Metagenome Family F092570

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092570
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	55 residues
Representative Sequence	MSNRPARITQAEIERAIRAAKKAGAAEVEVKIGDEASIRIPLVPDRPLAESEEIVL
Number of Associated Samples	74
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	81.31 %
% of genes near scaffold ends (potentially truncated)	28.04 %
% of genes from short scaffolds (< 2000 bps)	85.05 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (85.981 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.103 % of family members)
Environment Ontology (ENVO)	Unclassified (23.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (71.028 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 16.67% β-sheet: 14.29% Coil/Unstructured: 69.05%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00589	Phage_integrase	13.08
PF01870	Hjc	2.80
PF13481	AAA_25	1.87
PF01807	zf-CHC2	0.93
PF01593	Amino_oxidase	0.93
PF05272	VirE	0.93
PF06080	DUF938	0.93
PF03869	Arc	0.93
PF02653	BPD_transp_2	0.93
PF00884	Sulfatase	0.93
PF08774	VRR_NUC	0.93
PF09849	DUF2076	0.93
PF13148	DUF3987	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1591	Holliday junction resolvase Hjc, archaeal type	Replication, recombination and repair [L]	2.80
COG0358	DNA primase (bacterial type)	Replication, recombination and repair [L]	0.93
COG5545	Predicted P-loop ATPase and inactivated derivatives	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	85.98 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	83.18 %
Unclassified	root	N/A	14.02 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	80.37 %
Unclassified	root	N/A	14.02 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24.30 %
Unclassified	root	N/A	14.02 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	3.74 %
Nevskiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales	1.87 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.48 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.80 %
Sinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae	1.87 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1.87 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.61 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.80 %
Panacagrimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas	1.87 %
Aminobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter	1.87 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1.87 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.80 %
Panacagrimonas perspica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	1.87 %
Aminobacter carboxidus group	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → Aminobacter carboxidus group	1.87 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1.87 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	14.02 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2.80 %
Aminobacter lissarensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → Aminobacter carboxidus group → Aminobacter lissarensis	1.87 %
Panacagrimonas perspica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	1.87 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1.87 %
Bradyrhizobium sp. sBnM-33	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459003\|FZN2CUW02GR0T9	Not Available	505	Open in IMG/M
2170459022\|GZEQPF101CFP6G	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	504	Open in IMG/M
3300001471\|JGI12712J15308_10014718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2082	Open in IMG/M
3300004092\|Ga0062389_102580646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	675	Open in IMG/M
3300005332\|Ga0066388_102500329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	939	Open in IMG/M
3300005437\|Ga0070710_11182935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	564	Open in IMG/M
3300005457\|Ga0070662_101367715	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300005602\|Ga0070762_11324136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	500	Open in IMG/M
3300005764\|Ga0066903_102522347	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	996	Open in IMG/M
3300005764\|Ga0066903_103764020	Not Available	815	Open in IMG/M
3300005764\|Ga0066903_104177177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	773	Open in IMG/M
3300005764\|Ga0066903_104221088	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300005764\|Ga0066903_106160232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	627	Open in IMG/M
3300005764\|Ga0066903_106367377	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	616	Open in IMG/M
3300005764\|Ga0066903_108071438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	540	Open in IMG/M
3300006059\|Ga0075017_100420573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1005	Open in IMG/M
3300006173\|Ga0070716_101161669	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	618	Open in IMG/M
3300006844\|Ga0075428_100972287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	899	Open in IMG/M
3300006854\|Ga0075425_100625900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1238	Open in IMG/M
3300006871\|Ga0075434_100062653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3702	Open in IMG/M
3300006904\|Ga0075424_102479952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	543	Open in IMG/M
3300007076\|Ga0075435_100295594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	1384	Open in IMG/M
3300007982\|Ga0102924_1011098	All Organisms → cellular organisms → Bacteria	7610	Open in IMG/M
3300009100\|Ga0075418_12222901	Not Available	598	Open in IMG/M
3300009147\|Ga0114129_11864071	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	730	Open in IMG/M
3300009147\|Ga0114129_13292668	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	523	Open in IMG/M
3300009162\|Ga0075423_10253210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1845	Open in IMG/M
3300009162\|Ga0075423_11565681	Not Available	708	Open in IMG/M
3300009698\|Ga0116216_10048797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2614	Open in IMG/M
3300010366\|Ga0126379_12016936	Not Available	679	Open in IMG/M
3300010366\|Ga0126379_12190330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300010375\|Ga0105239_10708479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → Aminobacter carboxidus group → Aminobacter lissarensis	1151	Open in IMG/M
3300010376\|Ga0126381_104696563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	526	Open in IMG/M
3300010379\|Ga0136449_100872295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1472	Open in IMG/M
3300010379\|Ga0136449_101594356	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	992	Open in IMG/M
3300012209\|Ga0137379_11134714	Not Available	688	Open in IMG/M
3300012986\|Ga0164304_11064913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	645	Open in IMG/M
3300012989\|Ga0164305_11613199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	579	Open in IMG/M
3300012989\|Ga0164305_12144566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	513	Open in IMG/M
3300016294\|Ga0182041_10699390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	899	Open in IMG/M
3300016371\|Ga0182034_11057359	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	703	Open in IMG/M
3300016404\|Ga0182037_11848102	Not Available	540	Open in IMG/M
3300016422\|Ga0182039_10103708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2106	Open in IMG/M
3300016422\|Ga0182039_11728327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	573	Open in IMG/M
3300016422\|Ga0182039_11908939	Not Available	545	Open in IMG/M
3300017822\|Ga0187802_10414066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	534	Open in IMG/M
3300017822\|Ga0187802_10450890	Not Available	510	Open in IMG/M
3300017943\|Ga0187819_10274781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	982	Open in IMG/M
3300017961\|Ga0187778_11349788	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300017970\|Ga0187783_10484494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	897	Open in IMG/M
3300017970\|Ga0187783_10501108	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	880	Open in IMG/M
3300017973\|Ga0187780_10116543	Not Available	1844	Open in IMG/M
3300017974\|Ga0187777_10288156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1121	Open in IMG/M
3300017974\|Ga0187777_11386926	Not Available	518	Open in IMG/M
3300018085\|Ga0187772_10831189	Not Available	668	Open in IMG/M
3300018086\|Ga0187769_10024640	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4030	Open in IMG/M
3300018086\|Ga0187769_10454199	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300018086\|Ga0187769_10911362	Not Available	665	Open in IMG/M
3300018090\|Ga0187770_10972639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	682	Open in IMG/M
3300020579\|Ga0210407_11221841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	565	Open in IMG/M
3300020580\|Ga0210403_11376318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	536	Open in IMG/M
3300020582\|Ga0210395_10226106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Aminobacter → Aminobacter carboxidus group → Aminobacter lissarensis	1405	Open in IMG/M
3300020582\|Ga0210395_10339774	Not Available	1129	Open in IMG/M
3300020582\|Ga0210395_10656369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	786	Open in IMG/M
3300020583\|Ga0210401_10058415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3635	Open in IMG/M
3300020583\|Ga0210401_10153845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	2149	Open in IMG/M
3300020583\|Ga0210401_10384255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1266	Open in IMG/M
3300020583\|Ga0210401_10512029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1063	Open in IMG/M
3300020583\|Ga0210401_10780824	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	815	Open in IMG/M
3300021168\|Ga0210406_10167850	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1835	Open in IMG/M
3300021178\|Ga0210408_10220831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1508	Open in IMG/M
3300021180\|Ga0210396_10047663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3932	Open in IMG/M
3300021180\|Ga0210396_10919792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300021401\|Ga0210393_11242914	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	599	Open in IMG/M
3300021405\|Ga0210387_11005595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	730	Open in IMG/M
3300021407\|Ga0210383_10333631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1306	Open in IMG/M
3300021432\|Ga0210384_11240718	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300021432\|Ga0210384_11341132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	620	Open in IMG/M
3300021474\|Ga0210390_10947902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. sBnM-33	706	Open in IMG/M
3300021479\|Ga0210410_10062144	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3264	Open in IMG/M
3300021479\|Ga0210410_10177976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Sinobacteraceae → Panacagrimonas → Panacagrimonas perspica	1901	Open in IMG/M
3300021479\|Ga0210410_10276413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1507	Open in IMG/M
3300021560\|Ga0126371_11766335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	741	Open in IMG/M
3300022557\|Ga0212123_10020321	All Organisms → cellular organisms → Bacteria	7618	Open in IMG/M
3300024227\|Ga0228598_1128754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	515	Open in IMG/M
3300025972\|Ga0207668_11239909	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300027652\|Ga0209007_1127836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	635	Open in IMG/M
3300027911\|Ga0209698_11211984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	555	Open in IMG/M
3300030494\|Ga0310037_10233870	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	803	Open in IMG/M
3300031573\|Ga0310915_10061912	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2443	Open in IMG/M
3300031708\|Ga0310686_100907254	All Organisms → cellular organisms → Bacteria → Proteobacteria	17403	Open in IMG/M
3300031708\|Ga0310686_106318151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3316	Open in IMG/M
3300031708\|Ga0310686_111068984	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	736	Open in IMG/M
3300031708\|Ga0310686_111939133	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2732	Open in IMG/M
3300031753\|Ga0307477_10556812	Not Available	776	Open in IMG/M
3300031879\|Ga0306919_10170662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1600	Open in IMG/M
3300031890\|Ga0306925_11125168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	792	Open in IMG/M
3300031912\|Ga0306921_11525335	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	729	Open in IMG/M
3300031942\|Ga0310916_11161187	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	640	Open in IMG/M
3300031942\|Ga0310916_11274082	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300031947\|Ga0310909_11267553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300032043\|Ga0318556_10657753	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	546	Open in IMG/M
3300032059\|Ga0318533_10470663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	920	Open in IMG/M
3300032160\|Ga0311301_10300861	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2570	Open in IMG/M
3300032160\|Ga0311301_11450415	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	851	Open in IMG/M
3300032261\|Ga0306920_103011548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	636	Open in IMG/M
3300032892\|Ga0335081_11888552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	642	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.92%
Host-Associated	Host-Associated	13.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	79.44%
Plants	Host-Associated → Plants	13.08%
Aquatic	Environmental → Aquatic	7.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.44%
Rhizosphere	Host-Associated → Plants → Rhizosphere	13.08%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.87%
Sediment	Environmental → Aquatic → Sediment	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.07%
Loam	Environmental → Terrestrial → Soil → Loam	12.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.74%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	37.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.76%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.21%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.28%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.80%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.10%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.35%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.54%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.61%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.80%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.87%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.93%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459003	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect MP BIO 1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459022	Grass soil microbial communities from Rothamsted Park, UK - FA2 (control condition)	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009698	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027652	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300030494	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E4A_11615690	2170459003	Grass Soil	VSNRPARITQAEIERAIRAAKKTGVREVVVKIGDEVSIHMPLVPDQPVAESEEIVL
FA2_00358700	2170459022	Grass Soil	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRIPLGPDRPVAEGEEIVL
JGI12712J15308_100147184	3300001471	Forest Soil	MSNRPARISQAEIERAIRAARKAGATEVELKIGVDVSIRIRIPLAPDRPVAESEEIVL*
Ga0062389_1025806461	3300004092	Bog Forest Soil	MSNRPARITQAEIERAIRAAKKAGAAEVEVKIGDEASIRIPLVPDRPLAESEEIVL*
Ga0066388_1025003291	3300005332	Tropical Forest Soil	MSNRPARITQAEIERAIRAAKKAGATEVEVKMSDGVSIRIPLVPDKPIAESEEIVL*
Ga0070710_111829351	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	LSNRPARITQAEIERAIRAAKKAGVTEIELKIGDNATLRIPLTSDKSVAETEEIVL*
Ga0070662_1013677152	3300005457	Corn Rhizosphere	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRIPLAPDRPVAEGEEIVL*
Ga0070762_113241362	3300005602	Soil	MSNRPARISQAEIERAIRAAKKAGATEVEVKMGDGVSIRIPLGPDRPVAEGEEIVL*
Ga0066903_1025223473	3300005764	Tropical Forest Soil	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRIPLVADQPVAENREIVL*
Ga0066903_1037640203	3300005764	Tropical Forest Soil	MSNRPARITQAEIERAIRAAKRAGLTEVEVRLGDEASIRIPLAPEKPIADDGEIIL*
Ga0066903_1041771772	3300005764	Tropical Forest Soil	VSNRPARITQVEIERAIRAAKKVGIPVVEVKVGDAVIRIPLVSDQPVAEPEEVVL*
Ga0066903_1042210881	3300005764	Tropical Forest Soil	MSNRPARITQAEIERAIRAAKKAGLSEVEVRLGDEASIRIPLAPEKPIADAGEIIL*
Ga0066903_1061602322	3300005764	Tropical Forest Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVKIGCEASIRIPLLPEKPV
Ga0066903_1063673772	3300005764	Tropical Forest Soil	VSNRPARITQAEIERVIRAAKKAGLTEVEVRLGDEASIRIPLAPDKPIAEAEEIV
Ga0066903_1080714382	3300005764	Tropical Forest Soil	MSNRPARITQAEIERAIRAAKKAGATEVEVKMSDGVSIRIPLVPDRPVAESEEIVL*
Ga0075017_1004205732	3300006059	Watersheds	MSNRPARITQAEIERAIRAAKKAGVTVVEVRIGDEASIRIPLVADKPIAESDEVVL*
Ga0070716_1011616692	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	LSNRPARITQAEIERAIRAAKKAGVTEIELRIGDNATVRIPLTSDKSVAETEEIVL*
Ga0075428_1009722872	3300006844	Populus Rhizosphere	ARITQAEIERAIRAAKRAGLTEVEVRFGDEASIRIPLAPEKPIADAGEIIL*
Ga0075425_1006259003	3300006854	Populus Rhizosphere	MSNRPARITQAEIERAIRAAKRAGLTEVEVRFGDEASIRIPLAPEKPIADAGEIIL*
Ga0075434_1000626537	3300006871	Populus Rhizosphere	EAVGCPAHVAGNRVQGDGMSNRPARITQAEIERAIRAAKRAGLTEVEVRLGDEASIRIPLAPEKPIADAGEIIL*
Ga0075424_1024799521	3300006904	Populus Rhizosphere	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRISLATDKPVAES
Ga0075435_1002955943	3300007076	Populus Rhizosphere	RITQAEIERAIRAAKRAGLTEVEVRLGDEASIRIPLAPEKPIADAGEIIL*
Ga0102924_101109810	3300007982	Iron-Sulfur Acid Spring	MSNRPARITQAEIERAIRAARKAGLTEVEVRIGDDTSIRIPLAPEQAIAESEEIIL*
Ga0075418_122229012	3300009100	Populus Rhizosphere	MSNRPARITQAEIERAIRAAKKAGLTEVEVRLGDEASIRIPLAPEKPIADAGEIIL*
Ga0114129_118640712	3300009147	Populus Rhizosphere	MSNRPARITQAEIERAIRAAKRAGLTEVEVRLGDEASIRIPLAPEKPIADAGEIIL*
Ga0114129_132926682	3300009147	Populus Rhizosphere	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRISLATDKPVAESEEIVL*
Ga0075423_102532102	3300009162	Populus Rhizosphere	MSNRSARITQAEIERAIRAAKRAGLTEVEVRFGDEASIRIPLAPEKPIADAGEIIL*
Ga0075423_115656812	3300009162	Populus Rhizosphere	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRISLATDKPVAESE
Ga0116216_100487973	3300009698	Peatlands Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVRIGDEASIRIPLAPEKPIAEPEEIIV*
Ga0126379_120169362	3300010366	Tropical Forest Soil	MSDRPARISQAEIERAIRAAKKAGATEVEVKMSDGVSIRIPLVPDRPVAESEEIVL*
Ga0126379_121903302	3300010366	Tropical Forest Soil	LHVDRQERGMSNRRARTTQAEIERVIRAAKKAGATEVEVKMSDGVSIRIPLVPDRPVAESEEIVL*
Ga0105239_107084792	3300010375	Corn Rhizosphere	GGRDRQEGGMSNRPARITQVEIERAVRAARKAGATEVEVKMGDGVSIRIPLVPDRPVAEGDEIVL*
Ga0126381_1046965632	3300010376	Tropical Forest Soil	MSNRPARITQAEIERAIRAAKKAGATEVEVKMSDGVSIRIPLTSDKPVAETEEIVL*
Ga0136449_1008722952	3300010379	Peatlands Soil	MSNRPARISQAEIERAIRAARKAGASEVEVKMGDGVSIRIPLVPDRPVAESEEIVL*
Ga0136449_1015943561	3300010379	Peatlands Soil	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRIPLVANQPVAETEEIVL*
Ga0137379_111347141	3300012209	Vadose Zone Soil	RITQAEIERAIRAAKKAGLNEVEVRLGDEASIRIPLAPEKPVAESVDIIL*
Ga0164304_110649131	3300012986	Soil	MSNRPARITQAEIERAIRAAKKAGVTEIELRIGDNATVRIPLTSDNS
Ga0164305_116131992	3300012989	Soil	MSSRPARITQAEIERAIRAAKKAGGTEVVVKIGDEVSIRIPLVPDQPVAESEEIVL*
Ga0164305_121445662	3300012989	Soil	MAQTTRKRAARITETEIKRVIRAARKAGITEVEVKLGDHASVRIPLAPDKPVAAEEIVL*
Ga0182041_106993902	3300016294	Soil	MSNRPARITQTEIERVIRAARKAGVTEVEVKIGDEASIRIPLVPDKPVAESEDIVL
Ga0182034_110573592	3300016371	Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVRLGDEASIRIPLAPEKPIADAGEIIL
Ga0182037_118481022	3300016404	Soil	MSHRPARITQAEIERAIRAAKKAGLTEVEVRLGDKASIRIPLAPE
Ga0182039_101037082	3300016422	Soil	MSNRPARITQAAIERAIRAAKKAGLTEVEVRLGDEASIRIPLAAEKPIADAGEIIL
Ga0182039_117283271	3300016422	Soil	MSNRPARISQAEIEHALRAARKIGATEVEVKMGDGVSIRIPLGPD
Ga0182039_119089391	3300016422	Soil	MTNRPARITQAEIQRVIRAGKKEGVPAVELKIGEEASVRYLLALDKPIAEADEVVL
Ga0187802_104140663	3300017822	Freshwater Sediment	MSNRPARITQAEIERVIRAARKAGVTEIEVKIGDDASIRIPLALEQPIAES
Ga0187802_104508902	3300017822	Freshwater Sediment	SNRPARITHAEIARAIRAAKKAGAAEVEVKIGDEASIRISLATPEQPIAESDEVVL
Ga0187819_102747811	3300017943	Freshwater Sediment	MSRRPARITQAEIERVIRAARKAGLPEVEVKIGEGASIRIPLAPEQPIAESEEIIL
Ga0187778_113497882	3300017961	Tropical Peatland	MSNRPARITQAEIERAIRAARKAGVTEVVVTIGAEVSIRIPLVPDRPVAESEDIVL
Ga0187783_104844942	3300017970	Tropical Peatland	VSNRPARITQAEIARAIRAAKKAGVTEVVVKIGDEVAIHISLVPEQPVAESEEIVL
Ga0187783_105011082	3300017970	Tropical Peatland	MSNRPARITQAEIERAIRAARKAGVTEIELKIGDGATVRIPLALNNKPVAE
Ga0187780_101165432	3300017973	Tropical Peatland	MSNRPARITQAEIEGAIRAARKEGVTEVELKIGDEASIRIPLAPDKPVAESGEIVL
Ga0187777_102881561	3300017974	Tropical Peatland	MSNRPARITQAEIERAIRAARKEGVTEVELKIGDEASIRIPLAPDKPVAESGEIVL
Ga0187777_113869261	3300017974	Tropical Peatland	MSNRPARITQPEIERAIRAAKKAGLVEVEVKIGEEVSIRYSLVPDRPVAESEDIVL
Ga0187772_108311892	3300018085	Tropical Peatland	MSNRPARITQAEIERAIRAARKEGVTEVEWKIGDEASIRIPLAPDKPVAESGEIVL
Ga0187769_100246402	3300018086	Tropical Peatland	MSNRPARIRQAEIERAIRAAKKHGATAVELKIGEQVSIRIPLVLDKGLGESQEVLAESQEVVL
Ga0187769_104541992	3300018086	Tropical Peatland	MSNRPARIRQAEIDRVIRAARKAGATQVEVRIGNEASIRIHLVPDKSIAESEEIIL
Ga0187769_109113621	3300018086	Tropical Peatland	MSNRSARIRQVEIERAIRAAKKAGLAEVEVKIGGEVSVRIPLVPDKDVAKAELREQSEAT
Ga0187770_109726392	3300018090	Tropical Peatland	MSNRPARSTQPEIEHAIRAAKKAGLVEVEVKIGEVSIRYSLVPERRVAESDEVVL
Ga0210407_112218412	3300020579	Soil	MSNRPARITQVEIERAIRAAKKAGLTEVEVRIGDAASIRIPLALEKPIAESEEIIL
Ga0210403_113763182	3300020580	Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVRLGDEASIRIPLVPDKAIAESGEIIL
Ga0210395_102261061	3300020582	Soil	AACCRAAVLGGRDHQEDDGMSSRPARITQAEIERAIRAAKKAGGTEVVVKIGDEVSIRIPLVPDQPVAESEEIVL
Ga0210395_103397741	3300020582	Soil	MSNRPARISQAEIERAIRAAKKAGATEVEVKMGDGVSIRIPLGPDRP
Ga0210395_106563692	3300020582	Soil	MTNRLARITQAEIERVIRAAKKAGVSEIEVKIGEYAVVRISLASDRPVAETTEIVL
Ga0210401_100584154	3300020583	Soil	MSSRPARITQAEIERAIRAAKKAGGTEVVVKIGDEVSIRIPLVPDQPVAESEEIVL
Ga0210401_101538453	3300020583	Soil	LSNRPARITQAEIERAIRAAKKAGVTEIELRIGDNATVRIPLTSDNSVAETEEIVL
Ga0210401_103842552	3300020583	Soil	MSNRPARISQAEIERAIRAAKKAGATEVEVKMGDGVSIRIPLGPDRPVAEGEEIVL
Ga0210401_105120293	3300020583	Soil	VSNRPARITQAEIERAIRAAKKAGVTEVEVRIGDGVTVRIPLAPDQPVAESKEIVL
Ga0210401_107808242	3300020583	Soil	MTNRPARITQAEIERVIRAAKKAGVSEIEVKIGEYAVVRISLASDRPVAETTEIVL
Ga0210406_101678502	3300021168	Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVRIGDAASIRIPLALEKPIAESEEIIL
Ga0210408_102208311	3300021178	Soil	NRPARITQAEIERAIRAAKKAGVTEIELRIGDNATVRIPLTSDKSVAETEEIVL
Ga0210396_100476633	3300021180	Soil	MSNRPARISQAEIERAIRAARKAGATEVELKIGVDVSIRIRIPLAPDRPVAESEEIVL
Ga0210396_109197922	3300021180	Soil	VSNRPARFLQAEIERAIRAAKKAGATEVEVRMGDNVSIRISLGPDRPVAEGEEIVL
Ga0210393_112429142	3300021401	Soil	MSNRPARITQSEIERAIRAAKKAGATEVDVRIGDEASIRIPLVAEKTV
Ga0210387_110055951	3300021405	Soil	MTNRLARITQAEIERVIRAAKKAGVSEIEVKIGEYAVVRISLASDRPV
Ga0210383_103336313	3300021407	Soil	MSNRPARITQAEIERAIRAAKKAGATEIELKIGDGATVRIPLAPDKPVADTEEIVL
Ga0210384_112407182	3300021432	Soil	MSNRPARISQTEIERAIRAARKAGASEVEVKMGDGVSIRIPLVPDRPVAESEEIVL
Ga0210384_113411323	3300021432	Soil	MSSRPARITQAEIERAIRAAKKAGGTEVVVKIGDEVSIRIPLVPDQPVAESEGL
Ga0210390_109479022	3300021474	Soil	MSRRAARITQAEIERVIRAAMKAGVAEVEVKIGEDASIRISLAPAKPIAESDEVVL
Ga0210410_100621441	3300021479	Soil	MSNRPARISQAEIERAIRAARKAGASEVEVKMGDGVSIRIPLAPDRPVAE
Ga0210410_101779762	3300021479	Soil	LSNRPARITQAEIERAIRAAKKAGVTEIELRIGDNATVRIPLTSDKSVAETEEIVL
Ga0210410_102764135	3300021479	Soil	MSSRPARITQAEIERAIRAAKKAGGTEVVVKIGDEVSIRIPLVPDQP
Ga0126371_117663352	3300021560	Tropical Forest Soil	VSNRPARITQAEIERAIRAARKAGVPVVEVKIGDEVSIRIPLLPDQPVAESEEIVL
Ga0212123_1002032110	3300022557	Iron-Sulfur Acid Spring	MSNRPARITQAEIERAIRAARKAGLTEVEVRIGDDTSIRIPLAPEQAIAESEEIIL
Ga0228598_11287542	3300024227	Rhizosphere	MSNRPARITQAEIERAIRAAKKAGLTEVEVRLGDEASIRIPLAPDKAVAESGEVVL
Ga0207668_112399092	3300025972	Switchgrass Rhizosphere	MTRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRISLVPDRPVAEGEEIVL
Ga0209007_11278362	3300027652	Forest Soil	MSNRPARISQAEIERAIRAARKAGATEVELKIGVDGSIRIRIPLAPDRPVAESEEIVL
Ga0209698_112119842	3300027911	Watersheds	MSNRPARITQSEIERAIRAAKKAGATEVEVRIGDEASIRIPLVAEKPVAESDEVVL
Ga0310037_102338702	3300030494	Peatlands Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVRIGDEASIRIPLAPEKPIAEPEEIIV
Ga0310915_100619124	3300031573	Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVRLGDEASIRIPLAAEKPIADAGEIIL
Ga0310686_10090725411	3300031708	Soil	MSNRPARITQAEIERAIRAAKKAGAAEVEVKMGDGVSIRIPLAPDRPIAESEEIVL
Ga0310686_1063181515	3300031708	Soil	MSNRPARITQAEIERAIRAAKKAGLAEVEVRIGDEASIRIPLAPEKPIADAGEIVL
Ga0310686_1110689842	3300031708	Soil	MSNRPARITQAEIERAIRAGKKAGVTEVEVKIGDGVSIRIPLVPDQPVAESEEIVL
Ga0310686_1119391334	3300031708	Soil	MSNRPARITQAEIERAIRAAKKAGLTEVEVRIGDEASIRIPLAPEKPIAESEEIIV
Ga0307477_105568122	3300031753	Hardwood Forest Soil	MSNRPARITQSEIERVIRAAKKAGATEVEVRIGDEASIRIPLVPEKPVAESDEVVL
Ga0306919_101706622	3300031879	Soil	MSNRPARITQAEIERVIRAAKKAGLTEVEVRLGDEASIRIPLAPEKPIADDGEIIL
Ga0306925_111251682	3300031890	Soil	SGGGNCQEGGMSNRPARITQTEIERVIRAARKAGVTEVEVKIGDEASIRIPLVPDKPVAESEDIVL
Ga0306921_115253352	3300031912	Soil	GMSNRPARITQAEIERAIRAAKKAGLTEVEVRLGDEASIRIPLAAEKPIADAGEIIL
Ga0310916_111611871	3300031942	Soil	MSNRPARITQVEIERAIRAARKAGLTEIEVRVGDEVSIRIPLVPDKDIAEPEEIVL
Ga0310916_112740821	3300031942	Soil	VTQAEIERAIRAARKFGLTEVEVRLGDDASVRIPLTPDKPVAETGEIVL
Ga0310909_112675532	3300031947	Soil	MSHRPARITQAEIERAIRAAKKAGLTEVEVRLGDKASIRIPLAPEKPIADAGEIIL
Ga0318556_106577532	3300032043	Soil	MSNRPARITQAEIERVIRAAKKAGLTEVEVRLGDEASIRIPLAPEKPIADAGEIIL
Ga0318533_104706632	3300032059	Soil	AEIERAIRAAKKAGLTEVEVRLGDEASIRIPLAAEKPIADAGEIIL
Ga0311301_103008614	3300032160	Peatlands Soil	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRIPLVPDRPVAESEEIVL
Ga0311301_114504152	3300032160	Peatlands Soil	MSNRPARISQAEIERAIRAARKAGATEVEVKMGDGVSIRIPLVANQPVAETEEIVL
Ga0306920_1030115482	3300032261	Soil	HVDCQERGMSNRPARITQAEIERAIRAAKKAGATEVEVKMSDGVSIRIPLVPDRPVAESEEIVL
Ga0335081_118885522	3300032892	Soil	MSNRSARITQAEIERAIRAAKKAGAAEVEVKMGDGVSIRIPLAPDRPVAESEEIVL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092570

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences