Metagenome / Metatranscriptome Family F092663

Basic Information
Family ID	F092663
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	80 residues
Representative Sequence	MSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Number of Associated Samples	93
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	51.40 %
% of genes near scaffold ends (potentially truncated)	32.71 %
% of genes from short scaffolds (< 2000 bps)	80.37 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (66.355 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (18.692 % of family members)
Environment Ontology (ENVO)	Unclassified (27.103 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.682 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.54% β-sheet: 16.67% Coil/Unstructured: 71.79%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13410	GST_C_2	33.64
PF00765	Autoind_synth	4.67
PF00563	EAL	3.74
PF02656	DUF202	1.87
PF00106	adh_short	0.93
PF05050	Methyltransf_21	0.93
PF13518	HTH_28	0.93
PF00990	GGDEF	0.93
PF00378	ECH_1	0.93
PF07769	PsiF_repeat	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3916	N-acyl-homoserine lactone synthase LasI (autoinducer biosynthesis)	Signal transduction mechanisms [T]	9.35
COG2200	EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant)	Signal transduction mechanisms [T]	3.74
COG3434	c-di-GMP phosphodiesterase YuxH/PdeH, contains EAL and HDOD domains	Signal transduction mechanisms [T]	3.74
COG4943	Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains	Signal transduction mechanisms [T]	3.74
COG5001	Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain	Signal transduction mechanisms [T]	3.74
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	1.87

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
All Organisms	root	All Organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
cellular organisms	root	All Organisms → cellular organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.30 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.80 %
Lichenibacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae	1.87 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.80 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1.87 %
Kaistia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.80 %
Lichenibacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1.87 %
Kaistia hirudinis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia hirudinis	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_103568192	Not Available	535	Open in IMG/M
3300001546\|JGI12659J15293_10141349	Not Available	525	Open in IMG/M
3300002245\|JGIcombinedJ26739_100823948	Not Available	809	Open in IMG/M
3300003505\|JGIcombinedJ51221_10004889	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3985	Open in IMG/M
3300004092\|Ga0062389_102928451	Not Available	638	Open in IMG/M
3300005332\|Ga0066388_107944707	Not Available	531	Open in IMG/M
3300005335\|Ga0070666_10686376	Not Available	750	Open in IMG/M
3300005363\|Ga0008090_15593570	Not Available	533	Open in IMG/M
3300005435\|Ga0070714_100622192	Not Available	1038	Open in IMG/M
3300005544\|Ga0070686_101276271	Not Available	612	Open in IMG/M
3300005610\|Ga0070763_10165703	All Organisms → cellular organisms → Bacteria → Proteobacteria	1163	Open in IMG/M
3300005764\|Ga0066903_100315545	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2490	Open in IMG/M
3300005764\|Ga0066903_107587555	Not Available	559	Open in IMG/M
3300005921\|Ga0070766_11015483	Not Available	571	Open in IMG/M
3300006047\|Ga0075024_100568347	Not Available	605	Open in IMG/M
3300006050\|Ga0075028_100153090	Not Available	1219	Open in IMG/M
3300006059\|Ga0075017_100027259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3749	Open in IMG/M
3300006102\|Ga0075015_100134472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1274	Open in IMG/M
3300006172\|Ga0075018_10158887	Not Available	1048	Open in IMG/M
3300006176\|Ga0070765_100479089	Not Available	1168	Open in IMG/M
3300006176\|Ga0070765_100530836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1107	Open in IMG/M
3300006176\|Ga0070765_100843711	All Organisms → cellular organisms → Bacteria → Proteobacteria	866	Open in IMG/M
3300007982\|Ga0102924_1114737	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1322	Open in IMG/M
3300009101\|Ga0105247_11521925	Not Available	546	Open in IMG/M
3300009156\|Ga0111538_13857068	Not Available	519	Open in IMG/M
3300009522\|Ga0116218_1031535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2381	Open in IMG/M
3300009523\|Ga0116221_1308257	Not Available	685	Open in IMG/M
3300010359\|Ga0126376_10343519	Not Available	1319	Open in IMG/M
3300010371\|Ga0134125_12674924	Not Available	542	Open in IMG/M
3300010373\|Ga0134128_11118673	Not Available	869	Open in IMG/M
3300010376\|Ga0126381_103218705	Not Available	645	Open in IMG/M
3300010396\|Ga0134126_11622106	Not Available	711	Open in IMG/M
3300010398\|Ga0126383_10255613	Not Available	1722	Open in IMG/M
3300012177\|Ga0153943_1061197	Not Available	791	Open in IMG/M
3300012971\|Ga0126369_11790641	Not Available	703	Open in IMG/M
3300012985\|Ga0164308_10576685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Kaistia → Kaistia hirudinis	953	Open in IMG/M
3300013306\|Ga0163162_10170512	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2301	Open in IMG/M
3300015371\|Ga0132258_10855428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2295	Open in IMG/M
3300015373\|Ga0132257_101867750	Not Available	773	Open in IMG/M
3300015374\|Ga0132255_104297110	Not Available	604	Open in IMG/M
3300016341\|Ga0182035_10067928	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2494	Open in IMG/M
3300016357\|Ga0182032_10561344	Not Available	946	Open in IMG/M
3300017822\|Ga0187802_10182106	Not Available	806	Open in IMG/M
3300017823\|Ga0187818_10087135	Not Available	1348	Open in IMG/M
3300017933\|Ga0187801_10066130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1333	Open in IMG/M
3300017943\|Ga0187819_10030423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3181	Open in IMG/M
3300017943\|Ga0187819_10827330	Not Available	519	Open in IMG/M
3300017947\|Ga0187785_10788347	Not Available	504	Open in IMG/M
3300017955\|Ga0187817_10138793	Not Available	1543	Open in IMG/M
3300017955\|Ga0187817_10285391	Not Available	1052	Open in IMG/M
3300017970\|Ga0187783_10019375	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5025	Open in IMG/M
3300017970\|Ga0187783_10121296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1926	Open in IMG/M
3300017970\|Ga0187783_10425011	Not Available	965	Open in IMG/M
3300017972\|Ga0187781_10000054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	69986	Open in IMG/M
3300017972\|Ga0187781_10028886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3831	Open in IMG/M
3300017972\|Ga0187781_10576100	Not Available	810	Open in IMG/M
3300017973\|Ga0187780_10121930	All Organisms → cellular organisms → Bacteria	1802	Open in IMG/M
3300017974\|Ga0187777_10038517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3070	Open in IMG/M
3300017994\|Ga0187822_10223847	Not Available	636	Open in IMG/M
3300017995\|Ga0187816_10099720	Not Available	1246	Open in IMG/M
3300018006\|Ga0187804_10515069	Not Available	538	Open in IMG/M
3300018007\|Ga0187805_10084401	Not Available	1432	Open in IMG/M
3300018058\|Ga0187766_10069158	All Organisms → cellular organisms → Bacteria	2101	Open in IMG/M
3300018060\|Ga0187765_10778167	Not Available	636	Open in IMG/M
3300018085\|Ga0187772_11266484	Not Available	545	Open in IMG/M
3300018090\|Ga0187770_11672602	Not Available	520	Open in IMG/M
3300020579\|Ga0210407_10325487	Not Available	1201	Open in IMG/M
3300020581\|Ga0210399_10016511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5824	Open in IMG/M
3300020582\|Ga0210395_10452237	Not Available	966	Open in IMG/M
3300021171\|Ga0210405_10738809	Not Available	758	Open in IMG/M
3300021178\|Ga0210408_11206545	Not Available	578	Open in IMG/M
3300021180\|Ga0210396_10105556	All Organisms → cellular organisms → Bacteria → Proteobacteria	2547	Open in IMG/M
3300021406\|Ga0210386_10126020	All Organisms → cellular organisms → Bacteria → Proteobacteria	2122	Open in IMG/M
3300021406\|Ga0210386_11604542	Not Available	540	Open in IMG/M
3300021407\|Ga0210383_10338257	Not Available	1296	Open in IMG/M
3300021420\|Ga0210394_10287045	Not Available	1442	Open in IMG/M
3300021432\|Ga0210384_10672630	Not Available	927	Open in IMG/M
3300021477\|Ga0210398_10106270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2279	Open in IMG/M
3300021478\|Ga0210402_10994326	Not Available	766	Open in IMG/M
3300021478\|Ga0210402_11349534	Not Available	640	Open in IMG/M
3300027604\|Ga0208324_1154317	Not Available	624	Open in IMG/M
3300027894\|Ga0209068_10114075	All Organisms → cellular organisms → Bacteria → Proteobacteria	1437	Open in IMG/M
3300027895\|Ga0209624_10046025	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2788	Open in IMG/M
3300027895\|Ga0209624_10436983	Not Available	872	Open in IMG/M
3300027908\|Ga0209006_10002666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	16246	Open in IMG/M
3300027908\|Ga0209006_10177338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1860	Open in IMG/M
3300027915\|Ga0209069_10678260	Not Available	603	Open in IMG/M
3300028906\|Ga0308309_10537708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Lichenibacteriaceae → Lichenibacterium	1012	Open in IMG/M
3300030494\|Ga0310037_10083506	All Organisms → cellular organisms → Bacteria	1493	Open in IMG/M
3300031545\|Ga0318541_10735001	Not Available	551	Open in IMG/M
3300031708\|Ga0310686_106727598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1352	Open in IMG/M
3300031715\|Ga0307476_11070570	Not Available	593	Open in IMG/M
3300031718\|Ga0307474_10261334	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1328	Open in IMG/M
3300031744\|Ga0306918_10532958	Not Available	920	Open in IMG/M
3300031747\|Ga0318502_10779601	Not Available	579	Open in IMG/M
3300031768\|Ga0318509_10261149	Not Available	968	Open in IMG/M
3300031782\|Ga0318552_10671897	Not Available	528	Open in IMG/M
3300031798\|Ga0318523_10433689	Not Available	652	Open in IMG/M
3300031823\|Ga0307478_10798998	Not Available	790	Open in IMG/M
3300031890\|Ga0306925_10872515	Not Available	928	Open in IMG/M
3300031890\|Ga0306925_11243108	Not Available	744	Open in IMG/M
3300031910\|Ga0306923_11532249	Not Available	696	Open in IMG/M
3300031912\|Ga0306921_11392801	Not Available	771	Open in IMG/M
3300031946\|Ga0310910_11171706	Not Available	597	Open in IMG/M
3300032805\|Ga0335078_10339052	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2002	Open in IMG/M
3300032893\|Ga0335069_12775927	Not Available	502	Open in IMG/M
3300032898\|Ga0335072_10038109	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6601	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.52%
Host-Associated	Host-Associated	7.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	73.83%
Aquatic	Environmental → Aquatic	18.69%
Plants	Host-Associated → Plants	6.54%
Fungi	Host-Associated → Fungi	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.83%
Freshwater	Environmental → Aquatic → Freshwater	11.21%
Sediment	Environmental → Aquatic → Sediment	6.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.80%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.93%
Mycelium	Host-Associated → Fungi → Mycelium	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	42.06%
Loam	Environmental → Terrestrial → Soil → Loam	16.82%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.95%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.21%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.87%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.93%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.04%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	14.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.15%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	10.28%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	18.69%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	12.15%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	10.28%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	6.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	6.54%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.74%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1035681922	3300000364	Soil	MSHARLLTDRPERGKPLRAQPVACPGCGARFAFCRSDHPAIDACGFESYSFICKECGASLSGVVDPLDDTLLITELTA*
JGI12659J15293_101413491	3300001546	Forest Soil	MNRSRVIRDRPEPAKPHGGQLVTCPRCAASFAFSRSAHPAIDASGFESYTFACEECGVSLSGIIDPLDDALLITEVA*
JGIcombinedJ26739_1008239481	3300002245	Forest Soil	MSHYRIRAEPGKPYRAQSVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA*
JGIcombinedJ51221_100048893	3300003505	Forest Soil	MSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPXDDALLITEXAA*
Ga0062389_1029284512	3300004092	Bog Forest Soil	MSHYRIIPDRAEPGKPYRAQPVACPCCGAHFAFCRSENPVIDACGFESYTFACKECGATLSGIVDPFDNALLITEMAA*
Ga0066388_1079447071	3300005332	Tropical Forest Soil	MSHARLLTDRPERGKPLRAQPVACPGCGARFAFCRSDHPAIDACGFESYSFICKECGASLSGVVDPLDDTLLVTELTA*
Ga0070666_106863761	3300005335	Switchgrass Rhizosphere	MSHYRVVAERAKAAKPYRAQPVVCPGCGAHLAFCRTEHPSIDACGFESYTFACEECGASLSGIVDPLDDVLLVTETAA*
Ga0008090_155935702	3300005363	Tropical Rainforest Soil	MSHYRIIPDRAEPGKPYRAQPVACPGCGAHFTFCRSEHPFIDACGFESYTFACKECGAALSGIVDPFDDALLITATAA*
Ga0070714_1006221921	3300005435	Agricultural Soil	MSHARLLTDRPERGKPLRTQPVACPGCGARFAFCRSDHPAIDACGFESYSFICKECGASLSGVVDPLDDTLLITELTA*
Ga0070686_1012762711	3300005544	Switchgrass Rhizosphere	AKAAKPYRAQPVVCPGCGAHLAFCRTEHPSIDACGFESYTFACEECGASLSGIVDPLDDVLLVTETAA*
Ga0070763_101657031	3300005610	Soil	SEFAAERFSQLADTSMSHYRIIPDRAEPGKPYRAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECEASLSGIVDPFDDALLITEMAA*
Ga0066903_1003155453	3300005764	Tropical Forest Soil	MSHYRIIPGRAEPGKPYRAQPVACPGCGAHFTFCRSEHPFIDACGFESYTFACKECGAALSGIVDPFDDALLITAMAT*
Ga0066903_1075875551	3300005764	Tropical Forest Soil	MSHYRVIAERAEPAKPYRAQPVVCPGCGAHFAFSRTEHPSIDACGFESYTFACEECGASLSGIVDPLDDVLLVT
Ga0070766_110154832	3300005921	Soil	MSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA*
Ga0075024_1005683471	3300006047	Watersheds	MSHYRIIPDRAEPGKPYRAQPVACPGCGAGFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDN
Ga0075028_1001530902	3300006050	Watersheds	MSHYRIIPDRAEPGKPYRAQPVACPCCGAHFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA*
Ga0075017_1000272593	3300006059	Watersheds	MSHYRIIPDRPEPGKPYRAQPVACPFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDN
Ga0075015_1001344722	3300006102	Watersheds	MSHYRIISDRAEPGKPYRAQPVACPCCGAHFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA*
Ga0075018_101588871	3300006172	Watersheds	GKPYRAQPVACPGCGAHFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA*
Ga0070765_1004790892	3300006176	Soil	SHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA*
Ga0070765_1005308361	3300006176	Soil	MNRSRVIRDRPEPAKPHGGQLVTCPRCAASFAFSRSAHPAIDASGFESYTFACEECGVSLSGIIDPLD
Ga0070765_1008437111	3300006176	Soil	MSHYRIIPDRAEPGKPYRAQPVACPGCGAGFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA*
Ga0102924_11147372	3300007982	Iron-Sulfur Acid Spring	MSHYRTIQSRDEPNAALRAQPAACPGCGARFAFCRSEHPFIDACGFESYTFACKECGASLSGIVDPFDDALLITETAA*
Ga0105247_115219252	3300009101	Switchgrass Rhizosphere	LMTGQPESDKPLRAQPVACPGCGAHFAFCRSEHPAIDACGFENYSFICKECGASLSGIVDPLDDVLLVTETAA*
Ga0111538_138570681	3300009156	Populus Rhizosphere	GARLTTSPRKFAAEKFSAIGEASMSHYRVVAERAKAAKPYRAQPVVCPGCGAHLAFCRTEHPSIDACGFESYTFACEECGASLSGIVDPLDDVLLVTETAA*
Ga0116218_10315352	3300009522	Peatlands Soil	MLRAIGDVDMSHYRIIQDRDEPNRPLGAQAAACPRCGAHFVFCRSAYPFIDACGLESYTLACQECGASLSGIVDPFDDTVLISEVAA*
Ga0116221_13082572	3300009523	Peatlands Soil	MLRATGDVDMSHYRIIQDRDEPNRPLGAQAAACPRCGAHFVFCRSAYPFIDACGLESYTLACQECGASLSGIVDPFDDTVLISEVAA*
Ga0126376_103435191	3300010359	Tropical Forest Soil	EPGKPYRAQPVACPGCGAHFTFCRSEHPFIDACGFESYTFACKECGAALSGIVDPFDDALLITATAA*
Ga0134125_126749242	3300010371	Terrestrial Soil	MSHARLMTGQPESGKPLRAQPVACPGCGAHFAFCRSEHPAIDACGFENYSFICKECGASLSGIVDPLDDTLLITELTD*
Ga0134128_111186731	3300010373	Terrestrial Soil	MSHARLLTDRPERGKPLRTQPVACPGCGARFAFCRSDHPAIDACGFESYSFICKECGASLSGVVDPLDDTLLVTELTA*
Ga0126381_1032187051	3300010376	Tropical Forest Soil	MSHYRIIPDRAEPGKPYRAQPVACPGCGARFAFCRSDHPAIDACGFESYRFICKECGASLSGVVDPLDDTLLVTELTA*
Ga0134126_116221062	3300010396	Terrestrial Soil	MSHAQLLTDRPERGKPLRAQPVACPGCGARFAFCRSEPPAIDACGFESYSFICKECGSSLSGVVDPLDDTLLITELTA*
Ga0126383_102556131	3300010398	Tropical Forest Soil	MSHYRIIPGRAEPGKPYRAQPVACPGCGAHFTFCRSEHPVIDACGFESYTFACKECGAALSGIVDPFDDALLITAMAT*
Ga0153943_10611971	3300012177	Attine Ant Fungus Gardens	MSHSRIIPGRPEPGKPFRAQPVACPSCAARFTFCRSENPAIDACGFESYTFARKECGASLSGIVDPLDDALLITESTA*
Ga0126369_117906412	3300012971	Tropical Forest Soil	MSHARLLTDRPERSKPLRAQPVACPGCGARFAFCRSDHPAIDACGFESYSFICKECGASLSGVVDPLDDTLLVTELTA*
Ga0164308_105766851	3300012985	Soil	MSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPF
Ga0163162_101705122	3300013306	Switchgrass Rhizosphere	MFPGARLTTSPRKFAAEKFSAIGEASMSHYRVVAERAKAAKPYRAQPVVCPGCGAHLAFCRTEHPSIDACGFESYTFACEECGASLSGIVDPLDDVLLVTETAA*
Ga0132258_108554282	3300015371	Arabidopsis Rhizosphere	MSHAQLLTDRPERGKPLRAQPVACPGCGARFAFCRSEPPAIDACGFESYSFICKECGASLSGVVDPLDDTLLITELTA*
Ga0132257_1018677502	3300015373	Arabidopsis Rhizosphere	VQIATFLRAQPVACPGCGARFAFCRSEPPAIDACGFESYSFICKECGASLSGVVDPLDDTLLITELTA*
Ga0132255_1042971101	3300015374	Arabidopsis Rhizosphere	MSHARLLTDRPERGKPLRAQPVACPGCGARFAFCRSDHPAIDACGLESYSFICKECGASLSGVVDPLDDTLLITELTA*
Ga0182035_100679282	3300016341	Soil	MSHYRIIPGRAEPGKPYRAQSVACPGCGAHFTFCRSEDHVIDACGFESYTFACKECGAALSGIVDPFDDAFLITAMAA
Ga0182032_105613442	3300016357	Soil	MSHYRIIPGRAEPGQPYRAQSVACPGCGVHFPFCRSEDPFIDACGFESYTFACKECGAALSGIVDPFDDALLITEMAA
Ga0187802_101821061	3300017822	Freshwater Sediment	MLRATGDVDMSHYRIIQDRDEPNRPLGAQAAACPRCGAHFVFCRSAYPFIDACGLESYTLACQECGASLSGIVDPFDDTVLISEVAA
Ga0187818_100871352	3300017823	Freshwater Sediment	MSHYRIIPDRAEPGKPYRAQPVACPGCGAHFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0187801_100661302	3300017933	Freshwater Sediment	MSHYRIIPDRSEPSKPYRAQPVACPGCGARFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0187819_100304232	3300017943	Freshwater Sediment	MLRATGDVDMSHYRIIQDRDEPNRPLGAQAAACPRCGAHFVLCRSAYPFIDACGLESYTLACQECGASLSGIVDPFDDTVLISEVAA
Ga0187819_108273301	3300017943	Freshwater Sediment	MSHYRIIPDRAEPGKPYRAQPVACPCCGAHFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDDALLITELAA
Ga0187785_107883471	3300017947	Tropical Peatland	MSHARLMTGQPESGKPLRAQPVACPGCGAHFAFCRSEHPAIDACGFESYSFICKECGASLSGIVDPFDDTLLITELTA
Ga0187817_101387932	3300017955	Freshwater Sediment	MSHYRTIQSRDEPNAALRAQPAACPGCGARFAFCRSEHPFIDACGFESYTFACKECGASLSGIVDPFDDALLITETAA
Ga0187817_102853911	3300017955	Freshwater Sediment	MLRATGDVDMSHYRIIQDRDEPNRPLGAQAAACPRCGAHFVLCRSAYPFIDACGLESYILACQECGASLSGIVDPFDDTVLISEVAA
Ga0187783_100193753	3300017970	Tropical Peatland	MSHSRVIPDRAEPGQPYSAQTVACPGCGARFVFCRSEHPFIDASGFETYTFACEECGASLSGVVDPFDDVLLITKMAA
Ga0187783_101212961	3300017970	Tropical Peatland	MSHSRVIPDRAEPGQPYKAQAVTCPGCGARLVFCRSEHPFIDASGFESYTFACEECGASLSGVVDPFDDALLITKMAA
Ga0187783_104250111	3300017970	Tropical Peatland	ERSRGPERESDASMSHSRIIPGRPQPGKPFRAQPVAFPSCAARFTFCRSENPAIDACGFESYAFACKECGACLSGIVDPLDDALLITESTA
Ga0187781_100000542	3300017972	Tropical Peatland	MSHSRVIPDRAEPGQPYSAQTVACPGCGARFVFCRSEHPFIDASGFESYTFACEECGASLSGVVDPFDDVLLITKMAA
Ga0187781_100288863	3300017972	Tropical Peatland	MSHSRIIPGRPEPGKPFRAQPVACPSCGARFTFCRSENPAIDACGFESYTFACKECGASLSGIVDPLDDALLITELTA
Ga0187781_105761001	3300017972	Tropical Peatland	MSHSRIIPGRTEPGKPFRAQPVACPSCGARFTFCRSENPTIDACGFESYTFACKECGASLCGIVDPLDDALLITESTA
Ga0187780_101219301	3300017973	Tropical Peatland	MRFDVTGSTTMSHSRVVPDRTEPDQPYSAQTVTCPGCGAHLVFCRSEHPFIDASGFESYTFACDECGASLSGVIDPFDDVLLITKSS
Ga0187777_100385172	3300017974	Tropical Peatland	MRFDVTGSTTMSHSRVVPDRTEPDQPYSAQTVTCPGCGAHLVFCRSEHPFIDASGFESYTFACEECGASLSGVIDPFDDVLLITKSS
Ga0187822_102238472	3300017994	Freshwater Sediment	MSHYRIIPDRAEPGKPYRAQPVACPGCGAGFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0187816_100997202	3300017995	Freshwater Sediment	MSHYRIIPDRAEPGKPYCAQPVACPGCGAGFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0187804_105150691	3300018006	Freshwater Sediment	EKFSQLADTSMSHYRIIPDRAEPGKPYRAQPVACPGCGAHIAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0187805_100844012	3300018007	Freshwater Sediment	MSHYQIIPDRAESGKPYRAQPVACPGCGARFAFCRSEQPFIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0187766_100691582	3300018058	Tropical Peatland	MRFDVTGSTTMSHSRVVPDRTEPDQPYSAQTVTCPGCGAHLVFCRSEHPFIDASGFESYTFACEECGTSLSGVIDPFDDVLLITKSS
Ga0187765_107781672	3300018060	Tropical Peatland	MTGQPESGKPLRAQPVACPGCGAHFAFCRSEHPAIDACGFESYSFICKECGASLSGIVDPLDDTLLITVN
Ga0187772_112664842	3300018085	Tropical Peatland	MSHSRVVPDRTEPDQPYSAQTVTCPGCGAHLVFCRSEHPFIDASGFESYTFACEECGASLSGVIDPFDDVLLITKSS
Ga0187770_116726021	3300018090	Tropical Peatland	MSHSRVVPDRTEPDQPYSAQTVTCPGCGAHLVFCRSEHPFIDASGFESYTFACEECGASLSGVIDPFDDVLL
Ga0210407_103254872	3300020579	Soil	ANISKRSLNEFTSEFAAERFSQLADTSMSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0210399_100165114	3300020581	Soil	MSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0210395_104522372	3300020582	Soil	MNRSRVIRDRPEPAKPHGGQLVTCPRCAASFAFSRSAHPAIDASGFESYTFACEECGVSLSGIIDPLDDALLITEVAA
Ga0210405_107388092	3300021171	Soil	VKCEQSISANISKRSLNEFTSEFAAERFSQLADTSMSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0210408_112065452	3300021178	Soil	RGPERESDASMSYSRIIPGRPEPGKPFRAQPVACPSCCARFTFCRSENPAIDACGFESYTFACKECGASLSGIVDPLDDALLITESTA
Ga0210396_101055563	3300021180	Soil	MSHYRIRAEPGKPYRAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0210386_101260204	3300021406	Soil	AVERFSQLADTSMSHYRIRAEPGKPYRAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0210386_116045421	3300021406	Soil	MSYSRIIPGRPEPGKPFRAQPVACPSCGARFTFCRSENPAIDACGFESYTFACKECGASLSGIVDPFDNALLI
Ga0210383_103382572	3300021407	Soil	MSYSRIIPGRPEPGKPFRAQPVACPSCCARFTFCRSENPAIDACGFESYTFACKECGASLSGIVDPLDDALLITESTA
Ga0210394_102870452	3300021420	Soil	AAERFSQLADTSMSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0210384_106726302	3300021432	Soil	NEFTSEFAAERFSQLADTSMSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0210398_101062701	3300021477	Soil	MNRSRVIRDRPEPAKPPGGQLVTCPRCAASFAFSRSAHPAIDASGFESYTFACEECGVSLSGIIDPLDDALLITEVAA
Ga0210402_109943262	3300021478	Soil	MSHYRIIPDRAEPGKPYRAQPVACPCCGAHFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0210402_113495342	3300021478	Soil	AERFSQLADTSMSHYRIIPDRAEPGKPYCAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0208324_11543171	3300027604	Peatlands Soil	MLRAIGDVDMSHYRIIQDRDEPNRPLGAQAAACPRCGAHFVFCRSAYPFIDACGLESYTLACQECGASLSGIVDPFDDTVLISEVAA
Ga0209068_101140752	3300027894	Watersheds	MSHYRIIPDRAEPGKPYRAQPVACPCCGAHFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITE
Ga0209624_100460253	3300027895	Forest Soil	MNRSRVIRDRPEPAKPHGGQLVTCPRCAASFAFSRSAHPAIDASGFESYTFACEECGVSLSGIIDPLDDALLITEVA
Ga0209624_104369831	3300027895	Forest Soil	SANISKRSLNEFTSEFAAERFSQLADTSMSHYRIRAEPGKPYRAQPVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDDALLITEMAA
Ga0209006_1000266615	3300027908	Forest Soil	LLEFSAIGNASMNRSRVIRDRPEPAKPHGGQLVTCPRCAASFAFSRSAHPAIDASGFESYTFACEECGVSLSGIIDPLDDALLITEVA
Ga0209006_101773382	3300027908	Forest Soil	MSHYRIRAEPGKPYRAQSVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0209069_106782601	3300027915	Watersheds	MSHYRIIPDRAEPGKPYRAQPVACPGCGAGFAFCRSENPVIDACGFESYTFACKECGASLSGIVDPFD
Ga0308309_105377082	3300028906	Soil	MNRSRVIRDRPEPAKPHGGQLVTCPRCAASFAFSRSAHPAIDASGFESYTFACEECGVSLSGIIDPLDDAL
Ga0310037_100835061	3300030494	Peatlands Soil	MLRAIGDVDMSHYRIIQDRDEPNRPLGAQAAACPRCGAHFVFCRSAYPFIDACGLESYTLACQECGASLSGIVD
Ga0318541_107350012	3300031545	Soil	TVCRAEPGKPYRAQSVACPGCGAHFTFCRSEDHVIDACGFESYTFACKECGAALSGIVDPFDDALLITEMAA
Ga0310686_1067275982	3300031708	Soil	MSHYRIIPDRAEPGKPYRAQPVACPCCGAHFAFCRSENPVIDACGFESYTFACKECGATLSGIVDPFDNALLITEMAA
Ga0307476_110705701	3300031715	Hardwood Forest Soil	MSHYRIRAEPGKPYRAQSVACPGCGARFAFCRSEHPVIDACGFESYTFACKECGASLSGIVDPFDD
Ga0307474_102613342	3300031718	Hardwood Forest Soil	MSHYRIIPDRAEPGKPYRAQPVACPCCGAHFAYCRSENPVIDACGFESYTFACKECGASLSGIVDPFDNALLITEMAA
Ga0306918_105329581	3300031744	Soil	MSHSRIIPGRPEPGKPFRAQPVACPSCAARFTFCRSENPAIDASGFESYTFACKECGACLSGIVDPLDDALLITESTA
Ga0318502_107796012	3300031747	Soil	MSHYRIIPGRAEPGKPYRAQSVACPGCGAHFTFCRSEDHVIDACGFESYTFACKECGAALSGIVDPFDDALLITEMAA
Ga0318509_102611491	3300031768	Soil	SKRSLNEFPSEYAAGKFSAIGDASMSHYRIIPGRAEPGKPYRAQSVACPGCGAHFTFCRSEDHVIDACGFESYTFACKECGAALSGIVDPFDDALLITEMAA
Ga0318552_106718971	3300031782	Soil	FSAIGDASMSHYRIIPGRAEPGKPYRAQSVACPGCGAHFTFCRSEDHVIDACGFESYTFACKECGAALSGIVDPFDDALLITEMAA
Ga0318523_104336892	3300031798	Soil	MSHYRIIPGRAEPGKPYRAQSVACPGCGVHFTFCRSEDPFIDACGFESYTFACKECGAALSGIVDPFDDALLITEMAA
Ga0307478_107989981	3300031823	Hardwood Forest Soil	MSYSRIIPGRPEPGKPFRAQPVACPSCGARFTFCRSENPAIDACGFESYTFARKECGASLSGIVDPLDDALLITESTA
Ga0306925_108725151	3300031890	Soil	PSGGLERPRGPERESDASMSHSRIIPGRPEPGKPFRAQPVACPSCAARFTFCRSENPAIDACGFESYTFACKECGACLSGIVDPLDDALLITESTA
Ga0306925_112431082	3300031890	Soil	MRFDVTGSTTMSHSRVVPDRTEPDQPYNAQTVTCPGCGAHLVFCRSEHPFIDASGFESYTFACEECGASLSGVIDPFDDVLLITKSS
Ga0306923_115322492	3300031910	Soil	MRFDVTGSTTMSHSRVFPDRTEPDQPYNAQTVTCPGCGAHLVFCRSEHPFIDASGFESYTFACEECGASLSGVIDPFDDVLLITKSS
Ga0306921_113928012	3300031912	Soil	MSHYRIIPGRAEPGKPYRAQSVACPGCGVHFTFCRSEDHVIDACGFESYTFACKECGAALSGIVDPFDDALLITEMAA
Ga0310910_111717061	3300031946	Soil	MSHSRIIPGRPEPGKPFRAQPVACPSCAARFTFCRSENPAIDACGFESYTFACKECGACLSGIVDPLDDALLITESTA
Ga0335078_103390522	3300032805	Soil	MSHARLLTDRPERGKPLRAQPVACPGCGARFAFCRSEHPAIDACGFESYSFICKECGASLSGVVDPLDDTLLVTELTA
Ga0335069_127759272	3300032893	Soil	LNRWPERDSPLPAQPVACPGCGARFAFCRSRHPAIDACGFESYSFTCDECGASLSGIVDPLDDTLLITKVTA
Ga0335072_100381096	3300032898	Soil	MPLPDSALLELSALGNASMNRSRVIPDRPKPAKPYGGQLVTCPRCAARFGFSRSPHPAIDASGFESYAFACGECGASLSGIVDPLDDALLITEVAA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092663

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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