Metagenome / Metatranscriptome Family F092528

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092528
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	52 residues
Representative Sequence	ERGALLHHAAGALRIVPEIGVFGLPVQLGKPRTRLVDVKDASSAARRTA
Number of Associated Samples	90
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	1.89 %
% of genes near scaffold ends (potentially truncated)	97.20 %
% of genes from short scaffolds (< 2000 bps)	85.98 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.19

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.075 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.757 % of family members)
Environment Ontology (ENVO)	Unclassified (23.364 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.140 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 9.09% β-sheet: 0.00% Coil/Unstructured: 90.91%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.19
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.19
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00905	Transpeptidase	28.97
PF17092	PCB_OB	17.76
PF03401	TctC	1.87
PF03462	PCRF	1.87
PF00149	Metallophos	1.87
PF01757	Acyl_transf_3	1.87
PF05721	PhyH	1.87
PF05014	Nuc_deoxyrib_tr	0.93
PF00912	Transgly	0.93
PF01520	Amidase_3	0.93
PF11860	Muramidase	0.93
PF13472	Lipase_GDSL_2	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0216	Protein chain release factor RF1	Translation, ribosomal structure and biogenesis [J]	1.87
COG1186	Protein chain release factor PrfB	Translation, ribosomal structure and biogenesis [J]	1.87
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.87
COG5285	Ectoine hydroxylase-related dioxygenase, phytanoyl-CoA dioxygenase (PhyH) family	Secondary metabolites biosynthesis, transport and catabolism [Q]	1.87
COG0744	Penicillin-binding protein 1B/1F, peptidoglycan transglycosylase/transpeptidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0860	N-acetylmuramoyl-L-alanine amidase	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3613	Nucleoside 2-deoxyribosyltransferase	Nucleotide transport and metabolism [F]	0.93
COG4953	Membrane carboxypeptidase/penicillin-binding protein PbpC	Cell wall/membrane/envelope biogenesis [M]	0.93
COG5009	Membrane carboxypeptidase/penicillin-binding protein	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.55 %
Unclassified	root	N/A	36.45 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.07 %
Unclassified	root	N/A	36.45 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	7.48 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	51.40 %
Unclassified	root	N/A	36.45 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	7.48 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.86 %
Unclassified	root	N/A	36.45 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	7.48 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.93 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	33.64 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	7.48 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %
Moraxellales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	15.89 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	7.48 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	7.48 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	1.87 %
Moraxellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae	0.93 %
Rhodospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	15.89 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	7.48 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	7.48 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.87 %
Acinetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter	0.93 %
Caenispirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	7.48 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	7.48 %
Bradyrhizobium retamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	5.61 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.87 %
Acinetobacter calcoaceticus/baumannii complex	species group	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex	0.93 %
Caenispirillum salinarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.45 %
Symbiodinium microadriaticum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	7.48 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	7.48 %
Bradyrhizobium retamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	5.61 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1.87 %
Acinetobacter baumannii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	0.93 %
Caenispirillum salinarum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum	0.93 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004092\|Ga0062389_102027895	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	752	Open in IMG/M
3300004092\|Ga0062389_102451055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	691	Open in IMG/M
3300005332\|Ga0066388_100427737	Not Available	1967	Open in IMG/M
3300005332\|Ga0066388_107813603	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Caenispirillum → Caenispirillum salinarum	535	Open in IMG/M
3300005363\|Ga0008090_15642400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	637	Open in IMG/M
3300005436\|Ga0070713_100130898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2212	Open in IMG/M
3300005436\|Ga0070713_102001293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300005439\|Ga0070711_100192729	Not Available	1568	Open in IMG/M
3300005529\|Ga0070741_10215119	Not Available	1859	Open in IMG/M
3300005560\|Ga0066670_11000884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300005712\|Ga0070764_10662520	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	641	Open in IMG/M
3300005764\|Ga0066903_101016958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1517	Open in IMG/M
3300006174\|Ga0075014_100471294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300006174\|Ga0075014_100941172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	520	Open in IMG/M
3300006854\|Ga0075425_101850016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	677	Open in IMG/M
3300009522\|Ga0116218_1181152	Not Available	954	Open in IMG/M
3300009522\|Ga0116218_1189124	Not Available	931	Open in IMG/M
3300009522\|Ga0116218_1522494	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	529	Open in IMG/M
3300009525\|Ga0116220_10296548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	711	Open in IMG/M
3300009643\|Ga0116110_1288637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	522	Open in IMG/M
3300009792\|Ga0126374_10266575	Not Available	1128	Open in IMG/M
3300009839\|Ga0116223_10784361	Not Available	545	Open in IMG/M
3300010048\|Ga0126373_10143023	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	2265	Open in IMG/M
3300010048\|Ga0126373_12087559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	629	Open in IMG/M
3300010162\|Ga0131853_11194381	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	570	Open in IMG/M
3300010358\|Ga0126370_10980790	Not Available	770	Open in IMG/M
3300010358\|Ga0126370_11222665	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	700	Open in IMG/M
3300010358\|Ga0126370_11245647	All Organisms → cellular organisms → Bacteria → Proteobacteria	694	Open in IMG/M
3300010360\|Ga0126372_10142540	Not Available	1898	Open in IMG/M
3300010360\|Ga0126372_11359111	Not Available	741	Open in IMG/M
3300010376\|Ga0126381_104696549	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	526	Open in IMG/M
3300010379\|Ga0136449_100630407	All Organisms → cellular organisms → Bacteria → Proteobacteria	1818	Open in IMG/M
3300010398\|Ga0126383_10044509	All Organisms → cellular organisms → Bacteria	3651	Open in IMG/M
3300012200\|Ga0137382_10455902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	905	Open in IMG/M
3300012356\|Ga0137371_10055510	All Organisms → cellular organisms → Bacteria	3066	Open in IMG/M
3300012948\|Ga0126375_10198594	Not Available	1314	Open in IMG/M
3300012958\|Ga0164299_10183295	Not Available	1193	Open in IMG/M
3300012971\|Ga0126369_10162745	Not Available	2112	Open in IMG/M
3300013105\|Ga0157369_11691605	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	643	Open in IMG/M
3300013296\|Ga0157374_10375537	All Organisms → cellular organisms → Bacteria → Proteobacteria	1415	Open in IMG/M
3300014501\|Ga0182024_12195421	Not Available	604	Open in IMG/M
3300016319\|Ga0182033_11501816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter calcoaceticus/baumannii complex → Acinetobacter baumannii	608	Open in IMG/M
3300017822\|Ga0187802_10353482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	577	Open in IMG/M
3300017930\|Ga0187825_10031476	Not Available	1788	Open in IMG/M
3300017946\|Ga0187879_10313986	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	870	Open in IMG/M
3300017946\|Ga0187879_10729822	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	552	Open in IMG/M
3300017970\|Ga0187783_10144338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1754	Open in IMG/M
3300017972\|Ga0187781_10383839	Not Available	1002	Open in IMG/M
3300017975\|Ga0187782_10961838	Not Available	663	Open in IMG/M
3300018007\|Ga0187805_10277874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	769	Open in IMG/M
3300018026\|Ga0187857_10067004	Not Available	1796	Open in IMG/M
3300018037\|Ga0187883_10153371	Not Available	1186	Open in IMG/M
3300018038\|Ga0187855_10183394	Not Available	1239	Open in IMG/M
3300018062\|Ga0187784_10068736	All Organisms → cellular organisms → Bacteria	2873	Open in IMG/M
3300018062\|Ga0187784_10152294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	1889	Open in IMG/M
3300020150\|Ga0187768_1078407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	746	Open in IMG/M
3300020581\|Ga0210399_10344973	Not Available	1243	Open in IMG/M
3300020582\|Ga0210395_10005538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9671	Open in IMG/M
3300020582\|Ga0210395_11365364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300020583\|Ga0210401_10447729	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300021388\|Ga0213875_10231976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	870	Open in IMG/M
3300021405\|Ga0210387_11239456	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	647	Open in IMG/M
3300021406\|Ga0210386_10909423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	753	Open in IMG/M
3300025459\|Ga0208689_1018333	Not Available	1957	Open in IMG/M
3300027109\|Ga0208603_1039454	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	730	Open in IMG/M
3300027619\|Ga0209330_1140021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	546	Open in IMG/M
3300027875\|Ga0209283_10632548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	675	Open in IMG/M
3300028379\|Ga0268266_10365703	All Organisms → cellular organisms → Bacteria	1358	Open in IMG/M
3300028780\|Ga0302225_10165236	Not Available	1071	Open in IMG/M
3300028789\|Ga0302232_10380847	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	694	Open in IMG/M
3300028906\|Ga0308309_10642582	Not Available	921	Open in IMG/M
3300030503\|Ga0311370_11641526	Not Available	663	Open in IMG/M
3300030524\|Ga0311357_10545234	Not Available	1074	Open in IMG/M
3300030524\|Ga0311357_11490266	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	573	Open in IMG/M
3300030617\|Ga0311356_10158219	Not Available	2340	Open in IMG/M
3300031057\|Ga0170834_110144856	Not Available	1177	Open in IMG/M
3300031090\|Ga0265760_10014492	Not Available	2259	Open in IMG/M
3300031564\|Ga0318573_10536008	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	630	Open in IMG/M
3300031573\|Ga0310915_10061774	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	2445	Open in IMG/M
3300031573\|Ga0310915_10159046	Not Available	1566	Open in IMG/M
3300031679\|Ga0318561_10625711	Not Available	592	Open in IMG/M
3300031715\|Ga0307476_10898525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	654	Open in IMG/M
3300031720\|Ga0307469_10012864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4209	Open in IMG/M
3300031794\|Ga0318503_10016940	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2012	Open in IMG/M
3300031823\|Ga0307478_10278662	Not Available	1365	Open in IMG/M
3300031833\|Ga0310917_10264258	Not Available	1160	Open in IMG/M
3300031890\|Ga0306925_10814447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	968	Open in IMG/M
3300031910\|Ga0306923_10650406	Not Available	1178	Open in IMG/M
3300031912\|Ga0306921_10688227	Not Available	1176	Open in IMG/M
3300031941\|Ga0310912_11442516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	519	Open in IMG/M
3300032008\|Ga0318562_10114674	Not Available	1537	Open in IMG/M
3300032054\|Ga0318570_10015070	All Organisms → cellular organisms → Bacteria	2816	Open in IMG/M
3300032065\|Ga0318513_10033545	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	2233	Open in IMG/M
3300032068\|Ga0318553_10233427	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	960	Open in IMG/M
3300032076\|Ga0306924_12326609	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	542	Open in IMG/M
3300032094\|Ga0318540_10302428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	772	Open in IMG/M
3300032160\|Ga0311301_10706792	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium microadriaticum	1415	Open in IMG/M
3300032160\|Ga0311301_12110348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium retamae	652	Open in IMG/M
3300032261\|Ga0306920_100834803	Not Available	1351	Open in IMG/M
3300032261\|Ga0306920_102654790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	685	Open in IMG/M
3300032805\|Ga0335078_10498720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1565	Open in IMG/M
3300032893\|Ga0335069_12087483	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	595	Open in IMG/M
3300032895\|Ga0335074_10364910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	1594	Open in IMG/M
3300033134\|Ga0335073_10352290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1743	Open in IMG/M
3300033290\|Ga0318519_11006539	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300033822\|Ga0334828_025336	Not Available	1810	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.39%
Host-Associated	Host-Associated	5.61%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	80.37%
Aquatic	Environmental → Aquatic	14.02%
Plants	Host-Associated → Plants	4.67%
Arthropoda	Host-Associated → Arthropoda	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.83%
Freshwater	Environmental → Aquatic → Freshwater	12.15%
Peat	Environmental → Terrestrial → Peat	6.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.74%
Sediment	Environmental → Aquatic → Sediment	1.87%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.21%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	12.15%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	10.28%
Loam	Environmental → Terrestrial → Soil → Loam	9.35%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	6.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.93%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	28.04%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.30%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	9.35%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.48%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.54%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	6.54%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.80%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	1.87%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.76%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.21%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.61%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	5.61%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	4.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.74%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.80%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.80%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.80%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.80%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.80%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	1.87%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.93%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.93%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.93%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009643	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017946	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018026	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_100	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300020150	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300025459	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150 (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027619	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O3 (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028780	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2	Environmental	Open in IMG/M
3300028789	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030503	III_Palsa_E3 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030617	II_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031090	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033822	Peat soil microbial communities from Stordalen Mire, Sweden - 714 S1 5-9	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062384_1003398482	3300004082	Bog Forest Soil	LHQPAGALGIVPEIGVFGLLVQLGQPGARLVDVKDASSAA
Ga0062389_1020278952	3300004092	Bog Forest Soil	ALLHQPAGALRVVPQIGVFGEVIQLGKAGARFVEVKDASSAAQGTA*
Ga0062389_1024510551	3300004092	Bog Forest Soil	VERGALLHDAAGALRIVPEIGIFGLGVQFRKPCARLIDVKDASLAVRRTA*
Ga0066388_1004277371	3300005332	Tropical Forest Soil	GALLHQPAGALGIVPQIGVFGEVVQLGEAGARLVEVKDASLAAQGTA*
Ga0066388_1078136031	3300005332	Tropical Forest Soil	LIVKLRALLHHSLSALRIVPKIGVLGLLVQLGKSRARLVDVKDASSAARATA*
Ga0008090_156424001	3300005363	Tropical Rainforest Soil	RGALLHQPARPLRIVPKIGVLGLPVQLGKPRARLVEVKDASSAAKATA*
Ga0070713_1001308982	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	KLLVERGALLHDAAGALRIVPEVGVFGLPVQLGKPRARLVDIKDASSAARPTA*
Ga0070713_1020012932	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SQSGELLVERGALLHEPARALRIVPEIGVLGLPVQLGKPRARLVGVKDASSAAPATA*
Ga0070711_1001927292	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	ERGALLHQPARPLRIVPKIGVFGLPVQFGKPRARLVEVKDASSAAPATA*
Ga0070741_102151191	3300005529	Surface Soil	ELVLERGALLHHPAGALRIVPERGVFGLPVQFGKPRARLVDVKDASSAARPTA*
Ga0066670_110008842	3300005560	Soil	CGELLVERGALLHQAAGALRIVPKIRVFGLTIQLGKPRARLVDVKDASSAVRATA*
Ga0070764_106625202	3300005712	Soil	GALLHHPARPRRIVPEIGVFGLPVQLGKAGARFVDVKDASSAALRTA*
Ga0066903_1010169581	3300005764	Tropical Forest Soil	GALLHQPAGALGIVPQIGVFGEVVQLGEAGARLVEVKDASSAAQGTA*
Ga0075014_1004712942	3300006174	Watersheds	LHQLAGALRIVPEFGVFSEPVQLGKPRTGLVDVKDASSAIQPIA*
Ga0075014_1009411721	3300006174	Watersheds	LERGALLHQPAGALGVVPQFGVFGLPVQFRKPRARLVDVKDASSAARRTA*
Ga0075425_1018500162	3300006854	Populus Rhizosphere	PPQGGELLIERSALLHQPARPLWIVPKIGVFGLPVQFGKPCARLVEVKDASSAAPATA*
Ga0116218_11811522	3300009522	Peatlands Soil	GALLHHPARPRRIVPEIGIFGLPVQLGKAGARFVDVKDASSAVRRTA*
Ga0116218_11891241	3300009522	Peatlands Soil	GALLHHPARPRRIVPEIGIFGLPVQLGKAGARFVDVKDASLAVRRTA*
Ga0116218_15224941	3300009522	Peatlands Soil	DTGDGVELILERGAFLHHAAGALRIVPQVGIFGLPVQLGKPRARLVDVKDASSAARRTA*
Ga0116220_102965481	3300009525	Peatlands Soil	LHQPRGTLRVVPEIGVFGEVVQLGEAGARLVEVKDASSAAQGTA*
Ga0116110_12886372	3300009643	Peatland	ERGALLHHAAGALRIVPEIGVFGLPVQLGKPRTRLVDVKDASSAARRTA*
Ga0126374_102665752	3300009792	Tropical Forest Soil	ALGIVPQIGVFGEVVQLGEAGARLVEVKDASLAAQGTA*
Ga0116223_107843612	3300009839	Peatlands Soil	LDAGKRGELIIERGALLHHAAGALRIVPESGVFGLPVQLGKPGARLVDVKDASSAARRTA
Ga0126373_101430231	3300010048	Tropical Forest Soil	VERGALLHQPARPLRIVPEMGVFGLPVQFGQSRARPVEVKDASSAGRATA*
Ga0126373_120875591	3300010048	Tropical Forest Soil	NGGELILERGALLHQPAGALRIVPEIRVFGLPVQLGKARARLFDVKDASSAARPTA*
Ga0131853_111943812	3300010162	Termite Gut	LHQPAGALGIVPQIGIFGEVVQLGEAGACLVEVKDASSAARATA*
Ga0126370_109807902	3300010358	Tropical Forest Soil	RQLLLKRRALLHQPAGALGIVPQIGIFGEVVQLGEAGARLVEVKDASSAAPGTA*
Ga0126370_112226652	3300010358	Tropical Forest Soil	LLVERGALLHQPARPLRIVPKIGIFGLPVQLGKPRTRLVEVKDASSAAPATA*
Ga0126370_112456471	3300010358	Tropical Forest Soil	LKRGALLHQPAGALGIVPQIGVFGQVVEFREAGARLVEVKDASSAAQGTA*
Ga0126372_101425401	3300010360	Tropical Forest Soil	AGALGIVPQIGVFGEVVQLGEAGARLVEVKDASLAAQGTA*
Ga0126372_113591112	3300010360	Tropical Forest Soil	LHQPAGALRIVPQIGVFGEMVQLGEAGARLVEVKDASSAAPGTA*
Ga0126381_1046965492	3300010376	Tropical Forest Soil	QGGELLVERGALLHQPARPLRIVPKIGVFGLSVQFSKPCARLIKVKDASSAAPATA*
Ga0136449_1006304074	3300010379	Peatlands Soil	HQAACPLRVVPEIGVFGEVIEFGEAGCRLVEVKDASSAARATA*
Ga0126383_100445091	3300010398	Tropical Forest Soil	RGALLHQPAGALGIVPQIGVFGEVVQLGEAGARLVEVKDASLAAQGTA*
Ga0137382_104559022	3300012200	Vadose Zone Soil	ELLVERGALLHQAARSLLIAPEIWVFGLTVQLGKPRARLVDVKDASSAVRATA*
Ga0137371_100555102	3300012356	Vadose Zone Soil	LLDPSQCGELLVERGALLHQAARPLLNAPEIWVFGLTVQLGKPRARLVDVKDASSAVRATA*
Ga0126375_101985942	3300012948	Tropical Forest Soil	FVERGALLHQAAGPLRIIPQIGVFHLSIELGKPGARLVDVKDASSAARATA*
Ga0164299_101832951	3300012958	Soil	KVLLDPANRGELVLERGALLHHPAGTLWVVPESGVFGLPVQLGKPCPRLVDVKDASSAARPTA*
Ga0126369_101627451	3300012971	Tropical Forest Soil	RGALLHQPAGALGIVPQIGVFGEVVQLGEAGARLVEVKDASSAAQGTA*
Ga0157369_116916051	3300013105	Corn Rhizosphere	RGAFLHDAAGALRIVPQIGVFGLLVQLGKPRARLVDIKDASSAAQPTA*
Ga0157374_103755373	3300013296	Miscanthus Rhizosphere	LVVEVLLDPAERAELVLERGALLHHPARALLVVPEIGIFGLPVQLGKPRPRFVDVKYASSAARP
Ga0182024_121954211	3300014501	Permafrost	RGALLHHAAGALRIVPEIGIFGLPVQLGEADARLVDVKDASSAARLTA*
Ga0182033_115018161	3300016319	Soil	RGALLHQPAGALGIVPQIGVFGEVVQLGEAGAGLVEVKDASLAAQGTA
Ga0187802_103534822	3300017822	Freshwater Sediment	ALLHEPAGAGRIVPEIGVLGLPVQFGKPGERLVDVKDASSAAQATA
Ga0187825_100314761	3300017930	Freshwater Sediment	LIVERGALLHDALRTRGVVPKIGVFGLPIQFGKPCACLVEVKDASSAALATA
Ga0187879_103139861	3300017946	Peatland	ARDGVELILKRGALLHHAAGALRIVPQIGIFDLPVQLGKPRARLVDVKDASSAARPTA
Ga0187879_107298222	3300017946	Peatland	ARDGVELILKRGALLHHAAGALRIVPQIGIFDLPVQLGKPPARPVDVKDASSAARSTA
Ga0187783_101443381	3300017970	Tropical Peatland	RGALPHHAAGALGIVPQIRVFGLPVQLGKPRTRLVDIKDASSAARPTA
Ga0187781_103838391	3300017972	Tropical Peatland	RGAFLHHAAGARRIVPKIGIFGLPVQFGKPRARLVDVKDASSAAQPTA
Ga0187782_109618381	3300017975	Tropical Peatland	LDQRKLIVELLVDARERVELVVEGGALLHHAASALRIVPKCRILSLPVQLGKPRARLVDVKDASSAARRTA
Ga0187805_102778742	3300018007	Freshwater Sediment	QPAGALRIVPQIRIFGEVVQLREAGARLVEVKDASSAAPGTA
Ga0187857_100670042	3300018026	Peatland	ILERGALLHHAAGALRIVPESGVFGLPVQLGKPGARLVDVKDASSAARRTA
Ga0187883_101533711	3300018037	Peatland	KRGALLHHAAGALRIVPQIGIFDLPVQLGKPRARLVDVKDASSAARPTA
Ga0187855_101833942	3300018038	Peatland	CGALLHHPAGALLVVPQIGVFGLPVQLGKPRARLVDVKDASSAARTTA
Ga0187784_100687364	3300018062	Tropical Peatland	NRVELIFERGALLHHAAGALRIVPQIGVFGLPVQLGKPRARFVDVKDASSAARPTA
Ga0187784_101522941	3300018062	Tropical Peatland	ELLIERGAFLHHAARALGIVPKLGVFGLPVQLSQPCARLVDIKDASSAARPTA
Ga0187768_10784071	3300020150	Tropical Peatland	SVELIVERCALLHHAAGALRIVPQMGVFSLPVQLGKPRARFVDVKDASSAVRPTA
Ga0210399_103449731	3300020581	Soil	ALLHQPARPLRIVPKIGVFGLPVQFGKPRARLVEVKDASSAASVTA
Ga0210395_100055388	3300020582	Soil	LVDARERRKLLVERGALLHHPAGAWRIVPEIGVFGLPVQLGKPGARFVDVKDASSAVRRT
Ga0210395_113653641	3300020582	Soil	RALLHQPAGTLRIVPQIGIFGEVIELGEAGARLVEVKDASSAAPTTA
Ga0210401_104477291	3300020583	Soil	RSALLHHPARPRRVVPEIGVFGLPVQLGKAGARFVDVKDASSAVLKTA
Ga0213875_102319761	3300021388	Plant Roots	AGERVELIVERGALLHQPSSTLRIVPEIGVFGMPVQLGQPRLRLVDVKDASSAGRCPA
Ga0210387_112394561	3300021405	Soil	ALLHHPARPRRIVPEIGVFGLPVQLGKAGARFVDVKDASSAALRTA
Ga0210386_109094231	3300021406	Soil	ALLHQAAGALRVIPEVGVLGLPVQLGKPDARLVDVKDASSAVRRTA
Ga0208689_10183331	3300025459	Peatland	ELILERGALLHHAAGALRIVPEIGVFGLPVQLGKPRTRLVDVKDASSAARRTA
Ga0208603_10394542	3300027109	Forest Soil	GKLLVKRGALLHHAACPRRIVPEIGVFGLPVQLGKAGARFVDVKDASSAVLRTA
Ga0209330_11400212	3300027619	Forest Soil	AGNGSELILKRSALLHQAAGARRIVPEIGILGLPVQLGQPGARLVDVKDASSAARATA
Ga0209283_106325481	3300027875	Vadose Zone Soil	QRGALLHQPAGALGIVPQIGVFGEVVQLGEAGARLVEVKDASSAAPGTA
Ga0268266_103657031	3300028379	Switchgrass Rhizosphere	QRGELFLERGALLHHAARARGIVPEAGILSQCVQFIQPSACLVDVKDASSAAQRTA
Ga0302225_101652361	3300028780	Palsa	IVQFLIDPRERVQVVIERGPLLHDAAGALGVVPEIGVFGQPVQFGKPDARLVDVKDASSAVLPTA
Ga0302232_103808471	3300028789	Palsa	DPRERVQVVIERGPLLHDAAGALGVVPEIGVFGQPVQFGKPDARLVDVKDASSAVLPTA
Ga0308309_106425822	3300028906	Soil	ELLLDAGQCGELLVERGALLHQAARPLLIAPKVRIFGLTVQLGKPGTRLVDVKDASSAVRATA
Ga0311370_116415262	3300030503	Palsa	KRGALLHDAAGMLRIVPQIGIFGLPVQLAEPRARLVDVKDASSAV
Ga0311357_105452341	3300030524	Palsa	LIVKRGALLHDAAGMLRIVPQIGIFGLPVQLAEPRARLVDVKDASSAV
Ga0311357_114902661	3300030524	Palsa	LHDAAGTLGIVPEIGVFGQPVQFGKPHARLVDVKDASSAVPLTA
Ga0311356_101582192	3300030617	Palsa	LLFDAGKRAELVVERGALLHHAAGGLRIVPEAWVFGLPVQLGKPGARLVDVKDASSAAPRTA
Ga0170834_1101448562	3300031057	Forest Soil	LVERGALLHQPARPLRIVPKIGVFGLPVQFGKPRPRLVEVKDASSAASATA
Ga0265760_100144921	3300031090	Soil	VELLFDAGERRKLLVERGALLHHPARPRRVVPKIGVFGLPVQLGKAGARFVDVKDASSAVLKTA
Ga0318573_105360081	3300031564	Soil	LVERGALLHQAARPLRVVPEVGVFGLAVQFGKPRARLVDVKDASLAARRTA
Ga0310915_100617741	3300031573	Soil	GELLVERGALLHQPARPLRIIPKIGVFGLPVQFGKPRARLVEVKDASSAAPATA
Ga0310915_101590461	3300031573	Soil	VELLIHPSQSSELLVERGALLHQPARPLRIVPKIGIFGLPVQLGKPRTRLVEVKDASSAAPATA
Ga0318561_106257111	3300031679	Soil	LLHQPARPLRIVPKIGIFGLPVQLGKPRTRLVEVKDASSAAPATA
Ga0307476_108985252	3300031715	Hardwood Forest Soil	QGGELLVERGALLHQPARTLRIVPKIGVFDLPVQFGKPRARLVEVKDASSAAPATA
Ga0307469_100128643	3300031720	Hardwood Forest Soil	LKRGALLHQPAGTLGIVPQIGIFGEVIELSETGARLVEVKDASSAAQGTA
Ga0318503_100169401	3300031794	Soil	LLHQPARPLRIIPKIGVFGLPVQFGKPRARLVEVKDASSAAPATA
Ga0307478_102786622	3300031823	Hardwood Forest Soil	LHQPARTLRIVPKIGVFDLPVQFGKPRARLVEVKDASSAASVTA
Ga0310917_102642582	3300031833	Soil	ELLIHPSQSSELLVERGALLHQPARPLRIVPKIGIFGLPVQLGKPRTRLVEVKDASSAAPATA
Ga0306925_108144472	3300031890	Soil	NGGKLVLECSALLHEPTGAGRIVPEIGVFGLLVQFRKPGARFVDVKDASSAARRTA
Ga0306923_106504062	3300031910	Soil	LLHPAQGGELLVERGALLHQPARPLRIIPKIGVFGLPVQFGKPRARLVEVKDASSAAPAT
Ga0306921_106882271	3300031912	Soil	LLDPPDRRELILQCRALLHQPAGALRIVPEIGILGLPVQFGKARTRFVDVKDASSAARPT
Ga0310912_114425161	3300031941	Soil	VELLLDAGNSAELILKRRALLHQPACPLRIVPEIGVFGLPVQLGKPRARLVDVKDASSAARPTA
Ga0318562_101146742	3300032008	Soil	LHQAAGPLRIVPQIGVFRLSIELGKPGARLVDVKDASSAARATA
Ga0318570_100150702	3300032054	Soil	ALLHQPARPLRIIPKIGVFGLPVQFGKPRARLVEVKDASSAAPATA
Ga0318513_100335451	3300032065	Soil	RGALLHQPARPLRIIPKIGVFGLPVQFGKPRARLVEVKDASSAAPATA
Ga0318553_102334271	3300032068	Soil	PPQGGELLVERGALLHQPARPLRIIPKIGVFGLPVQFGKPRARLVEVKDASSAAPATA
Ga0306924_123266091	3300032076	Soil	HLIVELLFDARNGSELILKRGSLLHEPAGALRIVPEIGIFGLPVQLGKARARLFDVKDASSAARPTA
Ga0318540_103024281	3300032094	Soil	SELLVERGALLHQPARPLRIVPKIGIFGLPVQLGKPRTRLVEVKDASSAAPATA
Ga0311301_107067921	3300032160	Peatlands Soil	LHQAARPLRIVPQVGVFGEVIEFGEAGRRLVEVKDASSAARATA
Ga0311301_121103481	3300032160	Peatlands Soil	AFLHHAAGALRIVPEFRVFRLSVQFGKPRARLVDVKDASSAA
Ga0306920_1008348031	3300032261	Soil	LLLDPPDRRELILQCRALLHQPAGALRIVPEIGILGLPVQFGKARTRFVDVKDASSAARPTA
Ga0306920_1026547902	3300032261	Soil	RGPLLHEPAGALRIVPEIGIFGLPVQLGKARARLFDVKDASSAARPTA
Ga0335078_104987202	3300032805	Soil	LHAGERGKLLVERGALLHQPAGALGIVPQIGVFGLLVQLGQPGARFVDVKDASSAVRATA
Ga0335069_120874832	3300032893	Soil	LHQPAGALGIVPEIGIFGLLVQLGQPDARFVDVKDASSAAQETA
Ga0335074_103649102	3300032895	Soil	VEPGAFLHHAAGALRIVPQLGIFGLPVQLGEAGARLVDVKGASSAARPTA
Ga0335073_103522902	3300033134	Soil	ARERGELLVKRSALLHQPAGALRIVPEIGVFGLLIQLGEPGARFVDVKDASSAVRATA
Ga0318519_110065392	3300033290	Soil	LECSALLHEPTGAGRIVPEIGVFGLLVQFGKPGARFVDVKDASSAARRTA
Ga0334828_025336_3_194	3300033822	Soil	ELLFDAGQRSELLIERSALLHQPAGPLRIVPQAGIFGLPVQLGQSRARSVDVKDASSAAPQTA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092528

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences