Metagenome / Metatranscriptome Family F092599

Basic Information
Family ID	F092599
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	42 residues
Representative Sequence	VGSDSGGRRRRAFRSLAGNRALVRVLAGYALFVLTEYAVWIAM
Number of Associated Samples	96
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	93.46 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.47

Most Common Taxonomy
Group	Bacteria (53.271 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (39.252 % of family members)
Environment Ontology (ENVO)	Unclassified (45.794 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (43.925 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.11% β-sheet: 0.00% Coil/Unstructured: 47.89%
Feature Viewer

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Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF02687	FtsX	8.41
PF00892	EamA	3.74
PF08241	Methyltransf_11	3.74
PF13561	adh_short_C2	2.80
PF13549	ATP-grasp_5	2.80
PF13560	HTH_31	2.80
PF01266	DAO	2.80
PF02781	G6PD_C	2.80
PF10604	Polyketide_cyc2	2.80
PF00106	adh_short	1.87
PF01243	Putative_PNPOx	1.87
PF00027	cNMP_binding	1.87
PF08352	oligo_HPY	1.87
PF10009	DUF2252	1.87
PF05532	CsbD	0.93
PF00496	SBP_bac_5	0.93
PF00400	WD40	0.93
PF00903	Glyoxalase	0.93
PF03475	3-alpha	0.93
PF03473	MOSC	0.93
PF00111	Fer2	0.93
PF00005	ABC_tran	0.93
PF00355	Rieske	0.93
PF00296	Bac_luciferase	0.93
PF04672	Methyltransf_19	0.93
PF01699	Na_Ca_ex	0.93
PF08240	ADH_N	0.93
PF00291	PALP	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0364	Glucose-6-phosphate 1-dehydrogenase	Carbohydrate transport and metabolism [G]	2.80
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.93
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG2258	N-hydroxylaminopurine reductase YiiM, contains MOSC domain	Defense mechanisms [V]	0.93
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.27 %
Unclassified	root	N/A	46.73 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	53.27 %
Unclassified	root	N/A	46.73 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	53.27 %
Unclassified	root	N/A	46.73 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	41.12 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	37.38 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	28.97 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	3.74 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	6.54 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	4.67 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	3.74 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	2.80 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.87 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.54 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	4.67 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	2.80 %
Ilumatobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae	1.87 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	1.87 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.93 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.54 %
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	4.67 %
unclassified Acidimicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae	1.87 %
Ilumatobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter	1.87 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	1.87 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Actinoplanes	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes	0.93 %
Frigoribacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Frigoribacterium	0.93 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.54 %
Ilumatobacter nonamiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis	1.87 %
Mycobacterium avium complex (MAC)	species group	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium avium complex (MAC)	1.87 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1.87 %
unclassified Frigoribacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Frigoribacterium → unclassified Frigoribacterium	0.93 %
Actinoplanes tereljensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes tereljensis	0.93 %
unclassified Pseudonocardia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia	0.93 %
Pseudonocardia acaciae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acaciae	0.93 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.73 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	6.54 %
Mycobacterium colombiense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium avium complex (MAC) → Mycobacterium colombiense	1.87 %
Ilumatobacter nonamiensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis	1.87 %
Acidimicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1.87 %
Arthrobacter sp. MYb227	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. MYb227	0.93 %
Pseudonocardia sp. CNS-004	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. CNS-004	0.93 %
Frigoribacterium sp. 9N	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Frigoribacterium → unclassified Frigoribacterium → Frigoribacterium sp. 9N	0.93 %
Actinoplanes tereljensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes tereljensis	0.93 %
Pseudonocardia acaciae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acaciae	0.93 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001593\|JGI12635J15846_10525418	Not Available	695	Open in IMG/M
3300005180\|Ga0066685_10482790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	859	Open in IMG/M
3300005332\|Ga0066388_103757860	Not Available	775	Open in IMG/M
3300005577\|Ga0068857_100479481	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1165	Open in IMG/M
3300005764\|Ga0066903_107742936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	553	Open in IMG/M
3300006059\|Ga0075017_101694264	Not Available	500	Open in IMG/M
3300006173\|Ga0070716_100534026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium avium complex (MAC) → Mycobacterium colombiense	871	Open in IMG/M
3300006175\|Ga0070712_100673254	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → Mycobacterium avium complex (MAC) → Mycobacterium colombiense	880	Open in IMG/M
3300009400\|Ga0116854_1123853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. MYb227	613	Open in IMG/M
3300009553\|Ga0105249_11707661	Not Available	702	Open in IMG/M
3300010358\|Ga0126370_12109823	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300010358\|Ga0126370_12153484	Not Available	548	Open in IMG/M
3300010360\|Ga0126372_11938892	Not Available	635	Open in IMG/M
3300010361\|Ga0126378_11447921	Not Available	778	Open in IMG/M
3300010362\|Ga0126377_11653389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	715	Open in IMG/M
3300010371\|Ga0134125_10268741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	1894	Open in IMG/M
3300010375\|Ga0105239_13093935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	542	Open in IMG/M
3300010375\|Ga0105239_13175799	Not Available	535	Open in IMG/M
3300010379\|Ga0136449_100079414	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acaciae	6933	Open in IMG/M
3300010379\|Ga0136449_103289586	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300010379\|Ga0136449_103702098	Not Available	577	Open in IMG/M
3300010868\|Ga0124844_1248625	Not Available	625	Open in IMG/M
3300010876\|Ga0126361_10960084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Frigoribacterium → unclassified Frigoribacterium → Frigoribacterium sp. 9N	1763	Open in IMG/M
3300010880\|Ga0126350_12453112	Not Available	717	Open in IMG/M
3300012199\|Ga0137383_10727080	Not Available	725	Open in IMG/M
3300012357\|Ga0137384_10092855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2514	Open in IMG/M
3300012508\|Ga0157315_1015155	Not Available	747	Open in IMG/M
3300012924\|Ga0137413_11177764	All Organisms → cellular organisms → Bacteria	610	Open in IMG/M
3300012929\|Ga0137404_11280017	Not Available	675	Open in IMG/M
3300012977\|Ga0134087_10284309	Not Available	770	Open in IMG/M
3300013307\|Ga0157372_12500057	Not Available	593	Open in IMG/M
3300016294\|Ga0182041_10463897	Not Available	1091	Open in IMG/M
3300016341\|Ga0182035_11167508	Not Available	687	Open in IMG/M
3300016387\|Ga0182040_10089681	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2054	Open in IMG/M
3300017937\|Ga0187809_10149690	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300017955\|Ga0187817_10463581	All Organisms → cellular organisms → Bacteria	808	Open in IMG/M
3300017974\|Ga0187777_10294037	All Organisms → cellular organisms → Bacteria	1109	Open in IMG/M
3300017974\|Ga0187777_11154815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300018085\|Ga0187772_11403146	Not Available	518	Open in IMG/M
3300020580\|Ga0210403_11184906	Not Available	589	Open in IMG/M
3300020582\|Ga0210395_10847804	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	680	Open in IMG/M
3300021407\|Ga0210383_11150477	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	654	Open in IMG/M
3300025898\|Ga0207692_10606309	All Organisms → cellular organisms → Bacteria	704	Open in IMG/M
3300025915\|Ga0207693_10940115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	662	Open in IMG/M
3300025916\|Ga0207663_10978014	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300025929\|Ga0207664_11601782	Not Available	573	Open in IMG/M
3300026095\|Ga0207676_10229460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1659	Open in IMG/M
3300026550\|Ga0209474_10319424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	897	Open in IMG/M
3300027775\|Ga0209177_10170681	Not Available	753	Open in IMG/M
3300028380\|Ga0268265_10295182	Not Available	1457	Open in IMG/M
3300030494\|Ga0310037_10307933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → unclassified Pseudonocardia → Pseudonocardia sp. CNS-004	673	Open in IMG/M
3300030743\|Ga0265461_11174374	Not Available	788	Open in IMG/M
3300031543\|Ga0318516_10613279	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis	621	Open in IMG/M
3300031564\|Ga0318573_10211189	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1030	Open in IMG/M
3300031572\|Ga0318515_10252379	Not Available	946	Open in IMG/M
3300031680\|Ga0318574_10116249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1497	Open in IMG/M
3300031682\|Ga0318560_10073592	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1729	Open in IMG/M
3300031708\|Ga0310686_104941074	Not Available	776	Open in IMG/M
3300031713\|Ga0318496_10365316	Not Available	797	Open in IMG/M
3300031751\|Ga0318494_10423632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	773	Open in IMG/M
3300031765\|Ga0318554_10040905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2517	Open in IMG/M
3300031770\|Ga0318521_10809159	All Organisms → cellular organisms → Bacteria	571	Open in IMG/M
3300031778\|Ga0318498_10179663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	962	Open in IMG/M
3300031778\|Ga0318498_10196127	All Organisms → cellular organisms → Bacteria → Terrabacteria group	916	Open in IMG/M
3300031779\|Ga0318566_10398524	Not Available	677	Open in IMG/M
3300031781\|Ga0318547_10217609	Not Available	1145	Open in IMG/M
3300031782\|Ga0318552_10334971	Not Available	770	Open in IMG/M
3300031782\|Ga0318552_10509441	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Ilumatobacteraceae → Ilumatobacter → Ilumatobacter nonamiensis	614	Open in IMG/M
3300031792\|Ga0318529_10142801	Not Available	1098	Open in IMG/M
3300031795\|Ga0318557_10097573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1297	Open in IMG/M
3300031798\|Ga0318523_10268597	All Organisms → cellular organisms → Bacteria → Proteobacteria	852	Open in IMG/M
3300031799\|Ga0318565_10027750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2542	Open in IMG/M
3300031805\|Ga0318497_10787128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	533	Open in IMG/M
3300031821\|Ga0318567_10747161	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	555	Open in IMG/M
3300031845\|Ga0318511_10183641	Not Available	925	Open in IMG/M
3300031846\|Ga0318512_10180916	Not Available	1026	Open in IMG/M
3300031893\|Ga0318536_10571699	All Organisms → cellular organisms → Bacteria → Terrabacteria group	566	Open in IMG/M
3300031910\|Ga0306923_11957584	Not Available	596	Open in IMG/M
3300031910\|Ga0306923_12396763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	523	Open in IMG/M
3300031912\|Ga0306921_10269525	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	1994	Open in IMG/M
3300031912\|Ga0306921_11424901	All Organisms → cellular organisms → Bacteria	761	Open in IMG/M
3300031912\|Ga0306921_12068871	Not Available	604	Open in IMG/M
3300031941\|Ga0310912_10899655	Not Available	681	Open in IMG/M
3300032001\|Ga0306922_11136917	Not Available	798	Open in IMG/M
3300032008\|Ga0318562_10481572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	720	Open in IMG/M
3300032009\|Ga0318563_10138019	Not Available	1304	Open in IMG/M
3300032039\|Ga0318559_10040314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1915	Open in IMG/M
3300032043\|Ga0318556_10261224	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Actinoplanes → Actinoplanes tereljensis	904	Open in IMG/M
3300032063\|Ga0318504_10105459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1266	Open in IMG/M
3300032064\|Ga0318510_10299650	Not Available	670	Open in IMG/M
3300032065\|Ga0318513_10399933	Not Available	670	Open in IMG/M
3300032066\|Ga0318514_10336982	Not Available	798	Open in IMG/M
3300032067\|Ga0318524_10344929	Not Available	773	Open in IMG/M
3300032068\|Ga0318553_10109915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1410	Open in IMG/M
3300032076\|Ga0306924_11510707	Not Available	712	Open in IMG/M
3300032076\|Ga0306924_11559015	Not Available	698	Open in IMG/M
3300032261\|Ga0306920_102936887	Not Available	645	Open in IMG/M
3300032782\|Ga0335082_11536489	All Organisms → cellular organisms → Bacteria → Terrabacteria group	537	Open in IMG/M
3300032828\|Ga0335080_10091208	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → unclassified Acidimicrobiaceae → Acidimicrobiaceae bacterium	3379	Open in IMG/M
3300032896\|Ga0335075_10483678	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1274	Open in IMG/M
3300032897\|Ga0335071_11083668	Not Available	747	Open in IMG/M
3300032954\|Ga0335083_11499847	Not Available	512	Open in IMG/M
3300033158\|Ga0335077_11558185	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300033289\|Ga0310914_10051859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3385	Open in IMG/M
3300033290\|Ga0318519_10125441	Not Available	1410	Open in IMG/M
3300033806\|Ga0314865_148090	Not Available	624	Open in IMG/M
3300034268\|Ga0372943_0976188	Not Available	564	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	92.52%
Host-Associated	Host-Associated	7.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.72%
Plants	Host-Associated → Plants	7.48%
Aquatic	Environmental → Aquatic	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.72%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.74%
Freshwater	Environmental → Aquatic → Freshwater	1.87%
Sediment	Environmental → Aquatic → Sediment	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	9.35%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.74%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	50.47%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	3.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	3.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.74%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	39.25%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.21%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	4.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.74%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.74%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.87%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.87%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009400	Soil microbial community of the Robinson Ridge, Antarctica. Combined Assembly of Gp0139162, Gp0138857, Gp0138858	Environmental	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300010876	Boreal forest soil eukaryotic communities from Alaska, USA - W5-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300010880	Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017937	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300026095	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300030743	Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VCO Co-assembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033806	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_20	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.47
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.47
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092599

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12635J15846_105254182	3300001593	Forest Soil	VGGDSGGRLHAFRSLAANAALVRILAAYALFVLTE
Ga0066685_104827901	3300005180	Soil	VGTDSGGRRRRAFGSLAGNKALLRVLAAYVLFILAENSVWIA
Ga0066388_1037578602	3300005332	Tropical Forest Soil	VGSDSGGRRRHAFGSLAVNRALVRVLAGYVLFVLTEYSVWIAM
Ga0068857_1004794811	3300005577	Corn Rhizosphere	MGGDRGGRRRHAFSSLAGNTALLRVLAAYLLFILTEYAVWIAMLVFAYNRG
Ga0066903_1077429361	3300005764	Tropical Forest Soil	VGSDSGAHRMHAFRSLTGNRALLRVLGGYALFTLNEYAVWIAMLVY
Ga0075017_1016942641	3300006059	Watersheds	VGGDSDARLGAFRSLVGNRALVRVVGGYALFAVTQY
Ga0070716_1005340263	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MGGDHSGRRRRAFSSLAGNTALLRVLAAYLLFILTE
Ga0070712_1006732541	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGGDHSGRRRRAFSSLAGNTALLRVLAAYLLFILTEYAV
Ga0116854_11238531	3300009400	Soil	VGGDSGGGRRLRALRSLAGNRALVRVLGGYVLFILTEYSVWIA
Ga0105249_117076612	3300009553	Switchgrass Rhizosphere	MGGDRSGRRRRAFSSLAGNTALLRVLAAYLLFILT
Ga0126370_121098231	3300010358	Tropical Forest Soil	VGGNSGGRRLRAFGSLAGNGALLRVLAAYMMFILTEYAV
Ga0126370_121534841	3300010358	Tropical Forest Soil	VGSDSGGRRRRAFRSLAGNRALVRVLAGYALFVLTEYAVWIAM
Ga0126372_119388921	3300010360	Tropical Forest Soil	VEGGSASGRLGAFRSLTGNRPLLRVLAGYALFILTEYAVWIAMLV
Ga0126378_114479212	3300010361	Tropical Forest Soil	VGSDSGARYLHAFRSLTGNRTLLRVLGGYALFTLN
Ga0126377_116533892	3300010362	Tropical Forest Soil	MVAGDSDARRLRAFRSLAGNRALLRVLGAYTLFILT
Ga0134125_102687411	3300010371	Terrestrial Soil	MGGDRSGRRRRAFSSLAGNTALLRVLAAYLLFILTEYAVWIAMLV
Ga0105239_130939352	3300010375	Corn Rhizosphere	VGGDSGARRLRAFRSLAANTALLRVLGGYTLFILTEYS
Ga0105239_131757991	3300010375	Corn Rhizosphere	MDSGRRLRAFGSLAGNRALLRVLAAYLLFILTEYAVWIAML
Ga0136449_1000794141	3300010379	Peatlands Soil	LVGGDSGGRLHAFRSLAGNRALVRVLAGYALFVLTEYSAWIAML
Ga0136449_1032895862	3300010379	Peatlands Soil	VGGDSGGGRLHAFRSLAGNRALLRVLCAYGLFILTECAVWLAMIIVAYSHGG
Ga0136449_1037020982	3300010379	Peatlands Soil	VSGDSSGRLHAFRSLAGNRTLVRILAGYALFDLTEYSA
Ga0124844_12486252	3300010868	Tropical Forest Soil	MGGDRSGRRRRAFSSLAGNPALLRVLAAYLLFILTEYAVWIAMLVYAYNR
Ga0126361_109600841	3300010876	Boreal Forest Soil	MQGGARRAFRSLAGNRALVRVLAAYVMFGLTEAAVWIAML
Ga0126350_124531121	3300010880	Boreal Forest Soil	MDSGGPRGGRGRAFRSLTGNRALGRVLAAYVMFTLSEDAVWIAMLV
Ga0137383_107270801	3300012199	Vadose Zone Soil	MDSGRRRLRAFGSLAGNRALLRVLAAYLLFILTE*
Ga0137384_100928551	3300012357	Vadose Zone Soil	VGGDSGARRLGAFRSLAGNRALVRVVGGYALFILTEYSVWVAML
Ga0157315_10151551	3300012508	Arabidopsis Rhizosphere	MDGDRSGRRRHAFSSLAANTALLRVLAAYLLFILTEYAVWIAM
Ga0137413_111777641	3300012924	Vadose Zone Soil	VRDDTGRRRRRAFSSLTGNRALLRVLAAYLLFILTEYA
Ga0137404_112800171	3300012929	Vadose Zone Soil	MDSGGRRRRAFSSLAGNTALLGVLAAYLLFILTEYAVWIAMLVFAYN
Ga0134087_102843092	3300012977	Grasslands Soil	VLVGTDSGGRRRRAFGSLAGNKALLRVLAAYVLFILAENSVWIAM
Ga0157372_125000572	3300013307	Corn Rhizosphere	VGTDSGGRRRRAFGSVAGNKALLRVLVAYVLFILTE
Ga0182041_104638971	3300016294	Soil	VLVGSDSGSRRHAFRSLAGNRALLRVLAGYGLFVLTEYSVWIGMLVFAYSRG
Ga0182035_111675082	3300016341	Soil	VGGDSGVGGLHAFRSLVANKALLRVLGGYALFTLTEYSAWIAI
Ga0182040_100896814	3300016387	Soil	VGGDSGGRRLHAFRSLAGNRALLSVLAAYVMFILAEYAAWIAMLVYAY
Ga0187809_101496902	3300017937	Freshwater Sediment	VGGDSGGRRLHAFRSLAGNRVLVRVLSGYGLFILTEYAVWLAMII
Ga0187817_104635811	3300017955	Freshwater Sediment	VGDGSSARRLHTFRSLAANHALLRVLGGYGLFVLTEYA
Ga0187777_102940372	3300017974	Tropical Peatland	VGGNSGGRRVRAFGSLAGNGALLRVLAGYVMFILAEYAVWIA
Ga0187777_111548151	3300017974	Tropical Peatland	VGSDPGGRRLHAFRSLAGNRALLRVLVAYSLFTLTEYSVWIAM
Ga0187772_114031461	3300018085	Tropical Peatland	VGSGSGGRLHAFRSLAGNRALLRVLAGYALFVLTEYSVWIAMLIYAFS
Ga0210403_111849062	3300020580	Soil	MDSGRRRLRAFGSLAGNRALLRVLAAYLLFILTEY
Ga0210395_108478041	3300020582	Soil	MDSGRRRLRAFGSLAGNRALLRVLAAYLLFILTEYAVWIAMLV
Ga0210383_111504772	3300021407	Soil	MGGDSGTGGLHAVRSLAANGALLRVLVGYALFILTEYSVWIAMMVYAYSRG
Ga0207692_106063092	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MGGDHSGRRRRAFSSLAGNTALLRVLAAYLLFILTEYAVWIAMLVFAYNR
Ga0207693_109401151	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MGGDHSGRRRRAFSSLAGNTALLRVLAAYLLFILTEYAVWIAM
Ga0207663_109780143	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MDSGRRRLRAFGSLAGNRALLRVLAAYLLFILTEYAVWI
Ga0207664_116017821	3300025929	Agricultural Soil	MDSGRRRLRAFGSLAGNRALLRVLAAYLLFILTEYAVWIAML
Ga0207676_102294601	3300026095	Switchgrass Rhizosphere	VGSDSGGRRRAFRSLTRTRALLRVLGGYALFTLNEYAVWIAMLV
Ga0209474_103194242	3300026550	Soil	VGGDSGARRLRAFRSLAGNTALLRVLGGYTLFILT
Ga0209177_101706811	3300027775	Agricultural Soil	MGGDRSGCRRHAFSSLAGNTALLRVLAAYLLFILTEY
Ga0268265_102951821	3300028380	Switchgrass Rhizosphere	MGGDRGGRRRHAFSSLAGNTALLRVLAAYLLFILTEYAVWIAM
Ga0310037_103079331	3300030494	Peatlands Soil	LVGGDSGGRLHAFRSLAGNRALVRVLAGYALFVLTEYSAWIAMLV
Ga0265461_111743742	3300030743	Soil	VGGDSGGRLHAFRSLAANGALVRILAAYALFVLTECTAWIAMLVFAY
Ga0318516_106132792	3300031543	Soil	VGGNSGGRRLRAFGSLAGNSALLRVLAAYVMFILTEYAVWIAMLV
Ga0318573_102111892	3300031564	Soil	VDSDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSVWIAM
Ga0318515_102523792	3300031572	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAILV
Ga0318574_101162493	3300031680	Soil	VDSDPGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSVWIAMLVYAYG
Ga0318560_100735921	3300031682	Soil	VGGDSGGRRLHAFRSLAGNRALLSVLAAYVMFILAEYAA
Ga0310686_1049410741	3300031708	Soil	VGSSAGARRLHAFRSLADNKALMRALAAYALFVLAEYSVWIAMLVF
Ga0318496_103653161	3300031713	Soil	VDTDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLT
Ga0318494_104236321	3300031751	Soil	VGDGSRARLHAFRSLPVNRVLLRVLAGYALFVLTEYAVWIAM
Ga0318554_100409054	3300031765	Soil	VGGDSGGRRLHAFRSLAGNRALLSVLAAYVMFILAEYAAWIAMLVYAYS
Ga0318521_108091592	3300031770	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAILVYAY
Ga0318498_101796632	3300031778	Soil	VGDGSRARLHAFRSLPVNRVLLRVLAGYALFVLTEYA
Ga0318498_101961271	3300031778	Soil	VGSDSGSRRHAFRSLAGNGALVRVLTGYLLFVLTEYSVWIAMLVFAYS
Ga0318566_103985242	3300031779	Soil	VGGDSGVGRLHAFRSLVANKALLRVRGGYALFTLTEYSVWIAILVYAY
Ga0318547_102176092	3300031781	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAILVYAYSR
Ga0318552_103349712	3300031782	Soil	VDTDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEY
Ga0318552_105094411	3300031782	Soil	VGGNSGGRRLRAFGSLAGNGALLRVLAAYMVFILTEYAVWIAM
Ga0318529_101428011	3300031792	Soil	VGGDSGAGGLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAILVYAYS
Ga0318557_100975731	3300031795	Soil	VDTDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTE
Ga0318523_102685972	3300031798	Soil	MSSDSGGRRRRAFRSLAGNRALVRVLAGYALFVLTEYAVWI
Ga0318565_100277504	3300031799	Soil	VGNDSSGRRRRAFRSLAGNSALLRVLAGYVLFTLTEYSV
Ga0318497_107871281	3300031805	Soil	VGSDSSGRRWRAFRSLAGNSALLRVLAGYVLFTLTEYSVWI
Ga0318567_107471612	3300031821	Soil	VDTDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSVWIAMLV
Ga0318511_101836411	3300031845	Soil	VDSDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSVWIAML
Ga0318512_101809161	3300031846	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAI
Ga0318536_105716991	3300031893	Soil	VSSDSGSRRHAFRSLAGNGALVRVLTGYLLFVLTEYSVWIA
Ga0306923_119575841	3300031910	Soil	VDSDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSV
Ga0306923_123967631	3300031910	Soil	VSSDSGSRRHAFRSLAGNGALVRVLTGYLLFVLTEYSVWIAML
Ga0306921_102695253	3300031912	Soil	VGGDSGGRLHAFRSLAGNRALVRVLAGYALFVLTEYSAWIAVLVFAYSRGG
Ga0306921_114249012	3300031912	Soil	MSSDSGGRRRRAFRSLAGNRALVRVLAGYALFVLTEYAVWIAML
Ga0306921_120688711	3300031912	Soil	VDSDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSVW
Ga0310912_108996551	3300031941	Soil	VDTDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLAEYSVWIAMLVY
Ga0306922_111369172	3300032001	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAILVYAYS
Ga0318562_104815722	3300032008	Soil	MGSDSGGRRWHAFRSLAGNSALLRVLAGYVLFTLTEYSVWIAMLVYAYSR
Ga0318563_101380192	3300032009	Soil	VGGDSGGRLHAFRSLAGNRALVRVLAGYALFVLTE
Ga0318559_100403144	3300032039	Soil	VGGDSGGRRLHAFRSLAGNRALLSVLAAYVMFILAEYAAWIA
Ga0318556_102612242	3300032043	Soil	VGSDSSGRRWRAFRSLAGNSALLRVLAGYVLFTLTEYSVWIA
Ga0318504_101054592	3300032063	Soil	VDSDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSVWIAMLVYAYG
Ga0318510_102996502	3300032064	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSV
Ga0318513_103999331	3300032065	Soil	VDTDSGGRRRHAFRSLAGNRVLLRVLVGYGLFVLTEYSVWIAMLVYAYG
Ga0318514_103369822	3300032066	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAILVY
Ga0318524_103449291	3300032067	Soil	VAGDSGERRLSAFRSLASSSALLRVLAAYVMFILTEYAVWI
Ga0318553_101099153	3300032068	Soil	VSSDSGSRRHAFRSLAGNGALVRVLTGYLLFVLTEYSVWIAMLVFAYS
Ga0306924_115107072	3300032076	Soil	VGGDSGVGRLHAFRSLVANKALLRVLGGYALFTLTEYSVWIAILVYAYSRGGA
Ga0306924_115590153	3300032076	Soil	VKTSRHRLRAFSSLAGNRALLRVLAAYLLFILTEYAVWIAMLVFA
Ga0306920_1029368871	3300032261	Soil	VKTSRHRLRAFSSLAGNRALLRVLAAYLLFILTEYAVWIAM
Ga0335082_115364891	3300032782	Soil	VGGDSGGRLHAFRSLAGNRALVRVLAGYALFVLTEY
Ga0335080_100912084	3300032828	Soil	MGDDRSGRRRRAFGSLAGNTALLRVLAAYLLFILTEYAV
Ga0335075_104836782	3300032896	Soil	MSGGRSQRAFSSLAGNGALLRVLTAYLLFTLTENAVW
Ga0335071_110836682	3300032897	Soil	MGGDSGGRLHAFRSLAGNRALVRVLAGYALFVLTEYSAWIAI
Ga0335083_114998471	3300032954	Soil	VGDGSSARRLYTFHSLAANRALLRVLGGYGLFVLTEYAVWIA
Ga0335077_115581852	3300033158	Soil	VGGDSGGRRLHAFRSLAGNRALMRVLGGYALFILTECAVWLAMIIFA
Ga0310914_100518591	3300033289	Soil	VGGGRGGRRRHAFRSLAGNRALVRVLGGYALFILTECAVWIA
Ga0318519_101254411	3300033290	Soil	VLVGSDSGSRRHAFRSLAGNRALLRVLAGYGLFVLTEYSVWIGML
Ga0314865_148090_494_622	3300033806	Peatland	MGGNSGGRLHAFRSLTGNRALVRVLTGYALFVLTEYSAWIAVL
Ga0372943_0976188_449_562	3300034268	Soil	VRDDSGGRRLRAFRSLAGNRALLRVLAAYLLFILTEYA

Hidden Markov Model


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