NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F092615

Metagenome / Metatranscriptome Family F092615

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F092615
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 67 residues
Representative Sequence MLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVIS
Number of Associated Samples 96
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 6.54 %
% of genes near scaffold ends (potentially truncated) 21.50 %
% of genes from short scaffolds (< 2000 bps) 74.77 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (67.290 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(17.757 % of family members)
Environment Ontology (ENVO) Unclassified
(45.794 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(48.598 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 45.16%    β-sheet: 6.45%    Coil/Unstructured: 48.39%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF00682HMGL-like 47.66
PF00069Pkinase 16.82
PF01740STAS 6.54
PF02776TPP_enzyme_N 1.87
PF13180PDZ_2 0.93
PF16327CcmF_C 0.93
PF07991IlvN 0.93
PF01799Fer2_2 0.93
PF10369ALS_ss_C 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 67.29
COG0059Ketol-acid reductoisomeraseAmino acid transport and metabolism [E] 1.87
COG0499S-adenosylhomocysteine hydrolaseCoenzyme transport and metabolism [H] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms67.29 %
UnclassifiedrootN/A32.71 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001661|JGI12053J15887_10185976All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311066Open in IMG/M
3300001989|JGI24739J22299_10151972Not Available684Open in IMG/M
3300002245|JGIcombinedJ26739_100072034All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3190Open in IMG/M
3300002245|JGIcombinedJ26739_100094950Not Available2787Open in IMG/M
3300004479|Ga0062595_101257536All Organisms → cellular organisms → Bacteria662Open in IMG/M
3300004631|Ga0058899_12153583Not Available586Open in IMG/M
3300005293|Ga0065715_10141532Not Available1846Open in IMG/M
3300005335|Ga0070666_10112850All Organisms → cellular organisms → Bacteria1880Open in IMG/M
3300005338|Ga0068868_100166943All Organisms → cellular organisms → Bacteria → Acidobacteria1821Open in IMG/M
3300005436|Ga0070713_100740255All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR31940Open in IMG/M
3300005458|Ga0070681_10344884All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1399Open in IMG/M
3300005459|Ga0068867_101208587Not Available695Open in IMG/M
3300005548|Ga0070665_100354089All Organisms → cellular organisms → Bacteria1474Open in IMG/M
3300005614|Ga0068856_102622707Not Available510Open in IMG/M
3300005995|Ga0066790_10002122All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae8614Open in IMG/M
3300006028|Ga0070717_10792577Not Available862Open in IMG/M
3300006041|Ga0075023_100035280All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1496Open in IMG/M
3300006050|Ga0075028_100038209Not Available2246Open in IMG/M
3300006052|Ga0075029_100385934Not Available908Open in IMG/M
3300006057|Ga0075026_100767199Not Available582Open in IMG/M
3300006059|Ga0075017_100162809All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1595Open in IMG/M
3300006059|Ga0075017_100255791All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1282Open in IMG/M
3300006162|Ga0075030_100062946All Organisms → cellular organisms → Bacteria3072Open in IMG/M
3300006173|Ga0070716_100228400All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1255Open in IMG/M
3300006174|Ga0075014_100000607All Organisms → cellular organisms → Bacteria → Acidobacteria9376Open in IMG/M
3300006358|Ga0068871_101106258Not Available741Open in IMG/M
3300009038|Ga0099829_10499108All Organisms → cellular organisms → Bacteria1010Open in IMG/M
3300009093|Ga0105240_10578654All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311239Open in IMG/M
3300009098|Ga0105245_10295237All Organisms → cellular organisms → Bacteria1588Open in IMG/M
3300009101|Ga0105247_10106064All Organisms → cellular organisms → Bacteria1802Open in IMG/M
3300009148|Ga0105243_12187847Not Available590Open in IMG/M
3300009174|Ga0105241_10578489All Organisms → cellular organisms → Bacteria1012Open in IMG/M
3300009176|Ga0105242_11319542Not Available746Open in IMG/M
3300010371|Ga0134125_10485476All Organisms → cellular organisms → Bacteria1369Open in IMG/M
3300010400|Ga0134122_10239955All Organisms → cellular organisms → Bacteria1525Open in IMG/M
3300010401|Ga0134121_10072463Not Available2852Open in IMG/M
3300011120|Ga0150983_14723630All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1749Open in IMG/M
3300011270|Ga0137391_10061333All Organisms → cellular organisms → Bacteria → Acidobacteria3219Open in IMG/M
3300011444|Ga0137463_1008362All Organisms → cellular organisms → Bacteria → Acidobacteria3501Open in IMG/M
3300012189|Ga0137388_10161417All Organisms → cellular organisms → Bacteria1994Open in IMG/M
3300012202|Ga0137363_10120885All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2021Open in IMG/M
3300012207|Ga0137381_11777085Not Available506Open in IMG/M
3300012361|Ga0137360_10069736All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2600Open in IMG/M
3300012469|Ga0150984_102587743All Organisms → cellular organisms → Bacteria2046Open in IMG/M
3300012582|Ga0137358_10403562All Organisms → cellular organisms → Bacteria924Open in IMG/M
3300012683|Ga0137398_10327817Not Available1033Open in IMG/M
3300012685|Ga0137397_10157377All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311685Open in IMG/M
3300012917|Ga0137395_10099707All Organisms → cellular organisms → Bacteria1928Open in IMG/M
3300012917|Ga0137395_10874544Not Available651Open in IMG/M
3300012917|Ga0137395_11090568Not Available566Open in IMG/M
3300012922|Ga0137394_10580492All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300012924|Ga0137413_11468747All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300012929|Ga0137404_10012072All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6012Open in IMG/M
3300012929|Ga0137404_10867349Not Available822Open in IMG/M
3300012944|Ga0137410_10260171All Organisms → cellular organisms → Bacteria → Acidobacteria1363Open in IMG/M
3300014498|Ga0182019_10725575Not Available706Open in IMG/M
3300015264|Ga0137403_10628655All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae937Open in IMG/M
3300015373|Ga0132257_100136749All Organisms → cellular organisms → Bacteria2860Open in IMG/M
3300017792|Ga0163161_10273341All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311323Open in IMG/M
3300017927|Ga0187824_10022980All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1848Open in IMG/M
3300017993|Ga0187823_10001042All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis6458Open in IMG/M
3300019879|Ga0193723_1037731All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1442Open in IMG/M
3300020004|Ga0193755_1121503Not Available814Open in IMG/M
3300020080|Ga0206350_11226449All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311125Open in IMG/M
3300020579|Ga0210407_10040774All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium3456Open in IMG/M
3300020583|Ga0210401_10537562All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311031Open in IMG/M
3300021088|Ga0210404_10202400All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311065Open in IMG/M
3300021344|Ga0193719_10380006Not Available584Open in IMG/M
3300021407|Ga0210383_10881974Not Available763Open in IMG/M
3300021432|Ga0210384_10011908All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis8749Open in IMG/M
3300021432|Ga0210384_10192127All Organisms → cellular organisms → Bacteria1834Open in IMG/M
3300021479|Ga0210410_10168384All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1957Open in IMG/M
3300021559|Ga0210409_10333484All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1364Open in IMG/M
3300025903|Ga0207680_10708017All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → unclassified Candidatus Tectomicrobia → Candidatus Tectomicrobia bacterium RIFCSPLOWO2_12_FULL_69_37722Open in IMG/M
3300025914|Ga0207671_10743310All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300025927|Ga0207687_11137999All Organisms → cellular organisms → Bacteria → Proteobacteria671Open in IMG/M
3300025934|Ga0207686_10198523All Organisms → cellular organisms → Bacteria → Acidobacteria1435Open in IMG/M
3300025938|Ga0207704_10529300Not Available954Open in IMG/M
3300025939|Ga0207665_10208845All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1425Open in IMG/M
3300025939|Ga0207665_10945726All Organisms → cellular organisms → Bacteria684Open in IMG/M
3300026035|Ga0207703_12040219Not Available550Open in IMG/M
3300026089|Ga0207648_12245506Not Available506Open in IMG/M
3300026294|Ga0209839_10005389All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis5874Open in IMG/M
3300026304|Ga0209240_1101483All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311028Open in IMG/M
3300026341|Ga0257151_1025933Not Available622Open in IMG/M
3300027603|Ga0209331_1108265Not Available676Open in IMG/M
3300027660|Ga0209736_1125127Not Available690Open in IMG/M
3300027869|Ga0209579_10114885All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1429Open in IMG/M
3300027910|Ga0209583_10006465All Organisms → cellular organisms → Bacteria → Acidobacteria3354Open in IMG/M
3300027911|Ga0209698_10014109All Organisms → cellular organisms → Bacteria → Acidobacteria7851Open in IMG/M
3300028047|Ga0209526_10048890All Organisms → cellular organisms → Bacteria → Acidobacteria2978Open in IMG/M
3300028379|Ga0268266_10437908All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311241Open in IMG/M
3300028379|Ga0268266_10671099All Organisms → cellular organisms → Bacteria998Open in IMG/M
3300028536|Ga0137415_10983076Not Available655Open in IMG/M
3300029636|Ga0222749_10091298All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria1416Open in IMG/M
(restricted) 3300031197|Ga0255310_10140028Not Available662Open in IMG/M
3300031446|Ga0170820_10955994Not Available745Open in IMG/M
3300031720|Ga0307469_10041437All Organisms → cellular organisms → Bacteria2802Open in IMG/M
3300031720|Ga0307469_10128213All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR311851Open in IMG/M
3300031740|Ga0307468_101175255Not Available690Open in IMG/M
3300031740|Ga0307468_102370599Not Available517Open in IMG/M
3300031962|Ga0307479_10136156All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR312404Open in IMG/M
3300032770|Ga0335085_10004502All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae23048Open in IMG/M
3300032893|Ga0335069_10196962All Organisms → cellular organisms → Bacteria2458Open in IMG/M
3300033433|Ga0326726_10003571All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae14259Open in IMG/M
3300033433|Ga0326726_10619496Not Available1041Open in IMG/M
3300034195|Ga0370501_0016557All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2105Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil17.76%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds9.35%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil9.35%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil7.48%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.67%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere4.67%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.67%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.74%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.80%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil2.80%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.80%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.87%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Soil1.87%
Peat SoilEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil1.87%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere1.87%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.93%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.93%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.93%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.93%
FenEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Fen0.93%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.93%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil0.93%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.93%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300001989Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5Host-AssociatedOpen in IMG/M
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300004631Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300005293Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1Host-AssociatedOpen in IMG/M
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005338Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2Host-AssociatedOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005548Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaGHost-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005995Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050EnvironmentalOpen in IMG/M
3300006028Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaGEnvironmentalOpen in IMG/M
3300006041Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006059Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006173Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaGEnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006358Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2Host-AssociatedOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009098Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaGHost-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300010371Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010401Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1EnvironmentalOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011444Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT800_2EnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012207Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaGEnvironmentalOpen in IMG/M
3300012361Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012924Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014498Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaGEnvironmentalOpen in IMG/M
3300015264Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300017792Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaGHost-AssociatedOpen in IMG/M
3300017927Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4EnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020080Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020583Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021344Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2EnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025939Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026035Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026294Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-050 (SPAdes)EnvironmentalOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026341Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-AEnvironmentalOpen in IMG/M
3300027603Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027660Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027869Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027910Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)EnvironmentalOpen in IMG/M
3300027911Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300028379Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031197 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH1_T0_E1EnvironmentalOpen in IMG/M
3300031446Fir Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031962Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515EnvironmentalOpen in IMG/M
3300032770Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5EnvironmentalOpen in IMG/M
3300032893Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1EnvironmentalOpen in IMG/M
3300033433Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MNEnvironmentalOpen in IMG/M
3300034195Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
JGI12053J15887_1018597613300001661Forest SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVIS*
JGI24739J22299_1015197233300001989Corn RhizosphereDDMHDEPELIAVLQVGLVASDECSERHEVLIVKNPSTKPEPLSVRLRQIFEEHVRGIDPSRVDPSKKAIGSNGNLD*
JGIcombinedJ26739_10007203453300002245Forest SoilMVEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKTIS*
JGIcombinedJ26739_10009495013300002245Forest SoilECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDLSASIYHCIDLSKKVMS*
Ga0062595_10125753623300004479SoilMPMKPELIATLQVGMAASGECSNCHEVFVVKGSSSKPEPLTDRLRQIFEEHVRGAELSKKAIS*
Ga0058899_1215358323300004631Forest SoilMAERPELIARFQVGLAASGECSAGHEVILVRGQGGKPEQLGDMLKQAFEEHVHSVDLSASIYHRIDLSKKVMS*
Ga0065715_1014153213300005293Miscanthus RhizosphereELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGAGLSKKAMSQSGNLD*
Ga0070666_1011285033300005335Switchgrass RhizosphereMLMKPELIATLQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLKQIFEEHVRRAELSKKAIDSNGNLD*
Ga0068868_10016694323300005338Miscanthus RhizosphereMLMKPELIATLQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLRQIFEEHVRGAELSKKAIS*
Ga0070713_10074025513300005436Corn, Switchgrass And Miscanthus RhizospherePELIATLQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLKQIFEKHVRRAELSKKAIGSNGNLD*
Ga0070681_1034488423300005458Corn RhizosphereMHDEPELIATLQVGMAASGECSEGHEVFMVKSASTKPEQLSNRLRQIFEEHVRGVDPSKVDPSKKAIGSNGNLD*
Ga0068867_10120858733300005459Miscanthus RhizospherePELIATLQVGLAASGECSECHEVFMVKSASTKPEQLSNRLRQIFEEHVRGVDPSKVDPSKKAIGSNGNLD*
Ga0070665_10035408923300005548Switchgrass RhizosphereMKPELIATLQVGMAASGECSNCHEVFVVKGSSSKPEPLTDRLRQIFEEHVRGAELSKKAIS*
Ga0068856_10262270723300005614Corn RhizosphereMRGMLEKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGADLSKKAMSQSGNLD*
Ga0066790_1000212273300005995SoilMLEKPELVARLQVGMAASGECSVCHEVFVVRGQSSRPEHLSDRLKQIFEEHVRGVDLSKKVMS*
Ga0070717_1079257733300006028Corn, Switchgrass And Miscanthus RhizosphereMLMKPELIATLQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLKQIFEKHVRRAELSKKAIGSNGNLD*
Ga0075023_10003528033300006041WatershedsMLPKPELIATLQVGMAASGECSACHEVFVVKGSSSKPESLTDRLRQIFEDHVRGADLSKKAIS*
Ga0075028_10003820933300006050WatershedsMLEKPELIARLQVGLAASGECSICHEVFVVKGQSSKPEQLSDRLKQIFEEHVRGVDLSKKLISESGNLD*
Ga0075029_10038593413300006052WatershedsVAAWGMAEKPELIARSQVGLAASSECSACHEVIVVKGQSSQPEQLGDMLRQAFEEHVRGVDLSASIYRKK*
Ga0075026_10076719913300006057WatershedsANLWQHEGMLEKPELIARLQVGLAASAECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVMS*
Ga0075017_10016280933300006059WatershedsMAEKPELIARSQVGLAASSECSACHEVVVVKGQSSQPEQLGDMLRQAFEEHVRGVDLSASIYRKK*
Ga0075017_10025579133300006059WatershedsMLPKPELIATLQVGMAASGECSACHEVFVVKGSSSKPEPLTDRLRQIFEEHVRGADLSKKAIS*
Ga0075030_10006294633300006162WatershedsMAEKPELIARSQVGLAASSECSACHEVIVVKGQSSQPEQLGDMLRQAFEEHVRGVDLSASIYRKK*
Ga0070716_10022840013300006173Corn, Switchgrass And Miscanthus RhizosphereMLEKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGADLSKKAMSQSGNLD*
Ga0075014_10000060763300006174WatershedsVAAWGMAEKPELIARSQVGLAASSECSACHEVVVVKGQSSQPEQLGDMLRQAFEEHVRGVDLSASIYRKK*
Ga0068871_10110625813300006358Miscanthus RhizosphereISPLQICGSMRGMLEKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGADLSKKAMSQSGNLD*
Ga0099829_1049910823300009038Vadose Zone SoilMVEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVMS*
Ga0105240_1057865413300009093Corn RhizosphereMKPELIATLQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLKQIFEEHVRRAELSKKAIDSNGNLD*
Ga0105245_1029523723300009098Miscanthus RhizosphereMLEKPELIARLQVGLAASGECSVCHQVFVVSQSSRPEQLSDRLKQIFEEHIRGADLSKKAMSQSGNLD*
Ga0105247_1010606423300009101Switchgrass RhizosphereMLEKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGAGLSKKAMSQSGNLD*
Ga0105243_1218784713300009148Miscanthus RhizosphereMLEIPELIARLQVGLAASGECSVCHQVFVVSQSSRPEQLSDRLKQIFEEHIRGAGLSKKAMSQSGNLD*
Ga0105241_1057848913300009174Corn RhizosphereMLEKPELIARLQVGLAASGECSVCHKVFVVSQSSRPEQLSDRLKQIFEEHIRGAGLSKKAMSQSGNLD*
Ga0105242_1131954213300009176Miscanthus RhizosphereMLEKPELIAALQVGMSASGECSECHEVFIVKGSSRNPEPLSNRLRQIFEEHVLGIDPSKVDPSKKAIGSNGNLD*
Ga0134125_1048547613300010371Terrestrial SoilMLEKPELIARLQVGLAASGECSVCHQVFVVSQSSRPEQLSDRLKQIFEEHIRGAGLSKKAMSQSGNLD*
Ga0134122_1023995523300010400Terrestrial SoilMHDEPELIATLQVGLAASGECSECHEVFMVKSASTKPEQLSNRLRQIFEEHVRGVDPSKVDPSKKAIGSNGNLD*
Ga0134121_1007246333300010401Terrestrial SoilLEKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGADLSKKAMSQSGNLD*
Ga0150983_1472363023300011120Forest SoilMAERPELIARFQVGLAASGERSAGHEVILVRGQGGKPEQLGDMLKQAFEEHVHSVDLSASIYHRIDLSKKVMS*
Ga0137391_1006133333300011270Vadose Zone SoilMAERPELIARFQVGLAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDLSASIYHCIDLSKKVMS*
Ga0137463_100836243300011444SoilMLEKPELVARLQVGMGASGECSVCHEVIVVQGASSRPEHLSAMLLQAFEEHVRSVDLSEKAIGESGNLD*
Ga0137388_1016141723300012189Vadose Zone SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVMS*
Ga0137363_1012088523300012202Vadose Zone SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSHRLKQIFEEHVRGVDLSKKVISESGNLD*
Ga0137381_1177708513300012207Vadose Zone SoilLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVMS*
Ga0137360_1006973623300012361Vadose Zone SoilMVEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVISESGNLD*
Ga0150984_10258774313300012469Avena Fatua RhizosphereKLIATLQVGMAASGECSNCHEVFVVKGPSSKPEPLTDRLRQIFEEHVRRAELSKKAIS*
Ga0137358_1040356213300012582Vadose Zone SoilMFEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSHRLKQIFEEHVRGVDLSKKVIS*
Ga0137398_1032781723300012683Vadose Zone SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPERLSDRLKQIFEEHVRGVDLSKKVISESGNLD*
Ga0137397_1015737723300012685Vadose Zone SoilMFEKPELIARLQVGLAASGECSVCHEVFVVRESSRPERLSDRLKQIFEEHVRGVDLSKKVIS*
Ga0137395_1009970713300012917Vadose Zone SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVISESGNLD*
Ga0137395_1087454413300012917Vadose Zone SoilMVEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHIRSVDLSKKTIS*
Ga0137395_1109056823300012917Vadose Zone SoilMAERPELIARFQVGLAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDLSASIYHCIDLSKKVIS*
Ga0137394_1058049223300012922Vadose Zone SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPERLSDRLKQIFEEHVRGVDLSKKVIS*
Ga0137413_1146874723300012924Vadose Zone SoilMLEKPELIARLQVGLAASAECSVCHEVFVVSQSSRPEQLSDRLKQIFDEHVRGFDVSKKVMS*
Ga0137404_1001207263300012929Vadose Zone SoilMFEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSHRLKQIFEEHVRGVDLSKKVISESGNLD*
Ga0137404_1086734923300012929Vadose Zone SoilMLEKPELVARLQVGMAASGECSACHEVIVVQGASSRPEHLSAMLLQAFEEHIRSVDLSEKAIGVSGILD*
Ga0137410_1026017123300012944Vadose Zone SoilMFEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVIS*
Ga0182019_1072557523300014498FenMKPELIATLQVGMAASGECSACHEVFVVKGSNSKPEPLTDRLRQIFEEHVRGAELSKKAIS*
Ga0137403_1062865513300015264Vadose Zone SoilMAASGECSACHEVIVVQGASSRPEHLSAMLLQAFEEHIRSVDLSEKAIGVSGILD*
Ga0132257_10013674923300015373Arabidopsis RhizosphereMHDEPELIATLQVGLAASDECSERHEVLIVKNPSTRPEPLSVRLRQIFEEHVRGIDPSRVDPSKKAIGSNGNLD*
Ga0163161_1027334123300017792Switchgrass RhizosphereMKPELIATLQVGMAASGECSNCHEVFVVKGSSSKPEPLTDRLRQIFEEHVRGAELSKKAI
Ga0187824_1002298023300017927Freshwater SedimentMLEKPELIARLQVGLAASGECSVCHEVFVVKGSSSKPEPLSDRLKQIFEEHVRGVDLSKKAIRQSGNLD
Ga0187823_1000104233300017993Freshwater SedimentMLEKPELIARLQVGLAASGECSVCHEVFVVKGSSSKPEPLSDRLKQIFEEHVRGVDLSKKTIRQSGNLD
Ga0193723_103773123300019879SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVISSSGNLD
Ga0193755_112150313300020004SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKVIS
Ga0206350_1122644913300020080Corn, Switchgrass And Miscanthus RhizospherePELIAALQVGLVASDECSERHEVLIVKNPSTRPEPLSVRLRQIFEEHVRGIDPSRVDPSKKAIGSNGNLD
Ga0210407_1004077443300020579SoilMAERPELIARFQVGLAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDPSASIYHRIDLSKKVMS
Ga0210401_1053756223300020583SoilQVGLAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHRVALTASIYHSIDLSKKVMS
Ga0210404_1020240013300021088SoilMVEKPELIARLQVGLAASGECSVCHEAFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKTIG
Ga0193719_1038000623300021344SoilLAANIRSLNLWQHQDMNDEPELIATLQVGMAASGECPECHEIFMVKSRSAKPEPLSVRLRQIFEEHVRGVDPSKKAIG
Ga0210383_1088197423300021407SoilMAEKPELIGRLQVGYAASGECSVCHEVFVVRGQSPKPEPLRDRLRQIFEEHVRGVDLSKKVMS
Ga0210384_1001190873300021432SoilMVEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKTIG
Ga0210384_1019212723300021432SoilMAERPELIARFQVGLAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDLSASIYHRIDLSKKVMS
Ga0210410_1016838433300021479SoilMAERPELIARFQVGLAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDLSASIYHGIDLSKKVMS
Ga0210409_1033348423300021559SoilMAERPELIARFQVGLAASGERSAGHEVILVRGQGGKPEQLGDMLKQAFEEHVHSVDLSASIYHRIDLSKKVMS
Ga0207680_1070801713300025903Switchgrass RhizosphereQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLKQIFEEHVRRAELSKKAIDSNGNLD
Ga0207671_1074331033300025914Corn RhizosphereMLMKPELIATLQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLKQIFEEHVRRAELSKKAIDSNGNLD
Ga0207687_1113799923300025927Miscanthus RhizosphereISPLQICGSMRSMLEKPELIARLQVGLAASGECSVCHQVFVVSQSSRPEQLSDRLKQIFEEHIRGAGLSKKAMSQSGNLD
Ga0207686_1019852323300025934Miscanthus RhizosphereMHDEPELIATLQVGMAASGECSEGHEVFMVKSASTKPEQLSNRLRQIFEEHVRGVDPSKVDPSKKAIGSNGNLD
Ga0207704_1052930033300025938Miscanthus RhizosphereMHDEPELIATLQVGMAASGECSECHEVFMVKSASTKPEQLSNRLRQIFEEHVRGVDPSKVDPSKKAIGSNGNLD
Ga0207665_1020884523300025939Corn, Switchgrass And Miscanthus RhizosphereMRGMLEKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGADLSKKAMSQSGNLD
Ga0207665_1094572623300025939Corn, Switchgrass And Miscanthus RhizosphereMLMKPELIATLQVGMAASGECSDCHEVFVVKGSSSKPEPLTDRLKQIFEEHVR
Ga0207703_1204021913300026035Switchgrass RhizosphereEKPELIARLQVGLAASGECSVCHQVFVVSQSSRPEQLSDRLKQIFEEHIRGADLSKKAMSQSGNLD
Ga0207648_1224550613300026089Miscanthus RhizosphereHDDMHDEPELIATLQVGMAASGECSECHEVFMVKSASTKPEQLSNRLRQIFEEHVRGVDPSKVDPSKKAIGSNGNLD
Ga0209839_1000538963300026294SoilMLEKPELVARLQVGMAASGECSVCHEVFVVRGQSSRPEHLSDRLKQIFEEHVRGVDLSKKVMS
Ga0209240_110148323300026304Grasslands SoilMVEKPELIARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHIRSVDLSKKTIS
Ga0257151_102593323300026341SoilMLEKPELIARLQVGLAASGECSVCHEVFAVRESSRPEQLSDQLKQIFEEHVRGVDLSKKVIS
Ga0209331_110826523300027603Forest SoilMLEKPELIARRQVGLAASGECSVCHEVFVVRKSGRPEQLSDRLNQIFEEHVRGVDLSKKTIS
Ga0209736_112512733300027660Forest SoilMAGRPELIARFQVGSAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDLSASIYHCIDLSKKVMS
Ga0209579_1011488523300027869Surface SoilMAEKPELIGRLQVGYAASGECSVCHEVFVVRGQSPRPEPLRDRLRQIFEEHVRGVDLSKKVMS
Ga0209583_1000646533300027910WatershedsMLPKPELIATLQVGMAASGECSACHEVFVVKGSSSKPESLTDRLRQIFEDHVRGADLSKKAIS
Ga0209698_1001410943300027911WatershedsMAEKPELIARFQVGLAASGECSACHEVIVVKGQSSQPEQLGDMLRQAFEEHVRGVDLSASIYRKK
Ga0209526_1004889023300028047Forest SoilMAGRPELIARFQLGLAASGECSACHEVILVRGQGSKPEQLGDMLKQAFEEHVHSVDLSASIYHCIDLSKKVMS
Ga0268266_1043790813300028379Switchgrass RhizosphereIATLQVGMAASGECSNCHEVFVVKGSSSKPEPLTDRLRQIFEEHVRGAELSKKAIS
Ga0268266_1067109923300028379Switchgrass RhizosphereMPMKPELIATLQVGMAASGECSNCHEVFVVKGSSSKPEPLTDRLRQIFEEHVRGAE
Ga0137415_1098307613300028536Vadose Zone SoilGMFEKPELIARLQVGLAASGECSVCHEVFVVRESSRPERLSDRLKQIFEEHVRGVDLSKKVIS
Ga0222749_1009129823300029636SoilMAERPELIARFQVGLAASGECSAGHEVILVRGQGGKPEQLGDMLKQAFEEHVHRVALTASIYHSIDLSKKVMS
(restricted) Ga0255310_1014002813300031197Sandy SoilMLEKPELIAPLQVGLTATGECSVCHEVFVVKGQSNKPEPLSERLKQIFEEHVRGVDLSKKVMS
Ga0170820_1095599413300031446Forest SoilARLQVGLAASGECSVCHEVFVVRESSRPEQLSDRLKQIFEEHVRGVDLSKKTIS
Ga0307469_1004143733300031720Hardwood Forest SoilMLEKPELIAALQVGMSASGECSECHEVFIVKGSSRNPEPLSNRLRQIFEEHVLGIDPSKVDPSKKAIGSNGNLD
Ga0307469_1012821313300031720Hardwood Forest SoilMLEKPELIARLQVGLAASGECSVCHEVFVVRKSSRPEQLSDRLKQIFEEHVRGVELSKKVIS
Ga0307468_10117525513300031740Hardwood Forest SoilMRGMLEKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHIRGAGLSKKAMSQSGNLD
Ga0307468_10237059913300031740Hardwood Forest SoilIATLQVGLAASGECSACHEVFVVQGSTAKPEPLSDRLRQIFEEHVRGAELSEKTMSQNSNLD
Ga0307479_1013615623300031962Hardwood Forest SoilMLEKPELIARLQVGLAASGECSVCHEVFVVKGQSHRPEPLSERLRQIFEEHVRGVDLSKKVMSQSGNLD
Ga0335085_1000450223300032770SoilMGEEPELIATLQVGSAASGECSVCHEVFIVKSEDGRPQQLSDRLRQRFEEHVRGVELSKKAIGPNGNLD
Ga0335069_1019696223300032893SoilMVTFADNIPYANLWQHEPMLEKPELIARLQVGLAASAECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHVRGIDVSKKTIS
Ga0326726_10003571123300033433Peat SoilMPEEPELIATLQVGPAASGECSACHEVFIAKSGKPEHLNDRLRQIFEEHVRSVDLSKKAIGSSGNLD
Ga0326726_1061949623300033433Peat SoilMPEEPELIATLQVGPAASGECSGCHEVFIVKSPSGKPEHLSDRLRQIFEEHVRSVDLSKKAIGSSGNLD
Ga0370501_0016557_1201_14553300034195Untreated Peat SoilVTDHTVTFADNILYTNLWQHERMREKPELIARLQVGLAASGECSVCHEVFVVSQSSRPEQLSDRLKQIFEEHVRGADLSKKAIS

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.