Metagenome Family F092769

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092769
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	66 residues
Representative Sequence	MRELGKRTIQISIALGAIVGLIGCGEEASDVEAGTHDLGLSSINGLSSINGLSSINGLSSINGLS
Number of Associated Samples	75
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	92.16 %
% of genes near scaffold ends (potentially truncated)	95.33 %
% of genes from short scaffolds (< 2000 bps)	85.98 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (55.140 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (15.888 % of family members)
Environment Ontology (ENVO)	Unclassified (20.561 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.009 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 32.26% β-sheet: 0.00% Coil/Unstructured: 67.74%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF14200	RicinB_lectin_2	11.21
PF00652	Ricin_B_lectin	3.74
PF13432	TPR_16	1.87
PF08494	DEAD_assoc	1.87
PF13191	AAA_16	0.93
PF05231	MASE1	0.93
PF01695	IstB_IS21	0.93
PF14492	EFG_III	0.93
PF08281	Sigma70_r4_2	0.93
PF02374	ArsA_ATPase	0.93
PF04102	SlyX	0.93
PF00578	AhpC-TSA	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1201	Lhr-like helicase	Replication, recombination and repair [L]	1.87
COG0642	Signal transduction histidine kinase	Signal transduction mechanisms [T]	0.93
COG1484	DNA replication protein DnaC	Replication, recombination and repair [L]	0.93
COG2900	Uncharacterized coiled-coil protein SlyX (sensitive to lysis X)	Function unknown [S]	0.93
COG3447	Integral membrane sensor domain MASE1	Signal transduction mechanisms [T]	0.93
COG3851	Signal transduction histidine kinase UhpB, glucose-6-phosphate specific	Signal transduction mechanisms [T]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
All Organisms	root	All Organisms	43.93 %
Polyangium	genus	Polyangium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
cellular organisms	root	All Organisms → cellular organisms	43.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	43.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	12.15 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.67 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Firmicutes	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	7.48 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	4.67 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Clostridia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	6.54 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.67 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.93 %
Bacilli	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Eubacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales	6.54 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	3.74 %
Cytophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia	0.93 %
Bacillales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Clostridiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae	6.54 %
Cytophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Paenibacillaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae	0.93 %
Sorangiineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae	0.93 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Clostridium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium	6.54 %
Cohnella	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella	0.93 %
Hymenobacteraceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae	0.93 %
Microbacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium	0.93 %
Polyangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Clostridium botulinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	6.54 %
unclassified Cohnella	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella → unclassified Cohnella	0.93 %
Microbacterium yannicii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium yannicii	0.93 %
Sorangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium	0.93 %
Hymenobacter	genus	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Clostridium botulinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	6.54 %
unclassified Hymenobacter	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → unclassified Hymenobacter	0.93 %
Cohnella sp. OV330	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella → unclassified Cohnella → Cohnella sp. OV330	0.93 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.93 %
Microbacterium yannicii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium yannicii	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	55.14 %
Clostridium botulinum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	6.54 %
Hymenobacter sp. IS2118	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → unclassified Hymenobacter → Hymenobacter sp. IS2118	0.93 %
Cohnella sp. OV330	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella → unclassified Cohnella → Cohnella sp. OV330	0.93 %
Sorangium cellulosum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	0.93 %
Microbacterium yannicii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium yannicii	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Polyangium fumosum	species	Polyangium → Polyangium fumosum	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001408\|JGI20206J14855_1064653	Not Available	519	Open in IMG/M
3300002568\|C688J35102_117712877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	501	Open in IMG/M
3300002568\|C688J35102_120503378	Not Available	1124	Open in IMG/M
3300005439\|Ga0070711_101650295	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → Hymenobacteraceae → Hymenobacter → unclassified Hymenobacter → Hymenobacter sp. IS2118	561	Open in IMG/M
3300005530\|Ga0070679_100030477	All Organisms → cellular organisms → Bacteria	5325	Open in IMG/M
3300005541\|Ga0070733_10094460	Not Available	1904	Open in IMG/M
3300005541\|Ga0070733_10361974	Not Available	963	Open in IMG/M
3300005541\|Ga0070733_10964312	Not Available	573	Open in IMG/M
3300005563\|Ga0068855_100362646	All Organisms → cellular organisms → Bacteria	1594	Open in IMG/M
3300005563\|Ga0068855_101480402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	698	Open in IMG/M
3300005563\|Ga0068855_101483408	Not Available	697	Open in IMG/M
3300005602\|Ga0070762_10285923	All Organisms → cellular organisms → Bacteria	1035	Open in IMG/M
3300005614\|Ga0068856_101229397	Not Available	765	Open in IMG/M
3300005614\|Ga0068856_101507945	Not Available	686	Open in IMG/M
3300005712\|Ga0070764_10186670	All Organisms → cellular organisms → Bacteria	1157	Open in IMG/M
3300005764\|Ga0066903_103934534	All Organisms → cellular organisms → Bacteria	797	Open in IMG/M
3300005944\|Ga0066788_10066375	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300005950\|Ga0066787_10128081	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	561	Open in IMG/M
3300005993\|Ga0080027_10001941	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	8097	Open in IMG/M
3300005993\|Ga0080027_10251157	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Microbacterium → Microbacterium yannicii	697	Open in IMG/M
3300005995\|Ga0066790_10113238	All Organisms → cellular organisms → Bacteria	1164	Open in IMG/M
3300005995\|Ga0066790_10194325	Not Available	868	Open in IMG/M
3300006032\|Ga0066696_10996250	Not Available	533	Open in IMG/M
3300006055\|Ga0097691_1116646	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300006163\|Ga0070715_10829119	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Bacilli → Bacillales → Paenibacillaceae → Cohnella → unclassified Cohnella → Cohnella sp. OV330	564	Open in IMG/M
3300006176\|Ga0070765_100332896	All Organisms → cellular organisms → Bacteria	1409	Open in IMG/M
3300009551\|Ga0105238_11903979	Not Available	628	Open in IMG/M
3300010371\|Ga0134125_11924451	Not Available	643	Open in IMG/M
3300010375\|Ga0105239_13085352	Not Available	543	Open in IMG/M
3300010397\|Ga0134124_10777935	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300010399\|Ga0134127_10613277	All Organisms → cellular organisms → Bacteria	1118	Open in IMG/M
3300012971\|Ga0126369_13117469	Not Available	543	Open in IMG/M
3300013105\|Ga0157369_11996755	All Organisms → cellular organisms → Bacteria	588	Open in IMG/M
3300013105\|Ga0157369_12493702	Not Available	523	Open in IMG/M
3300013296\|Ga0157374_10511246	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300013296\|Ga0157374_10757556	Not Available	986	Open in IMG/M
3300013296\|Ga0157374_12348784	Not Available	560	Open in IMG/M
3300013307\|Ga0157372_11722851	All Organisms → cellular organisms → Bacteria	721	Open in IMG/M
3300016341\|Ga0182035_11170496	Not Available	686	Open in IMG/M
3300016341\|Ga0182035_11310458	Not Available	649	Open in IMG/M
3300017792\|Ga0163161_11899926	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	530	Open in IMG/M
3300021180\|Ga0210396_10555248	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300021181\|Ga0210388_10199699	All Organisms → cellular organisms → Bacteria	1750	Open in IMG/M
3300021401\|Ga0210393_10124675	Polyangium → Polyangium fumosum	2061	Open in IMG/M
3300021401\|Ga0210393_10202657	Not Available	1604	Open in IMG/M
3300021402\|Ga0210385_11464093	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	522	Open in IMG/M
3300021403\|Ga0210397_10317509	Not Available	1148	Open in IMG/M
3300021403\|Ga0210397_10645268	Not Available	811	Open in IMG/M
3300021403\|Ga0210397_10660943	Not Available	801	Open in IMG/M
3300021404\|Ga0210389_10270724	All Organisms → cellular organisms → Bacteria	1330	Open in IMG/M
3300021404\|Ga0210389_10474770	Not Available	984	Open in IMG/M
3300021404\|Ga0210389_11432812	Not Available	526	Open in IMG/M
3300021405\|Ga0210387_10257535	Not Available	1528	Open in IMG/M
3300021405\|Ga0210387_11163985	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300021405\|Ga0210387_11897044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	500	Open in IMG/M
3300021406\|Ga0210386_11150871	Not Available	657	Open in IMG/M
3300021433\|Ga0210391_10114236	All Organisms → cellular organisms → Bacteria	2127	Open in IMG/M
3300021433\|Ga0210391_10364488	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300025494\|Ga0207928_1001537	All Organisms → cellular organisms → Bacteria	3985	Open in IMG/M
3300025625\|Ga0208219_1024657	Not Available	1712	Open in IMG/M
3300025627\|Ga0208220_1107507	Not Available	744	Open in IMG/M
3300025633\|Ga0208480_1065898	Not Available	907	Open in IMG/M
3300025633\|Ga0208480_1087541	Not Available	752	Open in IMG/M
3300025898\|Ga0207692_10720320	Not Available	648	Open in IMG/M
3300025909\|Ga0207705_11276186	Not Available	561	Open in IMG/M
3300025924\|Ga0207694_10468132	Not Available	1053	Open in IMG/M
3300025928\|Ga0207700_11741716	Not Available	549	Open in IMG/M
3300026281\|Ga0209863_10000954	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	12224	Open in IMG/M
3300026281\|Ga0209863_10001658	All Organisms → cellular organisms → Bacteria	8442	Open in IMG/M
3300026291\|Ga0209890_10001011	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	12893	Open in IMG/M
3300026291\|Ga0209890_10180259	Not Available	687	Open in IMG/M
3300026294\|Ga0209839_10097781	Not Available	1004	Open in IMG/M
3300026294\|Ga0209839_10220596	Not Available	603	Open in IMG/M
3300027867\|Ga0209167_10322188	Not Available	837	Open in IMG/M
3300027867\|Ga0209167_10345826	Not Available	808	Open in IMG/M
3300027869\|Ga0209579_10686632	Not Available	554	Open in IMG/M
3300028563\|Ga0265319_1060834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1226	Open in IMG/M
3300028577\|Ga0265318_10218695	Not Available	696	Open in IMG/M
3300028666\|Ga0265336_10173114	All Organisms → cellular organisms → Bacteria	642	Open in IMG/M
3300028870\|Ga0302254_10121001	All Organisms → cellular organisms → Bacteria	959	Open in IMG/M
3300028906\|Ga0308309_10875053	Not Available	780	Open in IMG/M
3300028906\|Ga0308309_11854861	Not Available	509	Open in IMG/M
3300029923\|Ga0311347_10869460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	548	Open in IMG/M
3300029980\|Ga0302298_10192056	Not Available	666	Open in IMG/M
3300029989\|Ga0311365_10199943	Not Available	1721	Open in IMG/M
3300031238\|Ga0265332_10418777	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	553	Open in IMG/M
3300031240\|Ga0265320_10183237	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	938	Open in IMG/M
3300031247\|Ga0265340_10022175	All Organisms → cellular organisms → Bacteria	3249	Open in IMG/M
3300031251\|Ga0265327_10494366	Not Available	527	Open in IMG/M
3300031521\|Ga0311364_12409003	Not Available	513	Open in IMG/M
3300031595\|Ga0265313_10116914	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1167	Open in IMG/M
3300031595\|Ga0265313_10212496	Not Available	801	Open in IMG/M
3300031595\|Ga0265313_10261678	Not Available	703	Open in IMG/M
3300031712\|Ga0265342_10299100	Not Available	848	Open in IMG/M
3300031726\|Ga0302321_101595223	All Organisms → cellular organisms → Bacteria	753	Open in IMG/M
3300031939\|Ga0308174_10634971	Not Available	886	Open in IMG/M
3300031939\|Ga0308174_11645052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Clostridiaceae → Clostridium → Clostridium botulinum	551	Open in IMG/M
3300031939\|Ga0308174_11884113	Not Available	514	Open in IMG/M
3300032074\|Ga0308173_10904976	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300032829\|Ga0335070_11607510	Not Available	591	Open in IMG/M
3300032896\|Ga0335075_10847617	All Organisms → cellular organisms → Bacteria	847	Open in IMG/M
3300032954\|Ga0335083_10008214	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Sorangiineae → Polyangiaceae → Sorangium → Sorangium cellulosum	12776	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.96%
Host-Associated	Host-Associated	28.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.96%
Plants	Host-Associated → Plants	28.04%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	66.36%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.48%
Peat	Environmental → Terrestrial → Peat	5.61%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	39.25%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.02%
Loam	Environmental → Terrestrial → Soil → Loam	13.08%
Soil	Host-Associated → Plants → Rhizosphere → Soil	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.48%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	5.61%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.69%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	11.21%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.35%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.35%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.48%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	5.61%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.74%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.89%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	10.28%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	7.48%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	6.54%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	6.54%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	5.61%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	5.61%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.74%
Prmafrost Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil	3.74%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.74%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	3.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.80%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.87%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.87%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001408	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F52-2 deep-092012	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005944	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-048	Environmental	Open in IMG/M
3300005950	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 2 DNA2013-047	Environmental	Open in IMG/M
3300005993	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046	Environmental	Open in IMG/M
3300005995	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050	Environmental	Open in IMG/M
3300006032	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145	Environmental	Open in IMG/M
3300006055	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 deep-072012	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300025494	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025625	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-2 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025627	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 deep-092012 (SPAdes)	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025924	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026281	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)	Environmental	Open in IMG/M
3300026291	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049 (SPAdes)	Environmental	Open in IMG/M
3300026294	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028563	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG	Host-Associated	Open in IMG/M
3300028577	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG	Host-Associated	Open in IMG/M
3300028666	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG	Host-Associated	Open in IMG/M
3300028870	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Fen_E1_4	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029923	II_Fen_E1 coassembly	Environmental	Open in IMG/M
3300029980	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Fen_N3_3	Environmental	Open in IMG/M
3300029989	III_Fen_N1 coassembly	Environmental	Open in IMG/M
3300031238	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG	Host-Associated	Open in IMG/M
3300031240	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG	Host-Associated	Open in IMG/M
3300031247	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG	Host-Associated	Open in IMG/M
3300031251	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG	Host-Associated	Open in IMG/M
3300031521	III_Fen_E2 coassembly	Environmental	Open in IMG/M
3300031595	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG	Host-Associated	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300031726	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI20206J14855_10646531	3300001408	Arctic Peat Soil	MRDFGKRTIQISIALGAIVGLVGCGEEASTVQSGGHEDYALSSINGLSSINGL
C688J35102_1177128771	3300002568	Soil	MRELGKRTIQISIALGAIVSLIGCGEQAGDVETGTHDLGFSSINGLSSINGLSSINGLSSINGLSS
C688J35102_1205033782	3300002568	Soil	MRELGKRTIRISIAVGAIVGLVGCGEQASDVETGSHDLGFSSINGLSSINGLSSINGLSSINGLSS
Ga0070711_1016502951	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRELGKRTIQISIALGAIVGLIGCGEEASSVETGTHELGLTSFNGLTSINGVTSINGLTSVNGLTSINGLTSTNGLMTTAGGRKTVSYLVKC
Ga0070679_1000304773	3300005530	Corn Rhizosphere	MSEIGKRTIRITVAMGAIVGLIGCGEQSSQIQASQGAHEDYGLSSINGLSSINGLSSINGLSSINGLSS
Ga0070684_1019002571	3300005535	Corn Rhizosphere	MKDLGKRTLQISIGLGAIVGLIGCGEEPGTVQASSAHVEDYALSSANGLSGINGLSSANGLSSANGLS
Ga0070733_100944604	3300005541	Surface Soil	MKELGKRTIQISIALGAIVGLIGCGEQASEVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSI
Ga0070733_103619741	3300005541	Surface Soil	MRELGKRTIQISIALGAIASLIGCGGDQAGDIETSSHDFALSSINGLSSINGLSSINGLSSINGLSSING
Ga0070733_109643122	3300005541	Surface Soil	MTVEKRTIRISIAIGALVGLVGCAEQASDVESTSRDLGLSSINGLSSING
Ga0068855_1000415123	3300005563	Corn Rhizosphere	MSELGKRTIRITVAMGAIVGLIGCSEQSSQIRSSDGTHEDYALSSINGLSSINGLSSINGLSSIN
Ga0068855_1003626461	3300005563	Corn Rhizosphere	MTNLAVRTARIGIGLGAIVGLVGCGEQSGDVQANPHEDYGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGL
Ga0068855_1014804021	3300005563	Corn Rhizosphere	MTDLGKRTLRISVGLGAIVGLIGCGEQATDIQAAGTHEDYGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGL
Ga0068855_1014834081	3300005563	Corn Rhizosphere	MKDLGRRTLQIGIGLGAIVGLVGCGEQTSAVQSSAGHEDYSLSSINGLSSINGLSSING
Ga0070762_102859231	3300005602	Soil	MRELGKRTIQVSVAIGAIVGLIGCGEETSAVEAPSHDFALSAQNGLSSLNGLSSQNGLSSQNG
Ga0068856_1012293972	3300005614	Corn Rhizosphere	MHDLGKRTLQISIGLGVIVALVGCGEEAARIQSGSTHDDYGLSAVNGLSAINGLSAVN
Ga0068856_1015079452	3300005614	Corn Rhizosphere	MTNLAVRTARIGIGLGAIVGLVGCGEQSGDVQANPHEDYGLSSINGLSSINGLSSINGLSSINGLSSING
Ga0070764_101866702	3300005712	Soil	MRDLGKRTIQVSLAFGALVGLVGCGEEASTVQTGAGNHEDYGLSSINGLSSLNGLSSINGLSSI
Ga0066903_1039345341	3300005764	Tropical Forest Soil	MRELGKRTIQISIALGAIVSLIGCGQEASTVEGAHEDFGFSAFNGLSAINGLSSFNGLSSFNGLSAQNGLSAINGLSSFN
Ga0066788_100663751	3300005944	Soil	MERIGKRTIQISIALGAIVGLVGCGEEGSDVEASGHDFAESSMNGLSSINGLSS
Ga0066787_101280811	3300005950	Soil	MRTIGKRTIQIGITLGAIVGLVGCGQENSDVQTASHEDYGLSSINGLSSINGLSSINGLSSINGLSSINGLSSIN
Ga0080027_100019415	3300005993	Prmafrost Soil	MRDLTKRTIQVSIALGAIVGLVGCGQEASDVQSAGHEDYGLSSINGLSSINGLSSIN
Ga0080027_102511571	3300005993	Prmafrost Soil	MNALGKRTIQISIALGAIIGLVGCGEEASDVQTAGHEDYGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGLSSI
Ga0066790_101132381	3300005995	Soil	MREVSKRTIQISIALGAIVGLIGCGGDQASDIEMGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSI
Ga0066790_101943251	3300005995	Soil	MRQLGKRTIQISIALGAIVGLIGCGQQAGDVETGTHDLGLSSINGLSSINGLSSINGLSSING
Ga0066696_109962501	3300006032	Soil	MKELGKRTIQISIAIGAIVGLIGCGEEASTVEPGTHDFSLAGVNGLAAVNGLASANGLASANGLASANG
Ga0097691_11166462	3300006055	Arctic Peat Soil	MRELGKRTIQISIALGAIAGLVGCGEQAGNVETGTHDLGLSSINGLSSINGLSSINGLS
Ga0070715_108291191	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MREQGKRTIKISIAVGAIVGMVGCGEQASDVETGSHELALSSINGLSSINGLSSINGLSSINGLSSINGLSSING
Ga0070765_1003328961	3300006176	Soil	MRNLGKRTIQIGIALGAIVGLVGCGQENSDVQAASHEDYGLSSINGLSSINGLSSINGLSSINGL
Ga0105238_119039791	3300009551	Corn Rhizosphere	MHDLGKRTLQISIGLGVIVALVGCGDEAARIQSGSTHDDYGLSAINGLSAINGLSAINGLSAINGLSAINGLSAIN
Ga0134125_119244511	3300010371	Terrestrial Soil	MRTLGKRTIQISIGVGAIVGLIGCGEQASDVETGSHELALSSINGLSSINGLSSINGLSSINGLSS
Ga0105239_130853521	3300010375	Corn Rhizosphere	MKELGKRTIQISIAIGAIVGLIGCGEEASTVEPGTHDFGFAAVNGLASINGLAS
Ga0134124_107779352	3300010397	Terrestrial Soil	MRELGKRTIQISIALGAIAGLVGCGEQASDVETGTHELGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGLSSV
Ga0134127_106132771	3300010399	Terrestrial Soil	MTDLGKRTIQISIALGAIVGLIGCGAEQASDVESGTHDFGFVTTNGFASSNGFQ
Ga0126369_131174691	3300012971	Tropical Forest Soil	MSELGKRSIQISIAVGAIVGLIGCGEEASTVESGDHEFVQGLEGINGLAGINGLAGVNGLAAANGLA
Ga0157369_104175761	3300013105	Corn Rhizosphere	MKELGKRTIQVSIAMGAIVGLIGCHEEASTVEPGTHDFALAGVNGLAGIN
Ga0157369_119967551	3300013105	Corn Rhizosphere	MRELGKRTIQISIAIGAIVGLIGCGEEASTVEPGTHDFALAGINGLAGIN
Ga0157369_124937021	3300013105	Corn Rhizosphere	MSETGKRTIRITIALGAIVGLVGCTEQASPVQTSGNHEDYALSGINGLSAINGLSAINGLSGINGLSAINGLSAINGLSA
Ga0157374_105112462	3300013296	Miscanthus Rhizosphere	MRELGKRTIQISIALGAIVGLIGCGEEAGNVETGTHDLGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGL
Ga0157374_107575561	3300013296	Miscanthus Rhizosphere	MRELGKRTIKISIAVGAIVGLVGCGEQASDVETGTHDLGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGL
Ga0157374_123487841	3300013296	Miscanthus Rhizosphere	MRELGKRTIQISIALGAIAGLVGCGEQASDVETGTHELGLSSVNGLSSVNGLSSVNGL
Ga0157372_117228511	3300013307	Corn Rhizosphere	MKELGKRTIQISIAIGAIVGLIGCGEEASTVEPGTHDFSLAGVNGLAGVNGLASANGLAGVNGLAGVNGLA
Ga0182035_111704961	3300016341	Soil	VKETARRSIRISIAVGAVVGLIGCGDQNSTVESGGQDLGLSAANGLSGINGLSGVNGLSGVNGLSGVNGL
Ga0182035_113104581	3300016341	Soil	MKELGKRTIQISIALGAIVGLIGCGQEASTVESGTHDPGLSGINGLSGINGLSGANGLSGANGLSGVNGLSG
Ga0182034_103115402	3300016371	Soil	MRELGKRTIQVSVAIGALVGLIGCGEEASTVERGSHDFALSSMNGLSAI
Ga0163161_118999261	3300017792	Switchgrass Rhizosphere	MRELGKRTIQISIALGAIVGLIGCGEEAGNVETGTHDLGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNG
Ga0210396_105552481	3300021180	Soil	MKELGKRTIQISLALGAIVGLIGCGEQTSDVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLRS
Ga0210388_101996992	3300021181	Soil	MRELGTRTIRISIALGAIAGLVGCGEQASDVETGAHELGLSSINGLSSINGLSSINGLSSINGLSSINGL
Ga0210393_101246751	3300021401	Soil	MKTLGRRTIQISIGLGAIVGLIGCGEQASDVEGGGQDLGLSSINGLSSINGLSSINGLSSING
Ga0210393_102026571	3300021401	Soil	MKELGKRTIQISIALGAIVGLIGCGEQSSDVETGTHDLGLSSINGLSSINGLSSINGLSSIN
Ga0210385_114640931	3300021402	Soil	MKELGKRTIQISLALGAIVGLIGCGEQTSDVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGLMTNSGGR
Ga0210397_103175092	3300021403	Soil	MKTLGRRTIQISIGVGAIVGLIGCGEQASNVEEGSQDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSIN
Ga0210397_106452681	3300021403	Soil	MRELGKRTIQISIALGAIVGLIGCGEQSSDVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGL
Ga0210397_106609432	3300021403	Soil	MRELGKRTIQISIALGAIVGLIGCGEEASDVEAGTHDLGLSSINGLSSINGLSSINGLSSINGLS
Ga0210389_102707241	3300021404	Soil	MKELGKRTIQISIALGAIAGLIGCGEQGSDVETGTHEPGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGLS
Ga0210389_104747702	3300021404	Soil	MRELGKRTIQISIAFGAIVGLIGCGGDQASDIETGSHDLGLSSINGLSSINGLSSIN
Ga0210389_114328121	3300021404	Soil	MSAPEQRTIRISVAIGAIVGLIGCGEQASNVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSI
Ga0210387_102575351	3300021405	Soil	MKELGKRTIQISVALGAIVGLIGCGEQAGDVETGTHDLGLSSINGLSSINGLSSINGLSSING
Ga0210387_111639852	3300021405	Soil	VSNPSLVTKLVKRTIQISIALGAVAGLVGCGEQAGNVETGSHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSI
Ga0210387_118970441	3300021405	Soil	MRELGKRTIQISIALGAIVGLIGCGEEASDVEAGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINALSSINDLLSIN
Ga0210386_111508711	3300021406	Soil	MRELGKRTIQISIALGAIVGLIGCGEQSSDVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSIN
Ga0210391_101142362	3300021433	Soil	MKELGKRTIQISIALGAIVGLIGCGEQSSDVETGTHDLGLSSINGFSSINGLSSINGLSSINGLSSINGLSSINGLMTTSG
Ga0210391_103644881	3300021433	Soil	MKELGKRTIQISLALGAIVGLIGCGEQTSDVETGTHDLGLSSINGLSSINGLSSINGLSS
Ga0207928_10015371	3300025494	Arctic Peat Soil	MGNLGKRTIQISVALGAIIGLVGCSEEAGNVETSSHDFGLSSVNGLSSVNGLSSVNGLSSVNGLSSVNGLMTMAA
Ga0208219_10246574	3300025625	Arctic Peat Soil	MHSLGKRTIQVSIALGAIIGLVGCGEEASDVQSATGHEDFGLSSINGLSSINGLSSINGLSSINGLSSI
Ga0208220_11075072	3300025627	Arctic Peat Soil	MRQLGKRTIQISLALGAIVGLVGCGEEGGNVQTSSPEDYGLSSINGLSSIN
Ga0208480_10658982	3300025633	Arctic Peat Soil	METQASWMKRMGWIGLALGATVGLVGCGEEGSDVQASAEDFGLSSINGLSSINGLSSINGLSSINGLSSINGLALTNG
Ga0208480_10875412	3300025633	Arctic Peat Soil	MRQLGKRTIQISLALGAIVGLVGCGEEASNVQTSSPEDYGLSSINGLSSINGL
Ga0207692_107203201	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MRELGKRTIQISIALGAIAGLVGCGEQASDVETGSHDLGLSSINGLSSINGLSSINGLSSINGLSS
Ga0207705_112761861	3300025909	Corn Rhizosphere	MTDLGKRTLRISIGLGAIVGLVGCGEQASDVQSAGAHEDYGLSSINGLSSINGLSSINGLSSINGQ
Ga0207694_104681321	3300025924	Corn Rhizosphere	MRELGKRTIQISVALGAIVGLIGCGEEAANVEAGTHDLGLSSINGLSSIN
Ga0207700_117417161	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MRELGKRTIQISIAIGAIVGLIGCGEEASTVETGTHDFALAGVNGLAGINGLAGVNGLAGVNGLAGVNGLAGVN
Ga0207702_106361731	3300026078	Corn Rhizosphere	MRELGKRTIQISIAIGAIVGLIGCGEEASTVERPSHDFALSSMNGLSA
Ga0209863_100009548	3300026281	Prmafrost Soil	MRDLTKRTIQVSIALGAIVGLVGCGQEASDVQSAGHEDYGLSSINGLSSINGLSSINGL
Ga0209863_100016586	3300026281	Prmafrost Soil	MNALGKRTIQISIALGAIIGLVGCGEEASDVQTAGHEDYGLSSINGLSSINGLSSINGLSSING
Ga0209890_100010118	3300026291	Soil	MRELGKRTIQISIALGAIAGLVGCGEQAGNVETGTHDLGLSSINGLSSINGLSS
Ga0209890_101802592	3300026291	Soil	MKELGKRTIQISIALGAIVGLIGCGEQAGNVETGTHDLGLSSINGLSSINGLSS
Ga0209839_100977811	3300026294	Soil	MRELGKRTIQISIAIGAIVSLIGCGGDQTTDVETGTHDLGLSSINGLSSINGLSSIN
Ga0209839_102205962	3300026294	Soil	MRQLGKRTIQISIALGAIVGLIGCGQQAGDVETGTHDLGLSSINGLSSINGLSSINGLSS
Ga0209167_103221881	3300027867	Surface Soil	MKELGKRTIQISIALGAIVGLIGCGEQASEVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSS
Ga0209167_103458261	3300027867	Surface Soil	MKELGKRTIQISLALGAIVGLIGCGEEAGNVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSS
Ga0209579_106866321	3300027869	Surface Soil	MKELGKRTIQISIAIGAIVGLIGCGEQASDVETGTQDPGLSGINGLSGINGLSGINGLSGVN
Ga0265319_10608341	3300028563	Rhizosphere	MERIGKRTIQISIALGAIVGLVGCGEEASDVQASGHDFAESSMNGLSSINGLSSINGLSSMNG
Ga0265318_102186952	3300028577	Rhizosphere	LRELGKRTIQISIAVGAMVSLIGCGGDQSSDVETSSHDFALSSQNGLSALNGLSSLNGLSSFNGLS
Ga0265336_101731142	3300028666	Rhizosphere	MRELGKRTIQISLALGAMVGLIGCGEEASNVEAPSHELGLTAMNGLSSLNGLSALNGLSSLNGLS
Ga0302254_101210012	3300028870	Fen	MRELGKRTIQISVALGAIVGLVGCGEQAGNVETGTHDLGLSSINGLSS
Ga0308309_108750531	3300028906	Soil	MRNLGKRTIQIGIALGAIVGLVGCGQENSDVQAASHEDYGLSSINGLSSINGLSSINGLSSINGLSSI
Ga0308309_118548611	3300028906	Soil	MREAGKRTIQIGLALGAIAGLVGCGQENSDVQSAASHEDYGLSSINGLSSINGLSSIN
Ga0311347_108694601	3300029923	Fen	MRELGKRTIQISIALGAIVGLVGCGEQAGNVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGL
Ga0302298_101920562	3300029980	Fen	MKELGKRTIQISIALGAIVGLIGCGEQAGNVETGTHDLGLSSINGLSSINGL
Ga0311365_101999431	3300029989	Fen	MKELGKRTIQISIALGAIVGLIGCGEQAGNVETGTHDLGLSSINGLSSINGLSSINGLS
Ga0265332_104187771	3300031238	Rhizosphere	MRELGKRTIQISIALGAIVGLIGCGEEASDVEAGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGLS
Ga0265320_101832372	3300031240	Rhizosphere	MERIGKRTIQISIALGAIVGLVGCGEEASDVQASGHDFAESSMNGLSSINGLSSINGLSSMN
Ga0265340_100221753	3300031247	Rhizosphere	MKELGKRTIQISLALGAIVGLIGCGEETGNVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSING
Ga0265327_104943661	3300031251	Rhizosphere	MRELGKRTIQISIAFGAIVGLIGCGGDQTADIETTSHDFGLSSINGLSSINGL
Ga0311364_124090031	3300031521	Fen	MKELGKRTIQISIALGAIVGLIGCGEQAGNVETGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLS
Ga0265313_101169141	3300031595	Rhizosphere	MRDLGKRTIQISIALGAIVGLIGCGQEQSEAESSSHDFALSSVNGLSAINGLSSVNGLSAMN
Ga0265313_102124962	3300031595	Rhizosphere	MRDLGKRTIQISIALGAIVGLIGCGQEQSEAESSSHDFALSSVNGLSAINGLSSVNGLSAMNGLSA
Ga0265313_102616781	3300031595	Rhizosphere	MRQLGKRTIQIGFALGAIAGLVGCGEEASTVQTASPEDYGLSSINGLSSINGLSSINGLSSINGLSSINGLSSIN
Ga0265342_102991002	3300031712	Rhizosphere	MRDIGKRTIQISIALGAIVSLIGCGQEQSDAESSSHDFALSSVNGLSAINGLSSVNGLSAMNGLSA
Ga0302321_1015952231	3300031726	Fen	MRELGKRTIQISIALGAIVSLVGCGEQAGNVETGTHDLGLSSINGLSSIN
Ga0308174_106349711	3300031939	Soil	MRELGKRTIKISIAVGAIVGLVGCGEQASDVEATSHDLGMSSINGLSSINGLSSINGLSSINGLSSI
Ga0308174_116450521	3300031939	Soil	MKELGKRTIQISVALGAIVGLIGCGEEAGNVEDGTHDLGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGLSSINGL
Ga0308174_118841131	3300031939	Soil	MKELGKRTIQIGFALGAIVGLIGCGEEQSTVEAPSHEFGFSALNGLSALNGLSAL
Ga0308173_109049761	3300032074	Soil	MRELGKRTIQISVALGAIAGLVGCGEQASDVEESSHELGMSSINGLSSINGLSSING
Ga0335070_116075101	3300032829	Soil	MRELGKRAIQISFALGAIVSLTGCGEEASTVEPATHDPGLSAINGLSAINGLSAINGLSSLNGLSAING
Ga0335075_108476171	3300032896	Soil	MGDVGKRTIQISLALGAIVGLVGCGEQTSDVETSSHDFGLSSINGLSSINGLSSINGLSSINGLSSIN
Ga0335083_100082141	3300032954	Soil	MSGIGRRTIQISIGLGAIVGLVGCGTESSNVQTAGSHDVDYGLSSINGLSSINGLSSINGLSSINGLSSINGLMTTDGGRKTVS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092769

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences