NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F092900

Metagenome Family F092900

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092900
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 75 residues
Representative Sequence TGSEHEVLVQIDEEAVGYVERMTRRKLPAENSFWTTQAQRLLGDYLWKEGKVPPTRKLTIKDVDRDELPIAARWQTN
Number of Associated Samples 96
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.80 %
% of genes near scaffold ends (potentially truncated) 96.26 %
% of genes from short scaffolds (< 2000 bps) 92.52 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction Yes
3D model pTM-score0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (100.000 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere
(8.411 % of family members)
Environment Ontology (ENVO) Unclassified
(57.009 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(74.766 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 25.71%    β-sheet: 8.57%    Coil/Unstructured: 65.71%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13520AA_permease_2 41.12
PF01566Nramp 1.87
PF03693ParD_antitoxin 0.93
PF08924DUF1906 0.93
PF04012PspA_IM30 0.93
PF00375SDF 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG1842Phage shock protein ATranscription [K] 1.87
COG1914Mn2+ or Fe2+ transporter, NRAMP familyInorganic ion transport and metabolism [P] 1.87
COG3609Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domainTranscription [K] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2088090014|GPIPI_16795369All Organisms → cellular organisms → Bacteria → Acidobacteria3423Open in IMG/M
2162886013|SwBSRL2_contig_13808032All Organisms → cellular organisms → Bacteria901Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_104597446All Organisms → cellular organisms → Bacteria → Acidobacteria520Open in IMG/M
3300000787|JGI11643J11755_11703060All Organisms → cellular organisms → Bacteria521Open in IMG/M
3300001431|F14TB_101161498All Organisms → cellular organisms → Bacteria → Acidobacteria549Open in IMG/M
3300002907|JGI25613J43889_10000087All Organisms → cellular organisms → Bacteria17160Open in IMG/M
3300003324|soilH2_10417287All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria1329Open in IMG/M
3300004114|Ga0062593_102229256All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300004157|Ga0062590_101004411All Organisms → cellular organisms → Bacteria793Open in IMG/M
3300005289|Ga0065704_10600817All Organisms → cellular organisms → Bacteria586Open in IMG/M
3300005293|Ga0065715_10173847All Organisms → cellular organisms → Bacteria → Acidobacteria1527Open in IMG/M
3300005328|Ga0070676_11055000All Organisms → cellular organisms → Bacteria → Acidobacteria612Open in IMG/M
3300005334|Ga0068869_100698828All Organisms → cellular organisms → Bacteria → Acidobacteria865Open in IMG/M
3300005334|Ga0068869_101823068All Organisms → cellular organisms → Bacteria → Acidobacteria544Open in IMG/M
3300005340|Ga0070689_100622989All Organisms → cellular organisms → Bacteria936Open in IMG/M
3300005344|Ga0070661_101312242All Organisms → cellular organisms → Bacteria → Acidobacteria607Open in IMG/M
3300005354|Ga0070675_101218200All Organisms → cellular organisms → Bacteria693Open in IMG/M
3300005440|Ga0070705_100227453All Organisms → cellular organisms → Bacteria1295Open in IMG/M
3300005440|Ga0070705_100602897All Organisms → cellular organisms → Bacteria850Open in IMG/M
3300005440|Ga0070705_101049312All Organisms → cellular organisms → Bacteria664Open in IMG/M
3300005457|Ga0070662_100198574All Organisms → cellular organisms → Bacteria1590Open in IMG/M
3300005459|Ga0068867_101198231All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300005536|Ga0070697_101513428All Organisms → cellular organisms → Bacteria600Open in IMG/M
3300005536|Ga0070697_101877981All Organisms → cellular organisms → Bacteria → Acidobacteria536Open in IMG/M
3300005544|Ga0070686_101451374All Organisms → cellular organisms → Bacteria577Open in IMG/M
3300005545|Ga0070695_100703466All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300005548|Ga0070665_101298342All Organisms → cellular organisms → Bacteria738Open in IMG/M
3300005548|Ga0070665_101486865All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300005549|Ga0070704_100670162All Organisms → cellular organisms → Bacteria917Open in IMG/M
3300005577|Ga0068857_100602547All Organisms → cellular organisms → Bacteria1038Open in IMG/M
3300005578|Ga0068854_100738967All Organisms → cellular organisms → Bacteria853Open in IMG/M
3300005617|Ga0068859_103018664All Organisms → cellular organisms → Bacteria → Acidobacteria514Open in IMG/M
3300005841|Ga0068863_101696774All Organisms → cellular organisms → Bacteria → Acidobacteria641Open in IMG/M
3300005889|Ga0075290_1025780All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300005937|Ga0081455_10569638All Organisms → cellular organisms → Bacteria745Open in IMG/M
3300006049|Ga0075417_10025365All Organisms → cellular organisms → Bacteria → Acidobacteria2407Open in IMG/M
3300006796|Ga0066665_11603344All Organisms → cellular organisms → Bacteria → Acidobacteria512Open in IMG/M
3300006854|Ga0075425_103053875All Organisms → cellular organisms → Bacteria → Acidobacteria511Open in IMG/M
3300006871|Ga0075434_102524054All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300006904|Ga0075424_102042535All Organisms → cellular organisms → Bacteria → Acidobacteria604Open in IMG/M
3300009011|Ga0105251_10593460All Organisms → cellular organisms → Bacteria525Open in IMG/M
3300009094|Ga0111539_10134600All Organisms → cellular organisms → Bacteria2894Open in IMG/M
3300009094|Ga0111539_10858580All Organisms → cellular organisms → Bacteria1056Open in IMG/M
3300009098|Ga0105245_11095454All Organisms → cellular organisms → Bacteria843Open in IMG/M
3300009100|Ga0075418_10603726All Organisms → cellular organisms → Bacteria1181Open in IMG/M
3300009147|Ga0114129_11868543All Organisms → cellular organisms → Bacteria729Open in IMG/M
3300009148|Ga0105243_12071185All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300009148|Ga0105243_12255752All Organisms → cellular organisms → Bacteria → Acidobacteria582Open in IMG/M
3300009162|Ga0075423_12812425All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300009174|Ga0105241_10909254All Organisms → cellular organisms → Bacteria818Open in IMG/M
3300009174|Ga0105241_11466894All Organisms → cellular organisms → Bacteria655Open in IMG/M
3300009176|Ga0105242_10688352All Organisms → cellular organisms → Bacteria999Open in IMG/M
3300010038|Ga0126315_10086364All Organisms → cellular organisms → Bacteria1776Open in IMG/M
3300010041|Ga0126312_11356398All Organisms → cellular organisms → Bacteria → Acidobacteria527Open in IMG/M
3300010397|Ga0134124_11453748All Organisms → cellular organisms → Bacteria712Open in IMG/M
3300010399|Ga0134127_12197631All Organisms → cellular organisms → Bacteria631Open in IMG/M
3300010400|Ga0134122_10403557All Organisms → cellular organisms → Bacteria1208Open in IMG/M
3300010403|Ga0134123_13501184All Organisms → cellular organisms → Bacteria → Acidobacteria508Open in IMG/M
3300011119|Ga0105246_10400109All Organisms → cellular organisms → Bacteria → Acidobacteria1140Open in IMG/M
3300011431|Ga0137438_1059968All Organisms → cellular organisms → Bacteria → Acidobacteria1136Open in IMG/M
3300012199|Ga0137383_10626719All Organisms → cellular organisms → Bacteria → Acidobacteria786Open in IMG/M
3300012354|Ga0137366_10109732All Organisms → cellular organisms → Bacteria2088Open in IMG/M
3300012360|Ga0137375_11354605All Organisms → cellular organisms → Bacteria533Open in IMG/M
3300012363|Ga0137390_10772990All Organisms → cellular organisms → Bacteria919Open in IMG/M
3300012509|Ga0157334_1053307All Organisms → cellular organisms → Bacteria → Acidobacteria564Open in IMG/M
3300012511|Ga0157332_1085681All Organisms → cellular organisms → Bacteria → Acidobacteria515Open in IMG/M
3300012519|Ga0157352_1097891All Organisms → cellular organisms → Bacteria → Acidobacteria516Open in IMG/M
3300012989|Ga0164305_10775614All Organisms → cellular organisms → Bacteria792Open in IMG/M
3300013100|Ga0157373_10206039All Organisms → cellular organisms → Bacteria1387Open in IMG/M
3300013297|Ga0157378_11167112All Organisms → cellular organisms → Bacteria809Open in IMG/M
3300013306|Ga0163162_11926918All Organisms → cellular organisms → Bacteria → Acidobacteria677Open in IMG/M
3300013308|Ga0157375_12145736All Organisms → cellular organisms → Bacteria → Acidobacteria665Open in IMG/M
3300014325|Ga0163163_10805097All Organisms → cellular organisms → Bacteria1003Open in IMG/M
3300014745|Ga0157377_11235581All Organisms → cellular organisms → Bacteria → Acidobacteria580Open in IMG/M
3300014745|Ga0157377_11765258All Organisms → cellular organisms → Bacteria → Acidobacteria501Open in IMG/M
3300015371|Ga0132258_12564277All Organisms → cellular organisms → Bacteria1274Open in IMG/M
3300015372|Ga0132256_101288589All Organisms → cellular organisms → Bacteria843Open in IMG/M
3300015373|Ga0132257_102198833All Organisms → cellular organisms → Bacteria → Acidobacteria714Open in IMG/M
3300018027|Ga0184605_10380186All Organisms → cellular organisms → Bacteria634Open in IMG/M
3300018920|Ga0190273_10464030All Organisms → cellular organisms → Bacteria914Open in IMG/M
3300019883|Ga0193725_1048042All Organisms → cellular organisms → Bacteria1098Open in IMG/M
3300025911|Ga0207654_11422359All Organisms → cellular organisms → Bacteria → Acidobacteria506Open in IMG/M
3300025920|Ga0207649_10096602All Organisms → cellular organisms → Bacteria1947Open in IMG/M
3300025925|Ga0207650_11874755All Organisms → cellular organisms → Bacteria507Open in IMG/M
3300025926|Ga0207659_11177654All Organisms → cellular organisms → Bacteria659Open in IMG/M
3300025932|Ga0207690_10222060All Organisms → cellular organisms → Bacteria → Acidobacteria1446Open in IMG/M
3300025934|Ga0207686_10736137All Organisms → cellular organisms → Bacteria786Open in IMG/M
3300025935|Ga0207709_10123889All Organisms → cellular organisms → Bacteria1750Open in IMG/M
3300025937|Ga0207669_11765753All Organisms → cellular organisms → Bacteria → Acidobacteria528Open in IMG/M
3300025941|Ga0207711_10991204All Organisms → cellular organisms → Bacteria780Open in IMG/M
3300025949|Ga0207667_10607275All Organisms → cellular organisms → Bacteria1103Open in IMG/M
3300025961|Ga0207712_10598159All Organisms → cellular organisms → Bacteria954Open in IMG/M
3300026023|Ga0207677_10497964All Organisms → cellular organisms → Bacteria1053Open in IMG/M
3300026035|Ga0207703_10632876All Organisms → cellular organisms → Bacteria → Acidobacteria1014Open in IMG/M
3300026041|Ga0207639_10736894All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300026089|Ga0207648_11643653All Organisms → cellular organisms → Bacteria603Open in IMG/M
3300026095|Ga0207676_10065540All Organisms → cellular organisms → Bacteria2892Open in IMG/M
3300026095|Ga0207676_11358356All Organisms → cellular organisms → Bacteria706Open in IMG/M
3300026116|Ga0207674_10677639All Organisms → cellular organisms → Bacteria995Open in IMG/M
3300026320|Ga0209131_1000028All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes148677Open in IMG/M
3300028379|Ga0268266_10784998All Organisms → cellular organisms → Bacteria920Open in IMG/M
3300031538|Ga0310888_10527889All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300031720|Ga0307469_11996050All Organisms → cellular organisms → Bacteria563Open in IMG/M
3300031908|Ga0310900_10143560All Organisms → cellular organisms → Bacteria1605Open in IMG/M
3300031995|Ga0307409_102435324All Organisms → cellular organisms → Bacteria → Acidobacteria552Open in IMG/M
3300032075|Ga0310890_10056294All Organisms → cellular organisms → Bacteria2277Open in IMG/M
3300032075|Ga0310890_11490927All Organisms → cellular organisms → Bacteria557Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere8.41%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.54%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere6.54%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil4.67%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere4.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere4.67%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.74%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere3.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.74%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere3.74%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere3.74%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere2.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.80%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.87%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.87%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.87%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere1.87%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.93%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Sugarcane Root And Bulk SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil0.93%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil0.93%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
2088090014Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
2162886013Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000787Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300001431Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemlyEnvironmentalOpen in IMG/M
3300002907Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cmEnvironmentalOpen in IMG/M
3300003324Sugarcane bulk soil Sample H2EnvironmentalOpen in IMG/M
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005334Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2Host-AssociatedOpen in IMG/M
3300005340Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaGEnvironmentalOpen in IMG/M
3300005344Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaGHost-AssociatedOpen in IMG/M
3300005354Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005536Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaGEnvironmentalOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005578Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2Host-AssociatedOpen in IMG/M
3300005617Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2Host-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300005889Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_201EnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300009011Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaGHost-AssociatedOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009162Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010041Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104AEnvironmentalOpen in IMG/M
3300010397Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011431Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT157_2EnvironmentalOpen in IMG/M
3300012199Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012354Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012509Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6EnvironmentalOpen in IMG/M
3300012511Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_10EnvironmentalOpen in IMG/M
3300012519Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300013100Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaGHost-AssociatedOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300013308Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014745Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaGHost-AssociatedOpen in IMG/M
3300015371Combined assembly of cpr5 and col0 rhizosphere and soilHost-AssociatedOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018920Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 ISEnvironmentalOpen in IMG/M
3300019883Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2a2EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025920Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025925Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025926Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025937Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025949Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026041Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
GPIPI_025286702088090014SoilRFRVTSPSGTEHEVLVVIDDEAVGYVERMTRRKLPPENSFWTGQAERLLSDFLWKEGKVPPTRKLKLIDVDRDELPMAARWQMN
SwBSRL2_0500.000023102162886013Switchgrass RhizosphereDEEAVGYVERMTRRKLPPENSFWTTQAQRLLGDYLWREGKVPPTRTLTIRDVDRDELPIAARWQSN
INPhiseqgaiiFebDRAFT_10459744623300000364SoilLVLIDDEAVGYVERMTRRRLPAENSFWTGQAERLLSDYLWKEGKVPPTRTLTVKDVDRDELPMAARWQST*
JGI11643J11755_1170306013300000787SoilHEVLVQIDDEAVGYVERMTRRKLPAENSFWTSQAQRLLADYLWQQGKLPSTRKLTIRDVDRDEIPIAARWQTS*
F14TB_10116149813300001431SoilPNERRFKVKSPEGTEHEVLVLIDEEAVGYVERMTRRKLPAENSFWTGQAERLLSDYLWKEGKVPPTRKLTIRDVDRDELPMAARWQNN*
JGI25613J43889_1000008773300002907Grasslands SoilVQIDEEAVGYVERMIRRKLPAENSFWSTQAQRLLGDYLWQEGKVPPTRKLTIKDVDRDALPIAARWQTT*
soilH2_1041728743300003324Sugarcane Root And Bulk SoilEHEVLVRIGEEAVGYVERMTRRRLPAQSLFWTIQAQRVLSDYLWKEGKVPPTRSLSVRDVDRDELPVAARW*
Ga0062593_10222925613300004114SoilEAIGYVERMTRRKLPPENSFWTGQAERLLSDFLWKEGKVPSPRKLTLTDVDRDELPMAARWQMN*
Ga0062590_10100441113300004157SoilVQIDEEAVAYVGRMTRRHLPPENSFWSGQAQRLLSDYLWKEGKIPPTRRLTVKDVDRDDLPMAARWQSI*
Ga0065704_1060081723300005289Switchgrass RhizosphereVGYVERMTRRKLSPENSFWTGQAERLLSDYLWKEGKVPPTRILIIKDVDRDELPMAARWQSN*
Ga0065715_1017384723300005293Miscanthus RhizosphereRFVVKSPTGTEHEVLVQIDEEAIGYVQRMTRRELPAESSFWTTQAQRLLSDYLWKEGKVPPTRKLILNDIDREELPIAARWQTN*
Ga0070676_1105500013300005328Miscanthus RhizosphereHEVLVLIDEEAVGYVERMTRRRLPPENSFWTGQAERLLSDYLWKEGKVPPARILRIKDVDRDELPMAARWQSN*
Ga0068869_10069882823300005334Miscanthus RhizosphereERRFIVKSPTGSEHEVLVEIDEEAIGYVERMTKRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT*
Ga0068869_10182306813300005334Miscanthus RhizosphereEPHERRFTVKGPTGGEHEVLVQIDEEAVAYVGRMTRRHLPPENSFWFGQAQRLLSDYLWKEGKVPPTRRLVVKDVDRDDLPMAARWQSI*
Ga0070689_10062298913300005340Switchgrass RhizosphereVKSPSGVEHEVLVQIDEEAVAYVERMTKKQLPAENSFWSGQAQRLLSDYLWKEGKIPPTRRLMVKDVDRDDLPMAARWQSI*
Ga0070661_10131224223300005344Corn RhizosphereERRFRVTSPSGTEHEVMVQIADEAIGYVERMIRRKLPPENSFWTGQAERLLSDFLWKEGKVPPTRKLTLTDVDRDELPMAARWQMN*
Ga0070675_10121820023300005354Miscanthus RhizosphereDEEAIGYVERMTKRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT*
Ga0070705_10022745323300005440Corn, Switchgrass And Miscanthus RhizosphereAVGYVERMTRRQLPAASSFWTSQAQRLLTDYLWKEGKIPPTRKLTIKEVDRDE*
Ga0070705_10060289713300005440Corn, Switchgrass And Miscanthus RhizosphereVKSPTGSEHEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGRVPPTRKLMITDVDRDELPIAARWQTS*
Ga0070705_10104931213300005440Corn, Switchgrass And Miscanthus RhizosphereVGYVERMTKRRLPPENSFWTGQAERLLSDYLWKQGKVPPTRKLTIRDVDRDELPMAARWQSN*
Ga0070662_10019857423300005457Corn RhizosphereLIDDEAVGYVERMTRRQLPPENSFWTGQAERLLSDYLWKEGKVPPARILRIKDVDRDELPMAARWQSN*
Ga0068867_10119823113300005459Miscanthus RhizosphereTGGDHEVLVEIDQEAVGYVERMTRRKLPAGNSFWTTQAQRLLSDYLWNEGRVPPTRKLRIREVDRDELPIAARWQTT*
Ga0070697_10151342823300005536Corn, Switchgrass And Miscanthus RhizosphereGSEHEVLVQIDEEAVGYVERMTRRKLPPESSFWTSQAQRLLGDFLWKEGKVPPTRKLTIKDVDRDELPIAARWQTT*
Ga0070697_10187798123300005536Corn, Switchgrass And Miscanthus RhizosphereLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGRVPPTRKLMITDVDRDELPIAARWQTS*
Ga0070686_10145137423300005544Switchgrass RhizosphereAVGYVERMTRRQLPPENSFWTSQAQRLLGDYLWKESKVPPTRKLTIKDVDRDELPIAARWQTT*
Ga0070695_10070346623300005545Corn, Switchgrass And Miscanthus RhizosphereLVQIDAEAVGYVERMTRRRLPAESSFWTSQAQRLLSDYLWQEGKVPPTRKLTIKDVDRDELPIAARWQTT*
Ga0070665_10129834213300005548Switchgrass RhizosphereGTEHEVLVLIDDEAVGYVERMTKRKLPPENSFWTGQAERLLSDYLWKEGKVPPTRKLTIRDVDRDELPMAARWQSN*
Ga0070665_10148686513300005548Switchgrass RhizosphereLVRSPSGTEHEVLVIIDDEAVGYVERMTRRRLPPENSFWSGQAERLLSDYLWKEGRVPPTRKLTLKDVDRDELPIAARWQSK*
Ga0070704_10067016223300005549Corn, Switchgrass And Miscanthus RhizosphereSPSGSEHEVLVQIDEEAVGYVERMTRRRLPPENSFWTTQAQRLLGDYLWQEGKVPPTRKLTIRDVDRDELPMAARWQSN*
Ga0068857_10060254723300005577Corn RhizosphereEVLVQIDEEAIGYVQRMTRRELPAESSFWTTQAQRLLSDYLWKEGKVPPTRKLILNDIDREELPIAARWQTN*
Ga0068854_10073896713300005578Corn RhizosphereLVEIDDEAIGYVERMTRRRLPPENSFWTTQAQRVLGDYLWKEGKVPPRRKLTITDVDRDELPIAARWQITLREEQQ*
Ga0068859_10301866423300005617Switchgrass RhizosphereGDHEVLVEIDQEAVGYVERMTRRKLPAGNSFWTTQAQRLLSDYLWNEGRVPPTRKLRIREVDRDELPIAARWQTT*
Ga0068863_10169677413300005841Switchgrass RhizospherePTGGEHEVLVQIDEEAVAYVGRMTRRHLPPENSFWSGQAQRLLSDYLWKEGKIPPTRRLMVKDVDRDDLPMAARWQSI*
Ga0075290_102578023300005889Rice Paddy SoilDVLIEIDTEAIAYVERMTGRKLSPGNSFWTSQAHRVLEDYLWREGKVPPTRRLTIRSVDRDELPIAARWKTN*
Ga0081455_1056963823300005937Tabebuia Heterophylla RhizosphereDEAIAYVERMTRRSLPPENSFWTTQAERLLSDYLWNEGQVPPTRKLTIKDIDREELPIAARWQTN*
Ga0075417_1002536533300006049Populus RhizosphereFIVKSPTGSEHDVLVKIDEEAVGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTIIDVDRDELPIAARWQTT*
Ga0066665_1160334423300006796SoilPSGSEHEVLVQIDEEAVGYVERMTRRQLPPENSFWTTQAQRLLGDYLWKEGKVPPTRKLTIREVDRDELPIAARWQTN*
Ga0075425_10305387513300006854Populus RhizosphereVEIDPEAVGYVERMTRRQLPAENSFWTTQAQRALGDYLWKEGKVPPTRRLTIKDVDRDELPIAARWQSN*
Ga0075434_10252405413300006871Populus RhizosphereRFRVKSPTGSEPEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGRVPPTRKLTITDVDRDELPIAARWQTS*
Ga0075424_10204253523300006904Populus RhizosphereERRFIVKSPTGSEHEVLVEIDEEAVGYVERMTRRKLPPENSFWTTQAQRVLSDYLWKEGKVPPTRKLTITDVDRDELPIAARWQIT*
Ga0105251_1059346013300009011Switchgrass RhizosphereHEVLVEMDEEAIGYVERMTKRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT*
Ga0111539_1013460013300009094Populus RhizosphereEVLIQIGEEAVGYVERMTRRRLPAENSFWTSQAQRLLTDYLWKEGKVPPTRKLTIRDVDRDELPMAARWQSS*
Ga0111539_1085858013300009094Populus RhizosphereAIGYVERMTRRRLPPENSFWTTQAQRVLGDYLWKEGKVPVTRKLTITDIDRDELPIAARWQTT*
Ga0105245_1109545423300009098Miscanthus RhizosphereVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTN*
Ga0075418_1060372613300009100Populus RhizosphereVKSPTGSEHDVLVKIDEEAVGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPLTRKLTITDVDRDELPVAARWQIT*
Ga0114129_1186854323300009147Populus RhizosphereVQIDEEAVGYVERMTRRKLPPESSFWTTQAQRLLGDYLWKEGKVPPTRKLTIKDVDRDELPIAARWQTT*
Ga0105243_1207118513300009148Miscanthus RhizosphereQIDEEAIGYVRRMTRRELPADNSFWTTQAQRLLSDYLWEEGKVPPTRKLILNDIDREELPIAARWQTT*
Ga0105243_1225575223300009148Miscanthus RhizosphereEHEVMVQIADEAIGYVERMIRRKLPPENSFWTGQAERLLSDFLWKEGKVPPTRKLTLTDVDRDELPMAARWQMN*
Ga0075423_1281242523300009162Populus RhizosphereIDVEAVGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGRVPPTRKLTITDVDRDELPIAARWQTS*
Ga0105241_1090925423300009174Corn RhizosphereVVIDGEAVGYVERMTKRRLPPENSFWTGQAERLLSDYLWKQGKVPPTRKLTIRDVDRDELPMAARWQSN*
Ga0105241_1146689423300009174Corn RhizosphereVVKSPTGTEHEVLVQIDEEAIGYVRRMTRRELPADNSFWTTQAQRLLSDYLWEEGKVPPTRKLILNDIDREELPIAARWQTN*
Ga0105242_1068835223300009176Miscanthus RhizosphereTGSEHEVLVQIDEEAVGYVERMTRRKLPAENSFWTTQAQRLLGDYLWKEGKVPPTRKLTIKDVDRDELPIAARWQTN*
Ga0126315_1008636433300010038Serpentine SoilVKSPAGSEHEVLVQIDEEAIGYVQRMTRRALPAENSFWTSQAQRLLSDYLWKEGKVPLTGKLILIDIDRDELPIAARWQTN*
Ga0126312_1135639823300010041Serpentine SoilKSPTGSEHEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT*
Ga0134124_1145374823300010397Terrestrial SoilVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGRVPPTRKLTITDVDRDELPIAARWQTS*
Ga0134127_1219763123300010399Terrestrial SoilIDEEAVGYVERMTRRKLPAENSFWTGQAQQLLSNYLWTEGRIPPTRRLIVKDVDRDDLPMAARWQAG*
Ga0134122_1040355713300010400Terrestrial SoilAVGYVERMTRRKLPAENSFWTTQAQRLLGDYLWKEGKVPPTRKLTIKDVDRDELPIAARWQTN*
Ga0134123_1350118413300010403Terrestrial SoilEEAVGYVERMTRRRLPAENSFWTNQAQRMLSDYLWNEGKVPPTRKLTMRDVDRDELPVAARWQSNSLLKTQS*
Ga0105246_1040010913300011119Miscanthus RhizosphereRRFIVKSPTGTEHEVLVLIDDEAVGYVERMTRRRLPPENSFWTGQAERLLSDYLWKEGKVPPARILRIKDVDRDELPMAARWQSN*
Ga0137438_105996813300011431SoilLKSPTGGEHEVLVQIDDEAVGYVERMTRRRLPAENSFWSGQAQRLLSDYLWKEGKVPPTRKLIVRDVDRDDLPMAARWHIN*
Ga0137383_1062671913300012199Vadose Zone SoilEPNERRFRVKSPTGSEHEVLVQIDEEAVGYVERMTRRQLPPGNSFWTDEARRLLGDYLWNEGDVPRTRKLTLKEISRNKLLIAERWRE*
Ga0137366_1010973223300012354Vadose Zone SoilTGSEHEVLVQIDEEAVGYVERLTRRQLPPENSFWTSQAQRLLSDYLWKEGKVPPTRKLTIKDVDRDEIPIAARWQST*
Ga0137375_1135460513300012360Vadose Zone SoilGGEHEVLVQIDGEAVGYVERMTRRQLPAENSFWTSQAQRLLSDYLWTEGKVPPTRKLTIKDVDRDELPVAARWQST*
Ga0137390_1077299013300012363Vadose Zone SoilTVRSPTGSEHEVLVQIDEEAVGYVERMTRRKLPAENSFWTSQAQRLLSDYLWKEGKVPPTRKLTIIDVDRDELPIAARWQSS*
Ga0157334_105330723300012509SoilHEVLVLIDDEAVGYVERMTRRKLPAENSFWTGQAERLLSDYLWKEGKVPPTRILIIKDVDRDELPMAARWQSN*
Ga0157332_108568123300012511SoilRFRVTSPSGTEHEVLVVIDDEAIGYVERMTRRKLPPENSFWTGQAERLLSDFLWKEGKVPPNKKLTLMDVDRDELPMAARWQMN*
Ga0157352_109789123300012519Unplanted SoilDEAIGYVERMIRRKLPPENSFWTGQAERLLSDFLWKEGKVPPTRKLTLTDVDRDELPMAARWQMN*
Ga0164305_1077561423300012989SoilTGSEHEVLVQIDEEAVGYVERMTRRQLPPENSFWTSQAQRLLGDYLWKESKVPPTRKLTIKDVDRDELPIAARWQTT*
Ga0157373_1020603923300013100Corn RhizosphereLVQIDEDAVGYVERMTRRKLPAENSFWTSQAQRLLGDYLWKEGKVPPTRKLTIKDVDRDELPIAARWQTN*
Ga0157378_1116711213300013297Miscanthus RhizosphereIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGAYLWKEGRVPPTRKLMITDVDRDELPIAARWQTS*
Ga0163162_1192691823300013306Switchgrass RhizosphereRFRVKSPTGGDHEVLVEIDQEAVGYVERMTRRKLPAENSFWTTQAQRLLSDYLWNEGRVPPTRELRIREVDRDELPIAARWQTT*
Ga0157375_1214573623300013308Miscanthus RhizosphereGSEHEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRRLTITDVDRDELPIAARWQTI*
Ga0163163_1080509713300014325Switchgrass RhizosphereVKSPTGGEHEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT*
Ga0157377_1123558123300014745Miscanthus RhizosphereVEIDDEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRRLTITDVDRDELPIAARWQLT*
Ga0157377_1176525823300014745Miscanthus RhizosphereMVQIADEAIGYVERMIRRKLPPENSFWTGQAERLLSDFLWKEGKVPPTRKLTLTDVDRDELPMAARWQMN*
Ga0132258_1256427723300015371Arabidopsis RhizosphereKSPTGSEHEVLVQIDEEAIAYVERMTRRELPAENSFWTTQAERLLADYLWTEGKVPATRRLTLKDVNRDEIPIAARWQANYR*
Ga0132256_10128858923300015372Arabidopsis RhizosphereVGYVERMTRRKLPPENWFWTTQAQRFLGDYLGKERKVPPTRKLTIKDVDRDELPIAARWQIT*
Ga0132257_10219883323300015373Arabidopsis RhizosphereRRFRVTSPSGTEHEVLVVIDDEAIGYVERMTRRKLPPENSFWTGQAERLLSDFLWKEGKVPPTRKLTLTDVDRDELPMAARWQMN*
Ga0184605_1038018623300018027Groundwater SedimentVLVKIDEEAVGYVERMTRRQLPAENSFWTIQAQRLLSDYLWKEGKVPPTRKLTIKDVDRDELPMAARWQST
Ga0190273_1046403013300018920SoilAVGYVERMIRRKLPAENSFWTSQAQRVLSDYLWKEGRVPPTRKLTIKDVDRDELPMAARWQST
Ga0193725_104804223300019883SoilIGYVERMTRRRLPAENSFWSGQAQRLLSDYLWKEGKVPPTRKLIVRDVDRDDLPMAARWHIN
Ga0207654_1142235923300025911Corn RhizosphereRRFRVRSPTGSEHEVLVKIDEEAVGYVERMIRRKLPPENLFWTTQAQRVLADYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT
Ga0207649_1009660213300025920Corn RhizosphereSPLGTEHEVLVVIDGEAVGYVERMTKRRLPPENSFWTGQAERLLSDYLWKQGKVPPTRKLTIRDVDRDELPMAARWQSN
Ga0207650_1187475513300025925Switchgrass RhizosphereVQIDDEAVGYVERMTRRKLPAENSFWTSQAQRLLADYLWQQGKLPPTRKLTIRDVDRDEIPIAARWQTS
Ga0207659_1117765423300025926Miscanthus RhizosphereDEEAIGYVERMTKRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT
Ga0207690_1022206023300025932Corn RhizosphereERRFIVKSPVGTEHEVLVVIDGEAVGYVERMTKRRLPPENSFWTGQAERLLSDYLWKQGKVPPTRKLTIRDVDRDELPMAARWQSN
Ga0207686_1073613713300025934Miscanthus RhizosphereTPTGSEHEVLVQIDEEAVGYVERMTRRRLPAENSFWTTQAQRLLGDYLWKEGKVPPTRKLTIKEVNRDELPIAARWQAS
Ga0207709_1012388913300025935Miscanthus RhizosphereKSPAGSEHEVLVEIDDEAIGYVERMTRRRLPPENSFWTTQAQRVLGDYLWKEGKVPVTRKLTITDIDRDELPIAARWQTT
Ga0207669_1176575313300025937Miscanthus RhizosphereIDEEAVGYVERMTRRRLPPENSFWTGQAERLLSDYLWKEGKVPPARILRIKDVDRDELPMAARWQSN
Ga0207711_1099120423300025941Switchgrass RhizosphereVGYVERMTKRKLPPENSFWTGQAERLLSDYLWKEGKVPPTRKLTIRDVDRDELPMAARWQSN
Ga0207667_1060727513300025949Corn RhizosphereSPAGSEHEVLVEIDDEAIGYVERMTRRRLPPENSFWTTQAQRVLGDYLWKEGKVPVTRKLTITDIDRDELPIAARWQTT
Ga0207712_1059815913300025961Switchgrass RhizosphereQIDKEAVAYVERMTRRQLPPENSFWSGQAQRLLSDYLWKEGRVPPTRRLIVKDVDRDELPMAARWQNN
Ga0207677_1049796413300026023Miscanthus RhizosphereLVQIDEEAVGYVERMTRRQLPPENSFWTSQAQRLLGDYLWKESKVPPTRKLAIKDVDRDELPIAARWQTT
Ga0207703_1063287623300026035Switchgrass RhizosphereRFVVKSPAGSEHEVLVEIDDEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPVTRKLTITDIDRDELPIAARWQTT
Ga0207639_1073689423300026041Corn RhizosphereVKSPTGTEHEVLVLIDAEAVGYVERMTRRRLPPENSFWTGQAERLLSDYLWKEGKVPPTRILIIKDVDRDELPMAARWQSN
Ga0207648_1164365313300026089Miscanthus RhizosphereVRSPTESEHEVLVQIDEEAVGYVERMTRRRLPPENSFWTTQAQRLLGDYLWKEGKVPPTRTLIIRDIDRDELPIAARWPTSSAG
Ga0207676_1006554043300026095Switchgrass RhizosphereVLVEIDEEAVGYVERMTRRKLPSENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQIT
Ga0207676_1135835613300026095Switchgrass RhizosphereVKSPTGSDHEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT
Ga0207674_1067763923300026116Corn RhizosphereVKSPTGSEHEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTS
Ga0209131_10000281253300026320Grasslands SoilVLVQIDEEAVGYVERMIRRKLPAENSFWSTQAQRLLGDYLWQEGKVPPTRKLTIKDVDRDALPIAARWQTT
Ga0268266_1078499813300028379Switchgrass RhizosphereGTEHEVLVLIDDEAVGYVERMTKRKLPPENSFWTGQAERLLSDYLWKEGKVPPTRKLTIRDVDRDELPMAARWQSN
Ga0310888_1052788913300031538SoilVIIDEEAVGYVERMTKRRLPPENSFWTAQAERLLSDYLWNEGRVPPTRKLVIKDVDREELPIAARWQTNVHG
Ga0307469_1199605023300031720Hardwood Forest SoilIDDEAVGYVERMTRRKLPAENSFWTSQAERLLGDYLWKEGKIPPTRKLTITDVDRDELPMAARWQGT
Ga0310900_1014356013300031908SoilPTGSEHEVLVQIDEEAVGYVERMTRRRLSAENSFWTTQAQRRLADYLWNEGQVPPTRQLTIREVDRDELPIAARWQTT
Ga0307409_10243532423300031995RhizosphereIVKSPTGGEHEVLVEIDEEAIGYVERMTRRKLPPENSFWTTQAQRVLGDYLWKEGKVPPTRKLTITDVDRDELPIAARWQTT
Ga0310890_1005629413300032075SoilEVLIQIGEEAVGYVERMTRRRLPAENSFWTSQAQRLLTDYLWKEGKVPPTRKLTIRDVDRDELPMAARWQSS
Ga0310890_1149092713300032075SoilEEAIGYVQRMIRRELPAQNSFWTSQGQRLLADYLWKEGKVPPTRKLTLSEVDRDEVPIAARWQAT

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.