Metagenome / Metatranscriptome Family F092536

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092536
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	46 residues
Representative Sequence	MKRPKKGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Number of Associated Samples	61
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	49.53 %
% of genes near scaffold ends (potentially truncated)	39.25 %
% of genes from short scaffolds (< 2000 bps)	81.31 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.46

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (66.355 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (51.402 % of family members)
Environment Ontology (ENVO)	Unclassified (47.664 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (83.178 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.84% β-sheet: 0.00% Coil/Unstructured: 62.16%
Feature Viewer

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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.46
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.46
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF13975	gag-asp_proteas	5.61
PF13650	Asp_protease_2	2.80
PF09935	DUF2167	2.80
PF07589	PEP-CTERM	1.87
PF13412	HTH_24	1.87
PF05973	Gp49	0.93
PF11185	DUF2971	0.93
PF13384	HTH_23	0.93
PF02371	Transposase_20	0.93
PF05621	TniB	0.93
PF02796	HTH_7	0.93
PF02357	NusG	0.93
PF00271	Helicase_C	0.93
PF13358	DDE_3	0.93
PF13407	Peripla_BP_4	0.93
PF12833	HTH_18	0.93
PF13683	rve_3	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0250	Transcription termination/antitermination protein NusG	Transcription [K]	0.93
COG3547	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	Defense mechanisms [V]	0.93
COG4679	Phage-related protein gp49, toxin component of the Tad-Ata toxin-antitoxin system	Defense mechanisms [V]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
All Organisms	root	All Organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
cellular organisms	root	All Organisms → cellular organisms	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	33.64 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20.56 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	12.15 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.48 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.87 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	1.87 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6.54 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	1.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.87 %
Methyloferula	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula	0.93 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	2.80 %
Nitrosomonas oligotropha	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas oligotropha	1.87 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.87 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	0.93 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.93 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	66.36 %
Bradyrhizobium sp. SRL28	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	1.87 %
Nitrosomonas oligotropha	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas oligotropha	1.87 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1.87 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1.87 %
Bradyrhizobium sp. ORS 278	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	0.93 %
Methyloferula stellata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	0.93 %
Bradyrhizobium diazoefficiens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	0.93 %
Rhizobiales bacterium GAS191	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	0.93 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_102583955	Not Available	838	Open in IMG/M
3300001546\|JGI12659J15293_10001286	All Organisms → cellular organisms → Bacteria → Proteobacteria	7955	Open in IMG/M
3300001546\|JGI12659J15293_10002730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5389	Open in IMG/M
3300001593\|JGI12635J15846_10192968	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1354	Open in IMG/M
3300002245\|JGIcombinedJ26739_100331727	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas oligotropha	1403	Open in IMG/M
3300003505\|JGIcombinedJ51221_10153114	Not Available	932	Open in IMG/M
3300004092\|Ga0062389_104047602	Not Available	551	Open in IMG/M
3300004631\|Ga0058899_11591217	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	770	Open in IMG/M
3300004635\|Ga0062388_101363682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	710	Open in IMG/M
3300005439\|Ga0070711_102008345	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300005533\|Ga0070734_10026007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3775	Open in IMG/M
3300005591\|Ga0070761_11002434	Not Available	530	Open in IMG/M
3300005602\|Ga0070762_10179517	All Organisms → cellular organisms → Bacteria	1285	Open in IMG/M
3300005602\|Ga0070762_10612280	Not Available	724	Open in IMG/M
3300005602\|Ga0070762_10956373	Not Available	586	Open in IMG/M
3300005610\|Ga0070763_10096106	Not Available	1487	Open in IMG/M
3300005610\|Ga0070763_10654092	Not Available	613	Open in IMG/M
3300005712\|Ga0070764_10515070	Not Available	721	Open in IMG/M
3300005921\|Ga0070766_11270201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	510	Open in IMG/M
3300006059\|Ga0075017_101124498	Not Available	614	Open in IMG/M
3300006174\|Ga0075014_100327772	All Organisms → cellular organisms → Bacteria	815	Open in IMG/M
3300006176\|Ga0070765_101258712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	698	Open in IMG/M
3300006176\|Ga0070765_101486072	Not Available	638	Open in IMG/M
3300006176\|Ga0070765_102050072	Not Available	535	Open in IMG/M
3300011120\|Ga0150983_13414391	Not Available	686	Open in IMG/M
3300011404\|Ga0153951_1024162	Not Available	1040	Open in IMG/M
3300011411\|Ga0153933_1096839	Not Available	623	Open in IMG/M
3300015206\|Ga0167644_1024625	All Organisms → cellular organisms → Bacteria	2555	Open in IMG/M
3300018017\|Ga0187872_10338175	Not Available	649	Open in IMG/M
3300020579\|Ga0210407_10015717	Not Available	5621	Open in IMG/M
3300020580\|Ga0210403_10094566	Not Available	2420	Open in IMG/M
3300020580\|Ga0210403_10888019	Not Available	704	Open in IMG/M
3300020581\|Ga0210399_10380404	Not Available	1178	Open in IMG/M
3300020581\|Ga0210399_10887550	Not Available	724	Open in IMG/M
3300020581\|Ga0210399_11023250	Not Available	664	Open in IMG/M
3300020582\|Ga0210395_10081614	Not Available	2383	Open in IMG/M
3300020582\|Ga0210395_10141240	Not Available	1794	Open in IMG/M
3300020582\|Ga0210395_10201061	Not Available	1494	Open in IMG/M
3300020582\|Ga0210395_10518336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	897	Open in IMG/M
3300020582\|Ga0210395_10547860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	870	Open in IMG/M
3300020582\|Ga0210395_10746845	Not Available	731	Open in IMG/M
3300020583\|Ga0210401_10916165	Not Available	735	Open in IMG/M
3300021168\|Ga0210406_10140237	Not Available	2033	Open in IMG/M
3300021168\|Ga0210406_10237048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. SRL28	1502	Open in IMG/M
3300021168\|Ga0210406_10470761	Not Available	997	Open in IMG/M
3300021170\|Ga0210400_11104547	Not Available	642	Open in IMG/M
3300021171\|Ga0210405_10881123	Not Available	681	Open in IMG/M
3300021171\|Ga0210405_11123643	Not Available	586	Open in IMG/M
3300021178\|Ga0210408_10043380	All Organisms → cellular organisms → Bacteria → Proteobacteria	3525	Open in IMG/M
3300021178\|Ga0210408_10115869	All Organisms → cellular organisms → Bacteria	2111	Open in IMG/M
3300021178\|Ga0210408_10209387	Not Available	1551	Open in IMG/M
3300021178\|Ga0210408_10385433	Not Available	1117	Open in IMG/M
3300021178\|Ga0210408_10393919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methyloferula → Methyloferula stellata	1103	Open in IMG/M
3300021178\|Ga0210408_10546407	Not Available	919	Open in IMG/M
3300021178\|Ga0210408_11316213	Not Available	547	Open in IMG/M
3300021180\|Ga0210396_10016770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium diazoefficiens	6805	Open in IMG/M
3300021180\|Ga0210396_10796977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	811	Open in IMG/M
3300021180\|Ga0210396_11333698	Not Available	596	Open in IMG/M
3300021384\|Ga0213876_10008151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5677	Open in IMG/M
3300021401\|Ga0210393_10241679	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300021401\|Ga0210393_10773561	Not Available	782	Open in IMG/M
3300021401\|Ga0210393_11188643	Not Available	614	Open in IMG/M
3300021401\|Ga0210393_11219135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	605	Open in IMG/M
3300021401\|Ga0210393_11258209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. ORS 278	594	Open in IMG/M
3300021402\|Ga0210385_10540741	Not Available	886	Open in IMG/M
3300021402\|Ga0210385_11105123	Not Available	609	Open in IMG/M
3300021405\|Ga0210387_11004926	Not Available	731	Open in IMG/M
3300021405\|Ga0210387_11081153	Not Available	700	Open in IMG/M
3300021405\|Ga0210387_11423760	Not Available	595	Open in IMG/M
3300021406\|Ga0210386_10955571	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → Nitrosomonas oligotropha	732	Open in IMG/M
3300021406\|Ga0210386_10967295	Not Available	727	Open in IMG/M
3300021406\|Ga0210386_11792771	Not Available	505	Open in IMG/M
3300021420\|Ga0210394_11506643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	569	Open in IMG/M
3300021420\|Ga0210394_11782418	Not Available	514	Open in IMG/M
3300021432\|Ga0210384_11086949	Not Available	703	Open in IMG/M
3300021475\|Ga0210392_10058193	Not Available	2409	Open in IMG/M
3300021475\|Ga0210392_11299501	Not Available	544	Open in IMG/M
3300021477\|Ga0210398_10586071	Not Available	906	Open in IMG/M
3300021477\|Ga0210398_11330548	Not Available	564	Open in IMG/M
3300021479\|Ga0210410_10273104	Not Available	1517	Open in IMG/M
3300021479\|Ga0210410_10825259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium GAS191	813	Open in IMG/M
3300021479\|Ga0210410_10889972	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	777	Open in IMG/M
3300021559\|Ga0210409_11331269	Not Available	594	Open in IMG/M
3300022530\|Ga0242658_1084090	Not Available	737	Open in IMG/M
3300022721\|Ga0242666_1177176	Not Available	535	Open in IMG/M
3300027826\|Ga0209060_10231194	Not Available	849	Open in IMG/M
3300027879\|Ga0209169_10048192	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2221	Open in IMG/M
3300027879\|Ga0209169_10721992	Not Available	515	Open in IMG/M
3300027884\|Ga0209275_10507276	Not Available	688	Open in IMG/M
3300027889\|Ga0209380_10072099	Not Available	1973	Open in IMG/M
3300027889\|Ga0209380_10186336	Not Available	1217	Open in IMG/M
3300027895\|Ga0209624_10001263	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	20292	Open in IMG/M
3300027908\|Ga0209006_10132837	Not Available	2192	Open in IMG/M
3300027908\|Ga0209006_10409050	Not Available	1142	Open in IMG/M
3300027908\|Ga0209006_11414482	Not Available	531	Open in IMG/M
3300030862\|Ga0265753_1104936	Not Available	576	Open in IMG/M
3300031057\|Ga0170834_104154536	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300031446\|Ga0170820_12549019	Not Available	638	Open in IMG/M
3300031474\|Ga0170818_109866472	Not Available	629	Open in IMG/M
3300031507\|Ga0307509_10322956	Not Available	1279	Open in IMG/M
3300031708\|Ga0310686_110609767	Not Available	538	Open in IMG/M
3300031708\|Ga0310686_113526826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9274	Open in IMG/M
3300031708\|Ga0310686_113592708	All Organisms → cellular organisms → Bacteria	48053	Open in IMG/M
3300031759\|Ga0316219_1286347	Not Available	568	Open in IMG/M
3300032895\|Ga0335074_10016467	All Organisms → cellular organisms → Bacteria → Proteobacteria	10410	Open in IMG/M
3300032895\|Ga0335074_10057440	All Organisms → cellular organisms → Bacteria	5325	Open in IMG/M
3300032898\|Ga0335072_10796892	Not Available	904	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.26%
Host-Associated	Host-Associated	3.74%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.72%
Aquatic	Environmental → Aquatic	6.54%
Plants	Host-Associated → Plants	1.87%
Fungi	Host-Associated → Fungi	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.72%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Sediment	Environmental → Aquatic → Sediment	1.87%
Roots	Host-Associated → Plants → Roots	1.87%
Mycelium	Host-Associated → Fungi → Mycelium	1.87%
Marine	Environmental → Aquatic → Marine	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.75%
Loam	Environmental → Terrestrial → Soil → Loam	26.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.80%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified	1.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	1.87%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.93%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	25.23%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	6.54%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.80%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	1.87%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	1.87%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.93%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	51.40%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	14.95%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	2.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	1.87%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	0.93%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011404	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ035 MetaG	Host-Associated	Open in IMG/M
3300011411	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG	Host-Associated	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022721	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031759	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - TBH18003P	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1025839551	3300001213	Wetland	PMSLLKAKVGRPLNSQRHLTAEATKPWENLGMSRRTWYRRQIEKKGRP*
JGI12659J15293_100012867	3300001546	Forest Soil	MKRPKKGRPRIEDRARTIEARKPWLKLGMSRRTWYRREAEKRKGRE*
JGI12659J15293_100027308	3300001546	Forest Soil	MKRARKGGPRIEDRAKTIEARKPWLKLNMSRRTWYRRQAEKRKGRE*
JGI12635J15846_101929685	3300001593	Forest Soil	MDLKRPKTGRPRIEDRANTNEARKPWLKLSMSRRTWYRRQAEKRKGRDASICK*
JGIcombinedJ26739_1003317273	3300002245	Forest Soil	VALVDVRGLSGGLNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE*
JGIcombinedJ51221_101531142	3300003505	Forest Soil	KTGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAERRTKGQQ*
Ga0062389_1040476021	3300004092	Bog Forest Soil	LGLHLQHRAPMTQPSKGRPRIEDRAKTIEAKEPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0058899_115912171	3300004631	Forest Soil	MKRARKGRPRIEDRANTIEARKPWLKLGMSRRTWYRRQAEKRKGRE*
Ga0062388_1013636823	3300004635	Bog Forest Soil	MNRRKAGCPRIENRANTNEAKKPWLKLGMSRTTWYRRQAEQRKGRE
Ga0070711_1020083451	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	KKGRPRIEDRARTIEAKKPWLKLNMSRRTWYRRQAERRQGRE*
Ga0070734_100260075	3300005533	Surface Soil	MKRPKKGRPRIEHRGQTIESKKPWLKLCMSRRTWYRRQAEKRKGRE*
Ga0070761_110024341	3300005591	Soil	MNRAPNKGRPRIEDRANTIEAKKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0070762_101795172	3300005602	Soil	MRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKRKAAAGIEVSL*
Ga0070762_106122801	3300005602	Soil	KKGRPRIEDRANTLEAKKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0070762_109563731	3300005602	Soil	IEDRAKTIEARQPWLKLGMSRRTWYRRQAEKRALSGPSEASI*
Ga0070763_100961062	3300005610	Soil	MSQAEQRRKTGRPRLEDIGKTNEAKKPWLKLGMSRRTWYYRQAEKRKGRE*
Ga0070763_106540922	3300005610	Soil	MKPRKKGRPRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEKREGRE*
Ga0070764_105150701	3300005712	Soil	MGPMKPRKKGRPRIEDRARTIEAKKPWLKLCMSRRTWYRRQAEKRKGRAIQAAA*
Ga0070766_112702012	3300005921	Soil	KGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEQRKGRE*
Ga0075017_1011244982	3300006059	Watersheds	MTQPRKTGRPRIEERHKTNEAKKPWLKLEMSRRTWYRRQAEQRKGRE*
Ga0075014_1003277721	3300006174	Watersheds	MKRARKGRPRIEDRTNTNEAKKPWLKLEMSRRTWYRRQAERRARG
Ga0070765_1012587123	3300006176	Soil	RRKTGRPRIEERHLTNEARKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0070765_1014860722	3300006176	Soil	LNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE*
Ga0070765_1020500721	3300006176	Soil	MRRSPKKGRPRIEERHKTVEARKPWLKLEMSRRTWYRRQA
Ga0150983_134143911	3300011120	Forest Soil	MKPRKKGRPRIEDRARTIEAKKPWFKLGMSRRTWYRRQAEKREGQIG
Ga0153951_10241622	3300011404	Attine Ant Fungus Gardens	MKRPKKGRPRIEDRARTIEARKPWLKLGMSRRTWYRRQAEKRKGRE*
Ga0153933_10968393	3300011411	Attine Ant Fungus Gardens	MKRPKKGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAEKRKGRE*
Ga0167644_10246252	3300015206	Glacier Forefield Soil	MKRARKGRPRIEARPNTNEARKPWLKLEMSRRTWYRRQAEKRKSQE*
Ga0187872_103381751	3300018017	Peatland	MRKKGRPRLEDRGKTLAAKKPWEKLGMSRRTWYRRRAERMMKTI
Ga0210407_100157178	3300020579	Soil	MNARRKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210403_100945663	3300020580	Soil	MNARRKGRPRIEDRAKTIEARKPWLKLEMSPRTWYRRQAEKRKGRE
Ga0210403_108880191	3300020580	Soil	MKRARKGRPRIEDRANTNEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210399_103804042	3300020581	Soil	MNARRKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGR
Ga0210399_108875502	3300020581	Soil	VALVDVRGLSGGLNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210399_110232502	3300020581	Soil	KPIKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKAAAGIEVSL
Ga0210395_100816144	3300020582	Soil	MKPRKKGRPRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEKREGRE
Ga0210395_101412402	3300020582	Soil	MSQAEQRRKTGRPRLEDIGKTNEAKKPWLKLGMSRRTWYYRQAEKRKGRE
Ga0210395_102010614	3300020582	Soil	VKPKKGRPRIEDRANTNEARQPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210395_105183363	3300020582	Soil	MNARRKGRPRIEDRAKTIEARASWLKLEMSRRTWYRRQAEKRKGRE
Ga0210395_105478601	3300020582	Soil	PRKKGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAEKRAGRAVR
Ga0210395_107468453	3300020582	Soil	MKRPKKGRPRIEDRARTIEARKPWLKLGMSRRTWYRREAEKRKGRE
Ga0210401_109161652	3300020583	Soil	VSQAEQRRKTGRPRIEDRAKTNEAKKPWLKLEMSRRTWYRRQAEKREKGQQ
Ga0210406_101402376	3300021168	Soil	MKRARKGGPRIEERHLTNEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210406_102370482	3300021168	Soil	MARCKTGRPRIEDRANTTEARKPWLKLNMSRRTWYRRQAEKRKGRE
Ga0210406_104707611	3300021168	Soil	MTEHRTTKGRPRIEDRAKTIEAKRPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210400_111045472	3300021170	Soil	AEQRRKTGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGREA
Ga0210405_108811232	3300021171	Soil	LNVKMTEQRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210405_111236431	3300021171	Soil	GRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210408_100433803	3300021178	Soil	MRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKRKAAAGIEVSL
Ga0210408_101158691	3300021178	Soil	MKPPKKGRPRIEDRAKTIEVRKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210408_102093872	3300021178	Soil	MRRRKPGGPRIEDRAKTIEARQPWLKLGMSRRTWYRRQAEKRALSGPSEASI
Ga0210408_103854332	3300021178	Soil	MVATRKTGRPRIEERHKTNEAKKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210408_103939191	3300021178	Soil	MMKHAPKTGRPRIEDRANTIEARKPWLKLEMSRRTWYRRQAEKRKGQGSWSDC
Ga0210408_105464072	3300021178	Soil	MRMKPPKKGRPRIEDRAQTIEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0210408_113162132	3300021178	Soil	QRARKGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210396_100167701	3300021180	Soil	EDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210396_107969771	3300021180	Soil	EDRANTIEARKPWLKLEMSRRTWYRRQAEKRAGRAVR
Ga0210396_113336983	3300021180	Soil	PRIEDRAQTIEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0213876_1000815110	3300021384	Plant Roots	MKRPKGGRPRIEERAKTNEAQKPWLKLGMSRRTWYRRQAEKRKGLE
Ga0210393_102416792	3300021401	Soil	MAHRKTGRPRIEDRARTIEARKPWLKLEMSRRTWYRRQAERRTKGQQ
Ga0210393_107735613	3300021401	Soil	RAMKRGRKGGPRIEERHLTNEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210393_111886431	3300021401	Soil	MRRSPKKGRPRIEDRAKTNEAKKPWLKLEMSRRTWYRRQ
Ga0210393_112191352	3300021401	Soil	MLMMSKRKTGRPRIEDVGKTNEAKKPWLKLEMSRRTWYRRQVEKREKTGS
Ga0210393_112582092	3300021401	Soil	MKRLPKKGRPRIEDRAKTIEAKKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210385_105407413	3300021402	Soil	MKRPKKGRPRIEDSARTNEARKPWLKLGMSRRTWYRREAEKRKGRE
Ga0210385_111051231	3300021402	Soil	MGPMKPRKKGRPRIEDRARTIEAKKPWFKLGMSRRTWYRRQAEKREGQIG
Ga0210387_110049262	3300021405	Soil	RPRIEDRAKTNEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210387_110811531	3300021405	Soil	IQMKPAHKGRPRIEDRAKTIEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210387_114237602	3300021405	Soil	MKRAKKDRPRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0210386_109555713	3300021406	Soil	KGRPRIEDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210386_109672951	3300021406	Soil	VSQAEQRRKTGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGREA
Ga0210386_117927711	3300021406	Soil	RIEDRAKTIEARAPWLKLNMSRRTWYRRQAEKRASRA
Ga0210394_115066432	3300021420	Soil	MPQSRKTGRPRIEDRAKTIEAKKPWLKLEMSRRTWYRRQ
Ga0210394_117824182	3300021420	Soil	MKRARKGRPRIEDRANTNEARKPWLKLGMSRRTWYRRQGR
Ga0210384_110869491	3300021432	Soil	MKPPKKGRPRIEDRANTLEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0210392_100581933	3300021475	Soil	VRRAPKKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0210392_112995011	3300021475	Soil	MARMRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKRK
Ga0210398_105860711	3300021477	Soil	MMLQPRKTGRPRIEERANTIEAKKPWLKLEMSRRTWYRRQA
Ga0210398_113305481	3300021477	Soil	RMMKRAPKKGRPRIEDRAKTIEARAPWLKLGMSRRTWYRRQAEKRAGRAVR
Ga0210410_102731041	3300021479	Soil	MTSRKAGRPRIEDRAKTIEARAPWLKRGMSRRTWYR
Ga0210410_108252592	3300021479	Soil	VPLGGEMRRLPKKGRPRIEDRANTIEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0210410_108899721	3300021479	Soil	MSLAFEALMKPARKGRPRIEDRANTIEARKPWLKLGMSRRTWCRRQAEKRAGRA
Ga0210409_113312692	3300021559	Soil	PRIEDRARTIEAKKPWLKLEMSRRTWYRRQAEKREGRE
Ga0242658_10840901	3300022530	Soil	ARKGRPRIEDRTNTNEAKKPWLKLEMSRRTWYRRQAERRARGSI
Ga0242666_11771762	3300022721	Soil	MKPRKNGRPRIEERANTIEAKKPWLKLEMSRRTWYRRQAK
Ga0209060_102311941	3300027826	Surface Soil	MKRPKKGRPRIEHRGQTIESKKPWLKLCMSRRTWYRRQAEKRKGRE
Ga0209169_100481922	3300027879	Soil	MKPRKKGRPRIEDRARTIEAKKPWFKLGMSRRTWYRRQAEKRAGRAVR
Ga0209169_107219921	3300027879	Soil	EDRAKTNEAKKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0209275_105072761	3300027884	Soil	RAKKGRPRIEDRANTNEARKPWLKLEMSRRTWYRRQAEKRALSGPSEASI
Ga0209380_100720993	3300027889	Soil	MRRAPKKGRPRIEDRARTIEARAPWLKLGMSRRTWYRRQAEKREGRE
Ga0209380_101863362	3300027889	Soil	MSQAEQRRKTGRPRLEDIGKTNEAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0209624_1000126317	3300027895	Forest Soil	MKRARKGGPRIEDRAKTIEARKPWLKLNMSRRTWYRRQAEKRKGRE
Ga0209006_101328372	3300027908	Forest Soil	MKRPKKGRPRIEDSARTNEARKPWLKLGMSRRTWYRRQAEKRKGRE
Ga0209006_104090502	3300027908	Forest Soil	RPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0209006_114144822	3300027908	Forest Soil	TGRPRLEDRANTIEARKPWLKLGMSRRTWYRRQAEKRAGRAG
Ga0265753_11049361	3300030862	Soil	VKPKKGRPRIEDRANTNEARQPWLKLGMSRRTWYRRQAEA
Ga0170834_1041545362	3300031057	Forest Soil	MKPPKKGRPRIEDRAQTIDAKKPWLKLEMSRRTWYRRQAEQRKGRE
Ga0170820_125490192	3300031446	Forest Soil	MRRAPKKGRPRIEDRAKTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0170818_1098664721	3300031474	Forest Soil	MMRRPKKGRPRIEDRAKTIEARQPWLKLEMSRRTWYRPQAEKRKGRE
Ga0307509_103229561	3300031507	Ectomycorrhiza	GRPRLEEAGKTLEAVKPWEKKGMSRRTWYRRQREQREKVK
Ga0310686_1106097673	3300031708	Soil	MAIKAKTGRPRIEDRARTLEAKKPWLNLEMSRRTWYRRQAEKRTGGK
Ga0310686_1135268264	3300031708	Soil	MKPAPKTGRPRIEDRAKTIEARAPWLKLEMSRRTWYRRQAEKRKGRE
Ga0310686_11359270828	3300031708	Soil	MNQPRKAGRPRIEDRADTNEAEKPWLKLGMSRSTWYRRQAEQRKGRE
Ga0316219_12863471	3300031759	Freshwater	PRIEDRAKTNEAKKPWLKIIDPITGKPMSRRTWYRRRAEKAATEKGK
Ga0335074_100164676	3300032895	Soil	MKRPKRGGPRIEERPLTNEARKPWLKLGMSRRTWYRRQAEQRRGRE
Ga0335074_100574405	3300032895	Soil	MKPPKKGRPRIEQRGQTIEARKPWLKLEMSRRTWYRRQAEKRKGRE
Ga0335072_107968922	3300032898	Soil	MKRPKRGGPRIEERPLTNEARKPWLKLGMSRRTWYRRQA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092536

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences