Metagenome / Metatranscriptome Family F092907

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092907
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	99 residues
Representative Sequence	MAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Number of Associated Samples	70
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.00 %
% of genes near scaffold ends (potentially truncated)	30.84 %
% of genes from short scaffolds (< 2000 bps)	77.57 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (86.916 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.579 % of family members)
Environment Ontology (ENVO)	Unclassified (46.729 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.879 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 18.81% β-sheet: 29.70% Coil/Unstructured: 51.49%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00924	MS_channel	37.38
PF16078	2-oxogl_dehyd_N	35.51
PF03551	PadR	2.80
PF00676	E1_dh	1.87
PF01048	PNP_UDP_1	1.87
PF00585	Thr_dehydrat_C	0.93
PF07992	Pyr_redox_2	0.93
PF06974	WS_DGAT_C	0.93
PF01850	PIN	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	37.38
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	37.38
COG1695	DNA-binding transcriptional regulator, PadR family	Transcription [K]	2.80
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	2.80
COG1846	DNA-binding transcriptional regulator, MarR family	Transcription [K]	2.80
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	1.87
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	1.87
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	1.87
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	1.87
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	1.87
COG1171	Threonine deaminase	Amino acid transport and metabolism [E]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.17 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	24.30 %
Unclassified	root	N/A	13.08 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	24.30 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	21.50 %
Unclassified	root	N/A	13.08 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	24.30 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	21.50 %
Unclassified	root	N/A	13.08 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	24.30 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	18.69 %
Unclassified	root	N/A	13.08 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	24.30 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	18.69 %
Unclassified	root	N/A	13.08 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10097361	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300001431\|F14TB_100074774	All Organisms → cellular organisms → Bacteria	1149	Open in IMG/M
3300005332\|Ga0066388_100219932	All Organisms → cellular organisms → Bacteria	2528	Open in IMG/M
3300005332\|Ga0066388_100322752	All Organisms → cellular organisms → Bacteria	2190	Open in IMG/M
3300005332\|Ga0066388_100392735	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2033	Open in IMG/M
3300005332\|Ga0066388_100393722	All Organisms → cellular organisms → Bacteria	2031	Open in IMG/M
3300005332\|Ga0066388_100719456	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	1602	Open in IMG/M
3300005332\|Ga0066388_100899806	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300005332\|Ga0066388_102398692	All Organisms → cellular organisms → Bacteria	957	Open in IMG/M
3300005332\|Ga0066388_104453705	Not Available	713	Open in IMG/M
3300005332\|Ga0066388_106692624	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	581	Open in IMG/M
3300005332\|Ga0066388_107144654	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300005363\|Ga0008090_15897530	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	663	Open in IMG/M
3300005713\|Ga0066905_100004808	All Organisms → cellular organisms → Bacteria	5611	Open in IMG/M
3300005713\|Ga0066905_100143342	All Organisms → cellular organisms → Bacteria	1709	Open in IMG/M
3300005713\|Ga0066905_100272471	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300005713\|Ga0066905_100541130	All Organisms → cellular organisms → Bacteria	976	Open in IMG/M
3300005713\|Ga0066905_100810362	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	813	Open in IMG/M
3300005713\|Ga0066905_101057960	Not Available	718	Open in IMG/M
3300005764\|Ga0066903_100183834	All Organisms → cellular organisms → Bacteria	3089	Open in IMG/M
3300005764\|Ga0066903_100280437	All Organisms → cellular organisms → Bacteria	2612	Open in IMG/M
3300005764\|Ga0066903_102456828	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300005764\|Ga0066903_104146282	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	776	Open in IMG/M
3300005764\|Ga0066903_104301072	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	761	Open in IMG/M
3300005764\|Ga0066903_104945517	All Organisms → cellular organisms → Bacteria	707	Open in IMG/M
3300005764\|Ga0066903_107440361	Not Available	565	Open in IMG/M
3300009792\|Ga0126374_10151310	All Organisms → cellular organisms → Bacteria	1406	Open in IMG/M
3300010043\|Ga0126380_10016064	All Organisms → cellular organisms → Bacteria	3490	Open in IMG/M
3300010043\|Ga0126380_10134883	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1552	Open in IMG/M
3300010046\|Ga0126384_10679476	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300010048\|Ga0126373_11509372	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	737	Open in IMG/M
3300010154\|Ga0127503_10993979	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300010358\|Ga0126370_10093869	All Organisms → cellular organisms → Bacteria	2055	Open in IMG/M
3300010358\|Ga0126370_12133125	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	551	Open in IMG/M
3300010359\|Ga0126376_10177725	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1738	Open in IMG/M
3300010359\|Ga0126376_10269383	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1461	Open in IMG/M
3300010359\|Ga0126376_12697154	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300010361\|Ga0126378_10342893	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1603	Open in IMG/M
3300010362\|Ga0126377_10427964	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1341	Open in IMG/M
3300010366\|Ga0126379_11174546	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	874	Open in IMG/M
3300010376\|Ga0126381_100349062	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2045	Open in IMG/M
3300010376\|Ga0126381_101525324	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	966	Open in IMG/M
3300010376\|Ga0126381_101929336	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300010376\|Ga0126381_103732363	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300010398\|Ga0126383_11273724	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300010868\|Ga0124844_1157266	Not Available	856	Open in IMG/M
3300012971\|Ga0126369_12902374	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	561	Open in IMG/M
3300015371\|Ga0132258_10047258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9824	Open in IMG/M
3300015371\|Ga0132258_12350367	All Organisms → cellular organisms → Bacteria	1336	Open in IMG/M
3300015372\|Ga0132256_103305910	Not Available	542	Open in IMG/M
3300016270\|Ga0182036_10756847	All Organisms → cellular organisms → Bacteria → Proteobacteria	789	Open in IMG/M
3300016294\|Ga0182041_11263446	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	675	Open in IMG/M
3300016357\|Ga0182032_10227315	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300016422\|Ga0182039_10635198	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	936	Open in IMG/M
3300021405\|Ga0210387_10329448	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300031231\|Ga0170824_125098237	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	740	Open in IMG/M
3300031474\|Ga0170818_105713340	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	558	Open in IMG/M
3300031544\|Ga0318534_10028134	All Organisms → cellular organisms → Bacteria	3047	Open in IMG/M
3300031549\|Ga0318571_10251436	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	650	Open in IMG/M
3300031564\|Ga0318573_10025582	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2710	Open in IMG/M
3300031572\|Ga0318515_10464007	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	677	Open in IMG/M
3300031573\|Ga0310915_10354912	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1040	Open in IMG/M
3300031640\|Ga0318555_10470545	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	681	Open in IMG/M
3300031681\|Ga0318572_10645750	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	630	Open in IMG/M
3300031723\|Ga0318493_10312909	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	849	Open in IMG/M
3300031744\|Ga0306918_10243760	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1370	Open in IMG/M
3300031747\|Ga0318502_10606433	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	659	Open in IMG/M
3300031765\|Ga0318554_10048000	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2331	Open in IMG/M
3300031765\|Ga0318554_10857205	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300031770\|Ga0318521_10245402	All Organisms → cellular organisms → Bacteria → Proteobacteria	1044	Open in IMG/M
3300031771\|Ga0318546_10626858	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300031771\|Ga0318546_11274092	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	516	Open in IMG/M
3300031778\|Ga0318498_10023994	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	2604	Open in IMG/M
3300031779\|Ga0318566_10017341	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3136	Open in IMG/M
3300031779\|Ga0318566_10448173	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	634	Open in IMG/M
3300031779\|Ga0318566_10577517	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	548	Open in IMG/M
3300031792\|Ga0318529_10474254	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	582	Open in IMG/M
3300031794\|Ga0318503_10170963	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300031799\|Ga0318565_10389210	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	676	Open in IMG/M
3300031819\|Ga0318568_10482248	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	773	Open in IMG/M
3300031845\|Ga0318511_10519768	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	552	Open in IMG/M
3300031860\|Ga0318495_10009767	All Organisms → cellular organisms → Bacteria	3929	Open in IMG/M
3300031879\|Ga0306919_11194995	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	578	Open in IMG/M
3300031893\|Ga0318536_10646420	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300031912\|Ga0306921_10466255	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	1471	Open in IMG/M
3300031942\|Ga0310916_10219148	Not Available	1597	Open in IMG/M
3300031945\|Ga0310913_11194304	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300032001\|Ga0306922_10329799	All Organisms → cellular organisms → Bacteria → Proteobacteria	1638	Open in IMG/M
3300032025\|Ga0318507_10335060	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	659	Open in IMG/M
3300032035\|Ga0310911_10281212	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300032041\|Ga0318549_10543772	Not Available	522	Open in IMG/M
3300032044\|Ga0318558_10293323	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	804	Open in IMG/M
3300032063\|Ga0318504_10231271	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	868	Open in IMG/M
3300032065\|Ga0318513_10432751	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	643	Open in IMG/M
3300032076\|Ga0306924_12276739	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300032090\|Ga0318518_10102549	All Organisms → cellular organisms → Bacteria → Proteobacteria	1428	Open in IMG/M
3300032094\|Ga0318540_10463405	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	612	Open in IMG/M
3300032205\|Ga0307472_102111030	All Organisms → cellular organisms → Bacteria	567	Open in IMG/M
3300032261\|Ga0306920_101188828	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1102	Open in IMG/M
3300032261\|Ga0306920_101608446	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.26%
Host-Associated	Host-Associated	3.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.33%
Plants	Host-Associated → Plants	3.74%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.80%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.22%
Loam	Environmental → Terrestrial → Soil → Loam	27.10%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	47.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	24.30%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.58%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	24.30%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	19.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.28%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_100973613	3300000550	Soil	MKDALDWTRITFTDHMVEAAVVVAQGQVAFDFEGREQVTYEVKVFRTLKGASSQPFFAVATNLGDPAAFRPIGEGDTPEAALEACLAAAGIYHRRRVKQSEG*
F14TB_1000747742	3300001431	Soil	MKDPLDWSRITFTDHMVEAAAVVAQCQVAFDFEGREQVAYEVKVFRTLKGASSQPFFAVATNLGDPAAFRPIGEGDTPEAALEACLAAAGIYHRRRVKQSEG*
Ga0066388_1002199322	3300005332	Tropical Forest Soil	MKELLDWDRITFTDHMVEAAAVIAECQVAFDFEGREQVCYEVKVFRPLKGASSESFFALATNRADAAAFRPIGEGDSPEAALEACLAAAGVYHRRRVKQSEG*
Ga0066388_1003227522	3300005332	Tropical Forest Soil	MAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTCYEVKVFRPLKGGSAQPFFAVATNRADPDAFRPTGEGESAEAALQACLHDAGIHHRRRVRQTSG*
Ga0066388_1003927351	3300005332	Tropical Forest Soil	MDAVRWDRVTFSTHMVEAAAVIGECQVAFDFAGQEQVCYQVQVFRALKGASTRPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0066388_1003937221	3300005332	Tropical Forest Soil	MAPIAWERITFTAHMVEAAAVVAECHVAFDFEGHEQTTYEVKVFRALKGAFGQPFFAVGTNRGDPAAFRPTGEGESAEAALEACLQDAGIHHRRRVRQTTG*
Ga0066388_1007194564	3300005332	Tropical Forest Soil	MKDSLDWSRITFTDHMVEAAAVVAQCQVAFDFEGREQVTYEVKVFRTLKGASSEPFFAVAVNLGDSGAFRPIGEGETPEAALEACLAAAGIHHRRLVKQSGD*
Ga0066388_1008998062	3300005332	Tropical Forest Soil	MKDPIDWSRFTFTDHMVEAAAVVAQCQVAFDFEGREQVSYEVKIFRTLKGASSAAFFAVAVNLGDSAAFRPIGEGDTPEAALDACLAAAGIHHRRRVKQSGD*
Ga0066388_1009386301	3300005332	Tropical Forest Soil	FDFEGREQVCYEVKVFRPLKGASPQPFFAVATNRSDPGAFRPVGGGESPEAALEACLAEAGIHHRRRVKHAGG*
Ga0066388_1023986921	3300005332	Tropical Forest Soil	VPPLDWNRITLTAHMIEAAAVVAECQVAFDFEGREQVCYEVKVFRTLKGASARPFFAVATNRSDPGAFRPVAEGDSAEAALEGCLAEAGIHHRRRVRQSDG*
Ga0066388_1044537051	3300005332	Tropical Forest Soil	MDSGTRTSLDWNRITFTDHMVEAAAVVAECQVAFDFEGREQVCYEVKVFRTLKGASSEPFFALATNRADAAAFRPIGEGDSPEAALEACLAAAGVYHRRRVKQSEG*
Ga0066388_1066926241	3300005332	Tropical Forest Soil	MDAVRWDRVTFSTHLVEAAAVVGECQVAFDFDGQEQVCYQVQVFRSLKGASVRPFFAVATNRSDPAAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0066388_1071446542	3300005332	Tropical Forest Soil	MHDGPGMDAVRWDRVTFSTHLVEAAAVVGECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0008090_158975302	3300005363	Tropical Rainforest Soil	MAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGTSAQPFVAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHRRRVQQTGA*
Ga0066905_1000048082	3300005713	Tropical Forest Soil	MHDGPGMDAVRWDRVTFSTHLVEAAAVVGECQVAFDFDGHEQVCYQVQVFRSLKGASARPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0066905_1001433422	3300005713	Tropical Forest Soil	MHDGYWMDVFRWDHITFSTHMVEAAAVVGECQVAFDFDGQEQVCYQVQVFRSLKGASARPFYAVATNRSDPGAFRPVGEGDSAEQALEACLAEAGIYHRRRVKQAGD*
Ga0066905_1002724712	3300005713	Tropical Forest Soil	VDDRNVMAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGTSAQPFVAVATNRTDPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0066905_1005411302	3300005713	Tropical Forest Soil	MAPIAWERITFTAHMVEAAAVVAECHVAFDFEGHEQTTYEVKVFRALKGASGRPFFAVGTNRGDPAAFRPTGEGESAEAALEACLQDAGIHHRRRVRQTTG*
Ga0066905_1008103621	3300005713	Tropical Forest Soil	MVEAAALVAQCQVAFDFEGREQVTYEVKVFRTLKGASPQPFFAVAVNLGEPTGFRPIGEGDTPEAALEACLAAAGIHHRRRVKQSGD*
Ga0066905_1010579601	3300005713	Tropical Forest Soil	MKDPLDWSRITFTDHMVEAAAVVAQCQVAFDFEGSEQVTYEVKVFRTLKGASAEPFFAVAVNLGDSAAFRPIGEGDTPEAALEACLAA
Ga0066903_1001838342	3300005764	Tropical Forest Soil	VHELPAMDAVRWDRVGLSAHMVEVAAVVGECQVAFDFEGREQVCYEVKVFRPLKGASPQPFFAVATNRSDPGAFRPVGEGESPEAALEACLAEAGIHHRRRVKHTGG*
Ga0066903_1002804373	3300005764	Tropical Forest Soil	MKELLDWNRITFTDHMVEAAAVIAECQVAFDFEGREQVCYEVKVFRTIKGASSEPFFALATNRADAAAFRPIGEGDSPEAALEACLAAAGVYHRRRVKQSEG*
Ga0066903_1024568282	3300005764	Tropical Forest Soil	AHMVEAAAVVAECHVAFDFDGHEQTTYEVKVFRALKGASGHPFFAVGTNRGDPAAFRPTGEGESAEAALEACLQDAGIHHRRRVRQTTG*
Ga0066903_1041462822	3300005764	Tropical Forest Soil	MNCWTMDAVHWDHVRFSPHMVEAAAVVGECQVAFDFDGQEQVCYEVKVFRSLKGASARAFFAVATNRSDPGAFRPVGEGDSAEAALDACLAEAGIYHRRRVKQAGG*
Ga0066903_1043010721	3300005764	Tropical Forest Soil	EAAAVVGECQVAFDFDGQEQVCYQVQVFRSLKGASVRPFFAVATNRSDPAAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0066903_1049455172	3300005764	Tropical Forest Soil	AHMVEAAAVVAECHVAFDFDGHEQTTYEVKVFRALKGASGQPFFAVGTNRRDPAAFRPTGEGESAEAALEACLQDAGIHHRRRVRQTTG*
Ga0066903_1074403611	3300005764	Tropical Forest Soil	VDDRNAMAPIAWDRITFTAHMVEAATLVAECHVAFDFEGHEQTAYEVKVFRVLKGSSARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0066903_1076650191	3300005764	Tropical Forest Soil	DFEGREQVCYEVKVFRTLKGASARPFFAVATNRSDPGAFRPVAEGDSAEAALEGCLAEAGIHHRRRVRQSDG*
Ga0126374_101513102	3300009792	Tropical Forest Soil	MAPIAWERITFTAHMVEAAAVVAECHVAFDFEGHEQTTYEVKVFRALKGASGQPFFAVGTNRGDPAAFRPTGEGESAEAALEACLQDAGIHHRRRVRQTTG*
Ga0126380_100160642	3300010043	Tropical Forest Soil	MAPIPWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGTSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0126380_101348832	3300010043	Tropical Forest Soil	MDSGTRTSLDWNRITFTDHMVEAAAVVAECQVAFDFDGQEQVCYQVQVFHSLKGASARPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0126384_103837792	3300010046	Tropical Forest Soil	VGECQVAFDFDGQEQVCYQVQVFRSLKGTSARPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0126384_106794762	3300010046	Tropical Forest Soil	MAPVAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0126373_115093721	3300010048	Tropical Forest Soil	MAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQAAYEVKVFRVLKGTSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0127503_109939792	3300010154	Soil	MAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGPAPQPFVAVATNRADPTAFRPTGEGASAEEALQACLQDAGIHHRRRVQQTGA*
Ga0126370_100938692	3300010358	Tropical Forest Soil	MAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGENAEEALQACLHDAGIHHRRRVQQTGA*
Ga0126370_121331251	3300010358	Tropical Forest Soil	MDVVRWDRITFSTHVVEAAAVVGECQVAFDFDGQEQVCYQVQVFRSLKGASARPFYAVATNRSDPGAFRPVGEGDSAEQALEACLAEAGIYHRRRVKQAGD*
Ga0126376_101777252	3300010359	Tropical Forest Soil	MKELLDWNRITFTDHMVEAAAVIAECQVAFDFEGREQVCYEVKVFRTLKGASSEPFFALATNRADAAAFRPIGEGDSPEAALEACLAAAGVYHRRRVKQSEG*
Ga0126376_102693832	3300010359	Tropical Forest Soil	MAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGTSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0126376_126971541	3300010359	Tropical Forest Soil	MAPIAWERITFTAHMVEAAAVVAECHVAFDFEGHEQTTYEVKVFRALKGASGQPFFAVGTNRGDPAAFRPTGEGESAEAALEACLHDAGIHHRRRVRQTGG*
Ga0126378_103428932	3300010361	Tropical Forest Soil	MDAVRWDRVTFSTHLVEAAAVVGECQVAFDFDGQEQVCYQVQVFRSLKGTSARPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0126377_104279642	3300010362	Tropical Forest Soil	MAPIAWERITFTAHMVEAAAVVAECHVAFDFEGHEQTTYEVKVFRALKGAAGHPFFAVGTNRGDPAAFRPTGEGESAEAALEACLQDAGIHHRRRVRQTTG*
Ga0126379_111745461	3300010366	Tropical Forest Soil	MAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGTSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0126379_113791481	3300010366	Tropical Forest Soil	QVQVFRSLKGASARPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0126381_1003490622	3300010376	Tropical Forest Soil	MAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0126381_1015253242	3300010376	Tropical Forest Soil	VTFSTHLVEAAAVVGECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPGAFRPVGEGDSAEQALDACLAEAGIYHRRRVKQAGD*
Ga0126381_1019293362	3300010376	Tropical Forest Soil	TAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGTSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0126381_1037323632	3300010376	Tropical Forest Soil	MAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTCYEVKVFRALKGASAQPFFAVATNRADPAAFRPTGEGESAEAALQACLHDAGIHHRRRVRQTSG*
Ga0126383_112737242	3300010398	Tropical Forest Soil	RITFTAHIVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGTSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA*
Ga0124844_11572662	3300010868	Tropical Forest Soil	MKELLDWNRITFTDHMVEAAAVIAECQVAFDFEGREQVCYEVKVFRTIKGASSEPFFALATNRADAAAFRPIGEGDSPEAALEA
Ga0126369_129023741	3300012971	Tropical Forest Soil	MDAVRWDRVTFSTHMVEAAAVVAECQVAFDFDGQEHVCYQVQVFRSLKGASARPFFAVATNRSDPAAFRPVGEVGSGEQALDACLAEAGIYHRRRVKQAGD*
Ga0132258_100472585	3300015371	Arabidopsis Rhizosphere	MKDSLDWSRIAFTDHMVEAAAIVAQCQVALDFEGREQVTYEVKVFRTLKGASPAPFFAVATNLGDPTAFRPIGEADTAEGALEACLAAAGIYHRRRVKQSGD*
Ga0132258_123503671	3300015371	Arabidopsis Rhizosphere	MPLDWDRIRFTPHMVEAAAVVAECQVVFDFEGREQVSYEVKVYRALKGAAGRPFFAIAANRSDPAGYRPTGEGDAPEEALEACLAEAGIYHRRRVQQGG*
Ga0132256_1033059101	3300015372	Arabidopsis Rhizosphere	MPLDWDRIRFTPHMVEAAAVVAECQVVFDFEGREQVSYEVKVYRALKGAAGRPFFAIAANRSDPAGYRPTGEGDAPEEALEACLAEA
Ga0132255_1005310991	3300015374	Arabidopsis Rhizosphere	VALDFEGREQVTYEGKVFRTLKGASPAPFFAVATNLGDPTAFRPIGEADTAEGALEACLAAAGIYHRRRVKQSGD*
Ga0182036_107568472	3300016270	Soil	VDDRDAMAPIAWDRITFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0182041_112634462	3300016294	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVRQTGA
Ga0182032_102273152	3300016357	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHRRRVQQTGA
Ga0182039_106351982	3300016422	Soil	VDDRTVMAPIAWDRVTFTAHMIEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGPGVQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0210387_103294482	3300021405	Soil	VDDRSVMAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGAAPQPFVAVATNRADPTAFRPTGEGASAEEALQACLHDAGIHHRRRVQQTGA
Ga0207663_113359331	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	AVVGECQVAFDFEGQEQVCYEVKVFRSLKGASTQPFFAVATNRSDPGAFRPLGEGDTAEAALDACLAAAGIHHRRRVKQAGD
Ga0170824_1250982371	3300031231	Forest Soil	MHDGRAMDAVRWDRVTFSTHMVEAAAVVGECQVAFDFEGQEQVCYEVKVFRALKGASAQPFFAVAMNRSDPGAFRPLGEGDTAETALDACLAAAGIHHRRRVKQAGD
Ga0170818_1057133402	3300031474	Forest Soil	MHDGRAMDAVRWDRVTFSTHMVEAAAVVGECQVAFDFEGQEQVCYEVKVFRALKGASAQPFFAVATNRSDPGAFRPLGEGETAEAALDACLAAAGIHHRRRVK
Ga0318534_100281342	3300031544	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318571_102514361	3300031549	Soil	VDDRDAMAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEDALQACLH
Ga0318573_100255821	3300031564	Soil	VDDRNAMAPIAWDRVTFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHRRRVQQT
Ga0318515_104640071	3300031572	Soil	MDAVRWDRVTFSTHMVEAAAVVAECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPAAFRPVGEGDSGEQALDAC
Ga0310915_103549122	3300031573	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318555_104705452	3300031640	Soil	VDDRDAMAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHRRRVQQTGA
Ga0318572_106457501	3300031681	Soil	VTFSTHMVEAAAVVAECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPAAFRPVGEGDSGEQALDACLAEAGIYHRRRVKQAGD
Ga0318493_103129091	3300031723	Soil	VDDRNAMAPFAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0306918_102437601	3300031744	Soil	TFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318502_106064332	3300031747	Soil	VDDRNAMAPIAWDRVTFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLQDAGIHHRRRV
Ga0318554_100480002	3300031765	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAG
Ga0318554_108572052	3300031765	Soil	AALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318521_102454022	3300031770	Soil	VDDRNAMAPIAWDRVTFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLQDAGIHHRRRVQQTGA
Ga0318546_106268582	3300031771	Soil	DDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318546_112740921	3300031771	Soil	VDDRDAMAPIAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHR
Ga0318498_100239941	3300031778	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGSSARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAG
Ga0318566_100173412	3300031779	Soil	VDDRNAMAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318566_104481732	3300031779	Soil	MDAVRWDRVTFSTHMVEAAAVVAECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPAAFRPVGEGDSGEQALDACLAEAGIYHRRRVKQAGD
Ga0318566_105775171	3300031779	Soil	VDDRNAMAPIAWDRVTFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEDALQACLH
Ga0318547_106067843	3300031781	Soil	CQVAFDFDGQEQVCYQVKVFRSLKGASARPFFAVATNRSDPAAFRPVGEGDSGEQALDACLAEAGIYHRRRVKQAGD
Ga0318529_104742541	3300031792	Soil	MAPIAWDRITFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRR
Ga0318503_101709632	3300031794	Soil	FTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318565_103892102	3300031799	Soil	MDAVRWDRVTFSTHMVEAAAVVAECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPAAFRPVGEGDSGEQALDACLAEAGIY
Ga0318568_104822481	3300031819	Soil	VDDRNAMAPFAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGPGVQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318511_105197682	3300031845	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318495_100097673	3300031860	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGSSARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0306919_111949952	3300031879	Soil	MDAVRWDRVTFSTHMVEAAVVVAECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPAAFRPVGEGDSGEQALDACLAEAGIYHRRRVKQAGD
Ga0318536_106464201	3300031893	Soil	SPTVDDRNAMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0306921_104662552	3300031912	Soil	MDAVRWDRVTFSTHMVEAAAVVAECQVAFDFDGQEQVCYQVQVFRSLKGASARPFFAVATNRSDPAAFRPVGEGDSGEQALDACLAEAGIYHR
Ga0310916_102191482	3300031942	Soil	DDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQNAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0310913_111943041	3300031945	Soil	RNAMAPIAWDRVTFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHRRRVQQTGA
Ga0306922_103297992	3300032001	Soil	VDDRNAMAPFAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSAAHPFIAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHRRRVQQTGA
Ga0318507_103350602	3300032025	Soil	VDDRNAMAPFAWDRITFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0310911_102812122	3300032035	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318549_105437722	3300032041	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLQDAGIHHRRRVQQTGA
Ga0318558_102933232	3300032044	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVVFDFDGREQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318504_102312711	3300032063	Soil	VDDRNAMAPIAWDRVTFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVRQTGA
Ga0318513_104327511	3300032065	Soil	VDDRNAMAPIAWDRVTFTAHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRV
Ga0306924_122767392	3300032076	Soil	VDDRDAMAPIAWDRITFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLQDAGIHHRRRVQQTGA
Ga0318518_101025492	3300032090	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAAQPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0318540_104634052	3300032094	Soil	VDDRTVMAPIAWDRVTFTAHMVEAAALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEDALQACLHDAGIHHRRRVRQTGA
Ga0307472_1021110301	3300032205	Hardwood Forest Soil	AAVVGECQVAFDFEGHEQVCYEVKVFRSLKGASTQPFFAVATKRSDPGAFRPLGEGDTAEAALDACLAAAGIHHRRRVKQAGD
Ga0306920_1011888282	3300032261	Soil	ALVAECHVAFDFDGHEQTAYEVKVFRVLKGPAARPFVAVATNRADPTAFRPTGEGESAEEALQACLHDAGIHHRRRVQQTGA
Ga0306920_1016084461	3300032261	Soil	SPTVDDRNAMAPIAWDRVTFTGHMVEAAALVAECHVAFDFEGHEQTAYEVKVFRVLKGSSAQPFVAVATNRADPTAFRPTGEGESAEEALQACLQDAGIHHRRRVQQTGA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092907

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences