Metagenome / Metatranscriptome Family F091804

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091804
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	44 residues
Representative Sequence	DAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Number of Associated Samples	87
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.46 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.41

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (91.589 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (16.822 % of family members)
Environment Ontology (ENVO)	Unclassified (33.645 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (63.551 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.17% β-sheet: 0.00% Coil/Unstructured: 70.83%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.41
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.41
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF12787	EcsC	8.41
PF04679	DNA_ligase_A_C	7.48
PF05974	DUF892	4.67
PF01068	DNA_ligase_A_M	4.67
PF07995	GSDH	3.74
PF03401	TctC	1.87
PF05532	CsbD	1.87
PF09933	DUF2165	1.87
PF01408	GFO_IDH_MocA	1.87
PF06823	DUF1236	1.87
PF11752	DUF3309	0.93
PF04343	DUF488	0.93
PF04226	Transgly_assoc	0.93
PF11003	DUF2842	0.93
PF03358	FMN_red	0.93
PF02738	MoCoBD_1	0.93
PF00590	TP_methylase	0.93
PF00723	Glyco_hydro_15	0.93
PF12833	HTH_18	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	12.15
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	4.67
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	4.67
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	3.74
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.87
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.87
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.93
COG3189	Uncharacterized conserved protein YeaO, DUF488 family	Function unknown [S]	0.93
COG3387	Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family	Carbohydrate transport and metabolism [G]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.59 %
Unclassified	root	N/A	8.41 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.59 %
Unclassified	root	N/A	8.41 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.59 %
Unclassified	root	N/A	8.41 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	71.96 %
Unclassified	root	N/A	8.41 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	50.47 %
Unclassified	root	N/A	8.41 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.80 %
Gemmatimonadetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes	0.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	15.89 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9.35 %
Unclassified	root	N/A	8.41 %
Acidiferrobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales	1.87 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.87 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.93 %
Gemmatimonadetes	class	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.89 %
Unclassified	root	N/A	8.41 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.61 %
Acidiferrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae	1.87 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.93 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	0.93 %
Gemmatimonadales	order	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.89 %
Unclassified	root	N/A	8.41 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.80 %
Acidiferrobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter	1.87 %
unclassified Gemmatimonadales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales	0.93 %
Rhodanobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter	0.93 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.89 %
Unclassified	root	N/A	8.41 %
Acidiferrobacter thiooxydans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	1.87 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
unclassified Rhodanobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter	0.93 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	15.89 %
Unclassified	root	N/A	8.41 %
Acidiferrobacter thiooxydans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	1.87 %
Rhodanobacter sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter → Rhodanobacter sp.	0.93 %
Gemmatimonadales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	0.93 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.93 %
Rhodospirillales bacterium URHD0088	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig103559	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1026596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1078	Open in IMG/M
3300000893\|AP72_2010_repI_A001DRAFT_1036554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300000956\|JGI10216J12902_111897769	Not Available	635	Open in IMG/M
3300005104\|Ga0066818_1013802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	622	Open in IMG/M
3300005172\|Ga0066683_10103150	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1732	Open in IMG/M
3300005178\|Ga0066688_10953391	All Organisms → cellular organisms → Bacteria	526	Open in IMG/M
3300005332\|Ga0066388_100548087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1786	Open in IMG/M
3300005332\|Ga0066388_101056764	All Organisms → cellular organisms → Bacteria → Proteobacteria	1368	Open in IMG/M
3300005332\|Ga0066388_101577773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1153	Open in IMG/M
3300005332\|Ga0066388_102310428	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	973	Open in IMG/M
3300005332\|Ga0066388_103421995	All Organisms → cellular organisms → Bacteria → Proteobacteria	810	Open in IMG/M
3300005363\|Ga0008090_10002269	All Organisms → cellular organisms → Bacteria	1763	Open in IMG/M
3300005445\|Ga0070708_100637072	All Organisms → cellular organisms → Bacteria → Proteobacteria	1005	Open in IMG/M
3300005553\|Ga0066695_10175944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	1338	Open in IMG/M
3300005554\|Ga0066661_10923054	All Organisms → cellular organisms → Bacteria	510	Open in IMG/M
3300005713\|Ga0066905_100399296	All Organisms → cellular organisms → Bacteria → Proteobacteria	1114	Open in IMG/M
3300005713\|Ga0066905_101113869	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	702	Open in IMG/M
3300005764\|Ga0066903_105146844	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	692	Open in IMG/M
3300005764\|Ga0066903_106798556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	594	Open in IMG/M
3300005764\|Ga0066903_107721018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	554	Open in IMG/M
3300006046\|Ga0066652_100879322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300006755\|Ga0079222_11907272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	580	Open in IMG/M
3300006797\|Ga0066659_10018644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3921	Open in IMG/M
3300006854\|Ga0075425_102517866	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300006880\|Ga0075429_100482473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1086	Open in IMG/M
3300006914\|Ga0075436_100194407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1436	Open in IMG/M
3300006914\|Ga0075436_101005541	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300006953\|Ga0074063_13032900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	674	Open in IMG/M
3300007076\|Ga0075435_101441100	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	604	Open in IMG/M
3300009011\|Ga0105251_10216215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	863	Open in IMG/M
3300009100\|Ga0075418_10713763	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300009137\|Ga0066709_102955326	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	625	Open in IMG/M
3300009137\|Ga0066709_103114102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium URHD0088	606	Open in IMG/M
3300009174\|Ga0105241_12607019	All Organisms → cellular organisms → Bacteria → Proteobacteria	508	Open in IMG/M
3300009553\|Ga0105249_10272994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1685	Open in IMG/M
3300010046\|Ga0126384_11886611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	569	Open in IMG/M
3300010048\|Ga0126373_10748202	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300010048\|Ga0126373_10889420	Not Available	954	Open in IMG/M
3300010333\|Ga0134080_10700083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	502	Open in IMG/M
3300010359\|Ga0126376_12608863	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300010360\|Ga0126372_11081020	Not Available	819	Open in IMG/M
3300010361\|Ga0126378_12259525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	621	Open in IMG/M
3300010362\|Ga0126377_11534899	All Organisms → cellular organisms → Bacteria	740	Open in IMG/M
3300010362\|Ga0126377_13261765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	524	Open in IMG/M
3300010366\|Ga0126379_10722147	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300010371\|Ga0134125_12884901	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300010376\|Ga0126381_104508301	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	538	Open in IMG/M
3300010397\|Ga0134124_12282893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	581	Open in IMG/M
3300010398\|Ga0126383_10187370	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1973	Open in IMG/M
3300010398\|Ga0126383_13650134	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	503	Open in IMG/M
3300012022\|Ga0120191_10033681	Not Available	812	Open in IMG/M
3300012199\|Ga0137383_10859354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rhodanobacter → unclassified Rhodanobacter → Rhodanobacter sp.	662	Open in IMG/M
3300012207\|Ga0137381_11062341	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	697	Open in IMG/M
3300012361\|Ga0137360_10407724	All Organisms → cellular organisms → Bacteria → Proteobacteria	1146	Open in IMG/M
3300012469\|Ga0150984_110668867	All Organisms → cellular organisms → Bacteria → Proteobacteria	510	Open in IMG/M
3300012971\|Ga0126369_10181510	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2011	Open in IMG/M
3300014968\|Ga0157379_11103959	All Organisms → cellular organisms → Bacteria → Proteobacteria	760	Open in IMG/M
3300015077\|Ga0173483_10160366	All Organisms → cellular organisms → Bacteria → Proteobacteria	1001	Open in IMG/M
3300015373\|Ga0132257_103669786	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	559	Open in IMG/M
3300016294\|Ga0182041_11259011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	676	Open in IMG/M
3300016294\|Ga0182041_11798823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	568	Open in IMG/M
3300016294\|Ga0182041_11881496	Not Available	556	Open in IMG/M
3300016371\|Ga0182034_11010785	All Organisms → cellular organisms → Bacteria	718	Open in IMG/M
3300018034\|Ga0187863_10618380	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300018051\|Ga0184620_10143506	All Organisms → cellular organisms → Bacteria	768	Open in IMG/M
3300018058\|Ga0187766_11291156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	532	Open in IMG/M
3300019356\|Ga0173481_10138595	All Organisms → cellular organisms → Bacteria → Proteobacteria	989	Open in IMG/M
3300021168\|Ga0210406_10183546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1742	Open in IMG/M
3300021168\|Ga0210406_10867949	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Acidiferrobacterales → Acidiferrobacteraceae → Acidiferrobacter → Acidiferrobacter thiooxydans	681	Open in IMG/M
3300021168\|Ga0210406_10989268	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300021178\|Ga0210408_10277742	All Organisms → cellular organisms → Bacteria → Proteobacteria	1335	Open in IMG/M
3300021560\|Ga0126371_10094278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2967	Open in IMG/M
3300021560\|Ga0126371_10853904	Not Available	1055	Open in IMG/M
3300021560\|Ga0126371_13733907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	513	Open in IMG/M
3300025909\|Ga0207705_10356258	All Organisms → cellular organisms → Bacteria → Proteobacteria	1128	Open in IMG/M
3300025910\|Ga0207684_10030002	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4629	Open in IMG/M
3300025910\|Ga0207684_10308000	All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → unclassified Gemmatimonadales → Gemmatimonadales bacterium	1365	Open in IMG/M
3300025910\|Ga0207684_11519254	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	544	Open in IMG/M
3300025915\|Ga0207693_10986638	All Organisms → cellular organisms → Bacteria	644	Open in IMG/M
3300025928\|Ga0207700_10077424	All Organisms → cellular organisms → Bacteria → Proteobacteria	2583	Open in IMG/M
3300026322\|Ga0209687_1253771	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	546	Open in IMG/M
3300026360\|Ga0257173_1057692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	559	Open in IMG/M
3300026361\|Ga0257176_1063744	All Organisms → cellular organisms → Bacteria	590	Open in IMG/M
3300026528\|Ga0209378_1182568	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300026551\|Ga0209648_10212273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1466	Open in IMG/M
3300027646\|Ga0209466_1089301	Not Available	623	Open in IMG/M
3300028536\|Ga0137415_10700238	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	826	Open in IMG/M
3300028778\|Ga0307288_10134125	All Organisms → cellular organisms → Bacteria → Proteobacteria	923	Open in IMG/M
3300028809\|Ga0247824_10190970	All Organisms → cellular organisms → Bacteria → Proteobacteria	1117	Open in IMG/M
3300028824\|Ga0307310_10125293	All Organisms → cellular organisms → Bacteria → Proteobacteria	1166	Open in IMG/M
3300031231\|Ga0170824_111532073	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300031719\|Ga0306917_10265575	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1318	Open in IMG/M
3300031744\|Ga0306918_11404969	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031748\|Ga0318492_10018813	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2971	Open in IMG/M
3300031764\|Ga0318535_10095157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1300	Open in IMG/M
3300031765\|Ga0318554_10387686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	793	Open in IMG/M
3300031778\|Ga0318498_10092913	Not Available	1365	Open in IMG/M
3300031782\|Ga0318552_10521513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	606	Open in IMG/M
3300031793\|Ga0318548_10311291	Not Available	774	Open in IMG/M
3300031799\|Ga0318565_10153887	All Organisms → cellular organisms → Bacteria → Proteobacteria	1115	Open in IMG/M
3300031833\|Ga0310917_10014546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4400	Open in IMG/M
3300031835\|Ga0318517_10322255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	698	Open in IMG/M
3300031897\|Ga0318520_10338378	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	912	Open in IMG/M
3300031947\|Ga0310909_10507806	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M
3300032060\|Ga0318505_10147492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1089	Open in IMG/M
3300032180\|Ga0307471_104279182	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.85%
Host-Associated	Host-Associated	12.15%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.98%
Plants	Host-Associated → Plants	12.15%
Aquatic	Environmental → Aquatic	1.87%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.98%
Rhizosphere	Host-Associated → Plants → Rhizosphere	11.21%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Sediment	Environmental → Aquatic → Sediment	0.93%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.16%
Loam	Environmental → Terrestrial → Soil → Loam	15.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.35%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.87%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.04%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	26.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	12.15%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.35%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.87%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.93%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.82%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.95%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.35%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.61%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	5.61%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.74%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	3.74%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.80%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.80%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.87%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.87%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.87%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.93%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000893	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A001	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300005104	Soil and rhizosphere microbial communities from Laval, Canada - mgHAC	Environmental	Open in IMG/M
3300005172	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_132	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005553	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006953	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026322	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136 (SPAdes)	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026528	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_156 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027646	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 30 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028778	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_142	Environmental	Open in IMG/M
3300028809	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day48	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_08674890	2124908045	Soil	DVGDAPRHEIEIRGRVERLVVRTFARARDLPERAAGKKVERVAAE
AF_2010_repII_A100DRAFT_10265962	3300000655	Forest Soil	PRHEIEIRGRVERLIVRTFARARDLPVLQDGVKXKRARVAAE*
AP72_2010_repI_A001DRAFT_10365541	3300000893	Forest Soil	APRHEIEIRGRVERLVVRTFARARDLPVLERGGRKKLARVAAE*
JGI10216J12902_1118977691	3300000956	Soil	GRVERLVVRTFASAQDLPITPRGAAKKMAQVPAE*
Ga0066818_10138022	3300005104	Soil	LVISEAVMLRAGIDLGAAQRHEIEIRGRVERLVVRTFASARDLPVLESGKRKRA*
Ga0066683_101031503	3300005172	Soil	DLGDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEVVAAQ*
Ga0066688_109533912	3300005178	Soil	APRHEIEIRGRVERLVVRAFASARELPVLQRGTAKRAARVAAE*
Ga0066388_1005480873	3300005332	Tropical Forest Soil	APRHEIEIRGRVERLVVRTFARARDLPVLQSGVKKKMARAAAE*
Ga0066388_1010567643	3300005332	Tropical Forest Soil	AGIELGDAPRHEIEIRGRVERLVVRTFARARDLPVLERGGRKKRASVAAE*
Ga0066388_1015777731	3300005332	Tropical Forest Soil	RHEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKVQSVAAE*
Ga0066388_1023104282	3300005332	Tropical Forest Soil	AGIDLGDAPRHEIEIRGRVERLVVRTFTSARDLPMLERRARRKAASVAAV*
Ga0066388_1034219951	3300005332	Tropical Forest Soil	RHEIEIRGRVERLVVRTFASARDLPVVERGGRKKLASVAAE*
Ga0008090_100022693	3300005363	Tropical Rainforest Soil	DLGDAPRHEIEIRGRVERLVVRTFARARDLPMPPRGAAKKMERAAAL*
Ga0070708_1006370721	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	PRHEIEIRGRVERLVVRTFASARDLPVLERRGRKTVASVAAA*
Ga0066695_101759442	3300005553	Soil	HEIEIRGRVEGLVVRTFTRARDLPVLGHGALKKVQSVAAE*
Ga0066661_109230541	3300005554	Soil	IEIRGRVEGLVVRTFTSARDLPVLGRGALKKVLAAE*
Ga0066905_1003992961	3300005713	Tropical Forest Soil	GDAPRHEIEIRGRVERLVVRTFARARDLPELAAAKKVHRVAAE*
Ga0066905_1011138691	3300005713	Tropical Forest Soil	APRHEIEIRGRVERLVVRTFERARDLPVPPRGAQKKRERAAAV*
Ga0066903_1051468441	3300005764	Tropical Forest Soil	LGDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKVEATAAQ*
Ga0066903_1067985562	3300005764	Tropical Forest Soil	HEIEIRGRVERLVVRTFTSARDLPMLERRGRKKAASVAAV*
Ga0066903_1077210182	3300005764	Tropical Forest Soil	RHEIEIRGRVERLVVRTFASAQDLPITPRGTAKKAERAPAA*
Ga0066652_1008793222	3300006046	Soil	RHEIEIRGRVERLVVRTFASARDLPALQRTGAKKVERAAAG*
Ga0079222_119072722	3300006755	Agricultural Soil	GRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ*
Ga0066659_100186446	3300006797	Soil	GIDLGDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEVVAAQ*
Ga0075425_1025178661	3300006854	Populus Rhizosphere	RGRVERLVVRTFARARDLPVPPRGAPKKMQRAAAV*
Ga0075429_1004824731	3300006880	Populus Rhizosphere	PRHEIEIRGRVERLVVRTFARASDLPERAAAKKVERVTAE*
Ga0075436_1001944071	3300006914	Populus Rhizosphere	IEIRGRIERLVVRTFARARDLPVPARGAAKKVERAAAV*
Ga0075436_1010055411	3300006914	Populus Rhizosphere	LGDAPSHEIEIRGRVERLVVRTFARARDLPVPPRGAPKKMQRAAAV*
Ga0074063_130329002	3300006953	Soil	HEIEIRGRVERLVVRTFTSARDLPVLERERRKRA*
Ga0075435_1014411001	3300007076	Populus Rhizosphere	PRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEVVAAQ*
Ga0105251_102162152	3300009011	Switchgrass Rhizosphere	RAGIDLGAAPRHEIEIRGRVERLVVRTFATARDLPVLESGKRKRA*
Ga0075418_107137632	3300009100	Populus Rhizosphere	APRHEIEIRGRVERLVVRTFARASDLPERAAAKKVERVTAG*
Ga0066709_1029553262	3300009137	Grasslands Soil	SDAVALRAGIDLGAAPRHEIEIRGRVERLVVRAFASARDLPVLQHGTAKRAARVAAE*
Ga0066709_1031141021	3300009137	Grasslands Soil	SDAVALRAGIDLGAAPRHEIEIRGRVERLVVRAFASARDLPVLQRGTAKRAARVAAE*
Ga0105241_126070191	3300009174	Corn Rhizosphere	APRHEIEIRGRVERLVVRTFATARDLPVLEPGKRKRA*
Ga0105249_102729943	3300009553	Switchgrass Rhizosphere	GIDLGAAPRHEIEIRGRVERLVVRTFATARDLPVLESGKRKRA*
Ga0126384_118866111	3300010046	Tropical Forest Soil	ALRAGIELGDAPRHEIEIRGRVERLVVRTFARARDLPVLERRGRKKLASVAAV*
Ga0126373_107482023	3300010048	Tropical Forest Soil	DLGDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKVEATAAQ*
Ga0126373_108894202	3300010048	Tropical Forest Soil	IEIRGRVERLVVRTFASARDLPVPERRGRKKVERVAAQ*
Ga0134080_107000832	3300010333	Grasslands Soil	LGAAPRHEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKVQSVAAE*
Ga0126376_126088631	3300010359	Tropical Forest Soil	IRGRVERLVVRTFARARDLPAPPRGAARKMERTAAL*
Ga0126372_110810201	3300010360	Tropical Forest Soil	RHEIEIRGRLERLVVRTFARARDLPILERRGRKKAESVAAV*
Ga0126378_122595251	3300010361	Tropical Forest Soil	GDAPRHEIEIRGRVERLVVRTFKSARDLPVLERRGRKKAASVAAV*
Ga0126377_115348992	3300010362	Tropical Forest Soil	DAPRHEIEIRGRVERLVVRTFARARDLPVLERRGRKKLASVAAE*
Ga0126377_132617652	3300010362	Tropical Forest Soil	ISEAVALGAGIELGDAPRHEIEIRGRVERLVVRTFARARDLPVLERGGRKKRASVAAE*
Ga0126379_107221473	3300010366	Tropical Forest Soil	GDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKVEATAAQ*
Ga0134125_128849011	3300010371	Terrestrial Soil	APRHEIEIRGRVERLVVRTVATARDLPVLERGRRRERA*
Ga0126381_1045083011	3300010376	Tropical Forest Soil	LVISEAVALRAGIDLGDAPSHEIEIRGRVERLVVRTFTSARDLSIPERRGRKKVASVAAV
Ga0134124_122828931	3300010397	Terrestrial Soil	AFPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEVVAAQ*
Ga0126383_101873703	3300010398	Tropical Forest Soil	GIELGDAPRHEIEIRGRVERLVVRTFARARDLPVLERGGRKKLARVAAE*
Ga0126383_136501341	3300010398	Tropical Forest Soil	DAPRHEIEIRGRVERLVVRTFVSARDLPVLERRGRKKVEAAAAQ*
Ga0120191_100336813	3300012022	Terrestrial	DLGDAPRHEIEIRGRVERLVVRTFARARDLPERAAAKKVERVAAE*
Ga0137383_108593541	3300012199	Vadose Zone Soil	VDLGAAARHEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKIQSVTAE*
Ga0137381_110623411	3300012207	Vadose Zone Soil	IRGRVERLVVRAFASARELPVLQRGTAKRAARVAAE*
Ga0137360_104077242	3300012361	Vadose Zone Soil	GRVERLVVRTFASARDLPVLGRGGLKKVESVAAD*
Ga0150984_1106688672	3300012469	Avena Fatua Rhizosphere	APRHEIEIRGRVERLVVRTFATARDLPVPESGKRKRA*
Ga0126369_101815103	3300012971	Tropical Forest Soil	LGDAPRHEIEIRGRVERLVVRTFARARDLPAPPRGAARKMERAAAV*
Ga0157379_111039592	3300014968	Switchgrass Rhizosphere	APRHEIEIRGRVERLVVRTFASACDLPVPDRAGRKRA*
Ga0173483_101603662	3300015077	Soil	DLGAAPRHEIEIRGRVERLVVRTFATARDLPVLERGRRRERA*
Ga0132257_1036697861	3300015373	Arabidopsis Rhizosphere	VDLGAAARHEIEIRGRVEGLVVRTLTSARDLPVLGRGGPLKKVQSVAAE*
Ga0182041_112590111	3300016294	Soil	VALRAGIELGDAPRHEIEIRGRVERLVVRTFARARDLPVLERRGRKKLASVAAV
Ga0182041_117988231	3300016294	Soil	LGDAPRHEIEIRGRVERLVVRTFASARDLPVPERRGRKKAEAVAAQ
Ga0182041_118814961	3300016294	Soil	HEIEIRGRVERLVVRTFKSAKDLSLTQRDRAEKAERVAAAQ
Ga0182034_110107851	3300016371	Soil	DAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Ga0187863_106183801	3300018034	Peatland	GAAPRHEIEIRGRVERLVVRTFTSARDLPALERTEAKKSRAWSRSAQ
Ga0184620_101435061	3300018051	Groundwater Sediment	VMLRAGIDLADAPRHEIEIRGRVERLVVRTFTSARDLPVLERERRKRA
Ga0187766_112911561	3300018058	Tropical Peatland	IHLGAAPQHEIEIRGRVERLVVRTFTTAQDLPALNRTGSKKWR
Ga0173481_101385952	3300019356	Soil	LRAGIDLGAAPRHEIEIRGRVERLVVRRFATARDLPVLESGKRKRA
Ga0210406_101835461	3300021168	Soil	LVISEAVALRAGIDLGDAPSHEIEIRGRVERLVVRTFARARDLPVLPRGAAKKMERAAAV
Ga0210406_108679492	3300021168	Soil	RGRVEGLVVRTFTSARDLPVLGRGALKKVQSVAAE
Ga0210406_109892682	3300021168	Soil	ALRAGVDLGAAARHEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKVLAAE
Ga0210408_102777423	3300021178	Soil	AGVDLGAAARHEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKVLAAE
Ga0126371_100942783	3300021560	Tropical Forest Soil	APRHEIEIRGRVERLVVRTFARARDLPVLERGGRKKLARVAAE
Ga0126371_108539041	3300021560	Tropical Forest Soil	EIEIRGRVERLVVRTFARARDLPVLERRGRKKLASVAAV
Ga0126371_137339071	3300021560	Tropical Forest Soil	AGIDLADAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Ga0207705_103562581	3300025909	Corn Rhizosphere	RHEIEIRGRVERLVVRTFASARDLPVLESGKRKRA
Ga0207684_100300021	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	PRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEVVAAQ
Ga0207684_103080004	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	DLGDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKAESVAAQ
Ga0207684_115192541	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	HRSRDAPRHEIEIRGRIERLVVRTFASARDLPVLERRGRRKTESVAAQ
Ga0207693_109866381	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	VDLGAAARHEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKVLAAE
Ga0207700_100774245	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	ISEAVALRAGIDLGDAPSHEIEIRGRVERLVVRTFARARDLPVPPRGAPKKMQRAAAV
Ga0209687_12537712	3300026322	Soil	LGAAPRHEIEIRGRVERLVVRAFASARELPVLQRGTAKRAARMAAE
Ga0257173_10576922	3300026360	Soil	DLGAAPRHEIEIRGRVERLVVRTFASAQDLPVLSRGGAKKMERVPAE
Ga0257176_10637442	3300026361	Soil	LGAAPRHEIEIRGRVEELVVRTFTSARDLPVLGHGALKKVQSVAAE
Ga0209378_11825682	3300026528	Soil	SDAVALRAGIDLGAAPRHEIEIRGRVERLVVRAFASARELPVLQRGTAKRAARVAAE
Ga0209648_102122731	3300026551	Grasslands Soil	RHEIEIRGRVERLVVRTFASAQDLPVLPRGAAKKMERVPAE
Ga0209466_10893012	3300027646	Tropical Forest Soil	IEIRGRVERLVVRTFASARDLPILERRGRKKAESAAAV
Ga0137415_107002382	3300028536	Vadose Zone Soil	DLGAAPRHEIEIRGRVERLVVRTFASAQDLPVLSRGAAKKMERVPAA
Ga0307288_101341251	3300028778	Soil	GIDLGAAPRHEIEIRGRVERLVVRTFATARDLPVLEPGRRKRA
Ga0247824_101909701	3300028809	Soil	AAPRHEIEIRGRVERLVVRTFASARDLPVLESGKRKRA
Ga0307310_101252931	3300028824	Soil	GAAPRHEIEIRGRVERLVVRTFATARDLPVLESGKRKRA
Ga0170824_1115320731	3300031231	Forest Soil	ALRAGVDLGAAARHEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKVQSVAAE
Ga0306917_102655754	3300031719	Soil	EIRGRVERLVVRTFASARDLPVLERRGRKKVVTAAAQ
Ga0306918_114049692	3300031744	Soil	HEIEIRGRVEGLVVRTFTSARDLPVLGRGALKKVLAAE
Ga0318492_100188138	3300031748	Soil	HEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAMAAQ
Ga0318535_100951571	3300031764	Soil	IDLGDAPRHEIEIRGRVERLVVRTFTSARDLPMLERRGRKKAASVAAV
Ga0318554_103876861	3300031765	Soil	LGDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Ga0318498_100929132	3300031778	Soil	GIDVGDAPRHEIEIRGRVERLVVRTFKSAKDLSLTQRDRAEKAERVAAAQ
Ga0318552_105215132	3300031782	Soil	IPEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Ga0318548_103112911	3300031793	Soil	EIRGRVERLVVRTFTSARDLPMLERRGRKKAASVAAV
Ga0318565_101538872	3300031799	Soil	EIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Ga0310917_100145461	3300031833	Soil	EIEIRGRVERLVVRTFASARDLPVPERRGRKKAEAVAAQ
Ga0318517_103222552	3300031835	Soil	EIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Ga0318520_103383782	3300031897	Soil	PEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAVAAQ
Ga0310909_105078062	3300031947	Soil	LGDAPRHEIEIRGRVERLVVRTFASARDLPVLERRGRKKTEAMAAQ
Ga0318505_101474923	3300032060	Soil	RHEIEIRGRVERLVVRTFASARDLPVLERRGRKKVVTAAAQ
Ga0307471_1042791821	3300032180	Hardwood Forest Soil	GAAARHEIEIRGRVEGLVVRTFTSARELPVLGRGALKKVLAAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091804

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences