Metagenome Family F092313

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092313
Family Type	Metagenome
Number of Sequences	107
Average Sequence Length	97 residues
Representative Sequence	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIQDSSTIDCEVRFLSKTLKMGTHTVTETLDEFRRMGLVKFIPIKGRGHKRFIELMNAGK
Number of Associated Samples	49
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	83.18 %
% of genes near scaffold ends (potentially truncated)	29.91 %
% of genes from short scaffolds (< 2000 bps)	90.65 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (73.832 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil (38.318 % of family members)
Environment Ontology (ENVO)	Unclassified (38.318 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (43.925 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.44% β-sheet: 10.32% Coil/Unstructured: 45.24%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.11: Helicase DNA-binding domain	d1fnna1	1fnn	0.76025
a.4.5.0: automated matches	d2fe3a_	2fe3	0.74695
a.4.5.0: automated matches	d3kcca2	3kcc	0.74601
a.4.5.4: CAP C-terminal domain-like	d2gaua1	2gau	0.7426
a.4.5.0: automated matches	d4mtdb_	4mtd	0.74225

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00072	Response_reg	7.48
PF06723	MreB_Mbl	6.54
PF01699	Na_Ca_ex	3.74
PF07238	PilZ	2.80
PF02201	SWIB	1.87
PF01970	TctA	1.87
PF12773	DZR	1.87
PF12728	HTH_17	1.87
PF00565	SNase	1.87
PF10387	DUF2442	1.87
PF14321	DUF4382	0.93
PF00582	Usp	0.93
PF12770	CHAT	0.93
PF00924	MS_channel	0.93
PF12146	Hydrolase_4	0.93
PF13683	rve_3	0.93
PF14196	ATC_hydrolase	0.93
PF13711	DUF4160	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1077	Cell shape-determining ATPase MreB, actin-like superfamily	Cell cycle control, cell division, chromosome partitioning [D]	6.54
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	3.74
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	3.74
COG1784	TctA family transporter	General function prediction only [R]	1.87
COG3333	TctA family transporter	General function prediction only [R]	1.87
COG5531	DNA-binding SWIB/MDM2 domain	Chromatin structure and dynamics [B]	1.87
COG0668	Small-conductance mechanosensitive channel	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3264	Small-conductance mechanosensitive channel MscK	Cell wall/membrane/envelope biogenesis [M]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
All Organisms	root	All Organisms	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
cellular organisms	root	All Organisms → cellular organisms	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	26.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.82 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	1.87 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	11.21 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.93 %
Candidatus Latescibacteria	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	11.21 %
unclassified Candidatus Latescibacteria	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria	0.93 %
Chlorobi	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi	0.93 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.93 %
Alphaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Desulfobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	5.61 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	2.80 %
Syntrophorhabdales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales	0.93 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.93 %
Micavibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Micavibrio	0.93 %
Chlorobia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia	0.93 %
Marinobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Desulfobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae	4.67 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	1.87 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Syntrophorhabdaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae	0.93 %
unclassified Micavibrio	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Micavibrio → unclassified Micavibrio	0.93 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.93 %
Chlorobiales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales	0.93 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
unclassified Desulfobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae	4.67 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	1.87 %
unclassified Syntrophorhabdaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae	0.93 %
Micavibrio sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Micavibrio → unclassified Micavibrio → Micavibrio sp.	0.93 %
Chlorobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.93 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	73.83 %
Desulfobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	4.67 %
Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	1.87 %
Syntrophorhabdaceae bacterium PtaU1.Bin034	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	0.93 %
Micavibrio sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Micavibrio → unclassified Micavibrio → Micavibrio sp.	0.93 %
Chlorobiaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Marinobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	0.93 %
Candidatus Latescibacteria bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001213\|JGIcombinedJ13530_107569433	Not Available	617	Open in IMG/M
3300001213\|JGIcombinedJ13530_109815214	Not Available	812	Open in IMG/M
3300002961\|JGI11641J44799_10029795	Not Available	1613	Open in IMG/M
3300002961\|JGI11641J44799_10216449	Not Available	538	Open in IMG/M
3300003432\|JGI20214J51088_10044902	All Organisms → cellular organisms → Bacteria	3070	Open in IMG/M
3300003858\|Ga0031656_10158576	Not Available	789	Open in IMG/M
3300004057\|Ga0055496_10033258	Not Available	1030	Open in IMG/M
3300005254\|Ga0068714_10081382	Not Available	1664	Open in IMG/M
3300005832\|Ga0074469_10096973	Not Available	500	Open in IMG/M
3300005832\|Ga0074469_10194420	All Organisms → cellular organisms → Bacteria → Proteobacteria	1687	Open in IMG/M
3300005832\|Ga0074469_10315341	Not Available	765	Open in IMG/M
3300006224\|Ga0079037_100040175	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	3562	Open in IMG/M
3300006224\|Ga0079037_100171143	All Organisms → cellular organisms → Bacteria → Proteobacteria	1923	Open in IMG/M
3300006224\|Ga0079037_100364873	Not Available	1358	Open in IMG/M
3300006224\|Ga0079037_100421579	All Organisms → cellular organisms → Bacteria	1267	Open in IMG/M
3300006224\|Ga0079037_100498904	Not Available	1168	Open in IMG/M
3300006224\|Ga0079037_100832011	Not Available	908	Open in IMG/M
3300006224\|Ga0079037_102254868	Not Available	544	Open in IMG/M
3300006930\|Ga0079303_10005195	All Organisms → cellular organisms → Bacteria → Proteobacteria	3640	Open in IMG/M
3300009009\|Ga0105105_10196440	Not Available	1043	Open in IMG/M
3300009037\|Ga0105093_10102794	Not Available	1380	Open in IMG/M
3300009037\|Ga0105093_10592447	Not Available	627	Open in IMG/M
3300009085\|Ga0105103_10488736	Not Available	690	Open in IMG/M
3300009085\|Ga0105103_10970126	Not Available	501	Open in IMG/M
3300009091\|Ga0102851_10255007	All Organisms → cellular organisms → Bacteria	1685	Open in IMG/M
3300009091\|Ga0102851_10402935	Not Available	1377	Open in IMG/M
3300009091\|Ga0102851_11208926	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	832	Open in IMG/M
3300009091\|Ga0102851_11211338	Not Available	831	Open in IMG/M
3300009091\|Ga0102851_11320351	Not Available	798	Open in IMG/M
3300009111\|Ga0115026_10715338	Not Available	774	Open in IMG/M
3300009111\|Ga0115026_11845959	Not Available	513	Open in IMG/M
3300009131\|Ga0115027_10167252	Not Available	1365	Open in IMG/M
3300009153\|Ga0105094_10391825	Not Available	804	Open in IMG/M
3300009153\|Ga0105094_10436331	Not Available	760	Open in IMG/M
3300009165\|Ga0105102_10133604	Not Available	1195	Open in IMG/M
3300009167\|Ga0113563_10578468	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1240	Open in IMG/M
3300009167\|Ga0113563_10713634	Not Available	1125	Open in IMG/M
3300009167\|Ga0113563_10721498	Not Available	1120	Open in IMG/M
3300009167\|Ga0113563_10816046	Not Available	1058	Open in IMG/M
3300009167\|Ga0113563_10875043	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15	1024	Open in IMG/M
3300009167\|Ga0113563_10948318	Not Available	986	Open in IMG/M
3300009167\|Ga0113563_11156538	Not Available	899	Open in IMG/M
3300009167\|Ga0113563_12482551	Not Available	625	Open in IMG/M
3300009169\|Ga0105097_10031822	All Organisms → cellular organisms → Bacteria	2818	Open in IMG/M
3300009169\|Ga0105097_10163976	Not Available	1222	Open in IMG/M
3300009169\|Ga0105097_10273585	Not Available	932	Open in IMG/M
3300009171\|Ga0105101_10017998	All Organisms → cellular organisms → Bacteria	3400	Open in IMG/M
3300009171\|Ga0105101_10058506	Not Available	1873	Open in IMG/M
3300009171\|Ga0105101_10678727	Not Available	513	Open in IMG/M
3300009179\|Ga0115028_10235796	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1185	Open in IMG/M
3300026492\|Ga0256802_1042667	Not Available	620	Open in IMG/M
3300027690\|Ga0209164_1258563	Not Available	547	Open in IMG/M
3300027713\|Ga0209286_1089443	Not Available	1148	Open in IMG/M
3300027715\|Ga0208665_10034991	Not Available	1414	Open in IMG/M
3300027715\|Ga0208665_10180306	Not Available	664	Open in IMG/M
3300027877\|Ga0209293_10039423	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1866	Open in IMG/M
3300027887\|Ga0208980_10044584	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Syntrophorhabdales → Syntrophorhabdaceae → unclassified Syntrophorhabdaceae → Syntrophorhabdaceae bacterium PtaU1.Bin034	2582	Open in IMG/M
3300027887\|Ga0208980_10132889	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1459	Open in IMG/M
3300027887\|Ga0208980_10356658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Marinobacteraceae → Marinobacter	846	Open in IMG/M
3300027887\|Ga0208980_10397946	Not Available	795	Open in IMG/M
3300027887\|Ga0208980_10825611	Not Available	517	Open in IMG/M
3300027897\|Ga0209254_10200017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Alphaproteobacteria incertae sedis → Micavibrio → unclassified Micavibrio → Micavibrio sp.	1598	Open in IMG/M
3300031873\|Ga0315297_10428883	All Organisms → cellular organisms → Bacteria	1110	Open in IMG/M
3300032177\|Ga0315276_10580272	Not Available	1205	Open in IMG/M
3300032342\|Ga0315286_10231550	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Chlorobi → Chlorobia → Chlorobiales → Chlorobiaceae	1969	Open in IMG/M
3300032401\|Ga0315275_12366924	Not Available	552	Open in IMG/M
3300033408\|Ga0316605_12048900	Not Available	557	Open in IMG/M
3300033408\|Ga0316605_12102323	Not Available	549	Open in IMG/M
3300033413\|Ga0316603_10245549	Not Available	1553	Open in IMG/M
3300033413\|Ga0316603_10726446	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	929	Open in IMG/M
3300033414\|Ga0316619_10281730	All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Latescibacteria → unclassified Candidatus Latescibacteria → Candidatus Latescibacteria bacterium	1256	Open in IMG/M
3300033414\|Ga0316619_10769093	Not Available	820	Open in IMG/M
3300033416\|Ga0316622_100160393	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales	2355	Open in IMG/M
3300033416\|Ga0316622_100270448	Not Available	1854	Open in IMG/M
3300033416\|Ga0316622_102915518	Not Available	546	Open in IMG/M
3300033418\|Ga0316625_101476715	Not Available	642	Open in IMG/M
3300033419\|Ga0316601_100167988	Not Available	1887	Open in IMG/M
3300033419\|Ga0316601_101043063	Not Available	817	Open in IMG/M
3300033419\|Ga0316601_101287925	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300033419\|Ga0316601_102177949	Not Available	558	Open in IMG/M
3300033434\|Ga0316613_10561132	Not Available	778	Open in IMG/M
3300033480\|Ga0316620_10579004	Not Available	1051	Open in IMG/M
3300033481\|Ga0316600_10834662	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	650	Open in IMG/M
3300033482\|Ga0316627_102205666	Not Available	576	Open in IMG/M
3300033485\|Ga0316626_10903518	Not Available	779	Open in IMG/M
3300033486\|Ga0316624_10954852	Not Available	771	Open in IMG/M
3300033486\|Ga0316624_11991599	Not Available	539	Open in IMG/M
3300033487\|Ga0316630_12293758	Not Available	500	Open in IMG/M
3300033488\|Ga0316621_10176259	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae → unclassified Desulfobacteraceae → Desulfobacteraceae bacterium	1308	Open in IMG/M
3300033513\|Ga0316628_100925440	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300033513\|Ga0316628_102337353	Not Available	707	Open in IMG/M
3300033513\|Ga0316628_102678389	Not Available	657	Open in IMG/M
3300033513\|Ga0316628_102755153	Not Available	647	Open in IMG/M
3300033521\|Ga0316616_100505050	Not Available	1386	Open in IMG/M
3300033521\|Ga0316616_100928574	Not Available	1077	Open in IMG/M
3300033521\|Ga0316616_100973199	Not Available	1055	Open in IMG/M
3300033521\|Ga0316616_101024650	Not Available	1032	Open in IMG/M
3300033521\|Ga0316616_102961389	Not Available	640	Open in IMG/M
3300033521\|Ga0316616_103709024	Not Available	575	Open in IMG/M
3300033521\|Ga0316616_104114540	Not Available	547	Open in IMG/M
3300033557\|Ga0316617_100013183	All Organisms → cellular organisms → Bacteria → Proteobacteria	3950	Open in IMG/M
3300033557\|Ga0316617_100036933	Not Available	2853	Open in IMG/M
3300033557\|Ga0316617_100087483	Not Available	2139	Open in IMG/M
3300033557\|Ga0316617_101415715	Not Available	698	Open in IMG/M
3300033557\|Ga0316617_101812916	Not Available	623	Open in IMG/M
3300033557\|Ga0316617_102431089	Not Available	543	Open in IMG/M
3300033557\|Ga0316617_102650936	Not Available	521	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.13%
Engineered	Engineered	1.87%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	57.01%
Terrestrial	Environmental → Terrestrial	41.12%
Lab Enrichment	Engineered → Lab Enrichment	1.87%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	43.93%
Soil	Environmental → Terrestrial → Soil	38.32%
Marine	Environmental → Aquatic → Marine	10.28%
Sediment	Environmental → Aquatic → Sediment	2.80%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface	2.80%
Defined Media	Engineered → Lab Enrichment → Defined Media	1.87%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	38.32%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	19.63%
Sediment	Environmental → Aquatic → Freshwater → Sediment	18.69%
Wetlands	Environmental → Aquatic → Marine → Wetlands	10.28%
Lake	Environmental → Aquatic → Freshwater → Lake	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified	2.80%
Lentic	Environmental → Aquatic → Freshwater → Lentic	1.87%
Anaerobic Media	Engineered → Lab Enrichment → Defined Media → Anaerobic Media	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	38.32%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	18.69%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	18.69%
Sediment	Environmental → Aquatic → Marine → Wetlands → Sediment	9.35%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	3.74%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.80%
Unclassified	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified	2.80%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.87%
Unclassified	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified	1.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.93%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	38.32%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	18.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	14.02%
Wetland	Environmental → Aquatic → Marine → Wetlands → Sediment → Wetland	9.35%
Wetland	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Wetland	4.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	3.74%
Sediment (Intertidal)	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)	2.80%
Deep Subsurface	Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface	2.80%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.87%
Enrichment Culture	Engineered → Lab Enrichment → Defined Media → Anaerobic Media → Unclassified → Enrichment Culture	1.87%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Sediment	0.93%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001213	Combined assembly of wetland microbial communities from Twitchell Island in the Sacramento Delta (Jan 2013 JGI Velvet Assembly)	Environmental	Open in IMG/M
3300002961	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Feb2011 Site A1 Bulk	Environmental	Open in IMG/M
3300003432	Wetland sediment microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site B2 Bulk	Environmental	Open in IMG/M
3300003858	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI	Environmental	Open in IMG/M
3300004057	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleC_D2	Environmental	Open in IMG/M
3300005254	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG	Engineered	Open in IMG/M
3300005832	Microbial communities from Baker Bay sediment, Columbia River estuary, Washington - S.41_BBB	Environmental	Open in IMG/M
3300006224	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 4 metaG	Environmental	Open in IMG/M
3300006930	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC	Environmental	Open in IMG/M
3300009009	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009037	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 1-3cm March2015	Environmental	Open in IMG/M
3300009085	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015	Environmental	Open in IMG/M
3300009091	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300009111	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1	Environmental	Open in IMG/M
3300009131	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Open_0915_D1	Environmental	Open in IMG/M
3300009153	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009165	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 1-3cm September2015	Environmental	Open in IMG/M
3300009167	Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG - Illumina Assembly (version 2)	Environmental	Open in IMG/M
3300009169	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm May2015	Environmental	Open in IMG/M
3300009171	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 19-21cm May2015	Environmental	Open in IMG/M
3300009179	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Plant_0915_D1	Environmental	Open in IMG/M
3300026492	Sediment microbial communities from tidal freshwater marsh on Altamaha River, Georgia, United States - 10-16 CS5	Environmental	Open in IMG/M
3300027690	Enrichment culture microbial communities from rom New York Harbor, USA that are MTBE-degrading - MTBE-NYH (New York Harbor Sulfidogenic) MetaG (SPAdes)	Engineered	Open in IMG/M
3300027713	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (3) Depth 10-12cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027715	Deep subsurface shale carbon reservoir microbial communities from Ohio, USA - Methanogen_OWC (SPAdes)	Environmental	Open in IMG/M
3300027877	Wetland microbial communities from Old Woman Creek Reserve in Ohio, USA - Mud_0915_D1 (SPAdes)	Environmental	Open in IMG/M
3300027887	Wetland microbial communities from Twitchell Island in the Sacramento Delta, sample from surface sediment Aug2011 Site A1 Bulk	Environmental	Open in IMG/M
3300027897	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - DIP11 DI (SPAdes)	Environmental	Open in IMG/M
3300031873	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G15_0	Environmental	Open in IMG/M
3300032177	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G05_0	Environmental	Open in IMG/M
3300032342	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G10_0	Environmental	Open in IMG/M
3300032401	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G03_0	Environmental	Open in IMG/M
3300033408	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day20_noCT	Environmental	Open in IMG/M
3300033413	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCT	Environmental	Open in IMG/M
3300033414	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_B	Environmental	Open in IMG/M
3300033416	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D5_C	Environmental	Open in IMG/M
3300033418	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D1_A	Environmental	Open in IMG/M
3300033419	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_noCT	Environmental	Open in IMG/M
3300033434	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_CT_b	Environmental	Open in IMG/M
3300033480	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D5_B	Environmental	Open in IMG/M
3300033481	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day5_CT	Environmental	Open in IMG/M
3300033482	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D1_C	Environmental	Open in IMG/M
3300033485	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_T1_C1_D5_A	Environmental	Open in IMG/M
3300033486	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_A	Environmental	Open in IMG/M
3300033487	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_May_M1_C1_D6_A	Environmental	Open in IMG/M
3300033488	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_OW2_C1_D1_C	Environmental	Open in IMG/M
3300033513	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M2_C1_D5_C	Environmental	Open in IMG/M
3300033521	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D1_B	Environmental	Open in IMG/M
3300033557	Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D2_B	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ13530_1075694332	3300001213	Wetland	MNAQKESFEFDLNTFYRLERTKRPGTSIAVYAELLAAMTIQNSATLDADVRFLTKTLKIGNKTLAETLNEFTRMGLVRFIPGKRRGNKRLVELMHEGK*
JGIcombinedJ13530_1098152141	3300001213	Wetland	MNAEKESFEFDLNTFYRLERTKRPSTSIAVYAELLATMAIQKTVRIECEVRFLCESLKMGTHTVTETLNELRRMGLVRLIPIKGRGNKRFIEMINKGK*
JGI11641J44799_100297953	3300002961	Wetland	MNAQKESFAFELDTLYRLEKAKRPSTSIAVYAELLAFTAIQNSSTIDCEVRFLCQTLKMGTHTVTETLNEFRRMGLVKFIPIKGRGKTRSIELVHEGK*
JGI11641J44799_102164491	3300002961	Wetland	FEFDLNTLYRLERTKRPSISIAVYVELLASMTIQNITTVDCEIRFLSKTLKIGAHTVTETFNEFRKMGLVRFIPGKGRGHKRFIEMIK*
JGI20214J51088_100449023	3300003432	Wetland	MNAQKESFEFDLNTLYRLERTRRPSTSIAVYAELLASMTIQNSTTIDCGVRFLSKTLKMGTHTVTETLNEFRRMGLVRFIPTKGRGRKRLIELVHERK*
Ga0031656_101585761	3300003858	Freshwater Lake Sediment	MDAQKELFEFELNTFYRLKRTKRPGASIAIYAELLASMAIQNSSTINCEVRFLSKTLKMGTHTVTETLNEFRRMGLVKFIPIKGRGNC*
Ga0055496_100332582	3300004057	Natural And Restored Wetlands	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIQESSRIDCEVRFLSRTLKMGTHTVTETLTEFRRMGLVKFIPSKKGGNKRFIELINVVK*
Ga0068714_100813822	3300005254	Enrichment Culture	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLTSMAIQNSTRIDCEVRFLCERLKMGTHTVTETLNDFTRMGLVKFIPIKGRGNKRSIELIDEER*
Ga0074469_100969731	3300005832	Sediment (Intertidal)	MNAQKEAFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIQESSRIDCEVRFLSNTLKMGTHTVTETLNEFRRMGLVKFIPSKKGGNKRFIELINVVK*
Ga0074469_101944203	3300005832	Sediment (Intertidal)	DLMNDQKESFAFELDTFYRLERTKRPSTSIAVYAELLASMAIQNSPTIDCEVRFLSNTLKMGTHSVTETLNDFKKMGLVKFIPSKKGGNKRFIELINEEK*
Ga0074469_103153413	3300005832	Sediment (Intertidal)	VQEPGESRPVQAGVQARKRRKGDLMNAQQEAFEFDLNTFYRLEKTERPSTSIAVNAELLASMAMQNNSTIDCGVRFLSESLKMGTHTVTETLIEFRKMGLVRFIPGKGGRNKRFIELIHEGK*
Ga0079037_1000401753	3300006224	Freshwater Wetlands	MNAQKESFAFELDTFYRLETTKRPSTSIAIYAELLAFMAIQGNSTVDCEVRSLSRTLKIGTHTVTETLYELWKMGLVRFIASKGRGHKRFIELINAGR*
Ga0079037_1001711432	3300006224	Freshwater Wetlands	MNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGRKRFVELRNVGK*
Ga0079037_1003648732	3300006224	Freshwater Wetlands	MNDQKESFAFELNTFYRLERTKRPSTSIAVYGELLASMTIQNSSTIDCEVRFLSQTLKMGTHTVTETLNEFRRMGLVKFIPTKGRGHKRFIEMINVGE*
Ga0079037_1004215791	3300006224	Freshwater Wetlands	LNTLYRLEKAKRPSTSIAVYAELLASMATQNSSTIDCDVRFLSQTLKMGTHTVTETLNEFRRMRLVRFIPIKGRGHKRFIELVDGGR*
Ga0079037_1004989042	3300006224	Freshwater Wetlands	MNAQKESFAFDLNTFYRLERTKRPSTSIAVYAELLASAAIQNNSTIDCGVRFLSESLKMGTHTVTGTLEELRRMGLVRFIPIKGRGNKRFIEMIHEGK*
Ga0079037_1008320112	3300006224	Freshwater Wetlands	MNAQRESFEFDLNTFYRLERTKRPSTSIAVYAELLAAMTIQNSSTIDCDVRFLCNTLKMGTHTVTETLTEFRKMGLVRFIPVKGRGHQRFIEMITAGK*
Ga0079037_1022548681	3300006224	Freshwater Wetlands	MNTQKESFEFDLNTLFRLERTKRPSTSIAVYAELLAAVAIQNSPTIDCQVRFLCQTLKMGTHTVTETLKEFRRMGLVRFIPTKGKGHKRFIELSNAGY*
Ga0079303_100051952	3300006930	Deep Subsurface	MNAQEKSFEFDLNTFYRLERTKRPSTSIAVYAELLASMTIQNSSTIDCEVRFLSESLKMGTHTVTETLTEFRRMGLVRFIPIKGRGRKRFIELIKVGG*
Ga0105105_101964402	3300009009	Freshwater Sediment	MNPQKESFEVDLDTFYRIETTKRPSTSIAVYAELLAFTAIQNSSTIDCEVRFLTKTLKMGTHTVTETLNEFRRMGLVRFILTKGRGNKRFIELITAGK*
Ga0105093_101027941	3300009037	Freshwater Sediment	NTLYRLEKTKRPSTSIAVYAELLASMAIQNSSTIDCEVRFLCQTLKMGTHTVTETLNEFRRMGLVKFIPIKGRGHKRFIELVYERK*
Ga0105093_105924471	3300009037	Freshwater Sediment	MNAQKESFRFDLNTLYRLEKTKRPGASIAVYAELLAAMMIQGGNTIDCEVRFLSQTLKMGTHTVTESLNEFRRMGLVRFIPQKKQYRKVHERRLSN*
Ga0105103_104887361	3300009085	Freshwater Sediment	MNLQKESFEFDLNTLYRLETTKRPSTSIAVYAELLAFTAIQNSSTIDCEVRFLCQTLKMGTHTVTETLNEFRRMGLVRLIPIKGRDHKRFIELVNEGDNQLAVCWLEAFIQ
Ga0105103_109701261	3300009085	Freshwater Sediment	QKEAFEVDLNTFYRLERTKRPITSIAVYAELLASMAIQNSPTINCEVRFLSKTLKIGTHTVTETLNEFRKMELVRFIPIKGKGHKRYIELINAGK*
Ga0102851_102550073	3300009091	Freshwater Wetlands	MNAQRESFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIHNSSTIDFEVRFLCQTLKMGTHTVTETLNEFRRMGLVRFISTKGRGSRLIQLVTGS*
Ga0102851_104029352	3300009091	Freshwater Wetlands	MRSDLMNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGRKRFVELRNVGK*
Ga0102851_112089263	3300009091	Freshwater Wetlands	MNTQKESFEFDLNTLFRLERTKRPSTSIAVYAELLAAVAIQNSPTIDCQVRFLCQTLKMGTHTVTETLEEFRRMGLVRFIPTKGKGHKRFIELSNAGY*
Ga0102851_112113382	3300009091	Freshwater Wetlands	MNAQTQSFEFDLNTFYRLERTRRPSTSIAVYAEFLASMAIQNSSTIDCEVRFLCNSLKMGTHTVTETLEEFRRMGLVRFIPIKGMGHKRLIELISEGK*
Ga0102851_113203512	3300009091	Freshwater Wetlands	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIQDSSTIDCEVRFLSKTLKMGTHTVTETLDEFRRMGLVKFIPIKGRGHKRFIELMNAGK*
Ga0115026_107153382	3300009111	Wetland	MNALKESFRFDLNTLYRLEKAKRPGASIAVYAELLASMTIQGSRTIDCEVRFLSQTLKMGTHTVLETLQELRRMGLLRFIPVKGRGHSRLIELIHEG*
Ga0115026_118459591	3300009111	Wetland	MRSDLMNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLTEFRKMGLVRFIRSKGRG
Ga0115027_101672521	3300009131	Wetland	MNAQKEAFEFDLNSLYWLETTKRPSTSIAICSELLASMTIQNSSTIDYEMRFLCNSLKMGTHTVIEILDELRRMGLVRFIPIKGRGHKRFIELLNEWK*
Ga0105094_103918252	3300009153	Freshwater Sediment	MNPQKESFEVDLDTFYRIETTKRPSTSIAVYAELLAFTAIQNSSTIDCEVRFLTKTLKMGTHTVTETLNEFRRMALVKFIPNKGRGNKRFIELVKEGK*
Ga0105094_104363312	3300009153	Freshwater Sediment	MNAQKESFEFDFNTLYRLETTKRPSTSIAVYAELLATMAIQNSSTIDCETRFLTTTLKLGTHTLIETLNEFRRMGLVRLIPIKGRGH
Ga0105102_101336043	3300009165	Freshwater Sediment	MNAQKESFRFDLNTLYRLEKTKRPGASIAVYAELLAAMMIQGGNTIDCEVRFLSQTLKMGTHTVTESLNEFRRMGLVRFIPIKAKGHKRLIELVKEG*
Ga0113563_105784681	3300009167	Freshwater Wetlands	MNAQKESFELDLNTLYRLERTKRPGASIAVYAELLASMSIQSSSKVDCEVRLLSKTLKIGTHIVTETLNEFRRMGLVRFIPIKGRGKKRFIELIKVGDFSGS*
Ga0113563_107136342	3300009167	Freshwater Wetlands	MNAQKESFAFELNTFYRLEKTKRPTTSIAVYAELLASMAIQNSTTIDCGVRFLSESLKMGTHTVTETLNEFRRMGLVKFIPRKGGRNKRFIEMINVGE*
Ga0113563_107214982	3300009167	Freshwater Wetlands	MNPQKESFAFELDTFYRLERTKRPCVSIALYAELLASMSIQSSPKLDCEVRFLSKTLKIGTHTAAETLNEFRGMGLVGFISTKGRGRKRFIELISEGK*
Ga0113563_108160462	3300009167	Freshwater Wetlands	MNAQKESFVFDLNTLYRLEKAKRPSTSIAVYAELLASMATQNSSTIDCDVRFLSQTLKMGTHTVTETLNEFGRMGLVRFIPIKGKGHKRFIELI
Ga0113563_108750432	3300009167	Freshwater Wetlands	MNTQKESFEFDLNTLFRLERTKRPSTSIAVYAELLAAVAIKNSPTIDCQVRFLCQTLKMGTHTVTETLNEFRRMGLVRFIPVKGRGHQRFIEMITAGK*
Ga0113563_109483182	3300009167	Freshwater Wetlands	MNSQKESFAFDLNTFYRLERTKRPSTSIAVYAELLASMAIQNSATIDCEVRFLTKTLKMGTHTLIETLKEFRRMGLLKFIPIKGRGHKRSIEIIHEGK*
Ga0113563_111565381	3300009167	Freshwater Wetlands	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLAAMTIQNTQTIDCEVRFLSKTLKIGAHTVTETLNEFRKMGFVRFIPGKGGRNKRFIEMIKEGK*
Ga0113563_124825512	3300009167	Freshwater Wetlands	LNTLYRLESTKRPSTSIAVYAELRASMAIQKSPTIDCDVRFLCQTLRMGTHTVTETLEEFRRMGLVRFIPIKGMGHKRLIELISEGK*
Ga0105097_100318221	3300009169	Freshwater Sediment	VAGQFCRDGLQPRKPLRGDLMNAQKESFEFDFNTLYRLETTKRPSTSIAVYAELLATMAIQNSSTIDCETRFLTTTLKLGTHTLIETLNEFRRMGL
Ga0105097_101639762	3300009169	Freshwater Sediment	MGDRMNAQKEAFEVDLNTFYRLERTKRPITSIAVYAELLASMAIQNSPTINCEVRFLSKTLKIGTHTVTETLNEFRKMELVRFIPIKGKGHKRYIELINAGK*
Ga0105097_102735853	3300009169	Freshwater Sediment	MNAQKESFRFDLNTLYRLEKTKRPGASIAVYAELLAAMMIQGGNTIDCEVRFLSQTLKMGTHTVTESLNEFRRMGLVRLIPI
Ga0105101_100179981	3300009171	Freshwater Sediment	VAGQFCRDGLQPRKPLRGDLMNAQKESFEFDFNTLYRLETTKRPSTSIAVYAELLATMAIQNSSTIDCETRFLTTTLKLGTHTLIETLNEFRRMGLVRLIPIKGRGHKRLIELISAGN*
Ga0105101_100585062	3300009171	Freshwater Sediment	VNAQKESFEFALNTFYRLETTKRPSTSIAVYAELLDSMAIQNSPTIECEVRFLCQTLKMGTHTVTETLNEFRRMGLVKFIPIKGAGQKRLIELIKEGK*
Ga0105101_106787271	3300009171	Freshwater Sediment	MNAQKTSLEFDLNTLYRLEKTKRPSTSIAVYAELLASMAIQNSSTIDCEVRFLCETLKMGTHIVVETLNELRRMGLVSFIPIKGRGHKRSIEMIREGRLSRG*
Ga0115028_102357961	3300009179	Wetland	MRSDLMNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFVRSKGRGQKRFIELRNVGK*
Ga0256802_10426671	3300026492	Sediment	MNAQKEAFAVDLNTFYRLERTKRPSASIAVYAELLASMATQNGSTIDCEVRFLCNTLKMGTHIVVETLNELRRMGLVRFIPMKGRGHERFIEMIHEGK
Ga0209164_12585631	3300027690	Enrichment Culture	RGDLMNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLTSMAIQNSTRIDCEVRFLCERLKMGTHTVTETLNDFTRMGLVKFIPIKGRGNKRSIELIDEER
Ga0209286_10894432	3300027713	Freshwater Sediment	MNAQKESFEFDFNTLYRLETTKRPSTSIAVYAELLATMAIQNSSTIDCETRFLTTTLKLGTHTLIETLNEFRRMGLVRLIPIKGRGHKRLIELISAGN
Ga0208665_100349912	3300027715	Deep Subsurface	MNAQEKSFEFDLNTFYRLERTKRPSTSIAVYAELLASMTIQNSSTIDCEVRFLSESLKMGTHTVTETLTEFRRMGLVRFIPIKGRGRKRFIELIKVGG
Ga0208665_101803062	3300027715	Deep Subsurface	MNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGRKRFVELRNVGK
Ga0209293_100394231	3300027877	Wetland	MNAQKESFAFELDTFYRLETTKRPSTSIAIYAELLAFMAIQGNSTVDCEVRSLSRTLKIGTHTVTETLYELWKMGLVRFIASKGRGHKRFIELINAGR
Ga0208980_100445844	3300027887	Wetland	MNAQKESFAFELDTLYRLEKAKRPSTSIAVYAELLAFTAIQNSSTIDCEVRFLCQTLKMGTHTVTETLNEFRRMGLVKFIPIKGRGKTRSIELVHEGK
Ga0208980_101328892	3300027887	Wetland	MNAQRESFEFDLNTLYRLERTKRPSTSIAVYAELLASMAIQNSSTIDCEVRFLSNTLKMGTHTVAETLNEFRRMGLAKFIPIKETGHKRFIELIHGGQ
Ga0208980_103566582	3300027887	Wetland	MNAQKESFEFNLNTLYRLEKTKRSSTSIAVYAELLACMTIQNSAKIDCGVRFLSESLKMGTHTVTETLNELWRMRLVKFIPIKGKRNRRSIELIKVASGGLLDKGFY
Ga0208980_103979461	3300027887	Wetland	MDAQRDTFEFDLNTLYRLESTKRPSASIAVYAEMLATMVIQNSSTIDCDVRFLCQNLKVGTHTVTETLNEFRKMGLVRFIPGKGRGHKRFIEMIK
Ga0208980_108256112	3300027887	Wetland	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLAAMTIQNSATLDADVRFLTKTLKIGNKTLAETLNEFTRMGLVRFIPGKRRGNKRLVELMHEGK
Ga0209254_102000172	3300027897	Freshwater Lake Sediment	MDAQKELFEFELNTFYRLKRTKRPGASIAIYAELLASMAIQNSSTINCEVRFLSKTLKMGTHTVTETLNEFRRMGLVKFIPIKGRGNC
Ga0315297_104288831	3300031873	Sediment	MNAQKESFEFELDTFYRLERTKRPSTSIALYAELLASMAIQNSTTINCEVRFLSKTLKMGTHTVTETLNEFRRMGLVKFIPSKGRGNKRFIELIHAGK
Ga0315276_105802722	3300032177	Sediment	FMNAQKESFEFDLNTFYRLERTKRPGTSIAVYAELLASMTIQNSPTVDCEVRFLSKALKMGTHTVTETLTEFRRMGLVKFIPSKGRGHKRFIELIHAGK
Ga0315286_102315501	3300032342	Sediment	MNAQKESFEVDLNTFYRLERTKRPGTSIAVYAELLASMTIQNSPTVDCEVRFLSKALKMGTHTVTETLTEFRRMGLVKFIPSKGRGHKRFIELIHAGK
Ga0315275_123669242	3300032401	Sediment	MNAQKEPFEFELDTFYRLERTKRPSTSIALYAELLASMAIQNSTTINCEVRFLSKTLKMGTHTVTETLNEFRRMGLVKFIPSKGRGNKRFIELIHAGK
Ga0316605_120489001	3300033408	Soil	MNAQKEIFEFDLNTFYRLERTKRPSTSIAVYAELLAAMTIQNSSTIDCGVRFLSESLKMGTHTVTETLNEFRRMGLVRFIPIKGRGKKRFIELIKEGNSVVVALGLKAYI
Ga0316605_121023231	3300033408	Soil	MRSIPMNAQKESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGRKRFVELRNVGK
Ga0316603_102455493	3300033413	Soil	MNAQKESFVFDLNTLYRLEKAKRPSTSIAVYAELLASMAIQKSPTIDCDVRFLCQTLRMGTHTVTETLEEFRRMGLVKFIPTKGRGHKRFIEMINVGE
Ga0316603_107264462	3300033413	Soil	PQKESFAFELDTFYRLERTKRPCVSIALYAELLASMSIQSSPKLDCEVRFLSKTLKIGTHTAAETLNEFRGMGLVGFISTKGRGRKRFIELISEGK
Ga0316619_102817303	3300033414	Soil	MNAQKESFELDLNTLYRLERTKRPGASIAVYAELLASMSIQSSSKVDCEVRLLSKTLKIGTHIVTETLNEFRRMGLVRFIPIKGRGKKRFIELIKVGDFSGS
Ga0316619_107690931	3300033414	Soil	MNAQEKSFEFDLNTFYRLERTRRPSTSIAVYAELLASAAIQNNSTIDCGVRFLSESLKMGTHTVTGTLEELRRMGLVRFIPIKGRGNKRFIEMIHEGK
Ga0316622_1001603931	3300033416	Soil	MNAQRESFEFDLNTFYRLEKTKRPSTSIAVYAELLASMAIHNSSTIDCEVRFLCQTLKMGTHTVTETLNEFRRMGLVRFISTKGRGKSRLIQLVTGS
Ga0316622_1002704481	3300033416	Soil	MNAQKESFAFDLNTFYRLERTKRPSTSIAVYAELLASAAIQNNSTIDCGVRFLSESLKMGTHTVTGTLEELRRMGLVRFIPIKGRGNKRFIEMIHEGK
Ga0316622_1029155181	3300033416	Soil	MNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGQKRLIELRNVGK
Ga0316625_1014767151	3300033418	Soil	MNSQKESFAFDLNTFYRLERTKRPSTSIAVYAELLASAAIQNNSTIDCGVRFLSESLKMGTHTVTETLTEFRRMGLVRSIPIKGRGRKRFIELIKVGG
Ga0316601_1001679881	3300033419	Soil	MNAQKESFAFELNTFYRLEKTKRPTTSIAVYAELLASMAIQNSTTIDCGVRFLSESLKMGTHTVTETLNEFRRMGLVKFIPRKGGRNKRFIEMINVGE
Ga0316601_1010430632	3300033419	Soil	MNAQKESFELDLNTLYRLERTKRPGASIAVYAELLASMSIQSSSKVDCEVRLLSKTLKIGTHIVTETLNEFRRMGLVRFIPIKGRGKKRFIELIKVGDF
Ga0316601_1012879252	3300033419	Soil	DHMNAQKESFEFDLNTFYRLEKAKRPSTSIAVYAELLASMATQNSSTIDCDVRFLSQTLKMGTHTVTETLNEFRRMRLVRFIPIKGRGHKRFIELVDGGR
Ga0316601_1021779491	3300033419	Soil	MNAQKEIFEFDLNTFYRLERTKRPSTSIAVYAELLAAMTIQNSSTIDCGVRFLCQTLQMGTHTVTDTLNEFRRMGLVRFIPIKGRGKKRFIELIKEGNSVVVALGLKAYIQRKF
Ga0316613_105611321	3300033434	Soil	MNAQKESFAFELDTFYRLETTKRPSTSIAIYAELLAFMAIQSNSTVDCEVRFLSRTLKIGTHTVTETLYELWKMGLVRFIASKGRGHKRFIELINAGR
Ga0316620_105790042	3300033480	Soil	MNAQEKSFEFDLNTFYRLERTKRPSTSIAVYAELLASMTIQNSSTIDCEVRFLSESLKMGTHTVTETLTEFRRMGLVRFIPIKGRGRKRFIELIKVG
Ga0316600_108346622	3300033481	Soil	MNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGRKRF
Ga0316627_1022056661	3300033482	Soil	MPVQKESFEFDLNTFYRLERTKRPSISIAVYAELLAAMTIQNSTTVDCEVRFLSKTLKMGTHTVIETLNELRRMGLVRFIPGKGGRNKRLIELVSAGR
Ga0316626_109035181	3300033485	Soil	MNAQRESFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIQNSSTIDCEVRFLCNSLKMGTHTVTETLDEFRRMGLVRFIPIKGRGHKRFIELVHERK
Ga0316624_109548522	3300033486	Soil	MNTQKESFEFDLNTLFRLERTKRPSTSIAVYAELLAAVAIQNSPTIDCQVRFLCQTLKMGTHTVTETLDEFKKMGLVRFIPIKGRDHKRFIEMIHKGK
Ga0316624_119915991	3300033486	Soil	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIQNSPTIDCEVRFLSRTLRMGTHAVSETLNEFRRMRLVKFIPIKGRGHKRSIEMISEEK
Ga0316630_122937581	3300033487	Soil	ESFAFELDTFYRLERTRRTSTSIAVYAELLASAAIQNNSTIDCGVRFLSESLKMGTHTVTGTLEELRRMGLVRFIPIKGRGNKRFIEMIHEGK
Ga0316621_101762592	3300033488	Soil	MNAQRESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGR
Ga0316628_1009254402	3300033513	Soil	MNAQKESFEFELNTFYRLERAKRPSTSIAVYAELLASMAIQNSATIDCEVRFLSKTLQMGTHTVTETLNEFRRMGLVRFIPIKGRGHKRSIELINAGK
Ga0316628_1023373532	3300033513	Soil	NALKESFRFDLNTLYRLEKAKRPGASIAVYAELLASMTIQGSRTIDCEVRFLSQTLKMGTHTVLETLQELRRMGLLRFIPVKGRGHSRLIELIHEG
Ga0316628_1026783892	3300033513	Soil	MNAQKESFVFDLNTLYRLEKAKRPSTSIAVYAELLASMATQNSSTIDCDVRFLSQTLKMGTHTVTETLNEFRKIGLVRFIPIK
Ga0316628_1027551531	3300033513	Soil	MNAQKESFEFDLNTFYRLERTKRPSTSIAVYAELLASMAIQNSPTIDCEVRFLSRTLRMGTHAVSETLNEFRRMGLVKFIPIKGRGHKRSIEMISEEK
Ga0316616_1005050502	3300033521	Soil	ESFEFDLDTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGRKRFVELRNVGK
Ga0316616_1009285742	3300033521	Soil	MNAQKESFAFELDTFYRLERTKRPSSSIAIYAELLASMTIQNSPTIDCEARFLSKTLKMGTHTVTETLEEFRRMGLIKFIPTKGRGHKRFIEMINVGE
Ga0316616_1009731992	3300033521	Soil	MNAQKQCFEFELDVFYRLEKTKRPSISIAVYAEMLAVMTIQNSSTIDCEVRFFCSTLKMGTHTVTETLDELRRMGLIRFIPVKGKAHKRFIELISEWK
Ga0316616_1010246502	3300033521	Soil	MNAQKESFAFGLDTFYRLERTKRPSTSIAVYAELLASMAIHNSSTADCDVRFLSKTLKMGTHTVTETLNEFRRMGLVKFIPIKGKG
Ga0316616_1029613892	3300033521	Soil	MNTQKESFEFDLNTLFRLERTKRPSTSIAVYAELLAAVAIQNSPTIDCQVRFLCQTLKMGAHTVTETLEEFRRMGLVRFIPTKGKGHKRFIELSNAGD
Ga0316616_1037090241	3300033521	Soil	MNAQRESFEFDLNTFYRLEKTKRPSTSIAVYAELLASMAIHNSSTIDFEVRFLCQTLKMGTHTVTETLNEFRRMGLVRFIPVKGRGHQRFIEMITAGK
Ga0316616_1041145401	3300033521	Soil	MNAQKESFEFNLNAFYRLERTKRPSTSIAVYAELLASATIQNSTTVDCEVRFLSKTLKIGAHTVTETFNEFRRMGLVRFIP
Ga0316617_1000131831	3300033557	Soil	MNSQKESFAFDLNTFYRLERTKRPSTSIAVYAELLASMAIQNSATIDCEVRFLTKTLKMGTHTLIETLKEFRRMGLLKFIPIKGRGHKRSIEIIHEGK
Ga0316617_1000369332	3300033557	Soil	MNAQKESFEFHLNTFYRLEKTKRPSTSIAVYAELLASVAIQNSSTIDCGVRFLSATLKMGTHTVTETLNEFRKMGLVRFIRSKGRGRKRFVELRNVGK
Ga0316617_1000874831	3300033557	Soil	MNAQKESFVFDLNTLYRLEKAKRPSTSIAVYAELLASMATQNSSTIDCDVRFLSQTLKMGTHTVTETLNEFRRMRLVRFIPIKGRGHKRFIELVDGGR
Ga0316617_1014157151	3300033557	Soil	MNPQKESFAFELDTFYRLERTKRPCVSIALYAELLASMSIQSSPKLDCEVRFLSKTLKIGTHTAAETLNEFRGMGLVGFISTKGRGRKRFIE
Ga0316617_1018129161	3300033557	Soil	MNAQKESFEVDLNTFYRLERTKRPSTSIAVYAELLASMAIQNSPKIDCEVRFLCQTLKMGTHTVTETLNEFKRMGFVKFIPIKGRGNKRFIELVDGGR
Ga0316617_1024310891	3300033557	Soil	MNTQKESFEFDLNTLFRLERTKRPSTSIAVYAALLAAVAIQDSPTIDCQVRFLCQTLKMGTHTVTETLKEFRRMGLIRFIPTKGKGHKRFIELSNAG
Ga0316617_1026509361	3300033557	Soil	MNAQKESFAFELNTFYRLEKTKRPTTSIAVYAELLASMAIQNSTTIDCGVRFLSESLKMGTHTVTETLNEFRRMGLVKFIPRKGGRNKRFIEMIN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F092313

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences