NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F091705

Metagenome / Metatranscriptome Family F091705

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F091705
Family Type Metagenome / Metatranscriptome
Number of Sequences 107
Average Sequence Length 95 residues
Representative Sequence MNDIAARPGQLTRQKRRWLLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH
Number of Associated Samples 75
Number of Associated Scaffolds 107

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 69.16 %
% of genes near scaffold ends (potentially truncated) 26.17 %
% of genes from short scaffolds (< 2000 bps) 72.90 %
Associated GOLD sequencing projects 68
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (96.262 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil
(42.991 % of family members)
Environment Ontology (ENVO) Unclassified
(43.925 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(60.748 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 28.57%    β-sheet: 22.45%    Coil/Unstructured: 48.98%
Feature Viewer
Powered by Feature Viewer

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 107 Family Scaffolds
PF13372Alginate_exp 22.43
PF00072Response_reg 10.28
PF01988VIT1 10.28
PF13442Cytochrome_CBB3 10.28
PF02518HATPase_c 3.74
PF00196GerE 2.80
PF06912DUF1275 2.80
PF04879Molybdop_Fe4S4 2.80
PF07681DoxX 2.80
PF00210Ferritin 1.87
PF05697Trigger_N 0.93
PF14347DUF4399 0.93
PF04342DMT_6 0.93
PF04216FdhE 0.93
PF01654Cyt_bd_oxida_I 0.93
PF01799Fer2_2 0.93
PF03446NAD_binding_2 0.93
PF02738MoCoBD_1 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 107 Family Scaffolds
COG1633Rubrerythrin, includes spore coat protein YhjRInorganic ion transport and metabolism [P] 10.28
COG1814Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 familyInorganic ion transport and metabolism [P] 10.28
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 2.80
COG3619Uncharacterized membrane protein YoaK, UPF0700 familyFunction unknown [S] 2.80
COG4270Uncharacterized membrane proteinFunction unknown [S] 2.80
COG0544FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor)Posttranslational modification, protein turnover, chaperones [O] 0.93
COG1271Cytochrome bd-type quinol oxidase, subunit 1Energy production and conversion [C] 0.93
COG3058Formate dehydrogenase maturation protein FdhEPosttranslational modification, protein turnover, chaperones [O] 0.93
COG3169Uncharacterized membrane protein, DMT/DUF486 familyFunction unknown [S] 0.93

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms96.26 %
UnclassifiedrootN/A3.74 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001661|JGI12053J15887_10180570All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1086Open in IMG/M
3300005176|Ga0066679_10276752All Organisms → cellular organisms → Bacteria1087Open in IMG/M
3300005177|Ga0066690_10974851All Organisms → cellular organisms → Bacteria535Open in IMG/M
3300005178|Ga0066688_10355223All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300005295|Ga0065707_10317774All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium972Open in IMG/M
3300005440|Ga0070705_101169785All Organisms → cellular organisms → Bacteria632Open in IMG/M
3300005444|Ga0070694_101288217All Organisms → cellular organisms → Bacteria614Open in IMG/M
3300005445|Ga0070708_100348499All Organisms → cellular organisms → Bacteria1395Open in IMG/M
3300005445|Ga0070708_101043780All Organisms → cellular organisms → Bacteria766Open in IMG/M
3300005446|Ga0066686_10012145All Organisms → cellular organisms → Bacteria4531Open in IMG/M
3300005447|Ga0066689_10001483All Organisms → cellular organisms → Bacteria8286Open in IMG/M
3300005468|Ga0070707_100414899All Organisms → cellular organisms → Bacteria1307Open in IMG/M
3300005468|Ga0070707_100650573All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300005471|Ga0070698_100705391All Organisms → cellular organisms → Bacteria → Proteobacteria951Open in IMG/M
3300005557|Ga0066704_10075100All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2184Open in IMG/M
3300005558|Ga0066698_10042949All Organisms → cellular organisms → Bacteria2819Open in IMG/M
3300005586|Ga0066691_10823619All Organisms → cellular organisms → Bacteria547Open in IMG/M
3300005888|Ga0075289_1042776All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300005921|Ga0070766_10102468All Organisms → cellular organisms → Bacteria1697Open in IMG/M
3300006034|Ga0066656_10108992All Organisms → cellular organisms → Bacteria1691Open in IMG/M
3300006057|Ga0075026_100658498All Organisms → cellular organisms → Bacteria621Open in IMG/M
3300006796|Ga0066665_10399920All Organisms → cellular organisms → Bacteria1133Open in IMG/M
3300006797|Ga0066659_10188939All Organisms → cellular organisms → Bacteria1499Open in IMG/M
3300006854|Ga0075425_101582688All Organisms → cellular organisms → Bacteria739Open in IMG/M
3300007258|Ga0099793_10160938All Organisms → cellular organisms → Bacteria1066Open in IMG/M
3300007258|Ga0099793_10261344All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium837Open in IMG/M
3300007265|Ga0099794_10218162All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium979Open in IMG/M
3300009012|Ga0066710_101849320All Organisms → cellular organisms → Bacteria908Open in IMG/M
3300009038|Ga0099829_10047016All Organisms → cellular organisms → Bacteria3177Open in IMG/M
3300009038|Ga0099829_10223100All Organisms → cellular organisms → Bacteria1531Open in IMG/M
3300009038|Ga0099829_10241614All Organisms → cellular organisms → Bacteria1470Open in IMG/M
3300009038|Ga0099829_10646121All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium879Open in IMG/M
3300009088|Ga0099830_10144068All Organisms → cellular organisms → Bacteria1827Open in IMG/M
3300009088|Ga0099830_10145493All Organisms → cellular organisms → Bacteria1818Open in IMG/M
3300009088|Ga0099830_11519260All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300009089|Ga0099828_10131211All Organisms → cellular organisms → Bacteria2200Open in IMG/M
3300009089|Ga0099828_11115579All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium701Open in IMG/M
3300009090|Ga0099827_10726878All Organisms → cellular organisms → Bacteria858Open in IMG/M
3300009090|Ga0099827_11517619All Organisms → cellular organisms → Bacteria583Open in IMG/M
3300009137|Ga0066709_101786012All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium864Open in IMG/M
3300010336|Ga0134071_10542347Not Available604Open in IMG/M
3300010359|Ga0126376_10290128All Organisms → cellular organisms → Bacteria1416Open in IMG/M
3300011270|Ga0137391_10109481All Organisms → cellular organisms → Bacteria2395Open in IMG/M
3300011271|Ga0137393_10973547All Organisms → cellular organisms → Bacteria723Open in IMG/M
3300012189|Ga0137388_10122271All Organisms → cellular organisms → Bacteria2268Open in IMG/M
3300012189|Ga0137388_10223076All Organisms → cellular organisms → Bacteria1707Open in IMG/M
3300012189|Ga0137388_10618695All Organisms → cellular organisms → Bacteria1007Open in IMG/M
3300012203|Ga0137399_11661023All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium527Open in IMG/M
3300012362|Ga0137361_10956514All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium775Open in IMG/M
3300012685|Ga0137397_10007778All Organisms → cellular organisms → Bacteria7454Open in IMG/M
3300012685|Ga0137397_10074102All Organisms → cellular organisms → Bacteria2468Open in IMG/M
3300012918|Ga0137396_10152385All Organisms → cellular organisms → Bacteria1684Open in IMG/M
3300012922|Ga0137394_10023973All Organisms → cellular organisms → Bacteria4913Open in IMG/M
3300012922|Ga0137394_10033910All Organisms → cellular organisms → Bacteria → Proteobacteria4160Open in IMG/M
3300012922|Ga0137394_10248341All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria1521Open in IMG/M
3300012922|Ga0137394_10579945All Organisms → cellular organisms → Bacteria949Open in IMG/M
3300012925|Ga0137419_10231145All Organisms → cellular organisms → Bacteria1385Open in IMG/M
3300012925|Ga0137419_10959169All Organisms → cellular organisms → Bacteria707Open in IMG/M
3300012929|Ga0137404_10113772All Organisms → cellular organisms → Bacteria2202Open in IMG/M
3300012929|Ga0137404_10122413All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales2128Open in IMG/M
3300012929|Ga0137404_10384544All Organisms → cellular organisms → Bacteria1235Open in IMG/M
3300012930|Ga0137407_10035171All Organisms → cellular organisms → Bacteria3948Open in IMG/M
3300012930|Ga0137407_10711126All Organisms → cellular organisms → Bacteria946Open in IMG/M
3300012944|Ga0137410_10018539All Organisms → cellular organisms → Bacteria4766Open in IMG/M
3300012944|Ga0137410_10034738All Organisms → cellular organisms → Bacteria3541Open in IMG/M
3300012944|Ga0137410_11199457All Organisms → cellular organisms → Bacteria653Open in IMG/M
3300018076|Ga0184609_10139097All Organisms → cellular organisms → Bacteria1113Open in IMG/M
3300018422|Ga0190265_10151587All Organisms → cellular organisms → Bacteria2268Open in IMG/M
3300018422|Ga0190265_11122185All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium906Open in IMG/M
3300018429|Ga0190272_10059156All Organisms → cellular organisms → Bacteria2264Open in IMG/M
3300018429|Ga0190272_10565777All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium986Open in IMG/M
3300019789|Ga0137408_1012154Not Available1363Open in IMG/M
3300019789|Ga0137408_1336455All Organisms → cellular organisms → Bacteria1570Open in IMG/M
3300019889|Ga0193743_1102384All Organisms → cellular organisms → Bacteria1072Open in IMG/M
3300020004|Ga0193755_1051094Not Available1350Open in IMG/M
3300020170|Ga0179594_10290992All Organisms → cellular organisms → Bacteria618Open in IMG/M
3300020579|Ga0210407_10305551All Organisms → cellular organisms → Bacteria1242Open in IMG/M
3300020580|Ga0210403_10154969All Organisms → cellular organisms → Bacteria1874Open in IMG/M
3300021088|Ga0210404_10385289All Organisms → cellular organisms → Bacteria782Open in IMG/M
3300021170|Ga0210400_10957855All Organisms → cellular organisms → Bacteria697Open in IMG/M
3300022694|Ga0222623_10157210All Organisms → cellular organisms → Bacteria885Open in IMG/M
3300025910|Ga0207684_10014259All Organisms → cellular organisms → Bacteria6856Open in IMG/M
3300025910|Ga0207684_10027854All Organisms → cellular organisms → Bacteria4813Open in IMG/M
3300025910|Ga0207684_10108472All Organisms → cellular organisms → Bacteria2376Open in IMG/M
3300025922|Ga0207646_10315316All Organisms → cellular organisms → Bacteria1413Open in IMG/M
3300025922|Ga0207646_10357891All Organisms → cellular organisms → Bacteria1319Open in IMG/M
3300025922|Ga0207646_10387815All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia1262Open in IMG/M
3300026285|Ga0209438_1002481All Organisms → cellular organisms → Bacteria6185Open in IMG/M
3300026318|Ga0209471_1129969All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1063Open in IMG/M
3300026354|Ga0257180_1003386All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales1591Open in IMG/M
3300026360|Ga0257173_1001337All Organisms → cellular organisms → Bacteria → Proteobacteria2001Open in IMG/M
3300026480|Ga0257177_1004566All Organisms → cellular organisms → Bacteria1641Open in IMG/M
3300026482|Ga0257172_1011095Not Available1485Open in IMG/M
3300026529|Ga0209806_1038271All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2334Open in IMG/M
3300026538|Ga0209056_10356614All Organisms → cellular organisms → Bacteria954Open in IMG/M
3300027846|Ga0209180_10016001All Organisms → cellular organisms → Bacteria3927Open in IMG/M
3300027846|Ga0209180_10334960All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300027846|Ga0209180_10660719All Organisms → cellular organisms → Bacteria572Open in IMG/M
3300027862|Ga0209701_10024317All Organisms → cellular organisms → Bacteria3941Open in IMG/M
3300027862|Ga0209701_10209541All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1158Open in IMG/M
3300027889|Ga0209380_10365501All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → unclassified Pseudorhodoplanes → Pseudorhodoplanes sp.847Open in IMG/M
3300027915|Ga0209069_10535348All Organisms → cellular organisms → Bacteria665Open in IMG/M
3300028047|Ga0209526_10051443All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi2900Open in IMG/M
3300029636|Ga0222749_10015359All Organisms → cellular organisms → Bacteria3116Open in IMG/M
3300031820|Ga0307473_10704874All Organisms → cellular organisms → Bacteria709Open in IMG/M
3300032180|Ga0307471_100583288All Organisms → cellular organisms → Bacteria1276Open in IMG/M
3300034817|Ga0373948_0028010All Organisms → cellular organisms → Bacteria1119Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil42.99%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil13.08%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere12.15%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil8.41%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil5.61%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.80%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.87%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.87%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil1.87%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.87%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.93%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.93%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.93%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.93%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005178Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137EnvironmentalOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005446Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135EnvironmentalOpen in IMG/M
3300005447Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_138EnvironmentalOpen in IMG/M
3300005468Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaGEnvironmentalOpen in IMG/M
3300005471Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaGEnvironmentalOpen in IMG/M
3300005557Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005888Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_103EnvironmentalOpen in IMG/M
3300005921Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6EnvironmentalOpen in IMG/M
3300006034Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105EnvironmentalOpen in IMG/M
3300006057Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012EnvironmentalOpen in IMG/M
3300006796Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300007258Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3EnvironmentalOpen in IMG/M
3300007265Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1EnvironmentalOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009090Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaGEnvironmentalOpen in IMG/M
3300009137Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158EnvironmentalOpen in IMG/M
3300010336Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300011270Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaGEnvironmentalOpen in IMG/M
3300011271Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaGEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012203Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaGEnvironmentalOpen in IMG/M
3300012362Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012918Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaGEnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012944Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300018076Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coexEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300019889Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2c2EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300020170Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300020579Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-MEnvironmentalOpen in IMG/M
3300020580Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-MEnvironmentalOpen in IMG/M
3300021088Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-MEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300022694Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coexEnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025922Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026285Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026318Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)EnvironmentalOpen in IMG/M
3300026354Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-BEnvironmentalOpen in IMG/M
3300026360Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-BEnvironmentalOpen in IMG/M
3300026480Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-07-BEnvironmentalOpen in IMG/M
3300026482Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-BEnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027846Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027862Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027915Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)EnvironmentalOpen in IMG/M
3300028047Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300029636Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031820Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12053J15887_1018057013300001661Forest SoilMWSHRCIAMLVGTALQLSITVVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0066679_1027675223300005176SoilMSDMAAGPRPFTRQKPRCMRAGRRWLLISIAIVVSLAVAGPVKAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTFVFPGAPCSCRRADGVWISGVVTH*
Ga0066690_1097485123300005177SoilMNDMAARPGQSARQIRQWMVAGRRWVLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQAGICDVPTYVFPGAPCS
Ga0066688_1035522333300005178SoilSMAILVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0065707_1031777413300005295Switchgrass RhizosphereMNDVAARSAQLTRLRWLLSSVAISISLSITAVVSAVTQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGTPCACQRADGVWISGVVTH*
Ga0070705_10116978513300005440Corn, Switchgrass And Miscanthus RhizosphereRLRWLLISIAISISLSITAVVPAATQQFPEVPLYKLLPRNYPYPLARVCYTKAGICDVPTYVFPGAPCACPRADGVWISGVITH*
Ga0070694_10128821713300005444Corn, Switchgrass And Miscanthus RhizosphereNDVAARSAQLTRLRWLLSSVAISISLSVTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0070708_10034849933300005445Corn, Switchgrass And Miscanthus RhizosphereMNDGAARSVRLTRLRWLLISIAISISLSITAVVPAATQQFPEVPLYKLLPRNYPYPLARVCYTKAGICDVPTYVFPGAPCACQRADGVWISGVITH*
Ga0070708_10104378013300005445Corn, Switchgrass And Miscanthus RhizosphereMNAIAARPGQSTRQKRRWVAAGRRWLLISIAIAVSLSNAGAVPAADQQFPQVPLYELLPADYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH*
Ga0066686_1001214543300005446SoilMNDMAARPGQSARQIRQWMVAGRRWVLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQAGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0066689_10001483103300005447SoilMNDMAARPGQSARQIRQWMVAGRRWVLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0070707_10041489923300005468Corn, Switchgrass And Miscanthus RhizosphereMNDIAARPGQSTRQKRRWMVAGRRWLLISITIFVSLSIASAVPAADQQFPQVPLYELLPANYPYLLARVCYVQVGICDVPTYVFPGTPCACRRADGAWISGVVTH*
Ga0070707_10065057323300005468Corn, Switchgrass And Miscanthus RhizosphereMNDIAARPDQSTRQKRRWVVAGRRWLLISIAIAVSLSIAGGVPAADQQFPQVPLYELLPSSYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH*
Ga0070698_10070539123300005471Corn, Switchgrass And Miscanthus RhizosphereMAGGRRWLLTSVALFASLSTAGAVATADQQFPRVPLYELLPTDYPYPLARVCYVQVGICDVPTYVFPGAACACRRADGVWISGVVTP*
Ga0066704_1007510023300005557SoilMAASRRSLLISIAISASLSIAGAVRAADQQFPQVPRYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGAWISGVVTH*
Ga0066698_1004294923300005558SoilMNDMAARPGQSARQIRQWMVAGRRWVLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0066691_1082361923300005586SoilWLLISIAIVVSLAVAGPVKAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTFVFPGAPCSCRRADGVWISGVVTH*
Ga0075289_104277623300005888Rice Paddy SoilVIRASTGRLARVAAIIGLLAIAGSAPAVARPFPEVQLYELLPPDYPYPLARVCYTEAGICDIPTYVVPGAPCACRRADGVWISGVTTH*
Ga0070766_1010246833300005921SoilMNDVTARASQLTRRERRWSVAGLRRLRNFIGMSVSLSVAAVVPAAAQEFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH*
Ga0066656_1010899233300006034SoilMNDMAARPGQSARQIRQWMVAGRRSVVISIAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0075026_10065849823300006057WatershedsMNDVTARASQLTRRERRWSVAGLRRLRNLIGMSVALSVAAVVPAAAQEFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH*
Ga0066665_1039992033300006796SoilMNDIAARPGQSARQIRQWMVAGRRWVLISLAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0066659_1018893933300006797SoilMNDIAAGLGPFTTQKPRWMAAGHRWLLISMAILVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0075425_10158268813300006854Populus RhizosphereISIAITVSLSIAGAVPAADQQFPQVPLYELLPADYPYPLARVCYVQVGICDVPTYGFPGAPCACRRADGVWISGVVTH*
Ga0099793_1016093823300007258Vadose Zone SoilMAAGRRSLLISIAISASLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH*
Ga0099793_1026134423300007258Vadose Zone SoilMLATVVILVVFAIVGAASASDPQWPEVPLYELLPSDYPYPLARVCYTQAGICDIPTYVFPGAPCECRRTDGTWVSGVCTH*
Ga0099794_1021816223300007265Vadose Zone SoilLLSSIAIYISLSITAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0066710_10184932023300009012Grasslands SoilMNDIAAGLGPFTTQKPRWMAAGHRWLLISMAILVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH
Ga0099829_1004701643300009038Vadose Zone SoilMRWRERSVQLTRLRWLLSSIAIFISLSTTAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0099829_1022310023300009038Vadose Zone SoilMVAGRRWLLISIAIAISLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0099829_1024161423300009038Vadose Zone SoilMNDVAARPGPLTRQEWRWKVAGRRWLLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPPYVFPGAPCSCRRADGVWISGVVTH*
Ga0099829_1064612123300009038Vadose Zone SoilMVAGLRWLLISIAISVSLSIAGAVRAADQQFPQVPLYELLPSNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0099830_1014406843300009088Vadose Zone SoilMRWRERSVQLTRLRWLLSSIAISISLSITAVVPAAAQQFPEVPLYELLPSTYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0099830_1014549323300009088Vadose Zone SoilMVAGRRWLLISIAIAISLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPPYVFPGAPCSCRRADGVWISGVVTH*
Ga0099830_1151926013300009088Vadose Zone SoilSVRLTRLRWLLSSIAISISLSITAVVPAVAQPFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0099828_1013121123300009089Vadose Zone SoilMNDVAARPGPLTRHERRWIVAGRRWLLISIAVCVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0099828_1111557913300009089Vadose Zone SoilLTRLRWLLSSIAISISLSITAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGV
Ga0099827_1072687823300009090Vadose Zone SoilMNDIAARPGQLTRQKRRWLLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0099827_1151761923300009090Vadose Zone SoilMAVGRRSLLISIAISASLSIAGAVRAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGAWISGVVTH*
Ga0066709_10178601223300009137Grasslands SoilMAMNDIAAGLGPFTTQKPRWMAAGHRWLLISMAILVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH
Ga0134071_1054234723300010336Grasslands SoilMVAGRRWVLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQAGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0126376_1029012813300010359Tropical Forest SoilVARPRCLLISIAIAVSLSIAGAGPADEQFPQVPLYELLPVDYPYPLARVCYVQVGICDVPTYVFPGTPCSCRRADGVWISGVVTH*
Ga0137391_1010948113300011270Vadose Zone SoilMNDVAARPGPLTRQEWRWKVAGRRWLLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0137393_1097354723300011271Vadose Zone SoilMNDVAARPGPLTRHERRWIVAGRRWLLISIAVCVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPPYVFPGAPCSCRRADGVWISGVVTH*
Ga0137388_1012227133300012189Vadose Zone SoilLTRLRWLLSSIAIFSSLSTTAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137388_1022307613300012189Vadose Zone SoilMNDVAARPGPLTRHERRWIVAGRRWLLISIAACVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRAD
Ga0137388_1061869523300012189Vadose Zone SoilMVAGLRWLLISIAISVSLSIAVAVRAADQQFPQVPLYELLPSNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0137399_1166102323300012203Vadose Zone SoilMNNITARPGQPKGQERRWVVAGRRWLLIAIAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0137361_1095651423300012362Vadose Zone SoilMNDIAARPGQLTRQKRRWLLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRAEGVWISGVVTHLFSSRPGGRESVV
Ga0137397_1000777833300012685Vadose Zone SoilMVAGRRWVLISIAIAVSLSIAGAVPAADQGFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH*
Ga0137397_1007410213300012685Vadose Zone SoilLVSIALAISLSTTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRAV
Ga0137396_1015238523300012918Vadose Zone SoilMAAGRRSLLISIAISASLSIAGAVRAADQQFPQVPRYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGAWISGVVTH*
Ga0137394_1002397323300012922Vadose Zone SoilMNDIAARPGTLTRQKRRWMVAGRRWVLISIAIAVTLSIAGAVPAADQGFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH*
Ga0137394_1003391023300012922Vadose Zone SoilLVSIALAISLSTTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137394_1024834123300012922Vadose Zone SoilMWSHRCIAMLVGTALQLSITAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137394_1057994513300012922Vadose Zone SoilMLVGTALQWLVVTLAVPPAWAQQSEVPAQLSATGEQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137419_1023114523300012925Vadose Zone SoilMNDIAARPGTLTRQKRRWMVAGRRWVLISIAIAVSLSIAGAVPAADQGFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH*
Ga0137419_1095916913300012925Vadose Zone SoilGTTMHDVAARSVRLTSRRWLLVSIAIAISLSTTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137404_1011377233300012929Vadose Zone SoilLVSIALATYPSTTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137404_1012241333300012929Vadose Zone SoilMNDVAARSAQLTRLRWLLSSVALPISLSITAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137404_1038454413300012929Vadose Zone SoilMWSHRCIAMLVGTALQLSITVVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISG
Ga0137407_1003517143300012930Vadose Zone SoilLVSIALAISLSTTAMVPAVAQQFPEVPLYELLPSKYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137407_1071112613300012930Vadose Zone SoilVHLLSGHHGGIAMNDIAARPGQLTRQKRRWLLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0137410_1001853933300012944Vadose Zone SoilMVAGRRWVLISIAIAVSLSIAGAVPAADQGFPQVPLYELLPVNYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH*
Ga0137410_1003473833300012944Vadose Zone SoilMNDVAARSVRLTSLRWLLVSIALAISLSTTAMVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH*
Ga0137410_1119945713300012944Vadose Zone SoilMNNITARPGQPKGQERRWVVAGRRWLLIAIATAVSLSTAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH*
Ga0184609_1013909723300018076Groundwater SedimentMRWRARSVQLTRLRWLLSSIAIPISLSCTAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0190265_1015158733300018422SoilVLARSVVIVGALAIVGPAPAVAQQFPEVPLYQLLPPDYPYPLARVCYTQAGICDIPTYVLPGAPCACRRSDGLWVSGVTTH
Ga0190265_1112218523300018422SoilMRWRERSVQLTRPRWLLSSIAISISLSITAVVPAAAQQFPEVPLYELLPSTYPYPLARVCYTQAGICDVPTYVFPGAPCAGQRSDGVWRTACP
Ga0190272_1005915633300018429SoilMNDVAARSVRLTSLRWLLVSIAIAISLSTTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0190272_1056577723300018429SoilMRWRARSAQLTRLRWLLSSIAIPISLSITAVVPAAARQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0137408_101215413300019789Vadose Zone SoilMNDVAARSVRLTSLRWLLVSIALAISLSTTAVVPAVAQQFPEVPLYELLPSKYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0137408_133645523300019789Vadose Zone SoilMNDVAARSAQLTRLRWLLSSVALPISLSITAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0193743_110238433300019889SoilMRWRARWVQLTRLRWLLGSIAISISLSITAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0193755_105109413300020004SoilDVAARSVRLTSLRWLLVSIALAISLSTTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0179594_1029099213300020170Vadose Zone SoilMLVGTALQLSITVVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0210407_1030555143300020579SoilMNDVTASQVTSRERGWIVAGLRRLRNLIGMSVSLSVAVVVPAAAQQFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH
Ga0210403_1015496943300020580SoilMNDVTARASQLTRRERRWSVAGLRRLRNLIGMSVALSVAAVVPAAAQEFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH
Ga0210404_1038528913300021088SoilRLRNLIGMSVALSVAAVVPAAAQEFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH
Ga0210400_1095785523300021170SoilMNDVTASQVTSRERGWIVAGLRRLRNLIGMSVSLSVAVVVPAAAQQFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWIS
Ga0222623_1015721023300022694Groundwater SedimentMRWRERSVQLTRLRWLLSSIAISISLSITAVVPAAAQQFPEVPLYELLPSTYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0207684_1001425923300025910Corn, Switchgrass And Miscanthus RhizosphereMNAIAARPGQSTRQKRRWVAAGRRWLLISIAIAVSLSNAGAVPAADQQFPQVPLYELLPADYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH
Ga0207684_1002785463300025910Corn, Switchgrass And Miscanthus RhizosphereQRWRGVATGLLRLLSPAAILVALAIAGAVPAAAQEFPEVPLYELLPPNYPYPLARVCYTQEGICDIPTYVFPGAPCECRRADGAWISGVVTH
Ga0207684_1010847253300025910Corn, Switchgrass And Miscanthus RhizosphereMNDGAARSVRLTRLRWLLISIAISISLSITAVVPAATQQFPEVPLYKLLPRNYPYPLARVCYTKAGICDVPTYVFPGAPCACQRADGVWISGVITH
Ga0207646_1031531633300025922Corn, Switchgrass And Miscanthus RhizosphereMAGGRRWLLTSVALFASLSTAGAVATADQQFPRVPLYELLPTDYPYPLARVCYVQVGICDVPTYVFPGAACACRRADGVWISGVVTP
Ga0207646_1035789123300025922Corn, Switchgrass And Miscanthus RhizosphereMNDIAARPDQSTRQKRRWVVAGRRWLLISIAIAVSLSIAGGVPAADQQFPQVPLYELLPSSYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH
Ga0207646_1038781523300025922Corn, Switchgrass And Miscanthus RhizosphereMNDIAARPGQSTRQKRRWMVAGRRWLLISITIFVSLSIASAVPAADQQFPQVPLYELLPANYPYLLARVCYVQVGICDVPTYVFPGTPCACRRADGAWISGVVTH
Ga0209438_100248123300026285Grasslands SoilMNDVAARSVRLTSLRWLLVSIALAISLSTTAVVPAVAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0209471_112996923300026318SoilMSDMAAGPRPFTRQKPRCMRAGRRWLLISIAIVVSLAVAGPVKAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTFVFPGAPCSCRRADGVWISGVVTH
Ga0257180_100338613300026354SoilMRWRERSVQLTRLRWLLSSIAIFISLSTTAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADG
Ga0257173_100133743300026360SoilMRWRERSVQLTRLRWLLSSIAIFISLSTTAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0257177_100456623300026480SoilMRWRERSVQLTRLRWLLSSIAISISLSITAVVPAAAQQFPEVPLYELLPSNYPYPLARVCYTQAGICDVPTYVFPGAPCACQRADGVWISGVVTH
Ga0257172_101109523300026482SoilMNDIAARPVQLKRQKRRWMVAGRRWVLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCACRRADGVWISGVVTH
Ga0209806_103827113300026529SoilKPRCMRAGRRWLLISIAIVVSLAVAGPVKAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTFVFPGAPCSCRRADGVWISGVVTH
Ga0209056_1035661413300026538SoilMNDMAARPGQSARQIRQWMVAGRRWVLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPTNYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH
Ga0209180_1001600123300027846Vadose Zone SoilMNDVAARPGPLTRQEWRWKVAGRRWLLISIAIAVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPPYVFPGAPCSCRRADGVWISGVVTH
Ga0209180_1033496023300027846Vadose Zone SoilMNDVAARPDPLTRHERRWMVAGRRWLLISIAIAISLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH
Ga0209180_1066071923300027846Vadose Zone SoilMNDVAARPGPLTRHERRWIVAGRRWLLISIAVCVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADEVWISGVVTH
Ga0209701_1002431723300027862Vadose Zone SoilMNDVAARPGPLTRHERRWIVAGRRWLLISIAVCVSLSIAGAVPAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH
Ga0209701_1020954123300027862Vadose Zone SoilMLATVVILVVFAIVGAASASDPQWPEVPLYELLPSDYPYPLARVCYTQAGICDIPTYVFPGAPCECRRTDGTWVSGVCTH
Ga0209380_1036550123300027889SoilMNDVTARASQLTRRERRWSVAGLRRLRNFIGMSVSLSVAAVVPAAAQEFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH
Ga0209069_1053534823300027915WatershedsMNDVTARASQLTSRERRGIVAGLRRLRNLIGMSVSLSVAAVVPAAAQQFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTYVFPGAPCACQGADGVWISGVVTH
Ga0209526_1005144333300028047Forest SoilMNDIAARPSQPRRRDRRWMVVGRRWLLISIAIAVSLSMAGAVRAADQQFPQVPLYELLPANYPYPLARVCYVQVGICDVPTYVFPGAPCSCRRADGVWISGVVTH
Ga0222749_1001535933300029636SoilMNDVTARASQLTRRDRGWSVAGLRRLRNLIGMSVALSVAAVVPAAAQEFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH
Ga0307473_1070487413300031820Hardwood Forest SoilGAAMNDVTARASQLTSRERRGIVAGLRRLRNLIGMSVSLSVAAVVPAAAQQFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH
Ga0307471_10058328833300032180Hardwood Forest SoilMNDVTARASQLTSRERRGIVAGLRRLRNLIGMSVALSVAAVVPAAAQEFPEVPLYELLAPDYPYPLARVCYTQAGICDVPTHVFPGAPCACRRGDGVWISGVVTH
Ga0373948_0028010_792_10583300034817Rhizosphere SoilVIRASTGRLARVAAIIGLLAIAGSTPAVARPFPEVRLYELLPPDYPYPLARVCYTEAGICDIPTYVVPGAPCACRRADGVWISGVTTH

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.