NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F092351

Metagenome Family F092351

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F092351
Family Type Metagenome
Number of Sequences 107
Average Sequence Length 41 residues
Representative Sequence MKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKINDK
Number of Associated Samples 76
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 0.93 %
% of genes near scaffold ends (potentially truncated) 16.82 %
% of genes from short scaffolds (< 2000 bps) 69.16 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction Yes
3D model pTM-score0.43

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (93.458 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(26.168 % of family members)
Environment Ontology (ENVO) Unclassified
(72.897 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(80.374 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 51.47%    β-sheet: 0.00%    Coil/Unstructured: 48.53%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.43
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13920zf-C3HC4_3 5.61
PF04851ResIII 4.67
PF00313CSD 2.80
PF01192RNA_pol_Rpb6 0.93
PF13639zf-RING_2 0.93
PF01363FYVE 0.93
PF00090TSP_1 0.93
PF10755DUF2585 0.93
PF00382TFIIB 0.93
PF00268Ribonuc_red_sm 0.93
PF13518HTH_28 0.93
PF00132Hexapep 0.93
PF00013KH_1 0.93
PF13584BatD 0.93
PF03031NIF 0.93
PF13419HAD_2 0.93
PF00397WW 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG0208Ribonucleotide reductase beta subunit, ferritin-like domainNucleotide transport and metabolism [F] 0.93
COG1758DNA-directed RNA polymerase, subunit K/omegaTranscription [K] 0.93
COG5190TFIIF-interacting CTD phosphatase, includes NLI-interacting factorTranscription [K] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A93.46 %
All OrganismsrootAll Organisms6.54 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2189573027|GS312G0146KB_1118463111697Not Available931Open in IMG/M
3300000947|BBAY92_10011246All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → Porticoccus → unclassified Porticoccus → Porticoccus sp.2390Open in IMG/M
3300001966|GOS2245_1086569Not Available1134Open in IMG/M
3300001972|GOS2216_10098106Not Available1561Open in IMG/M
3300005239|Ga0073579_1288371Not Available798Open in IMG/M
3300005430|Ga0066849_10081871Not Available1288Open in IMG/M
3300005731|Ga0076919_1035902Not Available12732Open in IMG/M
3300005837|Ga0078893_10388431Not Available9270Open in IMG/M
3300006025|Ga0075474_10083583Not Available1045Open in IMG/M
3300006026|Ga0075478_10189530Not Available631Open in IMG/M
3300006193|Ga0075445_10005107Not Available6173Open in IMG/M
3300006193|Ga0075445_10106454Not Available1040Open in IMG/M
3300006193|Ga0075445_10192455Not Available716Open in IMG/M
3300006308|Ga0068470_1130172Not Available610Open in IMG/M
3300006310|Ga0068471_1571718Not Available1317Open in IMG/M
3300006332|Ga0068500_1343105Not Available697Open in IMG/M
3300006947|Ga0075444_10281995Not Available645Open in IMG/M
3300007234|Ga0075460_10133624Not Available873Open in IMG/M
3300007291|Ga0066367_1319498Not Available612Open in IMG/M
3300009173|Ga0114996_10193760Not Available1644Open in IMG/M
3300009173|Ga0114996_10356264Not Available1131Open in IMG/M
3300009376|Ga0118722_1316206Not Available852Open in IMG/M
3300009409|Ga0114993_11236629Not Available525Open in IMG/M
3300009420|Ga0114994_10034905Not Available3506Open in IMG/M
3300009420|Ga0114994_10130982Not Available1702Open in IMG/M
3300009420|Ga0114994_10227462Not Available1252Open in IMG/M
3300009420|Ga0114994_10280798Not Available1112Open in IMG/M
3300009420|Ga0114994_10547338Not Available761Open in IMG/M
3300009705|Ga0115000_10039127Not Available3285Open in IMG/M
3300009705|Ga0115000_10045288Not Available3027Open in IMG/M
3300009706|Ga0115002_10839623Not Available639Open in IMG/M
3300009786|Ga0114999_10057873Not Available3511Open in IMG/M
3300009786|Ga0114999_10073181Not Available3053Open in IMG/M
3300010316|Ga0136655_1003401Not Available6548Open in IMG/M
3300010368|Ga0129324_10100245Not Available1250Open in IMG/M
3300010883|Ga0133547_10128700Not Available5542Open in IMG/M
3300010883|Ga0133547_10249585Not Available3728Open in IMG/M
3300010883|Ga0133547_10505085Not Available2441Open in IMG/M
3300010883|Ga0133547_10605777Not Available2189Open in IMG/M
3300012920|Ga0160423_10228880Not Available1290Open in IMG/M
3300012920|Ga0160423_10529388Not Available801Open in IMG/M
3300012936|Ga0163109_10704369Not Available738Open in IMG/M
3300017765|Ga0181413_1212718Not Available576Open in IMG/M
3300017818|Ga0181565_10637241Not Available681Open in IMG/M
3300017824|Ga0181552_10608688Not Available506Open in IMG/M
3300017950|Ga0181607_10479523Not Available667Open in IMG/M
3300017967|Ga0181590_10273738Not Available1238Open in IMG/M
3300018048|Ga0181606_10360994Not Available786Open in IMG/M
3300018420|Ga0181563_10570651Not Available631Open in IMG/M
3300020053|Ga0181595_10117637Not Available1270Open in IMG/M
3300020174|Ga0181603_10302300Not Available617Open in IMG/M
3300020274|Ga0211658_1118062All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium TMED220513Open in IMG/M
3300020394|Ga0211497_10075333Not Available1405Open in IMG/M
3300020397|Ga0211583_10127794Not Available945Open in IMG/M
3300020400|Ga0211636_10137460Not Available972Open in IMG/M
3300020403|Ga0211532_10398631Not Available514Open in IMG/M
3300020404|Ga0211659_10016709Not Available3632Open in IMG/M
3300020405|Ga0211496_10001607Not Available8581Open in IMG/M
3300020410|Ga0211699_10230688Not Available711Open in IMG/M
3300020417|Ga0211528_10211289Not Available743Open in IMG/M
3300020438|Ga0211576_10001508Not Available17677Open in IMG/M
3300020438|Ga0211576_10100286Not Available1601Open in IMG/M
3300020440|Ga0211518_10056167All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → Porticoccus → unclassified Porticoccus → Porticoccus sp.2230Open in IMG/M
3300020446|Ga0211574_10007674Not Available5327Open in IMG/M
3300020446|Ga0211574_10053414All Organisms → Viruses → Predicted Viral1817Open in IMG/M
3300020447|Ga0211691_10154961Not Available869Open in IMG/M
3300020448|Ga0211638_10102890All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Cellvibrionales → Porticoccaceae → Porticoccus → unclassified Porticoccus → Porticoccus sp.1275Open in IMG/M
3300020460|Ga0211486_10023469All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium3046Open in IMG/M
3300020469|Ga0211577_10024146Not Available4702Open in IMG/M
3300020477|Ga0211585_10031709Not Available4145Open in IMG/M
3300021185|Ga0206682_10033673Not Available3007Open in IMG/M
3300021964|Ga0222719_10423176Not Available822Open in IMG/M
3300021964|Ga0222719_10828327Not Available506Open in IMG/M
(restricted) 3300022920|Ga0233426_10048878Not Available2034Open in IMG/M
(restricted) 3300023109|Ga0233432_10009394Not Available7990Open in IMG/M
(restricted) 3300023109|Ga0233432_10013833Not Available6253Open in IMG/M
(restricted) 3300023109|Ga0233432_10264636Not Available815Open in IMG/M
(restricted) 3300023109|Ga0233432_10359230Not Available651Open in IMG/M
3300025818|Ga0208542_1112878Not Available770Open in IMG/M
3300025828|Ga0208547_1138222Not Available707Open in IMG/M
3300025892|Ga0209630_10334801Not Available676Open in IMG/M
3300025894|Ga0209335_10163183Not Available1065Open in IMG/M
3300027672|Ga0209383_1174218Not Available648Open in IMG/M
3300027672|Ga0209383_1186701Not Available615Open in IMG/M
3300027687|Ga0209710_1034984Not Available2428Open in IMG/M
3300027779|Ga0209709_10139574Not Available1205Open in IMG/M
3300027813|Ga0209090_10063239Not Available2053Open in IMG/M
3300027813|Ga0209090_10454583Not Available605Open in IMG/M
3300027813|Ga0209090_10565168Not Available519Open in IMG/M
3300027838|Ga0209089_10032645Not Available3501Open in IMG/M
3300027847|Ga0209402_10053976All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Nitrospinae → unclassified Nitrospinota → Nitrospinae bacterium SCGC AAA008-D052894Open in IMG/M
3300028280|Ga0228646_1112184Not Available665Open in IMG/M
3300031143|Ga0308025_1086651Not Available1163Open in IMG/M
3300031143|Ga0308025_1106101Not Available1029Open in IMG/M
3300031143|Ga0308025_1127378Not Available918Open in IMG/M
3300031510|Ga0308010_1060908Not Available1525Open in IMG/M
3300031519|Ga0307488_10003929Not Available12384Open in IMG/M
3300031519|Ga0307488_10115999Not Available1926Open in IMG/M
3300031519|Ga0307488_10294097Not Available1049Open in IMG/M
3300031519|Ga0307488_10422113Not Available818Open in IMG/M
3300031519|Ga0307488_10483001Not Available744Open in IMG/M
3300031519|Ga0307488_10850135Not Available500Open in IMG/M
3300032011|Ga0315316_10483175Not Available1039Open in IMG/M
3300032011|Ga0315316_11470321Not Available537Open in IMG/M
3300032073|Ga0315315_10065549Not Available3364Open in IMG/M
3300032278|Ga0310345_10037990Not Available4070Open in IMG/M
3300032278|Ga0310345_10312650Not Available1459Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine26.17%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine23.36%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh7.48%
Sackhole BrineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine5.61%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater4.67%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous4.67%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater3.74%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine3.74%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater2.80%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater1.87%
MarineEnvironmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine1.87%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.87%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water1.87%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine1.87%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.93%
MarineEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Marine0.93%
MarineEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine0.93%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater0.93%
Marine Surface WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Marine Surface Water0.93%
Marine EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Marine Estuarine0.93%
MEnvironmental → Aquatic → Marine → Unclassified → Unclassified → M0.93%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater0.93%
Macroalgal SurfaceHost-Associated → Algae → Green Algae → Ectosymbionts → Unclassified → Macroalgal Surface0.93%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2189573027Estuarine microbial communities from Columbia River, sample from CR-7km from mouth, GS312-FOS-0p8-CR7-chlmaxEnvironmentalOpen in IMG/M
3300000947Macroalgal surface ecosystem from Botany Bay, Sydney, Australia - BBAY92Host-AssociatedOpen in IMG/M
3300001966Marine microbial communities from Roca Redonda, Equador - GS030EnvironmentalOpen in IMG/M
3300001972Marine microbial communities from the Sargasso Sea - GS000dEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005430Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69EnvironmentalOpen in IMG/M
3300005731Seawater microbial communities from Vineyard Sound, MA, USA - succinate ammended T14EnvironmentalOpen in IMG/M
3300005837Exploring phylogenetic diversity in Port Hacking ocean in Sydney, Australia - Port Hacking PH4 TJ4-TJ18EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006193Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNAEnvironmentalOpen in IMG/M
3300006308Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500mEnvironmentalOpen in IMG/M
3300006310Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500mEnvironmentalOpen in IMG/M
3300006332Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT238_1_0200mEnvironmentalOpen in IMG/M
3300006947Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG017-DNAEnvironmentalOpen in IMG/M
3300007234Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNAEnvironmentalOpen in IMG/M
3300007291Seawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S7_td_AAIW_ad_750m_LV_AEnvironmentalOpen in IMG/M
3300009173Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134EnvironmentalOpen in IMG/M
3300009376Combined Assembly of Gp0137079, Gp0137080EnvironmentalOpen in IMG/M
3300009409Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150EnvironmentalOpen in IMG/M
3300009420Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152EnvironmentalOpen in IMG/M
3300009705Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128EnvironmentalOpen in IMG/M
3300009706Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86EnvironmentalOpen in IMG/M
3300009786Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126EnvironmentalOpen in IMG/M
3300010316Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300010883western Arctic Ocean co-assemblyEnvironmentalOpen in IMG/M
3300012920Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St8 metaGEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017818Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017824Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017950Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041413US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017967Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018048Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041412US metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018420Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020053Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041401AS metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020174Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 041409US metaG (spades assembly)EnvironmentalOpen in IMG/M
3300020274Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX556029-ERR598943)EnvironmentalOpen in IMG/M
3300020394Marine microbial communities from Tara Oceans - TARA_B000000557 (ERX556068-ERR599026)EnvironmentalOpen in IMG/M
3300020397Marine microbial communities from Tara Oceans - TARA_B100000123 (ERX556052-ERR599075)EnvironmentalOpen in IMG/M
3300020400Marine microbial communities from Tara Oceans - TARA_B100001115 (ERX555947-ERR598992)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020404Marine microbial communities from Tara Oceans - TARA_B100000900 (ERX555954-ERR598978)EnvironmentalOpen in IMG/M
3300020405Marine microbial communities from Tara Oceans - TARA_B000000532 (ERX556129-ERR599012)EnvironmentalOpen in IMG/M
3300020410Marine microbial communities from Tara Oceans - TARA_B100000519 (ERX555959-ERR599148)EnvironmentalOpen in IMG/M
3300020417Marine microbial communities from Tara Oceans - TARA_B100000073 (ERX556034-ERR599082)EnvironmentalOpen in IMG/M
3300020438Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)EnvironmentalOpen in IMG/M
3300020440Marine microbial communities from Tara Oceans - TARA_E500000178 (ERX555952-ERR599043)EnvironmentalOpen in IMG/M
3300020446Marine microbial communities from Tara Oceans - TARA_B100001287 (ERX556031-ERR598989)EnvironmentalOpen in IMG/M
3300020447Marine microbial communities from Tara Oceans - TARA_B100000745 (ERX556090-ERR599159)EnvironmentalOpen in IMG/M
3300020448Marine microbial communities from Tara Oceans - TARA_B100000941 (ERX555919-ERR598954)EnvironmentalOpen in IMG/M
3300020460Marine microbial communities from Tara Oceans - TARA_A100001037 (ERX555931-ERR599097)EnvironmentalOpen in IMG/M
3300020469Marine microbial communities from Tara Oceans - TARA_B100001093 (ERX555967-ERR599052)EnvironmentalOpen in IMG/M
3300020477Marine microbial communities from Tara Oceans - TARA_B100001123 (ERX555935-ERR599156)EnvironmentalOpen in IMG/M
3300021185Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 40m 12015EnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022920 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_10_MGEnvironmentalOpen in IMG/M
3300023109 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_10_MGEnvironmentalOpen in IMG/M
3300025818Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300025892Pelagic Microbial community sample from North Sea - COGITO 998_met_01 (SPAdes)EnvironmentalOpen in IMG/M
3300025894Pelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)EnvironmentalOpen in IMG/M
3300027672Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG029-DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027687Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_138 (SPAdes)EnvironmentalOpen in IMG/M
3300027779Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136 (SPAdes)EnvironmentalOpen in IMG/M
3300027813Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152 (SPAdes)EnvironmentalOpen in IMG/M
3300027838Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)EnvironmentalOpen in IMG/M
3300027847Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126 (SPAdes)EnvironmentalOpen in IMG/M
3300028280Seawater microbial communities from Monterey Bay, California, United States - 58DEnvironmentalOpen in IMG/M
3300031143Marine microbial communities from water near the shore, Antarctic Ocean - #422EnvironmentalOpen in IMG/M
3300031510Marine microbial communities from water near the shore, Antarctic Ocean - #129EnvironmentalOpen in IMG/M
3300031519Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2EnvironmentalOpen in IMG/M
3300032011Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032278Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MGEnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GS312G0146KB_003606902189573027Marine EstuarineMKFQIEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKINDIS
BBAY92_1001124623300000947Macroalgal SurfaceMKFQIDNFIDFHVLFMTICILIAYEYIMNSSNIIIEKNK*
GOS2245_108656943300001966MarineMKFQIEDFIDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKLKNK*
GOS2216_1009810623300001972MarineMKIDDFIDYHTLFMTMCIVIAYRYITTDTNIILEKNIQ*
Ga0073579_128837123300005239MarineMKFQIEDFIDFHVLFMTICVLIAYEYIMNGTNIIVEKKLN*
Ga0066849_1008187113300005430MarineMKFQIDDFIDFHVLFMTICILIAYEYIMNGSNIIIEKKLNDKL*
Ga0076919_1035902163300005731MMKFQIEDFIDFHVFFMTICILIAYEYIMNGTNIIIEKKINDKL*
Ga0078893_1038843133300005837Marine Surface WaterMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKINDIS*
Ga0075474_1008358333300006025AqueousDFIDFHVLFMTICILIAYEYIMNGTNIIIEKKLNDIS*
Ga0075478_1018953023300006026AqueousMKLDDFIDFHVLFMTICILIAYEYIMNGTNIIIEKKLNDIS*
Ga0075445_1000510753300006193MarineMTIDDFIDFHALFLTASAVIAYKYITKENNVIFERKKI*
Ga0075445_1010645423300006193MarineMNFKIDDYIDFHILFMTISIVIAYKYITDESNIIVEKKN*
Ga0075445_1019245513300006193MarineMNLKSFKIENYIDFDVLFMTICILIFLEYIMNHSDIIIEKKYTDK*
Ga0068470_113017213300006308MarineMKIEDIIDYHTLFMTMCIVIAYKYITIEENIILEKKIQ*
Ga0068471_157171833300006310MarineMKIEDIIDYHTLFMTMCIVIAYKYITIEENIILEKKLQ*
Ga0068500_134310523300006332MarineMNIKIENYIDFHVLFMTICILIAYEYIMNNSNIIVEKKIKDI*
Ga0075444_1028199523300006947MarineMNFKIEDYIDFHVLFMTISITIAYKYITNESNIIVEKKDFRTSK*
Ga0075460_1013362423300007234AqueousMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLNDKL*
Ga0066367_131949823300007291MarineMDIEDYIDFKVLFTTMCIVIAYKYITLEEDIIIERKLS*
Ga0114996_1019376023300009173MarineMTFKDFQIDDYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK*
Ga0114996_1035626433300009173MarineMNLKDFKLEDYIDFHVLFMTMCILVLYHYIMNDSNIIIEKKKP*
Ga0118722_131620623300009376MarineMDIEDYIDFKVIFTTMCIVIAYKYITHDENIIIEKKI*
Ga0114993_1123662913300009409MarineMNFKIEDYIDFHVLFMTISIIIAYKYITDESNIIV
Ga0114994_1003490543300009420MarineMNLKSFKIENYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK*
Ga0114994_1013098243300009420MarineMNFEIEDYIDFHVLFVTMCIVIAYRYITDEQDIIVERKID*
Ga0114994_1022746233300009420MarineMTFKIENYIDFHVLFMTICILIAYEYIMNGSNIIIEKKIKDIS*
Ga0114994_1028079823300009420MarineMKFEIENYIDFHVLFSTICIVIAYKYITNEQNIIIEKKYNY*
Ga0114994_1054733823300009420MarineKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKK*
Ga0115000_1003912713300009705MarineMNFKIEDYIDFHVLFMTISIIIAYKYITDESNIIVEKKGIK*
Ga0115000_1004528873300009705MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKK*
Ga0115002_1083962333300009706MarineMNLKDFKLEDYIDFHVLFMTMCILVLYHYVMNDSNIIVEKKINDK*
Ga0114999_1005787333300009786MarineMNFKDFKIDDLIDFHVLFMTMCILIAYHYIMNDSNIIVEKKINDK*
Ga0114999_1007318113300009786MarineKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKN*
Ga0136655_100340143300010316Freshwater To Marine Saline GradientMKLEDFIDFHVLFMTICVLIAYEYIMNGTNIIVEKKINDK*
Ga0129324_1010024523300010368Freshwater To Marine Saline GradientMKFQIEDFIDFHVLFMTICVLIGYEYIMNGTNIIVEKKINDKL*
Ga0133547_1012870023300010883MarineMNFKIEEYIDFHVLFMTISIIIAYKYITDESNIIVEKRNINK*
Ga0133547_1024958523300010883MarineMNFKIEDYIDFHVLFMTISLIIAYKYITDGNNIIVEKKN*
Ga0133547_1050508513300010883MarineMNSKIEDYIDFHVLFMTISIIIAYKYITEESNIIIEKKEIK*
Ga0133547_1060577753300010883MarineMNFKVEDYIDFHVLFMTITIIIAYKYITDEVNIIIETQT
Ga0160423_1022888033300012920Surface SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIIEKKINDIS*
Ga0160423_1052938823300012920Surface SeawaterMKFQIDDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKLNDK*
Ga0163109_1070436923300012936Surface SeawaterMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLNDK*
Ga0181413_121271813300017765SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKLKDK
Ga0181565_1063724133300017818Salt MarshMKFQIEDFIDFHVLFMTICILIAYEYIMNSSNIIVE
Ga0181552_1060868823300017824Salt MarshMKLDDFIDFHVLFMTICILIAYEYIMNGTNIIIEKKLNDIS
Ga0181607_1047952313300017950Salt MarshMKLDDFIDFHVLFMTICILIAYEYIMNGSNIIIEKKIKDIS
Ga0181590_1027373833300017967Salt MarshMKLDDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKINDKL
Ga0181606_1036099413300018048Salt MarshYIDFHVLFMTICILIGYEYIMNNSNIIIEKKIKDI
Ga0181563_1057065113300018420Salt MarshMKLDDFIDFHVLFMAICILIAYEYIMNGSNIIVEKKLNDIS
Ga0181595_1011763723300020053Salt MarshMNIKIENYIDFHVLFMTICILIGYEYIMNNSNIIIEKKIKDI
Ga0181603_1030230013300020174Salt MarshMNIKIENYIDFHVLFMTICILIGYEYIMNNSNIIIEK
Ga0211658_111806223300020274MarineNMRFQIEDFIDFHVLFMTICILIAYEYIMNESNIIVEKKIK
Ga0211497_1007533323300020394MarineMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLKDK
Ga0211583_1012779433300020397MarineMRFQIEDFIDFHVLFMTICILIAYEYIMNESNIIVEKKIKG
Ga0211636_1013746033300020400MarineMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKIKDKL
Ga0211532_1039863113300020403MarineMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKINDKL
Ga0211659_1001670933300020404MarineMRFQIEDFIDFHVLFMTICILIAYEYIMNESNIIVEKKIK
Ga0211496_1000160783300020405MarineMKFQIDDFINFHVLFMTICILIAYEYIMNGSNIIIEKKIKDK
Ga0211699_1023068823300020410MarineMKIENIIDYHTLFMTMCIVIAYKYITIEENIILEKKI
Ga0211528_1021128923300020417MarineMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKNK
Ga0211576_10001508133300020438MarineMKLEDFIDFHILFMTICILIAYEYIMGGTNIIIEKKIKDK
Ga0211576_1010028633300020438MarineMKLDDFIDFHVLFTTICIVIAYQYITNEMNIIVEKKISL
Ga0211518_1005616753300020440MarineMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIIEKKINDKL
Ga0211574_1000767483300020446MarineMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKNLNDIS
Ga0211574_1005341433300020446MarineMKFEIENYIDFHVLFTTISIVIAYKYITHEENIIIEKKIG
Ga0211691_1015496113300020447MarineMKINNIIDYHTLFMTMCIVIAYKYITIEENIILEKKYK
Ga0211638_1010289023300020448MarineMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKINDK
Ga0211486_1002346943300020460MarineMDIEDYIDFKVLFTTMCIVIAYKYITLEENIIIERKLT
Ga0211577_1002414673300020469MarineMKFEIENYIDFHILFTTICIVIAYKYITNEQNIIIEKKFN
Ga0211585_1003170953300020477MarineMKIEDIIDYHTLFMTMCIVIAYKYITIEENIILEKKI
Ga0206682_1003367353300021185SeawaterMKLEDFIDFHVLFMTICILIAYEYIMGQSNIIVEKKLKDK
Ga0222719_1042317623300021964Estuarine WaterILLNINMKLEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKINDKL
Ga0222719_1082832713300021964Estuarine WaterMKLEDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKIND
(restricted) Ga0233426_1004887843300022920SeawaterMKFQIDDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKLNDK
(restricted) Ga0233432_10009394123300023109SeawaterMTFKIDDYIDFHVLFMTICILIAYEYIMNGSNIIIKKNII
(restricted) Ga0233432_1001383333300023109SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNGSNIIVEKKLKDK
(restricted) Ga0233432_1026463623300023109SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNETNIIIEKKINDK
(restricted) Ga0233432_1035923033300023109SeawaterMKLDDFIDFHVLFMTICILIAYEYIMNGTNIIVEKKLNDK
Ga0208542_111287823300025818AqueousMKFQIDDFIDFHVLFMTICILIAYEYIMNSSNIIVEKKLNDKL
Ga0208547_113822223300025828AqueousFQIDDFIDFHVFFMTICILIAYEYIMNGTNIIVEKKINDK
Ga0209630_1033480123300025892Pelagic MarineMKLEDFIDFHVLFMTICVLIGYEYIMNDTNIIIEKKINDKL
Ga0209335_1016318333300025894Pelagic MarineMKLQIEDFIDFHVLFMTICIIIAYEYIMGQSNIIVEKKLKDK
Ga0209383_117421823300027672MarineMNFKIDDYIDFHILFMTISIVIAYKYITDESNIIVEKKN
Ga0209383_118670123300027672MarineMTIDDFIDFHALFLTASAVIAYKYITKENNIIFERKKI
Ga0209710_103498433300027687MarineMNLKSFKIENYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK
Ga0209709_1013957423300027779MarineMTFKIENYIDFHVLFMTICILIAYEYIMNGSNIIIEKKIKDIS
Ga0209090_1006323913300027813MarineMNFKDFKIDDYIDFDTLFMTICILIFYEYIMNNSNI
Ga0209090_1045458323300027813MarineMNFKIEDYIDFHVLFMTISLIIAYKYITDGNNIIVEKKN
Ga0209090_1056516823300027813MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKN
Ga0209089_1003264543300027838MarineMTFKDFQIDDYIDFDTLFMTICILIFYEYIMNHSDIIIEKKYTDK
Ga0209402_1005397643300027847MarineMKFEIENYIDFHVLFSTICIVIAYKYITNEQNIIIEKNLMIENKFN
Ga0228646_111218413300028280SeawaterMKLEDFIDFHVLFMTICILIAYEYIMNSSNIIIEKKLNDKL
Ga0308025_108665133300031143MarineYKMNFKIEDYIDFHVLFMTISIVIAYKYITGESNIIIEKK
Ga0308025_110610113300031143MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKEINY
Ga0308025_112737833300031143MarineMNLKSFKIENYIDFDVLFMTICILIFLEYIMNHSDIIIEKKYTDK
Ga0308010_106090823300031510MarineMNFKIEDYIDFHVLFMTISIVIAYKYITDESNIIVEKKEINYDKKNI
Ga0307488_1000392973300031519Sackhole BrineMNFKDFKIDDYIDFDTLFMTICILIFYEYIMNNSDIIIEKKYTDK
Ga0307488_1011599933300031519Sackhole BrineMNFKDFKIDDYIDFDTLFMTICILIFYEYIMNNSNIIIEKKSTDK
Ga0307488_1029409723300031519Sackhole BrineDDYIDFDTLFMTICILIFYEYIMNNSNIIIEKKSTDK
Ga0307488_1042211333300031519Sackhole BrineMNFKDFNIDDYIDFDTLFMTICVLIFYEYIMNNSDIIIEKKYTDK
Ga0307488_1048300113300031519Sackhole BrineMNFKDLNIDDYIDFDTLFMTICVLIFYEYIMNNSDIIIEKKYTDK
Ga0307488_1085013513300031519Sackhole BrineMNFKDFNIDDYIDFDTLFMTVCILIFYEYIMNNSNIIIEKKYKDK
Ga0315316_1048317523300032011SeawaterMDIEDYIDLKVLFTTMCIVIAYKYITLEEDIIIEKKLS
Ga0315316_1147032113300032011SeawaterMKIENIIDYHTLFMTMCIVIAYKYITIEENIILEQKI
Ga0315315_1006554933300032073SeawaterMNIKIENYIDFHVLFMTICILIAYEYIMNNSNIIVEKKIKDI
Ga0310345_1003799083300032278SeawaterMDIEDYIDFKVIFTTMCIVIAYKYITLEEDIIIEKKLS
Ga0310345_1031265013300032278SeawaterMDIEDYIDFKVLFTTMCIVIAYKYITLEEDIIIERKLS


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