Metagenome / Metatranscriptome Family F092792

Basic Information
Family ID	F092792
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	100 residues
Representative Sequence	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRSPFRRRGSSS
Number of Associated Samples	82
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	87.85 %
% of genes near scaffold ends (potentially truncated)	32.71 %
% of genes from short scaffolds (< 2000 bps)	97.20 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (74.766 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (35.514 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (57.009 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 61.90% β-sheet: 0.00% Coil/Unstructured: 38.10%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF11941	DUF3459	2.80
PF00072	Response_reg	1.87
PF13546	DDE_5	0.93
PF01609	DDE_Tnp_1	0.93
PF01965	DJ-1_PfpI	0.93
PF13278	Obsolete Pfam Family	0.93
PF00128	Alpha-amylase	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.93
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.93
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.93
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.93
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.93
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.93
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.93
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.93
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
All Organisms	root	All Organisms	25.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
cellular organisms	root	All Organisms → cellular organisms	25.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	25.23 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.69 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.89 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	12.15 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.87 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Bradyrhizobium barranii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	74.77 %
Bradyrhizobium sp. CCBAU 051011	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	0.93 %
Bradyrhizobium sp. JYMT SZCCT0180	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0180	0.93 %
Bradyrhizobium barranii subsp. apii	subspecies	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. apii	0.93 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459010\|GIO7OMY01CFHEG	Not Available	509	Open in IMG/M
3300005093\|Ga0062594_103038358	Not Available	524	Open in IMG/M
3300005337\|Ga0070682_100683708	Not Available	821	Open in IMG/M
3300005337\|Ga0070682_100876062	Not Available	736	Open in IMG/M
3300005338\|Ga0068868_100320635	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. CCBAU 051011	1320	Open in IMG/M
3300005345\|Ga0070692_10909873	Not Available	609	Open in IMG/M
3300005347\|Ga0070668_100754594	Not Available	862	Open in IMG/M
3300005355\|Ga0070671_101142340	Not Available	685	Open in IMG/M
3300005435\|Ga0070714_102098362	Not Available	551	Open in IMG/M
3300005436\|Ga0070713_101848723	Not Available	586	Open in IMG/M
3300005437\|Ga0070710_11492885	Not Available	508	Open in IMG/M
3300005438\|Ga0070701_11097072	Not Available	560	Open in IMG/M
3300005439\|Ga0070711_100245971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1400	Open in IMG/M
3300005439\|Ga0070711_100407709	All Organisms → cellular organisms → Bacteria	1105	Open in IMG/M
3300005456\|Ga0070678_100457548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1119	Open in IMG/M
3300005457\|Ga0070662_101208512	Not Available	650	Open in IMG/M
3300005457\|Ga0070662_101889817	Not Available	516	Open in IMG/M
3300005545\|Ga0070695_101690828	Not Available	530	Open in IMG/M
3300005719\|Ga0068861_101175199	Not Available	741	Open in IMG/M
3300005719\|Ga0068861_102173661	Not Available	556	Open in IMG/M
3300005843\|Ga0068860_101842930	Not Available	627	Open in IMG/M
3300005844\|Ga0068862_100612083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1047	Open in IMG/M
3300006163\|Ga0070715_10315451	Not Available	842	Open in IMG/M
3300006173\|Ga0070716_100415173	Not Available	972	Open in IMG/M
3300006175\|Ga0070712_100584922	Not Available	943	Open in IMG/M
3300006175\|Ga0070712_100596357	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	935	Open in IMG/M
3300006358\|Ga0068871_101428428	Not Available	653	Open in IMG/M
3300009101\|Ga0105247_11442494	Not Available	559	Open in IMG/M
3300009148\|Ga0105243_12588847	Not Available	547	Open in IMG/M
3300009176\|Ga0105242_10205651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1751	Open in IMG/M
3300010154\|Ga0127503_10901062	Not Available	693	Open in IMG/M
3300010371\|Ga0134125_11964286	Not Available	636	Open in IMG/M
3300010375\|Ga0105239_11284605	Not Available	844	Open in IMG/M
3300010397\|Ga0134124_11955422	Not Available	623	Open in IMG/M
3300010399\|Ga0134127_12029033	Not Available	653	Open in IMG/M
3300010400\|Ga0134122_12208004	Not Available	594	Open in IMG/M
3300010400\|Ga0134122_13209766	Not Available	512	Open in IMG/M
3300010401\|Ga0134121_11379021	Not Available	714	Open in IMG/M
3300010403\|Ga0134123_10713765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0180	982	Open in IMG/M
3300010403\|Ga0134123_12320618	Not Available	600	Open in IMG/M
3300010403\|Ga0134123_12529080	Not Available	580	Open in IMG/M
3300011119\|Ga0105246_11324673	Not Available	668	Open in IMG/M
3300012212\|Ga0150985_116000501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1067	Open in IMG/M
3300012212\|Ga0150985_122741082	Not Available	656	Open in IMG/M
3300012469\|Ga0150984_104851174	Not Available	687	Open in IMG/M
3300012897\|Ga0157285_10192584	Not Available	636	Open in IMG/M
3300012955\|Ga0164298_10201834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1163	Open in IMG/M
3300012955\|Ga0164298_11147652	Not Available	585	Open in IMG/M
3300012957\|Ga0164303_10072322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1614	Open in IMG/M
3300012957\|Ga0164303_10878784	Not Available	625	Open in IMG/M
3300012958\|Ga0164299_10896586	Not Available	643	Open in IMG/M
3300012960\|Ga0164301_11290045	Not Available	591	Open in IMG/M
3300012960\|Ga0164301_11333201	All Organisms → cellular organisms → Bacteria → Proteobacteria	583	Open in IMG/M
3300012984\|Ga0164309_10623157	Not Available	845	Open in IMG/M
3300012984\|Ga0164309_10691672	Not Available	808	Open in IMG/M
3300012985\|Ga0164308_10318969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1242	Open in IMG/M
3300012985\|Ga0164308_11714551	Not Available	583	Open in IMG/M
3300012986\|Ga0164304_10659147	Not Available	789	Open in IMG/M
3300012986\|Ga0164304_11012129	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	659	Open in IMG/M
3300012986\|Ga0164304_11184079	Not Available	616	Open in IMG/M
3300012987\|Ga0164307_10665541	Not Available	811	Open in IMG/M
3300012987\|Ga0164307_10920693	Not Available	705	Open in IMG/M
3300012987\|Ga0164307_11597495	Not Available	552	Open in IMG/M
3300012988\|Ga0164306_10941293	Not Available	707	Open in IMG/M
3300012988\|Ga0164306_11792743	Not Available	533	Open in IMG/M
3300012989\|Ga0164305_10130878	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300012989\|Ga0164305_10689347	Not Available	833	Open in IMG/M
3300013096\|Ga0157307_1169550	Not Available	521	Open in IMG/M
3300013100\|Ga0157373_11516429	Not Available	512	Open in IMG/M
3300013297\|Ga0157378_13022494	Not Available	522	Open in IMG/M
3300013306\|Ga0163162_10686529	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1146	Open in IMG/M
3300013306\|Ga0163162_11371776	Not Available	804	Open in IMG/M
3300013306\|Ga0163162_11572185	Not Available	750	Open in IMG/M
3300013308\|Ga0157375_10881782	All Organisms → cellular organisms → Bacteria → Proteobacteria	1040	Open in IMG/M
3300015077\|Ga0173483_10037309	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300015372\|Ga0132256_101718805	Not Available	736	Open in IMG/M
3300015373\|Ga0132257_102857299	Not Available	629	Open in IMG/M
3300015374\|Ga0132255_103600587	Not Available	659	Open in IMG/M
3300017792\|Ga0163161_11908577	Not Available	528	Open in IMG/M
3300019356\|Ga0173481_10342207	Not Available	711	Open in IMG/M
3300024347\|Ga0179591_1021306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium barranii → Bradyrhizobium barranii subsp. apii	2092	Open in IMG/M
3300025898\|Ga0207692_11064596	Not Available	535	Open in IMG/M
3300025899\|Ga0207642_10186383	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300025905\|Ga0207685_10025490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2042	Open in IMG/M
3300025906\|Ga0207699_10451109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	923	Open in IMG/M
3300025915\|Ga0207693_10023883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4853	Open in IMG/M
3300025928\|Ga0207700_11554626	Not Available	586	Open in IMG/M
3300025931\|Ga0207644_11189807	Not Available	641	Open in IMG/M
3300025935\|Ga0207709_10832202	Not Available	747	Open in IMG/M
3300025938\|Ga0207704_10922615	Not Available	735	Open in IMG/M
3300025939\|Ga0207665_10612796	Not Available	851	Open in IMG/M
3300025961\|Ga0207712_10139456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1859	Open in IMG/M
3300025972\|Ga0207668_10529861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1018	Open in IMG/M
3300025981\|Ga0207640_11167315	Not Available	683	Open in IMG/M
3300026067\|Ga0207678_10849091	Not Available	807	Open in IMG/M
3300026118\|Ga0207675_101057508	Not Available	831	Open in IMG/M
3300026121\|Ga0207683_10678265	Not Available	955	Open in IMG/M
3300028381\|Ga0268264_11132921	Not Available	791	Open in IMG/M
3300031091\|Ga0308201_10298236	Not Available	573	Open in IMG/M
3300031184\|Ga0307499_10305334	Not Available	526	Open in IMG/M
3300031226\|Ga0307497_10567391	Not Available	570	Open in IMG/M
3300031740\|Ga0307468_100661038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	866	Open in IMG/M
3300031740\|Ga0307468_100961356	Not Available	747	Open in IMG/M
3300032174\|Ga0307470_11170367	Not Available	623	Open in IMG/M
3300032174\|Ga0307470_11889078	Not Available	508	Open in IMG/M
3300032205\|Ga0307472_100331999	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1239	Open in IMG/M
3300032205\|Ga0307472_100564327	Not Available	997	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	62.62%
Host-Associated	Host-Associated	37.38%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.68%
Plants	Host-Associated → Plants	37.38%
Aquatic	Environmental → Aquatic	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	61.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	18.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.76%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.99%
Loam	Environmental → Terrestrial → Soil → Loam	18.69%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.35%
Soil	Host-Associated → Plants → Rhizosphere → Soil	8.41%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.74%
Soil	Host-Associated → Plants → Rhizoplane → Soil	1.87%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.51%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	18.69%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	13.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	8.41%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	26.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	15.89%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	8.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	5.61%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.74%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	3.74%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.80%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.87%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.87%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459010	Grass soil microbial communities from Rothamsted Park, UK - December 2009 direct MP BIO1O1 lysis 0-9cm (no DNA from 10 to 21cm!!!)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005545	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010154	Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013096	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300024347	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F62_02012510	2170459010	Grass Soil	MLDEKQVQEADAAITRTVTAFVSEFESMWGRWENVAPRYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTAYAASSG
Ga0062594_1030383581	3300005093	Soil	MIDEKQVQKADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRD
Ga0070682_1006837081	3300005337	Corn Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGSSS*
Ga0070682_1008760621	3300005337	Corn Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRSPFRRRGSSS*
Ga0068868_1003206352	3300005338	Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSDHRVVRFRRRGSSS*
Ga0070692_109098731	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALTAYRDSELTSEDAAPQPDRRVVPFRRRGPSS*
Ga0070668_1007545941	3300005347	Switchgrass Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALTAYRDSELTSADAAPQPYHRVVRFRRRGSSS*
Ga0070671_1011423401	3300005355	Switchgrass Rhizosphere	MVDEKQVQEADAAIRQAVSAFVGEFESLWGRWENVAPAYVIESALLELCTELSVLAPEIKSVAGPATVRLLDALAAYRDSELKTPDAAPQPDRGSSPFRRS*
Ga0070714_1020983621	3300005435	Agricultural Soil	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALTAYRDSE
Ga0070713_1018487231	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS*
Ga0070710_114928851	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	TRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPPTVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS*
Ga0070701_110970722	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTVDAAPQPDRWRSPS
Ga0070711_1002459712	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MIDEKQVQEADAAVTQAVTAFVSEFESMWGRWENIAPAYVIESALLELCTELSVLTPEMKTVAGPATVKLLDALAAYRDSELTSADAVPQPDRWVVPFRRRGSSS*
Ga0070711_1004077092	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	TRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELRTAEAAPQPDRWRSPFRRRGSSS*
Ga0070678_1004575481	3300005456	Miscanthus Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS*
Ga0070662_1012085121	3300005457	Corn Rhizosphere	IDEKQVQEADAAITEAVSAFVSEFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTAGGPATVKLLDALAAYRDSELTTADAAPRPDRWWSPSRRRG*
Ga0070662_1018898172	3300005457	Corn Rhizosphere	MIDEKQVQEADAAITRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS*
Ga0070695_1016908281	3300005545	Corn, Switchgrass And Miscanthus Rhizosphere	MIDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGSSS*
Ga0068861_1011751991	3300005719	Switchgrass Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLVDALAAYRDSELKTPEAAPRPDRWRSAFRRGGSSS*
Ga0068861_1021736612	3300005719	Switchgrass Rhizosphere	VIDKKQVQEADAAITETVSAFVSKFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSELTTADAAPRPDRWWSPSRRRG*
Ga0068860_1018429301	3300005843	Switchgrass Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGSSS*
Ga0068862_1006120833	3300005844	Switchgrass Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWRRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALTAYRDSELTSADAAPQPDRWVVPFRR
Ga0070715_103154512	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENIAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELKTPEAAPQPDRWRFPFRRRGSS*
Ga0070716_1004151732	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSADAAPQPDRWVVPFRRRGPSS*
Ga0070712_1005849221	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSADAAPQPDHWVVPFRRRGSSS*
Ga0070712_1005963573	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWESVAPAYVIESGLLELCTELSVLAADIKIVAGPSTVRLLDALAAYRDSELKKADAPLQPDRWRSPTRRRG*
Ga0068871_1014284281	3300006358	Miscanthus Rhizosphere	MIDEKQVQEADAAVTQAVTAFVSEFESMWGRWENIAPAYVIESALLELCTELSVLTPEMKTVAGPATVKLLDALAAYRDSELTSADA
Ga0105247_114424941	3300009101	Switchgrass Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSADAAPQPDHWVVPFRRRGPSS*
Ga0105243_125888471	3300009148	Miscanthus Rhizosphere	MVDEKQVQEADAAVIEAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALTVYRDSELTSADAVPQPDRWVVPFRRRGSSS*
Ga0105242_102056512	3300009176	Miscanthus Rhizosphere	VIDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGPSS*
Ga0127503_109010621	3300010154	Soil	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAADIKTVAGPATVKLLDALAAYRDSELTTADAAPRPDRWWSPSRRRG*
Ga0134125_119642861	3300010371	Terrestrial Soil	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQP
Ga0105239_112846052	3300010375	Corn Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSADAAPQPDRCRSPFRRRGSSS*
Ga0134124_119554221	3300010397	Terrestrial Soil	MIDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLTPDIKAVASPATVKLLDALAPGLGVDVRRRRAPANRWVVPFRRRGPSS*
Ga0134127_120290331	3300010399	Terrestrial Soil	MIDEKQVQKADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPPTVKLLDALAAYRDSELTSADAAPQPDHRVVPFRRKGPSS*
Ga0134122_122080042	3300010400	Terrestrial Soil	MIDEKQVQEDDAAVTRTVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTVDAAPQP
Ga0134122_132097661	3300010400	Terrestrial Soil	MVDEKQVREADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGPSS*
Ga0134121_113790211	3300010401	Terrestrial Soil	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS*
Ga0134123_107137652	3300010403	Terrestrial Soil	MIDEKQVQEADAAITRAVTAFVSEFESMWGRWENVAPGYVIESTLLALCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELK
Ga0134123_123206181	3300010403	Terrestrial Soil	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPARPWQDRRHVKLLDALAAYRDSELTSDHRVVRFRRR
Ga0134123_125290801	3300010403	Terrestrial Soil	AFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPPTVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS*
Ga0105246_113246731	3300011119	Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTSADAAPQPDHWVVPFRRRGSSS*
Ga0150985_1160005011	3300012212	Avena Fatua Rhizosphere	MADEKQIQEADAAVTHVVSVFVSELESMWGRWENVAPAYVIESALLELCTELSVLAPEIKSVAGPATVKLLDALAAYRDSELTSADAVPQRDRWVVPFRRRG*
Ga0150985_1227410822	3300012212	Avena Fatua Rhizosphere	VIDEKQVQEADAAITEAVSAFVSKFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSELTTADAAPRPDRWWFPSRRRG*
Ga0150984_1048511741	3300012469	Avena Fatua Rhizosphere	VIDEKQVQEADAAITEAVSAFVSKFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALTAYRDSELTTADAAPRPDRWWSPSRRRG*
Ga0157285_101925841	3300012897	Soil	MIDEKQVQEADAAVTQAVRVFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPEIKSVAGPATLKLLDALAAYRDFGLTSADAAPKPEGRVAPFHRRGSSS*
Ga0164298_102018341	3300012955	Soil	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVVPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELKTPEAAPRPDRWRSPSVEEAHLPNPVSAAP*
Ga0164298_111476521	3300012955	Soil	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTEWSVLAADIKIVAGPSTVRLLDALAAYRNSELSKSDAPLQP
Ga0164303_100723221	3300012957	Soil	MLDEKQVQEADAAITRTVTAFVSEFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLIDALAAYRDSELTTADAAPRPDHWWSPSRRRG*
Ga0164303_108787841	3300012957	Soil	MIDEKQVQEADAAVTRAVAAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTADAAPQPDRWRSPFRRRGSSS*
Ga0164299_108965861	3300012958	Soil	MVDEKQVQEADSAVAKAVTAFVSEFASMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTTADAAPRPDRWWSPSRRRG*
Ga0164301_112900452	3300012960	Soil	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAADIKTVAGPATVKLLDALAAYRDSELTSADAAPQPDHW
Ga0164301_113332011	3300012960	Soil	AVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGTATVKLLDALTAYRDSELTSADAAPQPDRWVVPFRRRGSSS*
Ga0164309_106231571	3300012984	Soil	MVDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELRTAEAAPQPDRWRSPFRRRGSSS*
Ga0164309_106916721	3300012984	Soil	VIDKKQVQEADAAITEAVSAFVSEFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSELTTADAAPRPDHWWSPSRRRG*
Ga0164308_103189694	3300012985	Soil	VIDEKQVQEADAAITEAVSEFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTAGGPATVNLLDALAAYRDSELTTADAAPRPDRWWSPSRRRR*
Ga0164308_117145511	3300012985	Soil	MIDEKQVQEADAAITRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTIGGPPTVKLLHRLAAYRDSELRTAEAAPQPDRWRSPFRRRGSSS*
Ga0164304_106591472	3300012986	Soil	MVDEKQVQEADSAVAKAATAFVNEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSADAAPQPDHWVVPFRRRGSSSNRGPQGGSFPPKSRRS*
Ga0164304_110121291	3300012986	Soil	VIDEKQVQEADAAITEAVGAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTIAGPATVKLLDALAAYRDSELRTAEAAPQPDRWRSPFRRRGSSS*
Ga0164304_111840792	3300012986	Soil	VVIDEKQIQEADAAITEAVSAFVSEFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLIDALAAYRDSELTTADAAPRPDRWWSPSRRRG*
Ga0164307_106655411	3300012987	Soil	AVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKKVAGPSTMKLLEALAAYRDAGLTNADAVPQAEGWFRRRG*
Ga0164307_109206931	3300012987	Soil	VIDEKQVQEADAAITETVSAFVSKFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSELTTADAAPRPDRWWFPSRRRG*
Ga0164307_115974951	3300012987	Soil	MVDEKQVQEADSAVAKAVTAFVNEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKKVAGPPTVKLLDALAAYRDSELTTADAAPRPDHWWSPSRRRG*
Ga0164306_109412931	3300012988	Soil	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPGTVKLLDALTAYRDSELTSDHRVVRFRRRGSSS*
Ga0164306_117927431	3300012988	Soil	VQEADAAITEAVSAFVSEFESLWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLIDALAAYRDSELTTADAAPRPDRWWSPSRRRG*
Ga0164305_101308781	3300012989	Soil	DKTTARKAVQIASSVADCTSREADAAVIQGVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDPELTSADAAPQPDRWVVPFRRRGPSS*
Ga0164305_106893471	3300012989	Soil	MVDEKQVQEADAAVTEAVTAFVSEFELMWGRWENVAPAYVIESALLELCTELSVLTPDIKAVASPATVKLLDALGRLPGLGVDVRRRRAPANRW
Ga0157307_11695501	3300013096	Soil	MIDEKQVQEADAAVARAVTAFVSEFESMWGRWENLAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLEALAAYRDSELTTA
Ga0157373_115164291	3300013100	Corn Rhizosphere	MIDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVTGPATVKLLDALTAYRDSELTSADDAPQPDHWVVRFRRRGSSS*
Ga0157378_130224941	3300013297	Miscanthus Rhizosphere	MVDEKQVQEADAAVRQAVSAFISEFESLWGRWENVAPAYVIESALLELCTELSVLAPEIKSVAGPATVRLLDALAAYRDSELKTLDA
Ga0163162_106865293	3300013306	Switchgrass Rhizosphere	MIDEKQVQKADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRSPFRRRGSSS*
Ga0163162_113717761	3300013306	Switchgrass Rhizosphere	KQVQEADAAVTQAVTAFISEFESMWGRWENVAPAYVIECALLELCTELSVLTPDIKAVASPATVKLLDALAAYRDSELTSADAAPQPNRWVVPFHRRGSSSNRGPQGGSFPPKSRRS*
Ga0163162_115721852	3300013306	Switchgrass Rhizosphere	VIDKKQVQEADAAITETVSAFVSKFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSELTTADAAPRPDRWWFPSRRRG*
Ga0157375_108817823	3300013308	Miscanthus Rhizosphere	MIDEKQVQAADAAVTRAVTAFVSEFESMWGRWEIVAPAYVIESALLELCTELSVLAPDIKTVAGPATVKLVDALAAYRDSELKTPEAAPRPDRWRSAFRRGGSSS*
Ga0173483_100373092	3300015077	Soil	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRSPFRPRGSSS*
Ga0132256_1017188051	3300015372	Arabidopsis Rhizosphere	MVDEKQVQEADAAVAEAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALTAYRDSELTSEDAAPQPDRWVVPLRRRGPSS*
Ga0132257_1028572991	3300015373	Arabidopsis Rhizosphere	MIDEKQVQEADAAVTRTVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPPTVKLLDALAAYRDSELKTPDAAPQPDRGSSPFRRS*
Ga0132255_1036005871	3300015374	Arabidopsis Rhizosphere	MVDEKQVQEADAAIRQAVSAFVSEFESLWGRWENVAPTYVIESALLELCTELSVLAADIKTVAGPATVKLLDAMAAYRDSELTTPEAAPRPDRWRKRLIFL
Ga0163161_119085771	3300017792	Switchgrass Rhizosphere	MIDEKQVQEADAAVTRAVAAFVSEIESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRSPFRRRGSSS
Ga0173481_103422071	3300019356	Soil	MVDEKQVQEADAAVRQAVSAFVSDFESLWGRWENVAPAYVIESALLELCTELSVLAPEIKSAAGPATVKLLDALAAYRDSELTAADLRRS
Ga0179591_10213062	3300024347	Vadose Zone Soil	MADDRQFDEADAAVTQAVTAFVTEFESMWGRWDTVAPTYIVESALLELATELSALTDDIKDVAGPATLKLLDAFADYRDSRPEDR
Ga0207692_110645961	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRR
Ga0207642_101863833	3300025899	Miscanthus Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSILAPDIKTVAGPPTVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS
Ga0207685_100254902	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MIDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGSSS
Ga0207699_104511091	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSADAAP
Ga0207693_100238836	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSDHRVVRFRRRGSSS
Ga0207700_115546261	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS
Ga0207644_111898071	3300025931	Switchgrass Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAADIKTVAGPATVKLLDAMAAYRDSELTTPEAAPRPDRWR
Ga0207709_108322021	3300025935	Miscanthus Rhizosphere	MVDEKQVQEADAAVIEAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSADAAPQPDHWVVPFRRRGSYS
Ga0207704_109226152	3300025938	Miscanthus Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGPSS
Ga0207665_106127961	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MIDEKQVQVADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDPELTTPEAASQPH
Ga0207712_101394561	3300025961	Switchgrass Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALTAYRDSELTSADAAPQPDRWV
Ga0207668_105298611	3300025972	Switchgrass Rhizosphere	VIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLTPDIKAVASPATVKLLDALAAYRDSELTSADAAPQPNRWVVPFHRRGSSSNRGPQGGSFPPKSRRS
Ga0207640_111673151	3300025981	Corn Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELKTPEAAPQPDRWRFPFRRGGSSS
Ga0207678_108490912	3300026067	Corn Rhizosphere	MVDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPVTVKLLDALAAYRDSELTTPEAAPQPDRWRSPFRRRGSSS
Ga0207675_1010575081	3300026118	Switchgrass Rhizosphere	MIDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGSSS
Ga0207683_106782652	3300026121	Miscanthus Rhizosphere	MIDEKQVQEADAAVTRTVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRFPFRRRGSSS
Ga0268264_111329211	3300028381	Switchgrass Rhizosphere	MVDEKQVREADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKTVAGPGTVKLLDALAAYRDSELTSDHRVVRFRRRGSSS
Ga0308201_102982361	3300031091	Soil	MIDEKQVQEADAAVIQAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALTAYRDSELTSADAAPQPDRWRSPFRRRGSSS
Ga0307499_103053341	3300031184	Soil	VIDEKQVQEADAAITEAVSAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLTPDIKAVASPATVKLLDALAAYRDSELTTADAAPRPDRWWSPSRRIGSSS
Ga0307497_105673911	3300031226	Soil	VIDEKQVQEADAAITEAVSAFVSEFESLWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSELTTTDAAPRPDRWWSPSRRRG
Ga0307468_1006610382	3300031740	Hardwood Forest Soil	MLDEKQVQEADAAVTRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWVVPFRRRGSSS
Ga0307468_1009613561	3300031740	Hardwood Forest Soil	VIDKKQVQEADAAITETVSAFVSKFESMWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSELTTADAAPRPDRWWFP
Ga0307470_111703671	3300032174	Hardwood Forest Soil	VIDEKQVQEADAAITEAVSAFVSEFESLWGRWENVAPAYVIESTLLELCTELSVLSADIKTVGGPATVKLLDALAAYRDSE
Ga0307470_118890782	3300032174	Hardwood Forest Soil	VAKAVTAFVNEFESMWGRWENVAPAYVIESALLELCTELSVLAPDIKKVAGPPTVKLLDALAAYRDSELTTADAAPRPDRWWSPSRRRG
Ga0307472_1003319993	3300032205	Hardwood Forest Soil	MVDEKQVQEADAAVIEAVTAFVSEFESMWGRWENVAPAYVIESALLELCTELSVLAPEIKTVAGPATVKLLDALAAYRDSELTSADAAPQPDHWVVPFRRRGSSS
Ga0307472_1005643271	3300032205	Hardwood Forest Soil	MIDEKQVQEADAAITRAVTAFVSEFESMWGRWENVAPGYVIESTLLELCTELSVLAPDIKTVAGPATVKLLDALAAYRDSELTTPEAAPQPDRWRSPFRRRGSSS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092792

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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