Metagenome / Metatranscriptome Family F092416

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F092416
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	59 residues
Representative Sequence	MATTLTRERATGFIDHAKDSEIPGWEVAVSRLVRELVCAFFIAMAVMWVVTSIAGIFR
Number of Associated Samples	67
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.36 %
% of genes near scaffold ends (potentially truncated)	22.43 %
% of genes from short scaffolds (< 2000 bps)	94.39 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (60.748 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.664 % of family members)
Environment Ontology (ENVO)	Unclassified (54.206 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (69.159 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.98% β-sheet: 0.00% Coil/Unstructured: 43.02%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF04909	Amidohydro_2	29.91
PF00248	Aldo_ket_red	24.30
PF13744	HTH_37	12.15
PF04773	FecR	11.21
PF14330	DUF4387	10.28
PF07287	AtuA	1.87
PF07110	EthD	1.87
PF00378	ECH_1	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	60.75 %
Unclassified	root	N/A	39.25 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	60.75 %
Unclassified	root	N/A	39.25 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	60.75 %
Unclassified	root	N/A	39.25 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	26.17 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	18.69 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3.74 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.93 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	0.93 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.93 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.93 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.93 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	0.93 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.93 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.93 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	0.93 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.93 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.93 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	0.93 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	39.25 %
Streptomyces sp. SN-593	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. SN-593	0.93 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.93 %
Rhodobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	0.93 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100612174	All Organisms → cellular organisms → Bacteria	681	Open in IMG/M
3300002245\|JGIcombinedJ26739_100764135	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	846	Open in IMG/M
3300004152\|Ga0062386_101259412	Not Available	615	Open in IMG/M
3300004631\|Ga0058899_11496508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	572	Open in IMG/M
3300004635\|Ga0062388_101692508	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300005538\|Ga0070731_10206886	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300005602\|Ga0070762_10118459	All Organisms → cellular organisms → Bacteria	1553	Open in IMG/M
3300005602\|Ga0070762_10982741	All Organisms → cellular organisms → Bacteria	578	Open in IMG/M
3300005921\|Ga0070766_10607697	All Organisms → cellular organisms → Bacteria → Proteobacteria	735	Open in IMG/M
3300005921\|Ga0070766_11316587	All Organisms → cellular organisms → Bacteria → Proteobacteria	501	Open in IMG/M
3300006176\|Ga0070765_100639515	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300009525\|Ga0116220_10101743	Not Available	1217	Open in IMG/M
3300010048\|Ga0126373_10575626	All Organisms → cellular organisms → Bacteria	1176	Open in IMG/M
3300010339\|Ga0074046_10004170	All Organisms → cellular organisms → Bacteria	11870	Open in IMG/M
3300010358\|Ga0126370_11122509	Not Available	726	Open in IMG/M
3300011120\|Ga0150983_11607397	Not Available	780	Open in IMG/M
3300011120\|Ga0150983_11898624	Not Available	814	Open in IMG/M
3300011120\|Ga0150983_12356964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300011120\|Ga0150983_13262990	Not Available	797	Open in IMG/M
3300011120\|Ga0150983_15378284	All Organisms → cellular organisms → Bacteria → Terrabacteria group	641	Open in IMG/M
3300012202\|Ga0137363_10115005	All Organisms → cellular organisms → Bacteria	2067	Open in IMG/M
3300012361\|Ga0137360_10228791	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300012363\|Ga0137390_11606497	All Organisms → cellular organisms → Bacteria → Terrabacteria group	588	Open in IMG/M
3300014501\|Ga0182024_10749932	Not Available	1197	Open in IMG/M
3300014501\|Ga0182024_11577281	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300017823\|Ga0187818_10054222	All Organisms → cellular organisms → Bacteria	1724	Open in IMG/M
3300018012\|Ga0187810_10262260	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300020579\|Ga0210407_11093518	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300020579\|Ga0210407_11332253	Not Available	535	Open in IMG/M
3300020581\|Ga0210399_10659167	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300020582\|Ga0210395_11368427	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300020583\|Ga0210401_10431533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	1180	Open in IMG/M
3300020583\|Ga0210401_11248569	Not Available	601	Open in IMG/M
3300020583\|Ga0210401_11482901	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300021168\|Ga0210406_10881299	Not Available	675	Open in IMG/M
3300021171\|Ga0210405_10350701	Not Available	1165	Open in IMG/M
3300021171\|Ga0210405_10636745	All Organisms → cellular organisms → Bacteria	828	Open in IMG/M
3300021178\|Ga0210408_10588281	All Organisms → cellular organisms → Bacteria	882	Open in IMG/M
3300021180\|Ga0210396_11098877	Not Available	670	Open in IMG/M
3300021401\|Ga0210393_10006512	All Organisms → cellular organisms → Bacteria	9182	Open in IMG/M
3300021401\|Ga0210393_10715008	Not Available	817	Open in IMG/M
3300021403\|Ga0210397_10954602	Not Available	665	Open in IMG/M
3300021404\|Ga0210389_10382359	Not Available	1107	Open in IMG/M
3300021405\|Ga0210387_11426143	Not Available	595	Open in IMG/M
3300021405\|Ga0210387_11458430	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300021405\|Ga0210387_11604699	Not Available	554	Open in IMG/M
3300021406\|Ga0210386_11585235	All Organisms → cellular organisms → Bacteria → Terrabacteria group	544	Open in IMG/M
3300021432\|Ga0210384_10524045	Not Available	1066	Open in IMG/M
3300021475\|Ga0210392_11463216	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300021560\|Ga0126371_10048023	All Organisms → cellular organisms → Bacteria	4076	Open in IMG/M
3300021560\|Ga0126371_12591684	Not Available	614	Open in IMG/M
3300022498\|Ga0242644_1031508	Not Available	572	Open in IMG/M
3300022507\|Ga0222729_1060247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	542	Open in IMG/M
3300022507\|Ga0222729_1066403	Not Available	525	Open in IMG/M
3300022509\|Ga0242649_1060663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	550	Open in IMG/M
3300022525\|Ga0242656_1102527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	562	Open in IMG/M
3300022525\|Ga0242656_1132757	Not Available	513	Open in IMG/M
3300022530\|Ga0242658_1208550	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	535	Open in IMG/M
3300022531\|Ga0242660_1176339	Not Available	575	Open in IMG/M
3300022531\|Ga0242660_1185565	Not Available	564	Open in IMG/M
3300022533\|Ga0242662_10303200	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300022717\|Ga0242661_1115820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300022717\|Ga0242661_1127383	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	554	Open in IMG/M
3300022718\|Ga0242675_1091325	Not Available	574	Open in IMG/M
3300022722\|Ga0242657_1092538	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300022724\|Ga0242665_10373673	Not Available	515	Open in IMG/M
3300022726\|Ga0242654_10203169	Not Available	690	Open in IMG/M
3300022726\|Ga0242654_10353365	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300022726\|Ga0242654_10407928	Not Available	523	Open in IMG/M
3300022726\|Ga0242654_10408760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300026557\|Ga0179587_10253438	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1127	Open in IMG/M
3300027869\|Ga0209579_10046131	All Organisms → cellular organisms → Bacteria → Proteobacteria	2330	Open in IMG/M
3300027908\|Ga0209006_10241699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1556	Open in IMG/M
3300027908\|Ga0209006_10456402	Not Available	1070	Open in IMG/M
3300027908\|Ga0209006_10561625	All Organisms → cellular organisms → Bacteria → Proteobacteria	946	Open in IMG/M
3300028906\|Ga0308309_10104754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2195	Open in IMG/M
3300028906\|Ga0308309_11074171	All Organisms → cellular organisms → Bacteria	696	Open in IMG/M
3300030730\|Ga0307482_1090172	Not Available	822	Open in IMG/M
3300030730\|Ga0307482_1146158	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300030923\|Ga0138296_1198757	Not Available	609	Open in IMG/M
3300030923\|Ga0138296_1428101	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300030923\|Ga0138296_1574278	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300030923\|Ga0138296_1823394	Not Available	544	Open in IMG/M
3300030937\|Ga0138302_1180328	Not Available	716	Open in IMG/M
3300030937\|Ga0138302_1248070	Not Available	548	Open in IMG/M
3300030937\|Ga0138302_1712621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	660	Open in IMG/M
3300030937\|Ga0138302_1752702	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	617	Open in IMG/M
3300030962\|Ga0138297_1370873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1149	Open in IMG/M
3300030998\|Ga0073996_12422121	All Organisms → cellular organisms → Bacteria → Terrabacteria group	522	Open in IMG/M
3300031128\|Ga0170823_11472320	Not Available	921	Open in IMG/M
3300031128\|Ga0170823_13323088	Not Available	572	Open in IMG/M
3300031231\|Ga0170824_106306201	Not Available	1186	Open in IMG/M
3300031446\|Ga0170820_14952798	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	584	Open in IMG/M
3300031474\|Ga0170818_113239081	Not Available	606	Open in IMG/M
3300031708\|Ga0310686_112556399	Not Available	857	Open in IMG/M
3300031708\|Ga0310686_113951882	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300031708\|Ga0310686_116003146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1814	Open in IMG/M
3300031715\|Ga0307476_10271069	Not Available	1242	Open in IMG/M
3300031718\|Ga0307474_11129213	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300031823\|Ga0307478_10148941	All Organisms → cellular organisms → Bacteria	1856	Open in IMG/M
3300031823\|Ga0307478_10199209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Rhodobiaceae	1610	Open in IMG/M
3300031823\|Ga0307478_10746735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	819	Open in IMG/M
3300031823\|Ga0307478_11038062	Not Available	685	Open in IMG/M
3300031823\|Ga0307478_11133695	Not Available	652	Open in IMG/M
3300031823\|Ga0307478_11777358	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300031962\|Ga0307479_11798034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. SN-593	565	Open in IMG/M
3300032180\|Ga0307471_103790297	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.26%
Aquatic	Environmental → Aquatic	3.74%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.26%
Freshwater	Environmental → Aquatic → Freshwater	3.74%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.57%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.74%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.80%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.55%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.89%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.08%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	1.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.87%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.66%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	11.21%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.35%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	4.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.80%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	1.87%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.87%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.87%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	1.87%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022509	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022531	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-28-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022718	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022722	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-12-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030962	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030998	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-3A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1006121742	3300000364	Soil	MATTSIIRNRTTEHSVGFIDHAKDSEIPGWEVALDRLGRELVCAFFVAMAVMWVVTSITGIFG*
JGIcombinedJ26739_1007641351	3300002245	Forest Soil	MATARISRRVTEIQSGGFIDHAKDSEIPGWELALNRLTGELVTAXFIAMAVMWVVTMIAGIFA*
Ga0062386_1012594121	3300004152	Bog Forest Soil	MATTLTRVRPAAIHSVRLIDHAKDSEIPGWEVALDRLVGELVCAFFVAMAVMWVVTSIASIF
Ga0058899_114965082	3300004631	Forest Soil	MATTFTRERAPSFIDHAKDSEIPVWEVAIDRLARELVCAFFVAMAVMWVVTSIAGIFG*
Ga0062388_1016925082	3300004635	Bog Forest Soil	MATTFTRPRATEIQSVGLIDHAKDSERPGWEVAVDRLAGELVAAFFVAMAVMWVVTTITGIFG*
Ga0070731_102068864	3300005538	Surface Soil	TTLIRNRTTGIHSVGLIDHARASEIPGWEVALKRLTGELVTAFFIAMAVMWVVTVIAGIFA*
Ga0070762_101184593	3300005602	Soil	MATSFTRERAPGFIDHAKDSEIPGWEVAVDRLAHELVCAFFVAMAVMWVVTSVAGIFG*
Ga0070762_109827411	3300005602	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLTGELVAAFFIAMAVMWVVTTIAGIFA*
Ga0070766_106076971	3300005921	Soil	PMATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLAGELVAAFFIAMAVMWVVTMIADVFA*
Ga0070766_113165872	3300005921	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLTGELVAAFFIAMALMWVVTTIAGIFA*
Ga0070765_1006395153	3300006176	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLAGELVAAFFIAMAVMWVVTMIADVFA*
Ga0116220_101017432	3300009525	Peatlands Soil	MATMLTRDRATQVHELIDHTKDSEIPGWEVALDRLIGELVCAFFVAMAVMWVVTAIAGIFG*
Ga0126373_105756262	3300010048	Tropical Forest Soil	MATTLTRHRAGEIHAIRLIDHPKHSEIPGWEVALDRLIGELVCAFFVAMAVMWIVTTIAGIFA*
Ga0074046_100041704	3300010339	Bog Forest Soil	MATMLTRDRATQVHELIDRTKDSEIPGWEVALDRLIGEPVCAFFVAMAVMWVVTAIAGIFG*
Ga0126370_111225092	3300010358	Tropical Forest Soil	MATILTRHHAGEIHAIRLIDHPKHSEIPGWEVALDRLIGELVCAFFVAMAVIWIVTTIAGIFA*
Ga0150983_116073972	3300011120	Forest Soil	MATTLTRERATGFIDHAKGSEIPGWEVALDHLVRELVCAFFIAMAAMWVVTSIAGIVG*
Ga0150983_118986242	3300011120	Forest Soil	LQAVALWRRRATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLTGELVAAFFIAMAVMWVVTTIAGIFA*
Ga0150983_123569641	3300011120	Forest Soil	MATTLTRERATGFIDHAKASEIPGWEVALDRLVRELVCAFFIAMAVMWVVTETAGIFG*
Ga0150983_132629903	3300011120	Forest Soil	EIHSVGLIDHAKDSEIPGWEVALNRLAGELVAAFFIAMAVMWVVTMIADVFA*
Ga0150983_153782841	3300011120	Forest Soil	MATLTPERATGFIDHPKHTEIPGWEVALDHLVRELVCAFFIAMAAMWVVTSIAGIVG*
Ga0137363_101150053	3300012202	Vadose Zone Soil	MATTLTRRATGLIDHAKDSEIPGWEVAVNRLVRELVCAFFIAMAVMWVLTSIAGIFR*
Ga0137360_102287912	3300012361	Vadose Zone Soil	MATTLTRRATGLIDHAKDSEIPGWEVAVSRLVRELVCAFFIAMAVMWVVTSIAGIFR*
Ga0137390_116064971	3300012363	Vadose Zone Soil	MATTLTRERATGFIDHAKDSEIPGWEVAVSRLVRELVCAFFIAMAVMWVVTSIAGIFR*
Ga0182024_107499321	3300014501	Permafrost	MATTFTRERAPAFIDHTKDSEIPGWEVAVDRLVRELLCAFFVAMAVMWVVTSVAGIFG*
Ga0182024_115772812	3300014501	Permafrost	MATTLTRERAPGFIDHAKDSEIPGWEVAIDRLARELVCAFFVAMAVMWVVTSVAGIFG*
Ga0187818_100542222	3300017823	Freshwater Sediment	MATMLTRDRATQVHELIDHTKDSEIPGWEVALDRLIGELVCAFFVAMAVMWVVTAIAGIF
Ga0187810_102622602	3300018012	Freshwater Sediment	MLTRDRATQVHELIDHTKDSEIPGWEVALDRLIGELVCAFFVAMAVMWVVTAIAGIFG
Ga0210407_110935182	3300020579	Soil	MATTFTRERAPGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0210407_113322532	3300020579	Soil	MATTFTRERAPGFIDHAKDSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFG
Ga0210399_106591673	3300020581	Soil	MATTLTRERATGFIDHAKASEIPGWEVALDRLVRELVCAFFIAMAVMWVVTETAGIFG
Ga0210395_113684272	3300020582	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0210401_104315332	3300020583	Soil	MATTPIRQRVTEIGFIDHVKDSEIPDGKLALNRLTGELVAAFFIAMAVMWVVTMIAGIFA
Ga0210401_112485691	3300020583	Soil	MATTFTRERAPGYIDHAKDSEIPGWEVAVDRLARELICAFFVAMAAMWVVTSV
Ga0210401_114829012	3300020583	Soil	MATTFTRERAPSFIDHAKDSEIPGWEVAIDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0210406_108812991	3300021168	Soil	MATTLTRERATGFIDHAKGSEIPGWEVALDRLVRELVCAFFIAMAVMWVVTETAGIFG
Ga0210405_103507012	3300021171	Soil	MATTRIHNRATELDSVRLIDHAKDSEIPGWEVALNRLTRELVCAFFIAMAVMWVVTSIAGIFA
Ga0210405_106367453	3300021171	Soil	MATTLTPGRTTGFIDHAKDSEIPGWEVALDRLVRELVCAFFVAMAVMWVVTAIAGIFG
Ga0210408_105882812	3300021178	Soil	MATTLIRRRATETHSFAGFIDHAKDSEIPGWEVALNRLTRELVSAFFIAMAAMWVVTMVAGIFS
Ga0210396_110988771	3300021180	Soil	MATARIHRRVTEIGFIDHAKDSEIPGWELALSRLTRELVAAFFIAMAAMWVVTTIAGIFS
Ga0210393_100065125	3300021401	Soil	MATTLTPGRTAGFIDHAKDSEIPGWEVAVDRLVRELVCAFFIAMAVMWVVTAIAGIFR
Ga0210393_107150082	3300021401	Soil	MATTFTRERAPGFIDHAKDSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGI
Ga0210397_109546021	3300021403	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAAMWVVTSVAGIFG
Ga0210389_103823592	3300021404	Soil	RERAPGFIDHAKDSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFG
Ga0210387_114261432	3300021405	Soil	MATTFTRERAPGFIDHAKDSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGV
Ga0210387_114584301	3300021405	Soil	MATTLTRKRATGFIDHAKGSEIPGWEFALDRLAGELVCAFFIAMAVMWVVTETAGIFG
Ga0210387_116046991	3300021405	Soil	MATTFTRERAPGFIDHAKDSEIPGWEVAVDRLVRELVCALFVAMAAMWVVTSVAGIFG
Ga0210386_115852352	3300021406	Soil	MATTFTRERAPGFIDHAKGSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFG
Ga0210384_105240452	3300021432	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLTGELVAAFFIAMALMWVVTTIAGIFA
Ga0210392_114632162	3300021475	Soil	MATTLTPGRTAGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0126371_100480232	3300021560	Tropical Forest Soil	MATILTRHHAGEIHAIRLIDHPKHSEIPGWEVALDRLIGELVCAFFVAMAVIWIVTTIAGIFA
Ga0126371_125916841	3300021560	Tropical Forest Soil	MATTLTRHHAGEIHAIRLIDHAKHSEIPGWEVALDRLIGELVCAFFVAMAVMWIVTT
Ga0242644_10315082	3300022498	Soil	MATTFTRERAPGFIDHAKGSEIPGCEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFG
Ga0222729_10602471	3300022507	Soil	MATTFTRERATGFIDHAKGSEIPGWEVALDRLAGELVCAFFIAMAVMWVVTETAGIFG
Ga0222729_10664032	3300022507	Soil	ERAPGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0242649_10606632	3300022509	Soil	MATLTRQRATGFIDHAKGSEIPGWEVAVDRLVRELVCAFFIAMAVMWVVTETAGIFG
Ga0242656_11025271	3300022525	Soil	MATTLTRERATGFIDHAKDSDTPGWEVAVDRLVRELVCAFFIAMAVMWVVTETAGIFG
Ga0242656_11327571	3300022525	Soil	MATIFTRERAPSFIDHAKDSEIPGWEVALNRLTGELVAAFFIAMAVMWVVTTIAGIFA
Ga0242658_12085501	3300022530	Soil	MATTFTRERVSGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0242660_11763391	3300022531	Soil	MATTFTRERVSGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAAMWVVTSVAGVFG
Ga0242660_11855652	3300022531	Soil	AVTSCRSRSEERRPMATTRIHNRATELDSVRLIDHAKDSEIPGWEVALNRLTRELVCAFFIATAVMWVVTSIAGIFA
Ga0242662_103032002	3300022533	Soil	MATTLTRERANGFIDHAKASEIPGWEVALDRLVRELVCAFFIAMAVMWVVTETAGIFG
Ga0242661_11158202	3300022717	Soil	PMATTFTRERAPGFIDHAKDSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFG
Ga0242661_11273832	3300022717	Soil	FTRERVSGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0242675_10913251	3300022718	Soil	EQTRERPMATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLTGELVAAFFIAMAVMWVVTTIAGIFT
Ga0242657_10925381	3300022722	Soil	MVTTLTRKRATRLIDHAKDSQIPGWEVALDRLGRELVSAFFIAMAVMWVVTAIAGIFR
Ga0242665_103736731	3300022724	Soil	EQTRERPMATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLTGELVAAFFIAMAVMWAVTTIAGIFA
Ga0242654_102031692	3300022726	Soil	MATARIHQRVTEIQSVGLIDHAKDSEIPGWELALNRLTGELVAAFFIAMAVMWVVTMVAGIFA
Ga0242654_103533651	3300022726	Soil	MATTFTRERASGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAAMWVVTSVAGIFG
Ga0242654_104079281	3300022726	Soil	PSKRGRRPMATTRIRNRATELDPVRLIDHAKDSEIPGWEVALNRLTRELVCAFFIAMAVMWVVTTIAGVFA
Ga0242654_104087601	3300022726	Soil	TLTRERATGFIDHAKGSEIPGWEVALDRLVRELVCAFFIAMAVMWVVTETAGIFG
Ga0179587_102534382	3300026557	Vadose Zone Soil	MATTLTRRATGLIDHAKDSEIPGWEVAVNRLVRELVCAFFIAMAVMWVLTSIAGIFR
Ga0209579_100461311	3300027869	Surface Soil	MTTTLIRNRTTGIHSVGLIDHARASEIPGWEVALKRLTGELVTAFFIAMAVMWVVTVIAGIFA
Ga0209006_102416993	3300027908	Forest Soil	MATARISRRVTEIQSGGFIDHAKDSEIPGWELALNRLTGELVTAFFIAMAVMWVVTMIAGIFA
Ga0209006_104564021	3300027908	Forest Soil	MATTFIRERTPGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0209006_105616252	3300027908	Forest Soil	MATARIHRRVTEIGFIDHAKDSEIPGWELALSRLTGELVAAFFIAMAVMWVVTTIAGIFS
Ga0308309_101047542	3300028906	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLTGELVAAFFIAMAVMWVVTTIAGIFA
Ga0308309_110741712	3300028906	Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALNRLAGELVAAFFIAMAVMWVVTMIADVFA
Ga0307482_10901721	3300030730	Hardwood Forest Soil	MATTFTRERATGFIDHAKDSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFGRL
Ga0307482_11461583	3300030730	Hardwood Forest Soil	MATTLTRHRTTGLIDHAKETEIPGWEVALDRLGRELVSAFFIAMAAMWVVTAIAGIFR
Ga0138296_11987571	3300030923	Soil	MATTTLTRERATGLIDHAKDSEIPGWEVAVSRLVRELICAFFIAMAVMWVVTSIAGIFG
Ga0138296_14281011	3300030923	Soil	MATTLTRERAPGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAAMWVVTSVAGIFG
Ga0138296_15742782	3300030923	Soil	MATTLTRERATGFIDHAKGSEIPGWEVALDRLAGELVCAFFIAMAVMWVVTETAGIFG
Ga0138296_18233941	3300030923	Soil	TTLTRERATGLIDHAKDSEIPGWEVAVGRLVRELVCAFFIAMAVMWVVTSIAGIFR
Ga0138302_11803281	3300030937	Soil	MATTLTRERATGLIDHAKGSEIPGWEVALDRLAGELVCAFFIAMAVMWVVTETAGIFG
Ga0138302_12480701	3300030937	Soil	MATTLTRERATGLIDHAKDSEIPGWEVAVGRLVRELVCAFFIAMAVMWVVTSIAGIFR
Ga0138302_17126213	3300030937	Soil	MATTLTRQRATGLIDHAKDTQIPGWEVALDRLGRELVSAFFIAMAAMWVVTAIAGIFR
Ga0138302_17527023	3300030937	Soil	MATLTPERTTGFIDHPKHTEIPGWEVALDHLVRELVCAFFIAMAAMWVVTSIAGIVG
Ga0138297_13708733	3300030962	Soil	MATTLTRERATGLIDHAKDSEIPGWEVAVSRLVRELICAFFIAMAVMWVVTSIAGIFR
Ga0073996_124221212	3300030998	Soil	MGTRLTRNRTTEVRSVGFIDHVKGSERPEREVALERLAGELVSAFFVAMAVMWVVTTIAGIFS
Ga0170823_114723202	3300031128	Forest Soil	MATTFTRARATGFIDHAKGPEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFG
Ga0170823_133230882	3300031128	Forest Soil	MATTLTRQRATGLIDHAKDTQIPGWEIALDRLGRELVSAFFIAMAAMWVVTAIAGIFR
Ga0170824_1063062012	3300031231	Forest Soil	MVTTLTRHREADIHSARLIDHAKDSEIPGWEVALDRLARELVCAFFVAMAVMWVVTAIAGIYG
Ga0170820_149527982	3300031446	Forest Soil	MVTTLTRHREADIHSARLIDHAKDSEIPGWEVALDRLARELVCAFFVAMAVMWVVTA
Ga0170818_1132390811	3300031474	Forest Soil	MVTTLTRHREADIHSARLIDHAKDSEIPGWEVALDRLARELVCAFFVAMAVMWVVTAIAG
Ga0310686_1125563992	3300031708	Soil	MATTLTPGRTTGFIDHAKDSEIPGWEVALDRLARELVCAFFLAMAVMWVVTAIAGIFG
Ga0310686_1139518821	3300031708	Soil	MATTFTRERAPGFIDHAKDSEIPGWEAAVDRLARELVCAFFVAMAVMWVVTSVAGIFG
Ga0310686_1160031463	3300031708	Soil	MATTLIRNRTTEIHSVGLIDHAKDSETPGWEVALNRLTSELVAAFFIAMAVMWVVTTIAGIFA
Ga0307476_102710691	3300031715	Hardwood Forest Soil	MATTLIRNRTTEIHSVGLIDHAKDSEIPGWEVALSRLSGELVAAFFIAMAVMWVVTTIAGIFA
Ga0307474_111292131	3300031718	Hardwood Forest Soil	MATTFTRERAPGFIDHAKDSEIPGWEVAIDRLARELVCAFFVAMAAMWVVTSVAGIFG
Ga0307478_101489412	3300031823	Hardwood Forest Soil	MATTLTRARTTGLIDHAKDREIPGWEVALDRLGRELVSAFFIAMAAMWVVTTIAGIFR
Ga0307478_101992093	3300031823	Hardwood Forest Soil	MATTYTRERATGFIDHAKGSEIPGWEVAVDRLVRELVCAFFVAMAAMWVVTSVAGIFG
Ga0307478_107467351	3300031823	Hardwood Forest Soil	ATGLIDHAKDSQIPGWEVALDRLGRELVSAFFIAMAAMWVVTAIAGIFR
Ga0307478_110380622	3300031823	Hardwood Forest Soil	MATTFSRERAPGFIDHAKDSEIPGWEVAVDRLARELVCAFFVAMAAMWVVTSVAGIFG
Ga0307478_111336952	3300031823	Hardwood Forest Soil	MATTPIRNRTTEIHFVGLIDHAKDSEIPGWEVALNRLTGELFAAFFIAMAVMWVVATIAGIFA
Ga0307478_117773582	3300031823	Hardwood Forest Soil	MATTFTRERAPGFIDHAKGSEIPGWEVAVDRLVRELVCAFFVAMAAMWV
Ga0307479_117980342	3300031962	Hardwood Forest Soil	MATTLTRARTTGLIDHAKDTEIPGWEVALDRLGRELVSAFFIAMAAMWAVTTIAGIFR
Ga0307471_1037902971	3300032180	Hardwood Forest Soil	MATTLTRERATGFIDHAKGSEIPGWEVALDHLVRELVCAFFIAMAVMWVVTETAGIFG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092416

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences