Metagenome / Metatranscriptome Family F092464

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092464
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	46 residues
Representative Sequence	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAA
Number of Associated Samples	92
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	98.13 %
% of genes from short scaffolds (< 2000 bps)	83.18 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (74.766 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.383 % of family members)
Environment Ontology (ENVO)	Unclassified (50.467 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (48.598 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 80.43% β-sheet: 0.00% Coil/Unstructured: 19.57%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00871	Acetate_kinase	32.71
PF00274	Glycolytic	14.95
PF12698	ABC2_membrane_3	11.21
PF09364	XFP_N	6.54
PF01515	PTA_PTB	3.74
PF09361	Phasin_2	2.80
PF00589	Phage_integrase	1.87
PF03976	PPK2	1.87
PF01061	ABC2_membrane	1.87
PF01594	AI-2E_transport	1.87
PF06305	LapA_dom	0.93
PF00011	HSP20	0.93
PF00196	GerE	0.93
PF16576	HlyD_D23	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0282	Acetate kinase	Energy production and conversion [C]	32.71
COG3426	Butyrate kinase	Energy production and conversion [C]	32.71
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	14.95
COG0280	Phosphotransacetylase (includes Pta, EutD and phosphobutyryltransferase)	Energy production and conversion [C]	3.74
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.87
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	1.87
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.77 %
Unclassified	root	N/A	25.23 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.77 %
Unclassified	root	N/A	25.23 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	74.77 %
Unclassified	root	N/A	25.23 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	50.47 %
Unclassified	root	N/A	25.23 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	47.66 %
Unclassified	root	N/A	25.23 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39.25 %
Unclassified	root	N/A	25.23 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	6.54 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	12.15 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.61 %
Rhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	2.80 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	10.28 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.61 %
Rhizobium/Agrobacterium group	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group	1.87 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.61 %
Rhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium	1.87 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.23 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.61 %
Rhizobium mesoamericanum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mesoamericanum	1.87 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000550\|F24TB_10707240	Not Available	839	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10079447	Not Available	823	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10023908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1457	Open in IMG/M
3300001867\|JGI12627J18819_10041791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1913	Open in IMG/M
3300001867\|JGI12627J18819_10137872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	997	Open in IMG/M
3300004268\|Ga0066398_10003584	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1782	Open in IMG/M
3300004633\|Ga0066395_10341777	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	829	Open in IMG/M
3300005184\|Ga0066671_10256835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1079	Open in IMG/M
3300005332\|Ga0066388_101857145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1074	Open in IMG/M
3300005332\|Ga0066388_103863897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	764	Open in IMG/M
3300005363\|Ga0008090_15463710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1583	Open in IMG/M
3300005363\|Ga0008090_15828783	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1049	Open in IMG/M
3300005439\|Ga0070711_101861153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	528	Open in IMG/M
3300005447\|Ga0066689_10271424	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300005471\|Ga0070698_101245653	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	693	Open in IMG/M
3300005518\|Ga0070699_100012198	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7416	Open in IMG/M
3300005555\|Ga0066692_10825742	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005713\|Ga0066905_100117612	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1846	Open in IMG/M
3300005713\|Ga0066905_102225733	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	511	Open in IMG/M
3300005764\|Ga0066903_107997603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	542	Open in IMG/M
3300006028\|Ga0070717_10457468	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1151	Open in IMG/M
3300006175\|Ga0070712_101440182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	601	Open in IMG/M
3300006853\|Ga0075420_100421764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1153	Open in IMG/M
3300006903\|Ga0075426_10430853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	975	Open in IMG/M
3300009012\|Ga0066710_101668266	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300009090\|Ga0099827_11408737	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300009100\|Ga0075418_10261444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1844	Open in IMG/M
3300010043\|Ga0126380_11075247	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300010046\|Ga0126384_10954017	Not Available	778	Open in IMG/M
3300010326\|Ga0134065_10488402	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	511	Open in IMG/M
3300010358\|Ga0126370_10695194	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300010359\|Ga0126376_11690084	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300010359\|Ga0126376_12576660	All Organisms → cellular organisms → Bacteria	557	Open in IMG/M
3300010360\|Ga0126372_10063302	All Organisms → cellular organisms → Bacteria	2585	Open in IMG/M
3300010361\|Ga0126378_10758287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1081	Open in IMG/M
3300010361\|Ga0126378_10994718	All Organisms → cellular organisms → Bacteria	943	Open in IMG/M
3300010366\|Ga0126379_11135784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	887	Open in IMG/M
3300010371\|Ga0134125_10245182	Not Available	1991	Open in IMG/M
3300010398\|Ga0126383_11860085	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300010398\|Ga0126383_12220453	All Organisms → cellular organisms → Bacteria → Proteobacteria	635	Open in IMG/M
3300012210\|Ga0137378_10610971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1000	Open in IMG/M
3300012349\|Ga0137387_10089671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2127	Open in IMG/M
3300012355\|Ga0137369_10805329	Not Available	640	Open in IMG/M
3300012361\|Ga0137360_11178309	All Organisms → cellular organisms → Bacteria	662	Open in IMG/M
3300012971\|Ga0126369_11840777	All Organisms → cellular organisms → Bacteria	694	Open in IMG/M
3300012989\|Ga0164305_10633598	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300016270\|Ga0182036_10078247	Not Available	2180	Open in IMG/M
3300016270\|Ga0182036_11161652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300016341\|Ga0182035_10036337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mesoamericanum	3234	Open in IMG/M
3300016341\|Ga0182035_11194109	Not Available	679	Open in IMG/M
3300016357\|Ga0182032_10835837	Not Available	780	Open in IMG/M
3300016357\|Ga0182032_11759623	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300016371\|Ga0182034_10070688	Not Available	2393	Open in IMG/M
3300016404\|Ga0182037_10129187	Not Available	1872	Open in IMG/M
3300016422\|Ga0182039_11414483	Not Available	632	Open in IMG/M
3300016445\|Ga0182038_11027341	Not Available	731	Open in IMG/M
3300018433\|Ga0066667_10707170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	846	Open in IMG/M
3300021560\|Ga0126371_12463502	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300025910\|Ga0207684_11343086	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300025922\|Ga0207646_10045174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3954	Open in IMG/M
3300026507\|Ga0257165_1114037	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300026557\|Ga0179587_10216249	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300027874\|Ga0209465_10529983	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300031543\|Ga0318516_10769701	Not Available	544	Open in IMG/M
3300031546\|Ga0318538_10022014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae → Rhizobium/Agrobacterium group → Rhizobium → Rhizobium mesoamericanum	2857	Open in IMG/M
3300031549\|Ga0318571_10022353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1671	Open in IMG/M
3300031549\|Ga0318571_10047678	Not Available	1265	Open in IMG/M
3300031564\|Ga0318573_10128650	Not Available	1317	Open in IMG/M
3300031572\|Ga0318515_10042314	All Organisms → cellular organisms → Bacteria → Proteobacteria	2266	Open in IMG/M
3300031573\|Ga0310915_10088269	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2074	Open in IMG/M
3300031573\|Ga0310915_10732058	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	697	Open in IMG/M
3300031640\|Ga0318555_10475343	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031668\|Ga0318542_10594115	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	577	Open in IMG/M
3300031679\|Ga0318561_10498088	All Organisms → cellular organisms → Bacteria	671	Open in IMG/M
3300031680\|Ga0318574_10006180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5139	Open in IMG/M
3300031681\|Ga0318572_10089716	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1719	Open in IMG/M
3300031763\|Ga0318537_10165597	Not Available	823	Open in IMG/M
3300031768\|Ga0318509_10116926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1450	Open in IMG/M
3300031771\|Ga0318546_10529613	Not Available	827	Open in IMG/M
3300031777\|Ga0318543_10002886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5287	Open in IMG/M
3300031777\|Ga0318543_10372568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	639	Open in IMG/M
3300031779\|Ga0318566_10066237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1739	Open in IMG/M
3300031781\|Ga0318547_10066836	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1981	Open in IMG/M
3300031782\|Ga0318552_10084326	Not Available	1552	Open in IMG/M
3300031797\|Ga0318550_10028274	Not Available	2395	Open in IMG/M
3300031819\|Ga0318568_10051835	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2369	Open in IMG/M
3300031819\|Ga0318568_10933444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	536	Open in IMG/M
3300031832\|Ga0318499_10173350	Not Available	841	Open in IMG/M
3300031859\|Ga0318527_10124773	Not Available	1069	Open in IMG/M
3300031860\|Ga0318495_10087910	All Organisms → cellular organisms → Bacteria	1393	Open in IMG/M
3300031879\|Ga0306919_10069707	All Organisms → cellular organisms → Bacteria	2391	Open in IMG/M
3300031880\|Ga0318544_10032597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1817	Open in IMG/M
3300031941\|Ga0310912_10094716	All Organisms → cellular organisms → Bacteria → Proteobacteria	2188	Open in IMG/M
3300031946\|Ga0310910_10005303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7683	Open in IMG/M
3300031947\|Ga0310909_11328181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	577	Open in IMG/M
3300031954\|Ga0306926_10613549	Not Available	1327	Open in IMG/M
3300031954\|Ga0306926_12745068	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300031959\|Ga0318530_10042995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhizobiaceae	1673	Open in IMG/M
3300032009\|Ga0318563_10635166	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300032044\|Ga0318558_10043924	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1950	Open in IMG/M
3300032052\|Ga0318506_10269599	Not Available	754	Open in IMG/M
3300032054\|Ga0318570_10258085	Not Available	790	Open in IMG/M
3300032060\|Ga0318505_10085919	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1407	Open in IMG/M
3300032076\|Ga0306924_10189245	Not Available	2362	Open in IMG/M
3300032090\|Ga0318518_10132980	Not Available	1257	Open in IMG/M
3300032261\|Ga0306920_100620677	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1598	Open in IMG/M
3300033290\|Ga0318519_10369290	Not Available	850	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.20%
Host-Associated	Host-Associated	2.80%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	97.20%
Plants	Host-Associated → Plants	2.80%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.80%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	80.37%
Loam	Environmental → Terrestrial → Soil → Loam	16.82%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	53.27%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.54%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.80%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.87%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.38%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.15%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.54%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.80%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.80%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.87%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.87%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005447	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005555	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F24TB_107072401	3300000550	Soil	MRRALIAVLLAGAVAVSTSTEAQARWGRGWGWGIGAFAIGALLGAALWRPAYAYGYPAYG
AF_2010_repII_A1DRAFT_100794472	3300000597	Forest Soil	MRRALIALLLAGAVAVSTTRPAEARWGWGGWGWGLGAFAI
AF_2010_repII_A001DRAFT_100239081	3300000793	Forest Soil	MKRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFA
JGI12627J18819_100417914	3300001867	Forest Soil	MRRALIAVLLAGAVALSTTKPAEARWGWGWGWGLGAFAIGALIG
JGI12627J18819_101378722	3300001867	Forest Soil	MRRALIVVLLAGAVAVSSAKPAEARWGWGWGIGAFAVGALLGAALWRPAY
Ga0066398_100035841	3300004268	Tropical Forest Soil	MRRTLIALLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPA
Ga0066395_103417771	3300004633	Tropical Forest Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYS
Ga0066671_102568352	3300005184	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLSARSPSAR*
Ga0066388_1018571451	3300005332	Tropical Forest Soil	MRRALIAVLLAAAVAVSTTKPAEAQWGWGRGWGWGLGAFAVGALIGAALW
Ga0066388_1038638973	3300005332	Tropical Forest Soil	MRRALIAVLLAGAMAVSTTKPAEARWGWGWGWGLGAFAIGALIGAA
Ga0008090_154637103	3300005363	Tropical Rainforest Soil	MRRALIAVLLAGAIAVSTAKPAEARWGWGWGWGLGAFAIGALIGAALW
Ga0008090_158287831	3300005363	Tropical Rainforest Soil	MRRALIAILLAGAVAVGTTKPAEARWGWGWGWGLGAFAIGALIGAALWRP
Ga0070711_1018611531	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALIVVLLAGAVAVSTVKPAEARWGWGWGIGAFAIGALLGAALWRPAYAYPAYGYGY
Ga0066689_102714242	3300005447	Soil	MRRALIAMLLAGAVAVSTTKPAEARWGGWGWGFGAFAIGALIGAA
Ga0070698_1012456531	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYS
Ga0070699_1000121988	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIG
Ga0066692_108257422	3300005555	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALI
Ga0066905_1001176122	3300005713	Tropical Forest Soil	MRRALIALLLAGAVAVSTTRPAEARWGWGGWGWGL
Ga0066905_1022257331	3300005713	Tropical Forest Soil	MRRALIALLLAGAVAVSTTRPAEARWGWGGWGWGLGAFAIGALI
Ga0066903_1079976031	3300005764	Tropical Forest Soil	MRRALIAVLLAGALAVSTTKPAEARWGWGWGWGLGAFA
Ga0070717_104574683	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALIALLLAGAVAVSTTKPAEARWGWGGGWGWGIGAFAIGALL
Ga0070712_1014401822	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALIVVLLAGAVAVSTVKPAEARWGWGWGIGAFAIGALLGAALWRPAYAYPAYGYG
Ga0075420_1004217641	3300006853	Populus Rhizosphere	LIAALLAGAVAVRDDGGAGALGLRGGWGWGIGAFAIGALLGAALWRPAYAYG
Ga0075426_104308531	3300006903	Populus Rhizosphere	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAVGALIGAALWRPAYSYYYPAY
Ga0066710_1016682661	3300009012	Grasslands Soil	MRRALIAVLLAGAVAVSTSTQAQARWGWGGGWGWGI
Ga0099827_114087372	3300009090	Vadose Zone Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAVGALIG
Ga0075418_102614441	3300009100	Populus Rhizosphere	MRRALIAALLAGAVAVSATTEAQARWGWRGGWGWGIGAFAIGALLG
Ga0126380_110752472	3300010043	Tropical Forest Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGGWGWGLGAFAIGALIGAALWR
Ga0126384_109540172	3300010046	Tropical Forest Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRP
Ga0134065_104884022	3300010326	Grasslands Soil	MRRALIAMLLAGAVAVSTTKPAEARWGGWGWGFGAFAIGALI
Ga0126370_106951942	3300010358	Tropical Forest Soil	MRRALIAVLLAGAMAVSTTKPAEARWGWGWGWGLGAFAIGA
Ga0126376_116900842	3300010359	Tropical Forest Soil	MRRTLIVVLLAAAVAVSTAKPAEARWGWGGWGWGLGAFAIGALIGAAL
Ga0126376_125766602	3300010359	Tropical Forest Soil	MRRALIALLLAGAVAVSTTKPAEARGGWGWGWGLGAFAIG
Ga0126372_100633024	3300010360	Tropical Forest Soil	MRRALIAVLLAGAMAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWR
Ga0126378_107582871	3300010361	Tropical Forest Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAA
Ga0126378_109947182	3300010361	Tropical Forest Soil	MRRALIAVLLAGAMAVSTTKPAEARWGWGWGWGLG
Ga0126379_111357842	3300010366	Tropical Forest Soil	MKRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAVGALIGAALWR
Ga0134125_102451821	3300010371	Terrestrial Soil	MRRALIVVLLAGAVAVSTVKPAEARWGWGWGIGAFAIGALLGAALWRPAYS
Ga0126383_118600851	3300010398	Tropical Forest Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYSYYY
Ga0126383_122204531	3300010398	Tropical Forest Soil	MRRALIAVLLAGAVAVSTTRPGEARWGGGGWGWGLGAF
Ga0137378_106109712	3300012210	Vadose Zone Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPVYAYY*
Ga0137387_100896711	3300012349	Vadose Zone Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYA
Ga0137369_108053291	3300012355	Vadose Zone Soil	MRRALIAVLLAGAVAVSTSTEAQARWGRGWGWGWGIGAFAIGALLGAALWRPAYAYGYPA
Ga0137360_111783092	3300012361	Vadose Zone Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGGWGWGLGAFAIGALIGAALWRPAYG
Ga0126369_118407772	3300012971	Tropical Forest Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAV
Ga0164305_106335981	3300012989	Soil	MRRALIAVLLAGALAVSTTKPAEARWGWGWGWGLGAFAIGALIGAAL
Ga0182036_100782471	3300016270	Soil	MRRALIALLLAGAVAVSTTILPESLWGWGWGWGLGAFAIVELIGAALWRPAY
Ga0182036_111616521	3300016270	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGA
Ga0182035_100363371	3300016341	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGA
Ga0182035_111941092	3300016341	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGA
Ga0182032_108358371	3300016357	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIG
Ga0182032_117596232	3300016357	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYSY
Ga0182034_100706881	3300016371	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAA
Ga0182037_101291874	3300016404	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIG
Ga0182039_114144831	3300016422	Soil	MRRALIAVLLASAVAVSTTKPAEARWGWGWGWGLGAFAI
Ga0182038_110273411	3300016445	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALW
Ga0066667_107071703	3300018433	Grasslands Soil	MRRALIAVLLAGAVALSTTKPAEARWGWGWGWGLGAFAIGALIGAA
Ga0126371_124635022	3300021560	Tropical Forest Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAF
Ga0207684_113430861	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGA
Ga0207646_100451745	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MRRALIAVLLAGAVALSTTKPAEARWGWGWGWGLG
Ga0257165_11140372	3300026507	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGGWGWGLGAFAIGA
Ga0179587_102162492	3300026557	Vadose Zone Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFA
Ga0209465_105299831	3300027874	Tropical Forest Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAA
Ga0318516_107697011	3300031543	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIG
Ga0318538_100220143	3300031546	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYY
Ga0318571_100223531	3300031549	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIG
Ga0318571_100476781	3300031549	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAI
Ga0318573_101286501	3300031564	Soil	MRRALIAVLLACAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYYYPAY
Ga0318515_100423143	3300031572	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGLGAFAIG
Ga0310915_100882693	3300031573	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYSYYY
Ga0310915_107320583	3300031573	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAAL
Ga0318555_104753432	3300031640	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLG
Ga0318542_105941152	3300031668	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYYYPAYGYY
Ga0318561_104980881	3300031679	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYSYY
Ga0318574_100061805	3300031680	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAI
Ga0318572_100897161	3300031681	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAF
Ga0318537_101655971	3300031763	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGAL
Ga0318509_101169263	3300031768	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGAL
Ga0318546_105296131	3300031771	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALI
Ga0318543_100028864	3300031777	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYYYPAYGY
Ga0318543_103725682	3300031777	Soil	MRRALIAVLLACAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYYY
Ga0318566_100662373	3300031779	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGA
Ga0318547_100668361	3300031781	Soil	MRRALIAVLLACAVAVSTTKPAEARWGWGWGLGAFAIGALI
Ga0318552_100843263	3300031782	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSY
Ga0318550_100282744	3300031797	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALW
Ga0318568_100518351	3300031819	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAY
Ga0318568_109334442	3300031819	Soil	MRRALIAVLLACAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYY
Ga0318499_101733502	3300031832	Soil	MRRALIAVLLACAVAVSTTKPAEARWGWGWGWGLGAFAIGA
Ga0318527_101247731	3300031859	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYY
Ga0318495_100879101	3300031860	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPA
Ga0306919_100697073	3300031879	Soil	MRRALIAVLLAGAVAVATTKPAEARWGWGWGWGIGAFAIG
Ga0318544_100325971	3300031880	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYSYY
Ga0310912_100947161	3300031941	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYSYYY
Ga0310910_100053035	3300031946	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGWGLGAFAIGALIGAAL
Ga0310909_113281811	3300031947	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGLGAFAIGALIGAALWRPAYSYYYP
Ga0306926_106135491	3300031954	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAYSY
Ga0306926_127450681	3300031954	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGWGLGAFAIG
Ga0318530_100429953	3300031959	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGWGLGAFAIGALIG
Ga0318563_106351662	3300032009	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAAL
Ga0318558_100439243	3300032044	Soil	MRRALIAVLLAGAIAVSTTKPAEARWGWGWGLGAFAIGALIGAALW
Ga0318506_102695993	3300032052	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLGAFAI
Ga0318570_102580853	3300032054	Soil	MRRALIAVLLAGAVAVSTTKPAEARWGWGWGWGLG
Ga0318505_100859193	3300032060	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRPAY
Ga0306924_101892454	3300032076	Soil	MRRALIALLLAGAVAVSTTKPAEARWGWGWGLGAF
Ga0318518_101329801	3300032090	Soil	MRRALIAVLLACAVAVSTTKPAEARWGWGWGLGAFAI
Ga0306920_1006206773	3300032261	Soil	MRRALIAILLAGAVAVSTTKPAEARWGWGWGWGLGAFAIGALIGAALWRP
Ga0318519_103692902	3300033290	Soil	MRRALIAVLLACAVAVSTTKPAEARWGWGWGLGAFAIGALIGAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092464

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences