microbial communities from Nunavut, Canada - A39_80cm_12MEnvironmentalOpen in IMG/M
3300012046Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ833 (21.06)EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012958Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MGEnvironmentalOpen in IMG/M
3300012964Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaGEnvironmentalOpen in IMG/M
3300013102Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014497Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015161Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G1B, Ice margin)EnvironmentalOpen in IMG/M
3300015261Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017787Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)EnvironmentalOpen in IMG/M
3300017966Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MGEnvironmentalOpen in IMG/M
3300017974Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MGEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018064Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300022904Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L166-409R-6EnvironmentalOpen in IMG/M
3300023078Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L066-202C-4EnvironmentalOpen in IMG/M
3300024232Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK05EnvironmentalOpen in IMG/M
3300025324Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 10_1 (SPAdes)EnvironmentalOpen in IMG/M
3300025326Soil microbial communities from Rifle, Colorado - Rifle CSP2_sed 16_2 (SPAdes)EnvironmentalOpen in IMG/M
3300025796Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025908Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025912Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025951Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushMan_ThreeSqA_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025981Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026530Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)EnvironmentalOpen in IMG/M
3300027773Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027857Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027866Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)Host-AssociatedOpen in IMG/M
3300028104Soil microbial communities from hillslope of Landscape Evolution Observatory, University of Arizona, Oracle, AZ, United States - 2-1-E_NEnvironmentalOpen in IMG/M
3300028592Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30EnvironmentalOpen in IMG/M
3300028597Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028812Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48EnvironmentalOpen in IMG/M
3300028865Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N1_4EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300031234Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2EnvironmentalOpen in IMG/M
3300031236Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_1EnvironmentalOpen in IMG/M
3300031239Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaGHost-AssociatedOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031249Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaGHost-AssociatedOpen in IMG/M
3300031938Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1EnvironmentalOpen in IMG/M
3300031939Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2EnvironmentalOpen in IMG/M
3300031996Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033158Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1EnvironmentalOpen in IMG/M
3300033550Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4EnvironmentalOpen in IMG/M
3300033807Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_10EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI1356J14229_1013210433300001380GroundwaterAAGVGIARYYVLVTWATVVSLRNYLRRGVPATWDAAEGAQ*
A3PFW1_1011610533300001535PermafrostFGVGLPRYYVLVTWATVVALWNYLRRGVPTTWDVAEGTR*
Ga0055470_1011466313300003992Natural And Restored WetlandsAAAFGVGLPRYYVLVTWATNVALWNYLRRGVPATWTPAEGTR*
Ga0055469_1018762523300003999Natural And Restored WetlandsLGLAAAFAARVPIARYYVYVTWATVQALWNYLHRGVPATWDAAEGTR*
Ga0062589_10152707723300004156SoilVGIARYYGLVTLATLVSLWNYLRRGVPATWATGEEARGAAA*
Ga0062594_10097605523300005093SoilALLGAAAARVGIARYYVLVTWATVASLANYLRRGVPAAWDPGATR*
Ga0066809_1016505913300005168SoilAAFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR*
Ga0066673_1038225223300005175SoilAGVGIARYYVLVTWATVVSLWNYLRRGVPTTWTPPEGTR*
Ga0066675_1098098913300005187SoilAAQLLVLLAAALGVGIARYYVLVTWATVVALWNYIKRGVPATWEAAAGTR*
Ga0070658_1072949733300005327Corn RhizosphereVLTAFAAGVPIARYYVYVTWATVQALWNYLRLGVPATWDAAEGTR*
Ga0070663_10034621613300005455Corn RhizosphereALLAQLGLFAAFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR*
Ga0070662_10093299613300005457Corn RhizosphereLAAFAAGVPIARYYVYVTWATVQAFRNYLRRGVPATWDAAEGTR*
Ga0070741_1029723433300005529Surface SoilGIARYYVLVTWATVQSLVNYLRRGVPTTWDAAEGTR*
Ga0066704_1070226923300005557SoilIARYYVLVTWATIVSLANVLRRGVPATWQAAEGTR*
Ga0066704_1088609013300005557SoilLPRYYVLVTWATVVSLFNYVRRGVPATWEAAEGTR*
Ga0066670_1087675013300005560SoilAAALGVGIARYYVLVTWATVVALWNYIKRGVPATWEAAAGTR*
Ga0070664_10028719243300005564Corn RhizosphereFAAGVPIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR*
Ga0068854_10014438213300005578Corn RhizosphereYALVLLGQLAVLTAFAAGVPIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR*
Ga0066706_1067623223300005598SoilLHYYLLVTWATFVSLVRYLRRGVPATWDAAAGTRTLG*
Ga0068861_10178485813300005719Switchgrass RhizosphereFVAGVPIARYYVFVTWATVQALWNYLRRGVPAAWDPAATR*
Ga0066903_10259155133300005764Tropical Forest SoilGVGVARYYVLVTCATLESLFNYARRGVPTTWESAEGTR*
Ga0066903_10285821333300005764Tropical Forest SoilGIARYYVLVTWATVVALANYLRRGVPATWEAPEGTR*
Ga0068870_1049334023300005840Miscanthus RhizosphereAAQVALGAAFVAGVPIARYYVFVTWATVQALWNYLRRGVPAAWDPAATR*
Ga0097621_10035359333300006237Miscanthus RhizosphereLLLAALFGVGIARYYVLVTWATVVALWNYARRGVPATWEIAEGTR*
Ga0079221_1068151613300006804Agricultural SoilLILVAAAAGVGIARYYVLVTWATLVSLVNYLRRGVPATWEVAEGTR*
Ga0075420_10070756013300006853Populus RhizosphereHYYTLVSWATVVALARYLQQGGVSPTWEKAEGTR*
Ga0105245_1058055933300009098Miscanthus RhizosphereGAAAVAGVGIARYYVLVTWATLVSLWNYLRRGVPAGWEPARE*
Ga0066709_10085251613300009137Grasslands SoilQLGLLLAALVGVGVARYYVLVTWATVVALWNYGRRGVPATWEVAEGTR*
Ga0126313_1090293623300009840Serpentine SoilLLLLAAALGVGVARYYVLVTWATVLALRNYLRRGVPATWEVAEGTR*
Ga0126304_1090431923300010037Serpentine SoilLAYYYALVTWATVVSLWNYARRGVPATWAPPEGTR*
Ga0126314_1056519623300010042Serpentine SoilAARGAQLLLLLAAALGVGIARYYVLVTWATVLALRNYLRRGVPATWEVAEGTR*
Ga0134064_1021792123300010325Grasslands SoilGVGIARYYVLVTWATVVSLVNYVRRGVPATWEAAEGTR*
Ga0126377_1175604213300010362Tropical Forest SoilVPIARYYVYVTWATAQALWNYLRRGVPATWDAAEGTR*
Ga0105239_1152702013300010375Corn RhizosphereAFVAGVPIARYYVFVTWATVQALWNYLRRGVPAAWDPAATR*
Ga0126350_1067815113300010880Boreal Forest SoilVLAAALVGVGLPRYYVLVTWATVQALFNYLRHGVPVTWDPAEGTR*
Ga0120174_105633623300012008PermafrostLLLAAAVGVGIARYYVLVTWATLVALLNYLRRGVPATWQPAHE*
Ga0136634_1043642013300012046Polar Desert SandQLALAAQLALLAAAAAGVGIVRYYVLVTWATVVSLWNYLRRGVPAAWEPGSTR*
Ga0137388_1123719323300012189Vadose Zone SoilALGVQLGVLLAALFGVGLPRYYVLVTWATVVALWNYLRRGVPTTCDAAEGTR*
Ga0157285_1028462513300012897SoilAGQLAVLAAFAARVPLARYYVYVAWATVQALWNYLRRGVPATWDAAEGTR*
Ga0164299_1148568713300012958SoilPIARYYVYVTWATVQALWNYLRHGVPAAWDPAITR*
Ga0153916_1319771823300012964Freshwater WetlandsALFGVGLPRYYVLVTWATVVALWNYLRRGVPTTWDVADGTR*
Ga0157371_1059567233300013102Corn RhizospherePIARYYVYVTWATVQALRNYLRRGVPAAWDAAEGTR*
Ga0157372_1247981313300013307Corn RhizosphereVLLAALFGVGIPRYYVLVTWATVVALWNYARRGVATTWDVAEGTR*
Ga0182008_1069519923300014497RhizosphereVGFPRYYVLVTWATVVALWNYARRGVPTTWETAEGTR*
Ga0157377_1159569223300014745Miscanthus RhizosphereFAAGVPIARYYVYVTWATVQALRNYLRRGVPAIWDAAEGTR*
Ga0157379_1116674723300014968Switchgrass RhizosphereAAFGAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR*
Ga0173483_1000136013300015077SoilVALAAAFAARVPIARYYVYVTWATVQALWNYVRRGVPATWEAAEGTR*
Ga0167623_103457433300015161Glacier Forefield SoilLAAFAARVPIARYYVYVTWATAQALWNYLRRGVPAAWDPAATR*
Ga0182006_121066413300015261RhizosphereGIARNYELVTLATIVSLWNYVRRGVPATWEAAEGTR*
Ga0132257_10002936913300015373Arabidopsis RhizosphereAAFAARVPIARYYVYVTWATVQALWNYVRRGVPATWEAAEGTR*
Ga0183260_1002114973300017787Polar Desert SandAGVPIARYYVYVTWATAQALWNYLRRGVPAAWDPAATR
Ga0187776_1110803523300017966Tropical PeatlandAVGVGVARYYVLVTWATLEALVKYLRRGVPTTWEAAEGTR
Ga0187777_1087949023300017974Tropical PeatlandYDLVLAAQLGLLLAAALGVGIARYYVLVTWATLVALLNYVRRGVPATWEAAEGTR
Ga0187765_1091341913300018060Tropical PeatlandVGVGVARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR
Ga0187773_1107928323300018064Tropical PeatlandLAAALLGVGIARYYVLVTWATVQSLFNYLHRGVPPTWDAAEGTR
Ga0066662_1283819213300018468Grasslands SoilALAGVGIARYYVLVTWATIVSLVNYLRRGVPTTWDVAEGTR
Ga0190270_1106595733300018469SoilPIARYYTYVTWATVQALWNYLRHGVAAAWDPAATR
Ga0173482_1050450813300019361SoilIAAAAAGVALPRYYVLITWATNVALWNYLRRGVPATWDAAEGTR
Ga0247769_111889713300022904Plant LitterPIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR
Ga0247756_111203923300023078Plant LitterAAAGVGIARYYVLVTWATLVSLRNYLQRGVPATWDVAEGTR
Ga0247664_111044213300024232SoilVALPRYYVLITWATNVALWNYLRRGVPATWQIAEGTR
Ga0209640_1034349533300025324SoilGALLAAAAVGVGIARYYVLVTWATVVSLANYLRRGVPATWEAPAR
Ga0209342_1059619013300025326SoilAAAAGVGIARYYVLVTWATVVSLRNYLRRGVPATWDAAEGTR
Ga0210113_102215343300025796Natural And Restored WetlandsALLAAFAADVPIARYYVYVTWATVQALWNYLRRGVPAAWDPAATR
Ga0207699_1057258813300025906Corn, Switchgrass And Miscanthus RhizosphereGLLLVAAGLGVGIARYYVLVTWATVVALWNYLRRGVPATWAAPEGTR
Ga0207643_1092676813300025908Miscanthus RhizosphereVVLAAFAAGVPIARYYVYVTWATVQAFRNYLRRGVPATWDAAEGTR
Ga0207707_1102946713300025912Corn RhizosphereLLAAAAAGVGVARYYVLVTWATVVALWNFMRRGVPATWGPPEGTRA
Ga0207657_1102888113300025919Corn RhizosphereAFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR
Ga0207646_1115131923300025922Corn, Switchgrass And Miscanthus RhizosphereGAAALGVGIARYYVLVTWATVVGLANYLKRGVPATWEVAEGTR
Ga0207646_1140236113300025922Corn, Switchgrass And Miscanthus RhizosphereLAAAALGVGIARYYVLVTWATLVSLLNYVRRGVPATWEVAEGTRV
Ga0207664_1052634713300025929Agricultural SoilGLPRYYILITWATVQALFNYLRNGVPATWDAAQGTR
Ga0207664_1115451523300025929Agricultural SoilFVAQGLLLVAAGLGVGIARYYVLVTWATVVALWNYLRRGVPATWAAPEGTR
Ga0207664_1194951413300025929Agricultural SoilLVGVGIARYYVLISWATVVALVNYVRRGVPTTWEAAEGTR
Ga0207690_1052037533300025932Corn RhizosphereAALFGVGLPRYYVLVTWATNVALWNYLRRGVPTTWEAAEGTR
Ga0210066_105749123300025951Natural And Restored WetlandsFLGAAAAGVPLARYYTLVTWATLQALVNYLRRGVPATWEAAEGTR
Ga0207640_1093608823300025981Corn RhizosphereVLTAFAAGVPIARYYVYVTWATVQALRNYLRRGVPATWDAAEGTR
Ga0207639_1131476913300026041Corn RhizosphereFAAFAAGVPIARYYVYVTWATVQALWNYLRHGVPAAWDPAVTR
Ga0209807_104433243300026530SoilQLGVLAAALLGVGIARYYVLVTWATVQSLFNYLRRGVPATWDAAEGTR
Ga0209810_111831423300027773Surface SoilIARYYVLVTWATVVSLVNYLRRGVPATWEAAEGTR
Ga0209166_1055988423300027857Surface SoilVILGLQLGVLAAALVGVGLPRYYVLVTWATVQSLVNYLRRGVPSTWDAAEGTR
Ga0209813_1028452023300027866Populus EndosphereAGQLAVLAAFAARVPVARYYVYVAWATVQALWNYLRRGVPATWDAAEGTR
Ga0247713_103003333300028104SoilLLAAAAARPGLPRYYVLVTWATVQALANYLRRGVPATWQAAEGTR
Ga0247822_1079070723300028592SoilLGQLAVLAAFAAGIPIARYYTYVTWATVQALRNYLRHGVAAAWDPAATR
Ga0247820_1061727413300028597SoilQLAVLAAFAAGIPIARYYTYVTWATVQALRNYLRHGVAAAWDPAATR
Ga0307311_1011386723300028716SoilGLLLAALVGVGIARYYVLVTWATVVALWNYVRRGVPTTWDVAEGTR
Ga0247825_1001751313300028812SoilAAGIPIARYYTYVTWATVQALRNYLRHGVAAAWDPAATR
Ga0247825_1021859113300028812SoilLGVGIARYYVLITWATVVALANYLRRGVPATWQVAEGTR
Ga0302291_1024505613300028865FenLAFVARVSIARYYVYITWATVQALVNYLRRGVPATWEAAEGTR
Ga0299907_1055055533300030006SoilWLAAAAAGVGIARYTVLVNWATVVALWNYLRRGVPATWKVAEGTR
Ga0302325_1032554543300031234PalsaSIARYYLLITLATGVALVNYLRRGVPATWKVAEGTR
Ga0302324_10256221513300031236PalsaSIARYYVLISWATVVALVNYVRRGVPATWKAAEGLR
Ga0265328_1009550713300031239RhizosphereAAALFGVGIARYYVLVTWATVESLFNYVRHGVPATWEIAEGTR
(restricted) Ga0255312_112153113300031248Sandy SoilQLGVLAAALVGVGLPRYYVLVTWATVQSLFNYIRHGVPATWDAAEGTR
Ga0265339_1051874913300031249RhizosphereAAFGVGVARYYVLVTWATVASLVNYLRRGVSVTWEVAEGTR
Ga0308175_10184152923300031938SoilGAALKGVGIARYYVLVTGATAVALGNYLRRGVPATWQPAEGTR
Ga0308174_1107571313300031939SoilVLGLQLGVLLAAALGVGLPRYYVLVTWATVVALWNYLRRGVPATWELAEGPR
Ga0308176_1280230623300031996SoilVGLPRYYVLITWATVAALWNYARKGVPSTWEAAEGTR
Ga0310890_1168161023300032075SoilALLGQLALAAAFAARVPIARYYVYVTWATVQALWNYARRGVPAAWDPAATR
Ga0335085_1027235323300032770SoilGVGVARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR
Ga0335070_1066822023300032829SoilGVGVARYYVLVTWATLESLFNYARRGVPATWDAAEGTR
Ga0335070_1119870913300032829SoilALGLQLGLLAAAAVGVGVARYYVLVTWATLEALVKYLRRGVPTTWEAAEGTR
Ga0335081_1210937923300032892SoilLAAAAVGVGVPRYYVLVTWATLESLFNYVRRGVPVTWEAAEGTR
Ga0335081_1255770013300032892SoilYPVALGLQLGVLAAAAVGVGVPRYYVLVTWATLESLFNYVRRGVPTTWEAAEGTR
Ga0335069_1276726013300032893SoilALGLQLGLLAAAAVGVGVARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR
Ga0335077_1063095223300033158SoilVARYYVLVTWATLESLVNYVRRGVPATWDAAEGTR
Ga0247829_1002787563300033550SoilALLGQLAVLAAFAAGIPIARYYTYVTWATVQALWNYLRHGVAAAWDPAATR
Ga0314866_048341_2_1573300033807PeatlandLGLQLGVLAAAAVGVGLPRYYVLVTWATLESLFNYVRRGVPATWEAAEGTR

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.