Metagenome Family F092411

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092411
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	52 residues
Representative Sequence	MAITAVAPARSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETALGA
Number of Associated Samples	78
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.02 %
% of genes near scaffold ends (potentially truncated)	19.63 %
% of genes from short scaffolds (< 2000 bps)	80.37 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.140 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (26.168 % of family members)
Environment Ontology (ENVO)	Unclassified (51.402 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (75.701 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.25% β-sheet: 20.00% Coil/Unstructured: 68.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00135	COesterase	8.41
PF00753	Lactamase_B	8.41
PF07859	Abhydrolase_3	7.48
PF12695	Abhydrolase_5	5.61
PF10116	Host_attach	2.80
PF07731	Cu-oxidase_2	0.93
PF02771	Acyl-CoA_dh_N	0.93
PF04095	NAPRTase	0.93
PF00313	CSD	0.93
PF13505	OMP_b-brl	0.93
PF04392	ABC_sub_bind	0.93
PF13231	PMT_2	0.93
PF13308	YARHG	0.93
PF10592	AIPR	0.93
PF03069	FmdA_AmdA	0.93
PF10387	DUF2442	0.93
PF00905	Transpeptidase	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG2272	Carboxylesterase type B	Lipid transport and metabolism [I]	8.41
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	7.48
COG1488	Nicotinic acid phosphoribosyltransferase	Coenzyme transport and metabolism [H]	0.93
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.93
COG2132	Multicopper oxidase with three cupredoxin domains (includes cell division protein FtsP and spore coat protein CotA)	Cell cycle control, cell division, chromosome partitioning [D]	0.93
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.01 %
Unclassified	root	N/A	42.99 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.01 %
Unclassified	root	N/A	42.99 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.14 %
Unclassified	root	N/A	42.99 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	1.87 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	44.86 %
Unclassified	root	N/A	42.99 %
Opisthokonta	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.23 %
Metazoa	kingdom	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa	1.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.08 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	6.54 %
Eumetazoa	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa	1.87 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	6.54 %
Bilateria	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria	1.87 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas	6.54 %
Deuterostomia	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Chordata	phylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Craniata	subphylum	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Vertebrata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Gnathostomata	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Chondrichthyes	class	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Elasmobranchii	subclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Selachii	infraclass	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Galeomorphii	clade	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Galeoidea	superorder	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Orectolobiformes	order	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Hemiscylliidae	family	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Chiloscyllium	genus	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.99 %
Roseomonas oryzicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	6.54 %
Chiloscyllium punctatum	species	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1.87 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002245\|JGIcombinedJ26739_100995230	All Organisms → cellular organisms → Bacteria → Proteobacteria	723	Open in IMG/M
3300002906\|JGI25614J43888_10081064	Not Available	899	Open in IMG/M
3300002907\|JGI25613J43889_10037793	Not Available	1369	Open in IMG/M
3300002914\|JGI25617J43924_10086144	All Organisms → cellular organisms → Bacteria → Proteobacteria	1135	Open in IMG/M
3300002917\|JGI25616J43925_10009774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4185	Open in IMG/M
3300004268\|Ga0066398_10006449	All Organisms → cellular organisms → Bacteria	1535	Open in IMG/M
3300004281\|Ga0066397_10147232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	535	Open in IMG/M
3300004633\|Ga0066395_10000051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	38941	Open in IMG/M
3300004633\|Ga0066395_10088557	All Organisms → cellular organisms → Bacteria → Proteobacteria	1466	Open in IMG/M
3300005332\|Ga0066388_100120126	All Organisms → cellular organisms → Bacteria → Proteobacteria	3148	Open in IMG/M
3300005332\|Ga0066388_100500317	All Organisms → cellular organisms → Bacteria	1851	Open in IMG/M
3300005332\|Ga0066388_100944944	All Organisms → cellular organisms → Bacteria → Proteobacteria	1434	Open in IMG/M
3300005332\|Ga0066388_103724487	All Organisms → cellular organisms → Bacteria → Proteobacteria	778	Open in IMG/M
3300005332\|Ga0066388_105064669	Not Available	669	Open in IMG/M
3300005332\|Ga0066388_107273329	Not Available	556	Open in IMG/M
3300005531\|Ga0070738_10002868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	24619	Open in IMG/M
3300005532\|Ga0070739_10098701	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300005764\|Ga0066903_100008770	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9396	Open in IMG/M
3300005764\|Ga0066903_100063975	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4630	Open in IMG/M
3300005764\|Ga0066903_102476910	Not Available	1004	Open in IMG/M
3300005764\|Ga0066903_105713243	Not Available	654	Open in IMG/M
3300006047\|Ga0075024_100405257	Not Available	695	Open in IMG/M
3300006176\|Ga0070765_100829307	Not Available	874	Open in IMG/M
3300006176\|Ga0070765_101660171	Not Available	600	Open in IMG/M
3300006354\|Ga0075021_10093651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1779	Open in IMG/M
3300007258\|Ga0099793_10128397	All Organisms → cellular organisms → Bacteria → Proteobacteria	1190	Open in IMG/M
3300009088\|Ga0099830_10302280	Not Available	1277	Open in IMG/M
3300009089\|Ga0099828_11502722	Not Available	594	Open in IMG/M
3300009143\|Ga0099792_10103790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1498	Open in IMG/M
3300009143\|Ga0099792_10938273	Not Available	575	Open in IMG/M
3300009521\|Ga0116222_1232391	All Organisms → cellular organisms → Bacteria → Proteobacteria	795	Open in IMG/M
3300009792\|Ga0126374_10050238	All Organisms → cellular organisms → Bacteria → Proteobacteria	2110	Open in IMG/M
3300009792\|Ga0126374_10311594	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	1061	Open in IMG/M
3300009792\|Ga0126374_11160018	Not Available	616	Open in IMG/M
3300010043\|Ga0126380_10061770	All Organisms → cellular organisms → Bacteria → Proteobacteria	2081	Open in IMG/M
3300010043\|Ga0126380_10220176	Not Available	1288	Open in IMG/M
3300010043\|Ga0126380_10266804	Not Available	1196	Open in IMG/M
3300010043\|Ga0126380_10760429	Not Available	787	Open in IMG/M
3300010043\|Ga0126380_11423679	Not Available	610	Open in IMG/M
3300010046\|Ga0126384_11304780	Not Available	673	Open in IMG/M
3300010046\|Ga0126384_12195626	Not Available	531	Open in IMG/M
3300010358\|Ga0126370_11163398	Not Available	715	Open in IMG/M
3300010358\|Ga0126370_11557672	Not Available	631	Open in IMG/M
3300010358\|Ga0126370_12253241	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010360\|Ga0126372_10378592	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1282	Open in IMG/M
3300010360\|Ga0126372_10800869	Not Available	933	Open in IMG/M
3300010361\|Ga0126378_11507994	All Organisms → cellular organisms → Bacteria → Proteobacteria	762	Open in IMG/M
3300010361\|Ga0126378_12014929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	658	Open in IMG/M
3300010361\|Ga0126378_12778560	Not Available	559	Open in IMG/M
3300010362\|Ga0126377_11930480	Not Available	666	Open in IMG/M
3300010366\|Ga0126379_13678666	Not Available	514	Open in IMG/M
3300010376\|Ga0126381_104855554	Not Available	517	Open in IMG/M
3300010398\|Ga0126383_12080105	Not Available	655	Open in IMG/M
3300010398\|Ga0126383_13215864	Not Available	533	Open in IMG/M
3300011120\|Ga0150983_10135135	Not Available	868	Open in IMG/M
3300011270\|Ga0137391_10208425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	1699	Open in IMG/M
3300011271\|Ga0137393_10150135	All Organisms → cellular organisms → Bacteria	1945	Open in IMG/M
3300011271\|Ga0137393_10211636	All Organisms → cellular organisms → Bacteria	1638	Open in IMG/M
3300012096\|Ga0137389_11115661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	676	Open in IMG/M
3300012205\|Ga0137362_11305803	Not Available	611	Open in IMG/M
3300012362\|Ga0137361_11193878	Not Available	683	Open in IMG/M
3300012683\|Ga0137398_11236165	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300012685\|Ga0137397_10293384	Not Available	1212	Open in IMG/M
3300012925\|Ga0137419_11699924	Not Available	538	Open in IMG/M
3300012927\|Ga0137416_11782619	Not Available	562	Open in IMG/M
3300012948\|Ga0126375_10771216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	758	Open in IMG/M
3300012948\|Ga0126375_11663045	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300012971\|Ga0126369_11731578	Not Available	714	Open in IMG/M
3300012971\|Ga0126369_12469752	Not Available	605	Open in IMG/M
3300014200\|Ga0181526_10856856	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300015241\|Ga0137418_10123248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2309	Open in IMG/M
3300016270\|Ga0182036_10615619	Not Available	872	Open in IMG/M
3300016341\|Ga0182035_12123066	Not Available	510	Open in IMG/M
3300017926\|Ga0187807_1295805	Not Available	537	Open in IMG/M
3300017955\|Ga0187817_11083925	Not Available	514	Open in IMG/M
3300017970\|Ga0187783_10003664	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	11320	Open in IMG/M
3300018007\|Ga0187805_10265561	Not Available	787	Open in IMG/M
3300020199\|Ga0179592_10282633	All Organisms → cellular organisms → Bacteria → Proteobacteria	740	Open in IMG/M
3300021170\|Ga0210400_10305565	Not Available	1306	Open in IMG/M
3300021178\|Ga0210408_10094485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2348	Open in IMG/M
3300021180\|Ga0210396_11237468	All Organisms → cellular organisms → Bacteria → Proteobacteria	623	Open in IMG/M
3300021432\|Ga0210384_10347977	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Roseomonas → Roseomonas oryzicola	1335	Open in IMG/M
3300021476\|Ga0187846_10100176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1247	Open in IMG/M
3300021478\|Ga0210402_10006508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10347	Open in IMG/M
3300021478\|Ga0210402_12031614	Not Available	501	Open in IMG/M
3300021560\|Ga0126371_10115076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2703	Open in IMG/M
3300026319\|Ga0209647_1039205	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2675	Open in IMG/M
3300026320\|Ga0209131_1003689	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10136	Open in IMG/M
3300026355\|Ga0257149_1073558	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300026356\|Ga0257150_1000644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4566	Open in IMG/M
3300026359\|Ga0257163_1073934	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300026496\|Ga0257157_1024284	All Organisms → cellular organisms → Bacteria → Proteobacteria	991	Open in IMG/M
3300026551\|Ga0209648_10080400	All Organisms → cellular organisms → Bacteria	2722	Open in IMG/M
3300026551\|Ga0209648_10725765	Not Available	542	Open in IMG/M
3300027605\|Ga0209329_1065404	Not Available	783	Open in IMG/M
3300027654\|Ga0209799_1024307	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300027826\|Ga0209060_10001565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	24499	Open in IMG/M
3300027874\|Ga0209465_10001863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9304	Open in IMG/M
3300027903\|Ga0209488_10127687	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1916	Open in IMG/M
3300028047\|Ga0209526_10019369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4738	Open in IMG/M
3300030659\|Ga0316363_10326604	All Organisms → cellular organisms → Bacteria → Proteobacteria	609	Open in IMG/M
3300031719\|Ga0306917_10543391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	913	Open in IMG/M
3300031720\|Ga0307469_10735193	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300031912\|Ga0306921_11622698	All Organisms → cellular organisms → Bacteria → Proteobacteria	702	Open in IMG/M
3300032001\|Ga0306922_10685413	All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Chondrichthyes → Elasmobranchii → Selachii → Galeomorphii → Galeoidea → Orectolobiformes → Hemiscylliidae → Chiloscyllium → Chiloscyllium punctatum	1080	Open in IMG/M
3300032261\|Ga0306920_103536297	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.39%
Aquatic	Environmental → Aquatic	5.61%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	93.46%
Freshwater	Environmental → Aquatic → Freshwater	3.74%
Sediment	Environmental → Aquatic → Sediment	1.87%
Cave	Environmental → Terrestrial → Cave	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.96%
Loam	Environmental → Terrestrial → Soil → Loam	20.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.87%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	48.60%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.56%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	15.89%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.48%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.80%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	26.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	14.95%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.35%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.74%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.80%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.80%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	2.80%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.87%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002907	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm	Environmental	Open in IMG/M
3300002914	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004281	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005532	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026355	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-A	Environmental	Open in IMG/M
3300026356	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-A	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026496	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-69-A	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027826	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ26739_1009952302	3300002245	Forest Soil	MVIMAVTPARFAGSVDSNDLEDITHGCVQCGTTLTRTVRPLTGEEHETALRL*
JGI25614J43888_100810641	3300002906	Grasslands Soil	PHCGHRMVIMAVTPARFAGSIDSNDLEDITHGCVQCGTTLTRTVRPLASEEHETALRV*
JGI25613J43889_100377932	3300002907	Grasslands Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRSLAEGDRETALRA*
JGI25617J43924_100861442	3300002914	Grasslands Soil	MTITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETARA*
JGI25616J43925_100097747	3300002917	Grasslands Soil	MAITAVAPAQSNGXAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETARA*
Ga0066398_100064491	3300004268	Tropical Forest Soil	HCGHRMAITAVAPARPSDSAESSNLEDITHSCMQCGTTLTRTVRAIAKDDQKAALPA*
Ga0066397_101472321	3300004281	Tropical Forest Soil	MAITAIAPARPSDSAESSNLEDITHGCTQCGTTLTRTVRAVAKDDQKTALSA*
Ga0066395_100000519	3300004633	Tropical Forest Soil	MAITSVTPAQFSGSVESHDLEDITHGCVQCGTTLTRTVRLRSDDEQEAALRA*
Ga0066395_100885572	3300004633	Tropical Forest Soil	MAITAVAPARPSDSAESSNLEDITHSCMQCGTTLTRTVRAIAKDDQKAALPA*
Ga0066388_1001201262	3300005332	Tropical Forest Soil	MAITAVTPARFVGVEANDLEDITHGCVQCGTTLTRTVRPLSGEAQETAVRA*
Ga0066388_1005003172	3300005332	Tropical Forest Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETGLRV*
Ga0066388_1009449442	3300005332	Tropical Forest Soil	MAITAVTPARSGGSAETSNLEDITHGCVQCGTTLTRTVRPLAVAEDDRETAA*
Ga0066388_1037244872	3300005332	Tropical Forest Soil	MAIMAVAPAPSSDNAESTNLEDITHGCVQCGTTLTRTVRPRDDDERETAVRA*
Ga0066388_1050646691	3300005332	Tropical Forest Soil	MAITAVAPVRPSDSAESSNLEDITHGCVQCGTTLTRTVRPRDEDDRESAIR
Ga0066388_1072733292	3300005332	Tropical Forest Soil	MAVTAVAPARLAGSVESNDLEDITHGCVQCGATLTRTVRPLTGDKEETIPPGSTSA*
Ga0070738_100028682	3300005531	Surface Soil	MTITAIAPTQSNGSAESSNLEDITHGCVKCGTTLTRTVRPARRP*
Ga0070739_100987012	3300005532	Surface Soil	HRMTITAIAPTQSNGSAESSNLEDITHGCVKCGTTLTRTVRPARRP*
Ga0066903_1000087708	3300005764	Tropical Forest Soil	MAVMAVTPARFAGSVGSNDLEDITHGCVQCGTTLTRTVRPHSGSEEEITLRA*
Ga0066903_1000639753	3300005764	Tropical Forest Soil	MAITAVTPARFAGSVGSNDLEDITHSCVQCGTTLTRTVRPHSGDEQETTLRA*
Ga0066903_1024769102	3300005764	Tropical Forest Soil	MAITAVAPVRPSDSTESSNLEDITHGCTQCGTTLTRTVRAIAKDDQKTALSA*
Ga0066903_1057132432	3300005764	Tropical Forest Soil	MAVTAVTPARSGGGAESSNLKDITHGCMQCGTTLTRTVRRRDGDDRETAIGA*
Ga0075024_1004052572	3300006047	Watersheds	MAITAVTPARFAGGVESNDLEDITHGCVQCGTSLTRTVRPFTGDEHETLLRV*
Ga0070765_1008293072	3300006176	Soil	HRMAITAVSPARFDNGVESNDLEDITHGCVQCGTTLTRTVRPLSADAREVAARV*
Ga0070765_1016601711	3300006176	Soil	MVIMAVTPARFAGSVDSNDLEDITHGCVQCGTTLTRTVRPLASEEHETALRV*
Ga0075021_100936513	3300006354	Watersheds	VIIIRCPHCGHRMIITAVAPARFASGVESNHLEDITHGCVQCGTTLVRTVRPFAGDDPELALRA*
Ga0099793_101283972	3300007258	Vadose Zone Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQPAEGDRKTALRA*
Ga0099830_103022801	3300009088	Vadose Zone Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQRAEDDRETALRAQPA*
Ga0099828_115027222	3300009089	Vadose Zone Soil	MAITAVTRARSGGSASSSNLEDITHGCVQCGTTLTRTVRPLAEDDQATAIQA*
Ga0099792_101037902	3300009143	Vadose Zone Soil	MAITAVTPARSSGSAESSNLEDITHGCVQCGTTLTRTVRPRAEDDRKQHFGLE*
Ga0099792_109382731	3300009143	Vadose Zone Soil	MAITAITPARSSGSAESSNLEDITHGCVQCGTTLTRTVRPLAEDDQETAIQA*
Ga0116222_12323911	3300009521	Peatlands Soil	MAITAVSPARFDNGVESNDLEDITHGCVQCGTTLTRTVRPLGADEVAARA*
Ga0126374_100502382	3300009792	Tropical Forest Soil	MAITSVAPAQFTGSVESHDLEDITHGCVRCGTTLTRTVRLRSDDEQEAALRV*
Ga0126374_103115942	3300009792	Tropical Forest Soil	MAITAVAPARPSDSTESSNLEDITHGCTQCGTTLTRTVRAIAKDDQNTALSA*
Ga0126374_111600181	3300009792	Tropical Forest Soil	MAITAVTPVRFVGIETDDLEDITHGCVQCGTTLTRTVRPLTEDDQATAIRVSA*
Ga0116219_106989701	3300009824	Peatlands Soil	MAITAVAPARVDTGVESNDLEDVTHGCVQCGTTLTRTVRPRAGDAHEIAPRL*
Ga0126380_100617702	3300010043	Tropical Forest Soil	MAITAVAPAQFSSAESNHLEDITHSCVQCGTTLTRTVRPLAEDEQEIETRV*
Ga0126380_102201762	3300010043	Tropical Forest Soil	MVIIAVTPARFADVDSNDLEDITHGCVQCGTTLTRTVRPLADNEQETALRL*
Ga0126380_102668042	3300010043	Tropical Forest Soil	MTITAITPAGSNGAAESGNLEDITHGCAQCGTTLTRTVRTLAKSDR
Ga0126380_107604292	3300010043	Tropical Forest Soil	MAITAVTPVRFVGVETNDLEDITHGCVQCGTTLTRTVRPLTEDDQATAVRVSA*
Ga0126380_114236791	3300010043	Tropical Forest Soil	MAITAVTPARFAGSVGSNDLEDITHGCVQCGTTLTRTVRPHSGDEQETTLRA*
Ga0126384_113047802	3300010046	Tropical Forest Soil	MAITAVTPARFVGVEANDLEDITHGCVQCGTTLTRTVRLLSEEAQETAVRA*
Ga0126384_121956261	3300010046	Tropical Forest Soil	MTITAVTPAGSDGGAESGNLEDITHGCVQCGTTLTRTVRPRAEDDRKTAVRA*
Ga0126370_111633981	3300010358	Tropical Forest Soil	MVIIAVTPARFADVDSNDLEDITHGCVQCGTTLTRTVRPLVDDEQETALRL*
Ga0126370_115576722	3300010358	Tropical Forest Soil	MAITAVTAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETGLRV*
Ga0126370_122532411	3300010358	Tropical Forest Soil	MAITAVAPARFAGSVGSNDLEDITHGCVQCGTTLTRTVRPHSGDEQETTLRA*
Ga0126372_103785922	3300010360	Tropical Forest Soil	MAITSVAPAQFTGSVESHDLEDITHGCVQCGTTLTRTVRLRSDDEQEAALRA*
Ga0126372_108008691	3300010360	Tropical Forest Soil	MAITAVAPVRPSDSTESSNLEDITHGCTQCGTTLTRTVR
Ga0126378_115079942	3300010361	Tropical Forest Soil	MAVMAVTPARFAGSVGSNDLEDITHGCVQCGTTLTRTVRPHSGSEQEITLRA*
Ga0126378_120149291	3300010361	Tropical Forest Soil	MAITAVAPVRPSDSTESSNLEDITHGCTQCGTTLRRTVRAIAKDDQKTALSA*
Ga0126378_127785601	3300010361	Tropical Forest Soil	MAITSVAPAQFTGSVESHDLEDITHGCVRCGTTLTRTVRLRSDDEQEAALRA*
Ga0126377_119304802	3300010362	Tropical Forest Soil	MAITAVAPARFAGSVGSNDLEDITHGCVQCGTTLTRTVRPHSGDEQ
Ga0126379_136786662	3300010366	Tropical Forest Soil	MAITAVAPAQSNGGAESSNLEDITHGCMQCGTTLTRTVRSLAKDDQKTALPV*
Ga0126381_1048555541	3300010376	Tropical Forest Soil	MTITAITPARSNGGAESCNLEDITHGCAQCGTTLTRTVRSRAETDREAAIRA*
Ga0126383_120801051	3300010398	Tropical Forest Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAE
Ga0126383_132158642	3300010398	Tropical Forest Soil	MAITAVAPARFAGSVGANDLEDITHGCVQCGTTLTRTVRPHSGDEQ
Ga0150983_101351351	3300011120	Forest Soil	MVMTGVMPARFDNGVESNDLEDVTHGCVQCGTTLTRTVRPLSADAREVAARV*
Ga0137391_102084253	3300011270	Vadose Zone Soil	MAITAVTPARSSGSAASSNLEDITHGCVQCGTTLTRTVRPQAEDDQETAIRA*
Ga0137393_101501351	3300011271	Vadose Zone Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQPAEGDRKTALPA*
Ga0137393_102116361	3300011271	Vadose Zone Soil	MAITAITPARSSESAESAHLEDITHGCVQCGTTLTRTVRQLAEGDRETALRA*
Ga0137389_111156611	3300012096	Vadose Zone Soil	MAITAVTRARSGGSASSSNLEDITHGCVQCGTTLTRTVRPLAEDDQETAIQA*
Ga0137362_113058031	3300012205	Vadose Zone Soil	MAITAVAPAQSNGGAELSNLEDITHGCVQCGTTLTRTVRQPAEGDRKTAHRA*
Ga0137361_111938782	3300012362	Vadose Zone Soil	MAITAVAPARSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETALGA*
Ga0137398_112361651	3300012683	Vadose Zone Soil	MAITAITPARSSESAESAHLEDITHGCVQCGTTLTRTVRQLAEGDREIALRA*
Ga0137397_102933842	3300012685	Vadose Zone Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTV
Ga0137419_116999241	3300012925	Vadose Zone Soil	MAITAVAPAHSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEGDRETALRA*
Ga0137416_117826191	3300012927	Vadose Zone Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQRGEDDREAALRV*
Ga0126375_107712161	3300012948	Tropical Forest Soil	MAITAVAPARFADGVGSNDLEDITHGCVQCGTTLTRTVRPHSSDEQETTLRA*
Ga0126375_116630452	3300012948	Tropical Forest Soil	MAITAVTPARSSGSAESTNLDITHGCVQCGTTLTRTVRLRAEDDRETALRA*
Ga0126369_117315781	3300012971	Tropical Forest Soil	MVIIAVTPARFADVDSNDLEDITHGCVQCGTTLTRTVRPLADDEQETALRL*
Ga0126369_124697522	3300012971	Tropical Forest Soil	MAITAVTPVRFVGVETDDLEDITHGCVQCGTTLTRTVRPLTEDDQATAVRVSA*
Ga0181526_108568561	3300014200	Bog	MAITAVAPARFAGGIESNDLEDVTHGCVQCGTTLTRTIRPFHGEEHAVARRA*
Ga0137418_101232483	3300015241	Vadose Zone Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQPA
Ga0182036_106156192	3300016270	Soil	MAITAVAPARFAGSVGSNDLVDITHGCVQCGTTLTRTVRPHNAEEQETTLRA
Ga0182035_121230661	3300016341	Soil	MAITAVTPVQSSGSTESSDLEDITHGCVQCGTTLTRTVRSLAEGDQ
Ga0187807_12958051	3300017926	Freshwater Sediment	MTITAIAPARSNGDEEVSDLEDITHGCVQCGTTLTRTVRTPADGDRAPALQA
Ga0187817_110839251	3300017955	Freshwater Sediment	MTITAIAPARSNGDEEVSDLEDITHGCVQCGTTLTRTVRPLTGEAHEIAQRF
Ga0187783_100036641	3300017970	Tropical Peatland	MAITAVTPVRSNGSVESSHLEDITHGCVQCGTTLTRTVRSPTKGDQETAIRV
Ga0187805_102655611	3300018007	Freshwater Sediment	MTITAIAPARSNGDEEVSDLEDITHGCVQCGTTLTRTVRLLTDGDRESALRA
Ga0179592_102826332	3300020199	Vadose Zone Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQPAEGDRKTALRA
Ga0210400_103055652	3300021170	Soil	MAITAVTPARFNGSAESGILEDITHGCVQCGTTLTRTVRPLAGDDQKTALRA
Ga0210408_100944852	3300021178	Soil	MVIMAVTPARFAGSVDSNDLEDITHGCVQCGTTLTRTVRPLASEEHETALRV
Ga0210396_112374681	3300021180	Soil	PHCGHRMAITAVCPARFDNGVESNDLEDVTHGCVQCGTTLTRTVRPLSADAREVAARV
Ga0210384_103479772	3300021432	Soil	MVIMAVTPARFAGSVDSNDLEDITHGCVQCGTTLTRTVRPLTGEEHETALRV
Ga0187846_101001762	3300021476	Biofilm	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETARA
Ga0210402_100065081	3300021478	Soil	MAITAVTPAWFNGDAESGNLEDITHGCVQCGTTLTRTVRPLAEDEQKTALPA
Ga0210402_120316141	3300021478	Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLADGDRETALP
Ga0126371_101150764	3300021560	Tropical Forest Soil	MAITAVAPVRPSDSTESSNLEDITHGCTQCGTTLTRTVRAIAKDDQKTALSA
Ga0209647_10392052	3300026319	Grasslands Soil	MVIMAVTPARFAGSIDSNDLEDITHGCVQCGTTLTRTVRPLASEEHETALRV
Ga0209131_10036896	3300026320	Grasslands Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRSLAEGDRETALRA
Ga0257149_10735582	3300026355	Soil	AITPARSSESAESAHLEDITHGCVQCGTTLTRTVRQLAEGDREIALRA
Ga0257150_10006446	3300026356	Soil	MAITAITPARSSESAESAHLEDITHGCVQCGTTLTRTVRQLAEGDREIALRA
Ga0257163_10739341	3300026359	Soil	MAITAITPARSSESAESAHLEDITHGCVQCGTTLTRTVRQLAEVDRETALRA
Ga0257157_10242842	3300026496	Soil	MAITAITPARSSESAESAHLEDITHGCVQCGTTLTRTVRQLAEVDREIALRA
Ga0209648_100804002	3300026551	Grasslands Soil	MTITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAEDDRETARA
Ga0209648_107257651	3300026551	Grasslands Soil	MAITAVAPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRQLAED
Ga0209329_10654041	3300027605	Forest Soil	LLPCPHCGHRMVIMAVTPARFAGSVDSNDLEDITHGCVQCGTTLTRTVRPLASEEHETALRV
Ga0209799_10243071	3300027654	Tropical Forest Soil	HCGHRMAITAVAPARPSDSAESSNLEDITHSCMQCGTTLTRTVRAIAKDDQKAALPA
Ga0209060_100015652	3300027826	Surface Soil	MTITAIAPTQSNGSAESSNLEDITHGCVKCGTTLTRTVRPARRP
Ga0209465_100018638	3300027874	Tropical Forest Soil	MAITAVAPARPSDSAESSNLEDITHSCMQCGTTLTRTVRAIAKDDQKAALPA
Ga0209488_101276872	3300027903	Vadose Zone Soil	MAITAVTPARSSGSAESSNLEDITHGCVQCGTTLTRTVRPRAEDDRKQHFGLE
Ga0209526_100193693	3300028047	Forest Soil	MVIMAVTPARFAGSVDSNDLEDITHGCVQCGTTLTRTVRPLTGEEHETALRL
Ga0316363_103266041	3300030659	Peatlands Soil	CGHRMAITAVSPARFDNGVESNDLEDITHGCVQCGTTLTRTVRPLGADEVAARA
Ga0306917_105433912	3300031719	Soil	MAITAVAPARFAGSVGSNDLEDITHGCVQCGTTLTRTVRPHNAEEQETTLRA
Ga0307469_107351931	3300031720	Hardwood Forest Soil	MAITAVTPARFVGVEANDLEDITHGCVQCGTTLTRTVRPLSGEAQETAVRA
Ga0306921_116226981	3300031912	Soil	MTITAVTRARFAGGVESNDLEDITHGCVQCGTTLTRTVRPRTGDERETALRLISSP
Ga0306922_106854132	3300032001	Soil	MAITAVAPARFAGSVGSNDLEDITHGCVQCGTTLTRTVRPHNVEEQETTLRA
Ga0306920_1035362972	3300032261	Soil	MAITAVTPAQSNGGAESSNLEDITHGCVQCGTTLTRTVRTRAKGDRERETALRA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092411

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences