Metagenome Family F092639

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092639
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	44 residues
Representative Sequence	HPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Number of Associated Samples	99
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (89.720 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds (12.149 % of family members)
Environment Ontology (ENVO)	Unclassified (21.495 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (39.252 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 17.39% Coil/Unstructured: 82.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF01887	SAM_HAT_N	51.40
PF12704	MacB_PCD	17.76
PF11138	DUF2911	2.80
PF12732	YtxH	2.80
PF14559	TPR_19	1.87
PF13349	DUF4097	1.87
PF14526	Cass2	0.93
PF00551	Formyl_trans_N	0.93
PF00441	Acyl-CoA_dh_1	0.93
PF01491	Frataxin_Cyay	0.93
PF01979	Amidohydro_1	0.93
PF01980	TrmO	0.93
PF00326	Peptidase_S9	0.93
PF12867	DinB_2	0.93
PF16576	HlyD_D23	0.93
PF01636	APH	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1912	Stereoselective (R,S)-S-adenosylmethionine hydrolase (adenosine-forming)	Defense mechanisms [V]	51.40
COG1720	tRNA (Thr-GGU) A37 N6-methylase	Translation, ribosomal structure and biogenesis [J]	0.93
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.93
COG1965	Fe-S cluster assembly protein CyaY, frataxin homolog	Inorganic ion transport and metabolism [P]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	89.72 %
Unclassified	root	N/A	10.28 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	82.24 %
Unclassified	root	N/A	10.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	29.91 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	22.43 %
Unclassified	root	N/A	10.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.91 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	21.50 %
Unclassified	root	N/A	10.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.93 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.91 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	21.50 %
Unclassified	root	N/A	10.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	0.93 %
unclassified Bryobacterales	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.91 %
Unclassified	root	N/A	10.28 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	9.35 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	0.93 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	29.91 %
Unclassified	root	N/A	10.28 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.93 %
Bryobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001137\|JGI12637J13337_1013725	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	697	Open in IMG/M
3300002560\|JGI25383J37093_10114462	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	769	Open in IMG/M
3300003505\|JGIcombinedJ51221_10272967	Not Available	688	Open in IMG/M
3300004080\|Ga0062385_10101261	Not Available	1394	Open in IMG/M
3300004092\|Ga0062389_104531595	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	523	Open in IMG/M
3300005435\|Ga0070714_100225940	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1723	Open in IMG/M
3300005568\|Ga0066703_10699597	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	583	Open in IMG/M
3300005575\|Ga0066702_10044903	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	2348	Open in IMG/M
3300006050\|Ga0075028_100674061	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	620	Open in IMG/M
3300006052\|Ga0075029_100307287	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1013	Open in IMG/M
3300006052\|Ga0075029_100624256	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	722	Open in IMG/M
3300006057\|Ga0075026_100548111	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	672	Open in IMG/M
3300006059\|Ga0075017_100512767	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	910	Open in IMG/M
3300006086\|Ga0075019_10662919	All Organisms → cellular organisms → Bacteria	658	Open in IMG/M
3300006102\|Ga0075015_100050168	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1972	Open in IMG/M
3300006162\|Ga0075030_100527399	All Organisms → cellular organisms → Bacteria → Acidobacteria	938	Open in IMG/M
3300006172\|Ga0075018_10845736	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	505	Open in IMG/M
3300006174\|Ga0075014_100644244	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300006176\|Ga0070765_101072954	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	761	Open in IMG/M
3300006354\|Ga0075021_10288507	Not Available	1015	Open in IMG/M
3300006871\|Ga0075434_100602442	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1118	Open in IMG/M
3300009520\|Ga0116214_1392789	Not Available	541	Open in IMG/M
3300009522\|Ga0116218_1520367	Not Available	530	Open in IMG/M
3300009628\|Ga0116125_1014500	All Organisms → cellular organisms → Bacteria → Acidobacteria	1968	Open in IMG/M
3300009631\|Ga0116115_1161941	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300009635\|Ga0116117_1108727	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300009764\|Ga0116134_1195141	All Organisms → cellular organisms → Bacteria → Proteobacteria	705	Open in IMG/M
3300009764\|Ga0116134_1197884	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	700	Open in IMG/M
3300010047\|Ga0126382_10368240	All Organisms → cellular organisms → Bacteria → Acidobacteria	1108	Open in IMG/M
3300010048\|Ga0126373_10063846	All Organisms → cellular organisms → Bacteria → Acidobacteria	3307	Open in IMG/M
3300010339\|Ga0074046_10030505	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → unclassified Bryobacterales → Bryobacterales bacterium	3683	Open in IMG/M
3300010341\|Ga0074045_10029272	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4181	Open in IMG/M
3300010341\|Ga0074045_10693427	Not Available	647	Open in IMG/M
3300010343\|Ga0074044_10679488	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	672	Open in IMG/M
3300012200\|Ga0137382_10572282	All Organisms → cellular organisms → Bacteria → Acidobacteria	806	Open in IMG/M
3300012203\|Ga0137399_10394251	All Organisms → cellular organisms → Bacteria → Acidobacteria	1154	Open in IMG/M
3300012363\|Ga0137390_11393211	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	645	Open in IMG/M
3300012363\|Ga0137390_11716957	All Organisms → cellular organisms → Bacteria → Acidobacteria	562	Open in IMG/M
3300012685\|Ga0137397_10650112	All Organisms → cellular organisms → Bacteria → Acidobacteria	784	Open in IMG/M
3300012924\|Ga0137413_11385838	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	567	Open in IMG/M
3300012927\|Ga0137416_11423369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	628	Open in IMG/M
3300012986\|Ga0164304_11299756	All Organisms → cellular organisms → Bacteria → Acidobacteria	592	Open in IMG/M
3300014155\|Ga0181524_10305887	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300014158\|Ga0181521_10272184	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	883	Open in IMG/M
3300014159\|Ga0181530_10209744	All Organisms → cellular organisms → Bacteria → Acidobacteria	1066	Open in IMG/M
3300014159\|Ga0181530_10355040	Not Available	755	Open in IMG/M
3300014165\|Ga0181523_10354847	Not Available	821	Open in IMG/M
3300014199\|Ga0181535_10786975	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	539	Open in IMG/M
3300014495\|Ga0182015_10275319	All Organisms → cellular organisms → Bacteria → Acidobacteria	1106	Open in IMG/M
3300015242\|Ga0137412_10625591	All Organisms → cellular organisms → Bacteria → Acidobacteria	811	Open in IMG/M
3300015242\|Ga0137412_11017370	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	592	Open in IMG/M
3300015264\|Ga0137403_10153007	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2271	Open in IMG/M
3300015371\|Ga0132258_11521200	All Organisms → cellular organisms → Bacteria	1690	Open in IMG/M
3300017933\|Ga0187801_10194783	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	801	Open in IMG/M
3300017955\|Ga0187817_10792675	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	605	Open in IMG/M
3300017994\|Ga0187822_10045692	All Organisms → cellular organisms → Bacteria → Acidobacteria	1218	Open in IMG/M
3300018019\|Ga0187874_10215985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	793	Open in IMG/M
3300018025\|Ga0187885_10471479	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	560	Open in IMG/M
3300018034\|Ga0187863_10081255	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300018058\|Ga0187766_10158570	Not Available	1409	Open in IMG/M
3300018064\|Ga0187773_10026214	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	2538	Open in IMG/M
3300018090\|Ga0187770_11285079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	593	Open in IMG/M
3300019785\|Ga0182022_1232634	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1714	Open in IMG/M
3300019787\|Ga0182031_1472345	All Organisms → cellular organisms → Bacteria → Acidobacteria	2008	Open in IMG/M
3300020006\|Ga0193735_1090682	All Organisms → cellular organisms → Bacteria → Acidobacteria	863	Open in IMG/M
3300020580\|Ga0210403_10487397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1002	Open in IMG/M
3300020581\|Ga0210399_11438898	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	537	Open in IMG/M
3300021474\|Ga0210390_10466047	All Organisms → cellular organisms → Bacteria → Acidobacteria	1066	Open in IMG/M
3300025439\|Ga0208323_1052503	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300025453\|Ga0208455_1007025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	2925	Open in IMG/M
3300025507\|Ga0208188_1003089	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	6459	Open in IMG/M
3300025509\|Ga0208848_1034626	All Organisms → cellular organisms → Bacteria → Acidobacteria	1095	Open in IMG/M
3300026322\|Ga0209687_1024800	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	1959	Open in IMG/M
3300026376\|Ga0257167_1070390	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	548	Open in IMG/M
3300026480\|Ga0257177_1002253	All Organisms → cellular organisms → Bacteria → Acidobacteria	2049	Open in IMG/M
3300026529\|Ga0209806_1268203	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	574	Open in IMG/M
3300026542\|Ga0209805_1429699	All Organisms → cellular organisms → Bacteria → Acidobacteria	512	Open in IMG/M
3300027034\|Ga0209730_1002385	Not Available	1430	Open in IMG/M
3300027643\|Ga0209076_1018585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1873	Open in IMG/M
3300027643\|Ga0209076_1044754	All Organisms → cellular organisms → Bacteria → Acidobacteria	1249	Open in IMG/M
3300027645\|Ga0209117_1192236	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300027767\|Ga0209655_10266517	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	556	Open in IMG/M
3300027911\|Ga0209698_10655698	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	802	Open in IMG/M
3300027915\|Ga0209069_10831193	Not Available	554	Open in IMG/M
3300028552\|Ga0302149_1079660	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	843	Open in IMG/M
3300028762\|Ga0302202_10549170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300028788\|Ga0302189_10059582	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300028906\|Ga0308309_11110421	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	683	Open in IMG/M
3300029911\|Ga0311361_10522178	All Organisms → cellular organisms → Bacteria → Acidobacteria	1171	Open in IMG/M
3300029990\|Ga0311336_11903654	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300030399\|Ga0311353_10225835	All Organisms → cellular organisms → Bacteria → Acidobacteria	1747	Open in IMG/M
3300030503\|Ga0311370_11506492	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	703	Open in IMG/M
3300031122\|Ga0170822_11084750	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	819	Open in IMG/M
3300031233\|Ga0302307_10606155	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	552	Open in IMG/M
3300031679\|Ga0318561_10090810	All Organisms → cellular organisms → Bacteria → Acidobacteria	1594	Open in IMG/M
3300031708\|Ga0310686_104379090	All Organisms → cellular organisms → Bacteria → Acidobacteria	2490	Open in IMG/M
3300031720\|Ga0307469_10515829	All Organisms → cellular organisms → Bacteria → Acidobacteria	1051	Open in IMG/M
3300031740\|Ga0307468_102113168	All Organisms → cellular organisms → Bacteria → Acidobacteria	542	Open in IMG/M
3300031805\|Ga0318497_10484190	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	693	Open in IMG/M
3300031820\|Ga0307473_10724174	All Organisms → cellular organisms → Bacteria → Acidobacteria	701	Open in IMG/M
3300031820\|Ga0307473_11134733	All Organisms → cellular organisms → Bacteria → Acidobacteria	578	Open in IMG/M
3300031902\|Ga0302322_102973928	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300031962\|Ga0307479_12022143	All Organisms → cellular organisms → Bacteria → Acidobacteria	525	Open in IMG/M
3300032094\|Ga0318540_10606469	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	527	Open in IMG/M
3300032180\|Ga0307471_100042435	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	3661	Open in IMG/M
3300032897\|Ga0335071_10806854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	887	Open in IMG/M
3300032898\|Ga0335072_10510256	All Organisms → cellular organisms → Bacteria → Acidobacteria	1242	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.13%
Host-Associated	Host-Associated	1.87%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.49%
Aquatic	Environmental → Aquatic	33.64%
Plants	Host-Associated → Plants	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.07%
Freshwater	Environmental → Aquatic → Freshwater	21.50%
Sediment	Environmental → Aquatic → Sediment	12.15%
Peat	Environmental → Terrestrial → Peat	8.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	38.32%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	21.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	12.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.21%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	8.41%
Loam	Environmental → Terrestrial → Soil → Loam	6.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.76%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	14.02%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	12.15%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.21%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	8.41%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	8.41%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	7.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.61%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.80%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	2.80%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	12.15%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.21%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.48%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	5.61%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.67%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.74%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.74%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	1.87%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001137	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3	Environmental	Open in IMG/M
3300002560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_20cm	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005568	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009628	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_10	Environmental	Open in IMG/M
3300009631	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100	Environmental	Open in IMG/M
3300009635	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_11_10	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014158	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014199	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaG	Environmental	Open in IMG/M
3300014495	Permafrost microbial communities from Stordalen Mire, Sweden - 712P3M metaG	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300018019	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019785	Permafrost microbial communities from Stordalen Mire, Sweden - 612E3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300019787	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction)	Environmental	Open in IMG/M
3300020006	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300025439	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_10_100 (SPAdes)	Environmental	Open in IMG/M
3300025453	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_40 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025509	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026376	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-B	Environmental	Open in IMG/M
3300026480	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-B	Environmental	Open in IMG/M
3300026529	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)	Environmental	Open in IMG/M
3300026542	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148 (SPAdes)	Environmental	Open in IMG/M
3300027034	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028552	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_N1_1	Environmental	Open in IMG/M
3300028762	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_3	Environmental	Open in IMG/M
3300028788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_E2_2	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029911	III_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029990	I_Fen_N2 coassembly	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031233	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_2	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031902	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12637J13337_10137252	3300001137	Forest Soil	GHPVTTTVQGRMQESRKSVVGKVRGGGPTVSVHTGSGDVQVD*
JGI25383J37093_101144621	3300002560	Grasslands Soil	TSSGTIVVDEPVTTTVQGRVQESRRSISGKVRGGGPMIQVHTGSGNISIY*
JGIcombinedJ51221_102729672	3300003505	Forest Soil	SGSVSVNHPVTTTIQGRVQDARKSIQGKVRGGGPEISVHTGSGDVRVD*
Ga0062385_101012611	3300004080	Bog Forest Soil	GSVTLGHPVTTTIQGRVQETRKSVVGKVRGGGPVVSVHTGSGDVAVD*
Ga0062389_1045315952	3300004092	Bog Forest Soil	SSGTVSLGHPVTTTLQGQIQESRKSVIGKVRGGGPVVSVHTGSGDVQVE*
Ga0070714_1002259401	3300005435	Agricultural Soil	TSSGSVVVNHPVTTTVQGRVEDARKSIRGQVRGGGPEVSVHTGSGDVHVD*
Ga0066703_106995972	3300005568	Soil	HPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD*
Ga0066702_100449034	3300005575	Soil	TVQGRVEESRRRVEGKVHGGGPLVSVHTGSGDVHIY*
Ga0075028_1006740612	3300006050	Watersheds	LTTTIQGRVESPQKSVTGKVRGGGPSITVHTGSGDVRIR*
Ga0075029_1003072871	3300006052	Watersheds	TTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0075029_1006242562	3300006052	Watersheds	SSGSVTMDHPVTTTIQGRVQESRKSIVGKVRGGGPTVSVHTGSGDIHVQ*
Ga0075026_1005481112	3300006057	Watersheds	PVTTTIQGRVEDSRKTIRGKVRGGGPEISVHTGSGDVHVD*
Ga0075017_1005127671	3300006059	Watersheds	TVQGRVQESRKSIVGKVRGGGPVISVHTGSGDIHVQ*
Ga0075019_106629191	3300006086	Watersheds	SSGSVTLGHPVTTTVQGRIQETRKSVVGKVRGGGPTISVHTGSGDVAVD*
Ga0075015_1000501684	3300006102	Watersheds	PVTTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0075030_1005273992	3300006162	Watersheds	GHPVTTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0075018_108457361	3300006172	Watersheds	STTVQGRVNESRKSVVGKVRGGGPVISVHTGSGDVQVD*
Ga0075014_1006442442	3300006174	Watersheds	GSVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPIVSVHTGSGDVRVD*
Ga0070765_1010729542	3300006176	Soil	TVQGRVQESRKSVVGKVRGGGPTISVHTGSGDISVD*
Ga0075021_102885072	3300006354	Watersheds	DISTSSGSVTMDHPVTTTIQGRVQESRKSIVGKVRGGGPTISVHTRSGDIYVR*
Ga0075434_1006024421	3300006871	Populus Rhizosphere	TMTVTGRIREHPRTVKGKVNGGGPLVSVETGSGDVQID*
Ga0116214_13927892	3300009520	Peatlands Soil	IEGRVRESRKSVVGKVRGGGPMVSVHTGSGNVQVD*
Ga0116218_15203671	3300009522	Peatlands Soil	DISSNSGTVTLGHPVTTTVQGRIQESRKSVVGKVHGGGPTVSVHTGSGDISVD*
Ga0116125_10145004	3300009628	Peatland	STNSGTVTLGHPVSTTVQGRIQESRKSVVGKVRGGGPMVSVHTSSGDVQVD*
Ga0116115_11619411	3300009631	Peatland	VQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD*
Ga0116117_11087271	3300009635	Peatland	VDVSSSSGTVTLGHPVTTTVQGRIQEMKKSVVGKVLGGGPMISVHTGSGDVAVD*
Ga0116134_11951412	3300009764	Peatland	SGNVTVGHPVTTTVQGRVEESRKSVVGKVRGGGPTISVHTGSGDVQVD*
Ga0116134_11978841	3300009764	Peatland	VTLGHPVTTTIQGRVRESRKSVVGKVRGGGPMVSVHTSSGNVQVD*
Ga0126382_103682402	3300010047	Tropical Forest Soil	SGSVEVGHPVTTTIQGRVQEERKSIRGRVNGGGPEISVHTGSGDIRVD*
Ga0126373_100638463	3300010048	Tropical Forest Soil	TSSGSIVVSPAVTTTVQGRVEDSRKMIRGKVRGGGPEIAVHTGSGDIRID*
Ga0074046_100305051	3300010339	Bog Forest Soil	DAAFDVDISSNSGNVTLGHPVPTTVQGRIQEWRPRAGGKGRGGGPTVSVHTGSGDVQVD*
Ga0074045_100292721	3300010341	Bog Forest Soil	DVSTNSGTVTLGHPVSTTVQGRIQESRKSVVGKVRGGGPMVSVHTSSGDVQVD*
Ga0074045_106934271	3300010341	Bog Forest Soil	VTLGHPVNTTVQGRIQESKKSVVGKVRGGGPIVSVHTGSGDVQVD*
Ga0074044_106794881	3300010343	Bog Forest Soil	VTLGHPVTTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGDVQVD*
Ga0137382_105722822	3300012200	Vadose Zone Soil	ISSNSGTVVVDHPVTTTVQGRVQEERKSVVGKVRNGGPTISVHTGSGDIRLD*
Ga0137399_103942511	3300012203	Vadose Zone Soil	TTVQGRVQERKSVVGKVRNGGPTISVHTGSGDIRLD*
Ga0137390_113932111	3300012363	Vadose Zone Soil	NSGTVTLGHPVQTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGDVQVD*
Ga0137390_117169571	3300012363	Vadose Zone Soil	ISSNSGTVVVDHPVTTTVQGRVQEERKSVVGKVHNGGPTISVHTGSGDIRVD*
Ga0137397_106501122	3300012685	Vadose Zone Soil	SGNATIDHPVTTTIQGKVQEGHKTVTGKVRGGGPLLSVRTGSGDVHVD*
Ga0137413_113858382	3300012924	Vadose Zone Soil	TTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGNISVD*
Ga0137416_114233691	3300012927	Vadose Zone Soil	TVQGRIQESRKSVVGKARAGGPTVSVHTGSGDVQVD*
Ga0164304_112997561	3300012986	Soil	PVTTTVQGRVEEAHKQIRGKVRGGGPEISVHTGSGDVRVD*
Ga0181524_103058872	3300014155	Bog	VTVGHPVTTTVQGRVEESRKSVVGKVRGGGPTISVHTGSGDVQVD*
Ga0181521_102721841	3300014158	Bog	TTTVQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD*
Ga0181530_102097442	3300014159	Bog	GHPVTTTIEGRVRESRKSVVGKVHGGGPLISVHTGSGDVQVD*
Ga0181530_103550402	3300014159	Bog	GHPVTTTIEGRVRESRKSVVGKVHGGGPLISVHTGSGDVQVN*
Ga0181523_103548472	3300014165	Bog	VQGRIQESRKSVVGKVRGGGPMISVHTGSGDIQVD*
Ga0181535_107869751	3300014199	Bog	LGHPVNTTVQGRIQESKKSVVGKVRGGGPAVSVHTGSGDVAVD*
Ga0182015_102753192	3300014495	Palsa	GHPVTTTVQGRVQESRKSVVGKVGNGGPIVSVHTGSGDVRVD*
Ga0137412_106255912	3300015242	Vadose Zone Soil	EVRHPVTTTIQGRVQEERKSIRGKVNGGGPEISVHTGSGDVRVD*
Ga0137412_110173702	3300015242	Vadose Zone Soil	VTLGHPVATTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGNISVD*
Ga0137403_101530071	3300015264	Vadose Zone Soil	SGTVVVDHPVTTTVQGRVQEERKSVVGKVRNGGPTISVHTGSGDIRLD*
Ga0132258_115212001	3300015371	Arabidopsis Rhizosphere	NVDHPLTTTIQGRLESPNKHVSGKVRGGGPMITVHTGSGDVQIR*
Ga0187801_101947832	3300017933	Freshwater Sediment	DVDISSSSGTVTLAHPVTTTLQRRIQESRKSVIGKVRGGGPIVSVHTGSGDVAVD
Ga0187817_107926751	3300017955	Freshwater Sediment	TVTLGHPVTATVQGRIQESRKSVVGKVRGGGPMISVHTGSGDIQVD
Ga0187822_100456921	3300017994	Freshwater Sediment	VATTVQGRVTDSRKSVRGKVRNGGPEVTVHTGSGNIRID
Ga0187874_102159851	3300018019	Peatland	TTVQGRIQESRKSVVGKVHGGGPTISVHTGSGDVQVD
Ga0187885_104714791	3300018025	Peatland	VSSSSGSVTMGHPVTTTVQGRIQESRKSVVGKVHGGGPMISVHTGSGNVRVE
Ga0187863_100812551	3300018034	Peatland	NSGSVTLGHPVSTTVQGRIQESRKSVVGKVRGGGPMISVHTGSGEVRVE
Ga0187766_101585701	3300018058	Tropical Peatland	HPVTTTVQGRIQESHKSVVGKVRGGGPTISVHTGSGDIQVD
Ga0187773_100262143	3300018064	Tropical Peatland	SSSSGSVTMGHPVTTTIQGRVQETRKSVVGKVRGGGPTVSVHTGSGDIHVD
Ga0187770_112850792	3300018090	Tropical Peatland	LGHPVTTTVEGRVRESRKSVVGKVRGGGPMISVHTGSGNIQVD
Ga0182022_12326342	3300019785	Fen	VTTTIQGRIQDSKKSVVGKVRGGGPVLSVHTGSGDVQVD
Ga0182031_14723451	3300019787	Bog	VNLQLPADAAFDADISSSSGSVTLGHPVTTTVQGRVQESRKSVVGKVRGGGPVVSVHTG
Ga0193735_10906822	3300020006	Soil	TTTIQGRVEDAHKTIRGKVRGGGPEISVHTGSGDVHVD
Ga0210403_104873973	3300020580	Soil	DVDISSSSGNVTLGHPVSTTVQGRVQEARKSVVGKVRGGGPPMVSVHTGSGNIALD
Ga0210399_114388982	3300020581	Soil	TVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0210390_104660471	3300021474	Soil	STSSGSVTLGHPVTTTVQGRIDESRKSVIGKVHGGGPVVSVPTGSGDVQVD
Ga0208323_10525032	3300025439	Peatland	TVQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0208455_10070256	3300025453	Peatland	VQGRIQDSKKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0208188_10030891	3300025507	Peatland	TVQGRVEESRKSVVGKVRGGGPMISVHTGSGDVQVD
Ga0208848_10346261	3300025509	Arctic Peat Soil	NSGTVTLGHAVTTTVQGRIQESRKSVVGKVRGGGPTISVHTGSGDVQVD
Ga0209687_10248003	3300026322	Soil	SGTVVLDKPVTTTVQGRVEESRRRIEGKVHGGGPLVSVHTGSGDVHIY
Ga0257167_10703901	3300026376	Soil	TVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0257177_10022531	3300026480	Soil	LGHPVQTTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGDVQVD
Ga0209806_12682031	3300026529	Soil	HPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209805_14296991	3300026542	Soil	GTVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209730_10023851	3300027034	Forest Soil	SGSVSVNHPVTTTIQGRIEESRKSIRGKVRGGGPEISVHTGSGDVRVD
Ga0209076_10185853	3300027643	Vadose Zone Soil	GSIVVGQPVTTTIQGRVEDAHKTIRGKVRGGGPEIAVHTGSGDIRID
Ga0209076_10447541	3300027643	Vadose Zone Soil	TLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209117_11922361	3300027645	Forest Soil	SSGSVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0209655_102665171	3300027767	Bog Forest Soil	VGHPVTTTIQGRIQESRKSVIGKVLGGGPVISVHTGSGDIQVN
Ga0209698_106556982	3300027911	Watersheds	TTTVQGRIQESRKSVVGKVRGGGPIISVHTGSGDVRVD
Ga0209069_108311931	3300027915	Watersheds	VTTTVQGRIQETRKSVVGKVRGGGPTISVHTGSGDVAVD
Ga0302149_10796601	3300028552	Bog	SSSGSVNMGHPVSTTVQGRIEESRKSVVGKVRGGGPMISVHTGSGDVAVN
Ga0302202_105491701	3300028762	Bog	DISSSSGSVNMGHPVSTTVQGRIEESRKSVVGKVRGGGPMISVHTGSGDVAVN
Ga0302189_100595821	3300028788	Bog	TTVQGRIEESRKSVVGKVRGGGPMISVHTGSGDVAVN
Ga0308309_111104212	3300028906	Soil	GSVTLGHPVTTTVQGRIDESRKSVIGKVHGGGPVVSVHTGSGDVQVD
Ga0311361_105221781	3300029911	Bog	SSGSVTMGHPVSTTVQGRIEETRKSVVGKVRGGGPTISVHTGSGDVAVD
Ga0311336_119036542	3300029990	Fen	NSGTVTLGHPVTTTVQGRIQESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0311353_102258351	3300030399	Palsa	VQGRVPESRKSVVGKVGSGGPIVSVHTGSGDVRVD
Ga0311370_115064922	3300030503	Palsa	LGHPVATTVQGRVPESRKSVVGKVGSGGPIVSVHTGSGDVRVD
Ga0170822_110847501	3300031122	Forest Soil	TTVQGRIQESRKSVVGKVRGGGPVVSVHTGSGNISVD
Ga0302307_106061551	3300031233	Palsa	TVQGRVPESRKSVVGKVGSGGPIVSVHTGSGDVRVD
Ga0318561_100908102	3300031679	Soil	LEVNHPVTTTVQGRVTDSRKSVRGKVRSGGPEVTVHTGSGNIRID
Ga0310686_1043790901	3300031708	Soil	NSGSVTLGHPVTTTVQGRVGESRKSVVGKVRGGGPTVSVHTGSGDVQVD
Ga0307469_105158291	3300031720	Hardwood Forest Soil	VDHPVTTTVQGRVQEERKSVVGKVRNGGPTISVHTGSGDIRLD
Ga0307468_1021131681	3300031740	Hardwood Forest Soil	PVTTTVQGRVQETHKSIRGKVHGGGPEISVHTGSGDVHVD
Ga0318497_104841901	3300031805	Soil	SSGNLEVNHPVTTTVQGRVTDSRKSVRGKVRSGGPEVTVHTGSGNIRID
Ga0307473_107241742	3300031820	Hardwood Forest Soil	TTTVQGRVEDSRKSIRGKVRGGGPEISVHTGSGDVHVD
Ga0307473_111347332	3300031820	Hardwood Forest Soil	PVTTTVQGRVEEAHKSIRGKVRGGGPEISVHTGSGDVRVD
Ga0302322_1029739281	3300031902	Fen	TVVVEHPVTTTVQGRVQERKSVVGKVLNGGPTISVHTGSGDIRVD
Ga0307479_120221431	3300031962	Hardwood Forest Soil	VTTTVQGRVEDSRKMIRGKVHGGGPEIAVHTGSGDIRID
Ga0318540_106064692	3300032094	Soil	NLEVNHPVTTTVQGRVTDSRKSVRGKVRSGGPEVTVHTGSGNIRID
Ga0307471_1000424351	3300032180	Hardwood Forest Soil	IQGRVQEERKSIRGKVNGGGPEISVHTGSGDVRVD
Ga0335071_108068542	3300032897	Soil	TIQGRVQESRKSVVGKVRGGGPTVSVHTGSGDVTVE
Ga0335072_105102563	3300032898	Soil	VTATIQGHVSESRKSVVGKVRGGGPTISVHTGSGDISVE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092639

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences