Metagenome / Metatranscriptome Family F091551

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091551
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	78 residues
Representative Sequence	MTAIPPTTEPATRTAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA
Number of Associated Samples	66
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.98 %
% of genes near scaffold ends (potentially truncated)	39.25 %
% of genes from short scaffolds (< 2000 bps)	86.92 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (86.916 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (29.907 % of family members)
Environment Ontology (ENVO)	Unclassified (57.009 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (64.486 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.05% β-sheet: 0.00% Coil/Unstructured: 44.95%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF03592	Terminase_2	5.61
PF03401	TctC	4.67
PF02796	HTH_7	2.80
PF03354	TerL_ATPase	1.87
PF00596	Aldolase_II	1.87
PF00239	Resolvase	1.87
PF04392	ABC_sub_bind	1.87
PF00296	Bac_luciferase	1.87
PF13531	SBP_bac_11	0.93
PF07883	Cupin_2	0.93
PF00196	GerE	0.93
PF07508	Recombinase	0.93
PF04909	Amidohydro_2	0.93
PF04218	CENP-B_N	0.93
PF05717	TnpB_IS66	0.93
PF13936	HTH_38	0.93
PF03734	YkuD	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG3728	Phage terminase, small subunit	Mobilome: prophages, transposons [X]	5.61
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	4.67
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.80
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	1.87
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.87
COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	Mobilome: prophages, transposons [X]	1.87
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.93
COG3436	Transposase	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	86.92 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	84.11 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	75.70 %
Unclassified	root	N/A	13.08 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	47.66 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	20.56 %
Unclassified	root	N/A	13.08 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	35.51 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
Unclassified	root	N/A	13.08 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	4.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	34.58 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
Unclassified	root	N/A	13.08 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	4.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	29.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
Unclassified	root	N/A	13.08 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	4.67 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	4.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium jicamae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	29.91 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	20.56 %
Unclassified	root	N/A	13.08 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4.67 %
Bradyrhizobium sp. JYMT SZCCT0428	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	3.74 %
Bradyrhizobium sp. JS329	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JS329	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000580\|AF_2010_repII_A01DRAFT_1025920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10038562	Not Available	1270	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1013937	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1532	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10038674	Not Available	1097	Open in IMG/M
3300004633\|Ga0066395_10054314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1786	Open in IMG/M
3300004633\|Ga0066395_10542122	Not Available	675	Open in IMG/M
3300005332\|Ga0066388_100395157	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2028	Open in IMG/M
3300005332\|Ga0066388_100430091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1963	Open in IMG/M
3300005332\|Ga0066388_100471103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1895	Open in IMG/M
3300005332\|Ga0066388_100689393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1630	Open in IMG/M
3300005332\|Ga0066388_101264164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1269	Open in IMG/M
3300005332\|Ga0066388_102427712	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	951	Open in IMG/M
3300005332\|Ga0066388_103335176	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	820	Open in IMG/M
3300005332\|Ga0066388_104187322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	735	Open in IMG/M
3300005332\|Ga0066388_104506641	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	709	Open in IMG/M
3300005332\|Ga0066388_106263278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	600	Open in IMG/M
3300005332\|Ga0066388_106651210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	582	Open in IMG/M
3300005332\|Ga0066388_107867182	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	533	Open in IMG/M
3300005363\|Ga0008090_10067954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1795	Open in IMG/M
3300005713\|Ga0066905_100052824	All Organisms → cellular organisms → Bacteria → Proteobacteria	2500	Open in IMG/M
3300005764\|Ga0066903_100522103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2022	Open in IMG/M
3300005764\|Ga0066903_100692464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1794	Open in IMG/M
3300005764\|Ga0066903_101465463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1286	Open in IMG/M
3300005764\|Ga0066903_101968847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1121	Open in IMG/M
3300005764\|Ga0066903_103684621	Not Available	824	Open in IMG/M
3300005764\|Ga0066903_104376533	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	754	Open in IMG/M
3300005764\|Ga0066903_104411313	All Organisms → cellular organisms → Bacteria	751	Open in IMG/M
3300005764\|Ga0066903_106106353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	630	Open in IMG/M
3300005764\|Ga0066903_107461393	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	564	Open in IMG/M
3300005764\|Ga0066903_108773445	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	513	Open in IMG/M
3300005764\|Ga0066903_109061816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	503	Open in IMG/M
3300005764\|Ga0066903_109115007	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	502	Open in IMG/M
3300005937\|Ga0081455_10053091	All Organisms → cellular organisms → Bacteria → Proteobacteria	3465	Open in IMG/M
3300006051\|Ga0075364_10214369	Not Available	1306	Open in IMG/M
3300006051\|Ga0075364_10438872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	892	Open in IMG/M
3300006844\|Ga0075428_101370665	All Organisms → cellular organisms → Bacteria → Proteobacteria	743	Open in IMG/M
3300006845\|Ga0075421_100616588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	1273	Open in IMG/M
3300006846\|Ga0075430_100367186	All Organisms → cellular organisms → Bacteria → Proteobacteria	1188	Open in IMG/M
3300006847\|Ga0075431_100573031	All Organisms → cellular organisms → Bacteria → Proteobacteria	1115	Open in IMG/M
3300009100\|Ga0075418_11793763	Not Available	667	Open in IMG/M
3300009156\|Ga0111538_11840629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	762	Open in IMG/M
3300009792\|Ga0126374_11076688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	636	Open in IMG/M
3300010043\|Ga0126380_10305425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1134	Open in IMG/M
3300010047\|Ga0126382_10712114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JYMT SZCCT0428	843	Open in IMG/M
3300010048\|Ga0126373_10630188	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	1127	Open in IMG/M
3300010048\|Ga0126373_12879567	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	537	Open in IMG/M
3300010358\|Ga0126370_10172766	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1602	Open in IMG/M
3300010358\|Ga0126370_10189622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1542	Open in IMG/M
3300010358\|Ga0126370_10726867	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	876	Open in IMG/M
3300010359\|Ga0126376_10520265	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1106	Open in IMG/M
3300010360\|Ga0126372_12320159	Not Available	587	Open in IMG/M
3300010360\|Ga0126372_13102036	Not Available	516	Open in IMG/M
3300010361\|Ga0126378_11087823	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	901	Open in IMG/M
3300010362\|Ga0126377_10686114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1076	Open in IMG/M
3300010376\|Ga0126381_100698075	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1451	Open in IMG/M
3300010376\|Ga0126381_101499081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	975	Open in IMG/M
3300010398\|Ga0126383_10196080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1934	Open in IMG/M
3300010398\|Ga0126383_11658941	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	728	Open in IMG/M
3300010398\|Ga0126383_13220485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	533	Open in IMG/M
3300010398\|Ga0126383_13259328	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	530	Open in IMG/M
3300010863\|Ga0124850_1000084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12149	Open in IMG/M
3300010863\|Ga0124850_1066168	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300010868\|Ga0124844_1228408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	667	Open in IMG/M
3300012199\|Ga0137383_11372649	Not Available	501	Open in IMG/M
3300012532\|Ga0137373_10554480	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	872	Open in IMG/M
3300012948\|Ga0126375_10581053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	852	Open in IMG/M
3300012971\|Ga0126369_13024422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	550	Open in IMG/M
3300012984\|Ga0164309_10225972	All Organisms → cellular organisms → Bacteria	1305	Open in IMG/M
3300015371\|Ga0132258_11301511	All Organisms → cellular organisms → Bacteria → Proteobacteria	1837	Open in IMG/M
3300015371\|Ga0132258_11512369	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1695	Open in IMG/M
3300015374\|Ga0132255_101081246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1205	Open in IMG/M
3300016341\|Ga0182035_10484655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1054	Open in IMG/M
3300016357\|Ga0182032_10916917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	745	Open in IMG/M
3300016387\|Ga0182040_10604633	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	888	Open in IMG/M
3300016387\|Ga0182040_11672268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	543	Open in IMG/M
3300016445\|Ga0182038_10702136	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	881	Open in IMG/M
3300021560\|Ga0126371_10736888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. JS329	1133	Open in IMG/M
3300021560\|Ga0126371_11308988	Not Available	858	Open in IMG/M
3300021560\|Ga0126371_11607404	Not Available	776	Open in IMG/M
3300027874\|Ga0209465_10085903	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1535	Open in IMG/M
3300027909\|Ga0209382_11224390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	766	Open in IMG/M
3300027909\|Ga0209382_11532080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	663	Open in IMG/M
3300031543\|Ga0318516_10001587	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8883	Open in IMG/M
3300031573\|Ga0310915_10001672	All Organisms → cellular organisms → Bacteria → Proteobacteria	11615	Open in IMG/M
3300031573\|Ga0310915_10002360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	10011	Open in IMG/M
3300031640\|Ga0318555_10540708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	631	Open in IMG/M
3300031682\|Ga0318560_10005597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5057	Open in IMG/M
3300031719\|Ga0306917_11044520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	637	Open in IMG/M
3300031723\|Ga0318493_10009719	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3937	Open in IMG/M
3300031748\|Ga0318492_10256345	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	904	Open in IMG/M
3300031764\|Ga0318535_10006866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	3848	Open in IMG/M
3300031768\|Ga0318509_10698724	Not Available	563	Open in IMG/M
3300031778\|Ga0318498_10179790	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	961	Open in IMG/M
3300031779\|Ga0318566_10202243	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	986	Open in IMG/M
3300031794\|Ga0318503_10019959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1880	Open in IMG/M
3300031835\|Ga0318517_10093795	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1312	Open in IMG/M
3300031846\|Ga0318512_10004485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	4914	Open in IMG/M
3300031880\|Ga0318544_10109693	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1044	Open in IMG/M
3300031893\|Ga0318536_10217363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	972	Open in IMG/M
3300031942\|Ga0310916_11203988	Not Available	626	Open in IMG/M
3300032010\|Ga0318569_10122634	All Organisms → cellular organisms → Bacteria → Proteobacteria	1185	Open in IMG/M
3300032044\|Ga0318558_10387344	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	695	Open in IMG/M
3300032044\|Ga0318558_10490540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	613	Open in IMG/M
3300032060\|Ga0318505_10163931	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300032065\|Ga0318513_10000560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10421	Open in IMG/M
3300032261\|Ga0306920_101932122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium jicamae	829	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	86.92%
Host-Associated	Host-Associated	13.08%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	86.92%
Plants	Host-Associated → Plants	13.08%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	86.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	7.48%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.74%
Roots	Host-Associated → Plants → Roots	1.87%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.01%
Loam	Environmental → Terrestrial → Soil → Loam	29.91%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.80%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	1.87%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.84%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	29.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.23%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	7.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.80%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	1.87%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	29.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	22.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.56%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.74%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.80%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.87%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	1.87%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.93%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000580	Forest soil microbial communities from Amazon forest - 2010 replicate II A01	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006051	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031794	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A01DRAFT_10259201	3300000580	Forest Soil	QDAEMTAIPPTTEPVAPSAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
AF_2010_repII_A1DRAFT_100385621	3300000597	Forest Soil	MTAIPPTTKPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRD
AF_2010_repII_A100DRAFT_10139372	3300000655	Forest Soil	MTAIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLTAENRHDYDSVQSAFYAFLDHALRIA*
AF_2010_repII_A001DRAFT_100386741	3300000793	Forest Soil	MTAIPLTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRHDYXXVQSAFYAFLDHALGELRDA*
Ga0066395_100543143	3300004633	Tropical Forest Soil	MTAIPPTTEPAARSAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0066395_105421221	3300004633	Tropical Forest Soil	PSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0066388_1003951572	3300005332	Tropical Forest Soil	MTAIPPSNEPATRSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLPPGNRHDYVSVQSALYEFLDRALGELGDA*
Ga0066388_1004300913	3300005332	Tropical Forest Soil	MAAIPPTTEPAALSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLEAENRHDYDSVQSAFMLV*
Ga0066388_1004711033	3300005332	Tropical Forest Soil	MTATPPTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGGLRDA*
Ga0066388_1006893931	3300005332	Tropical Forest Soil	MSAIPSTNEPAPLTAAAERMRRHRQRRRDGLRCLIIELRETEVDVLISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0066388_1011661742	3300005332	Tropical Forest Soil	MTIPEEAFFVYKVLESNIWAKTLLSLSSTQPASRTDAAERMRRHRERRRDGLRCLIIELRETEIDALIRNGLLRSENRDDYESVQSALYVFLDHALGK*
Ga0066388_1012641641	3300005332	Tropical Forest Soil	MTGIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRQTEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0066388_1024277122	3300005332	Tropical Forest Soil	MTASSPTTDAAAPSAAAERMRRHRQRRRYGLRCLMIELRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0066388_1033351762	3300005332	Tropical Forest Soil	MTAIPPTTEPVAPSAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHA
Ga0066388_1041873221	3300005332	Tropical Forest Soil	MLTPPSSAEPATRTAAAERMRRHRQRRRDGLRCLMIELRETEIDTLISNGLLAADNRHNYDSVQSAFYAFLDDAFGELRDA*
Ga0066388_1045066411	3300005332	Tropical Forest Soil	MTASSPTTEPAALSAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDV*
Ga0066388_1062632781	3300005332	Tropical Forest Soil	MTMTFPPSLSSVEPSTRTAAAERMRRHRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYASVQSAFYAFLDDAFGELRDA*
Ga0066388_1066512102	3300005332	Tropical Forest Soil	MTATPPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETGIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0066388_1078671821	3300005332	Tropical Forest Soil	SLSSVEPSTRTAAAERMRRHRQRRRDGLRCLMIELRETEIDVLVSNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRNA*
Ga0008090_100679543	3300005363	Tropical Rainforest Soil	MTAIPPTTKPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLTAENRHDYDSVQSAFYAFLDHALRIA*
Ga0066905_1000528243	3300005713	Tropical Forest Soil	MTLPPSLSSVEPPTRTAAAERMRRHRQRRRDGLRCLIIELRETEVDVLISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0066903_1005221034	3300005764	Tropical Forest Soil	MTAIPQTTEPATRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRQGLLAAENRHDYDAVQSAFYAFLDHALGELRDA*
Ga0066903_1006924643	3300005764	Tropical Forest Soil	MTMTFPPSLSSVEPSTRTAAAERMRRHRQRRRDGLRCLMIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0066903_1014654633	3300005764	Tropical Forest Soil	MTASPPTTEPATRTAAADRMRRHRQRRRDGLRCLMIELRETEIDALITNRLLLPENRHDYELVQSAFYAFLDHALGDLRDA*
Ga0066903_1019688471	3300005764	Tropical Forest Soil	MDLTKLLPSPTTEPAAPSAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRKGLLEAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0066903_1036846212	3300005764	Tropical Forest Soil	MTAIPPTTEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0066903_1043765332	3300005764	Tropical Forest Soil	MLTPPSSVEPPTRTAAAERMRRHRQRRRDGLRCLIIELRETEVDALISNGLLAAEKRQDYDSVQTAFYAFLDDAFGELRDA*
Ga0066903_1044113131	3300005764	Tropical Forest Soil	MTATPPTTEPAARSAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFL
Ga0066903_1061063531	3300005764	Tropical Forest Soil	MNSFAAERMRRHRQRRRDGLRCLIIELRETEIDALIRKGLLGAENRHDYDSIQSAFYAFLDHALGELGDA*
Ga0066903_1074613932	3300005764	Tropical Forest Soil	MDLTKLLPPPTTEPATRTAAAERMRRHRQRRRDGLRCLIIELRETEVDALIKKGLLAAENRHDYGSVQLAFYEFLDRALGELGDA*
Ga0066903_1087734451	3300005764	Tropical Forest Soil	MTLPPPSSAEPTTGTAAAKRMRRHRQRRRDGLRCLIIELREAEVDVLISNGLLAAEKRQDYDSVQTAFYAFLDDAF
Ga0066903_1090618161	3300005764	Tropical Forest Soil	TEMSAIPSTNEPAPLTAAAERMRRHRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0066903_1091150071	3300005764	Tropical Forest Soil	MLTPPSTAEPETRTAAAQRMRRHRQRRRDGLRCLLIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0081455_100530914	3300005937	Tabebuia Heterophylla Rhizosphere	MLTPPSSAEPATLTAAAERMRRHRQRRRDGLRCLMIELRETEIDALISNGLLAADNRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0075364_102143691	3300006051	Populus Endosphere	MLMTLPPLSCAESATRTAAAERMRQYRQRRSEGLRCFIIELRETEVDVLIRKGLLPAENRQDYASVQSALYAFFDDALEELRDA*
Ga0075364_104388721	3300006051	Populus Endosphere	SSAEPATGTAAAERMRRHRQRRRDGLRCLMIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0075428_1013706651	3300006844	Populus Rhizosphere	MLMTLPPPSSAEPATGNAAAERMRRHRQRRRDGLRCLMIELRETEIDALISNGLLAAADREDYDSLQSAFYAFLDDAFEEFRDA*
Ga0075421_1006165882	3300006845	Populus Rhizosphere	MLTLPSTAEPETRTAAAERMRRHRQRRRDGFRCLMIELRETEIDALISNGLLAAYNRQDYDSVQSAFYAFLDDAFEELRDA*
Ga0075430_1003671861	3300006846	Populus Rhizosphere	LPSTAEPETRTAAAERMRRHRQRRRDGFRCLMIELRETEIDALISNGLLAAYNRQDYDSVQSAFYAFLDDAFEELRDA*
Ga0075431_1005730311	3300006847	Populus Rhizosphere	ISNSESQIWILMLTLPSTAEPETRTAAAERMRRHRQRRRDGFRCLMIELRETEIDALISNGLLAAYNRQDYDSVQSAFYAFLDDAFEELRDA*
Ga0075418_117937631	3300009100	Populus Rhizosphere	MLTPPSTAEPETRTAAAERMRRHRQRRSDGLRCLMIELRETEIDALISNGLLAAEKRQDYDSVQTAFYAFLDDAFGELRDA*
Ga0111538_118406292	3300009156	Populus Rhizosphere	MLTPPSTAEPQTRTAAAERMRRHRQRRSDGLRCLMIELRETEIDALISNGLLAAEKRQDYDSVQTAFYAFLDDAFGELRDA*
Ga0126374_110766881	3300009792	Tropical Forest Soil	MTAIPTTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0126380_103054252	3300010043	Tropical Forest Soil	MTAIPLTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLEAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126382_107121142	3300010047	Tropical Forest Soil	MLTPPSSVEPPTRTAAAERMRRLRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYDSVQTAFYAFLDDAFGELRDA*
Ga0126373_106301882	3300010048	Tropical Forest Soil	MTAIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLTAENRHDYDSVQSAFHAFLDHALRIA*
Ga0126373_128795672	3300010048	Tropical Forest Soil	MTAIPPTTEPATRTAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126370_101727663	3300010358	Tropical Forest Soil	MTATPPTTEPAARSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126370_101896222	3300010358	Tropical Forest Soil	MTAIPPTTEPAALSAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0126370_107268671	3300010358	Tropical Forest Soil	MTFPPSLSSVEPSTRTAAAERMRRHRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYDSIQSAFYAFLDNAFGELRDA*
Ga0126376_105202651	3300010359	Tropical Forest Soil	QNAEMTAIPPTTEPAALSAAAERMRRHRQRRRDGLRCFMIELRETEVDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0126372_123201592	3300010360	Tropical Forest Soil	AERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0126372_131020361	3300010360	Tropical Forest Soil	MTAIPPTTKPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLTAENRHDYDSVQSAFHAFLDHALRIA*
Ga0126378_110878231	3300010361	Tropical Forest Soil	EPAALSAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0126377_106861141	3300010362	Tropical Forest Soil	AAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126381_1006980751	3300010376	Tropical Forest Soil	MTAIPTTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLPPGNRHDYDSVQSAL*
Ga0126381_1014990812	3300010376	Tropical Forest Soil	MTAIPPTTEPAALSAAAERMRRHRQRRRDGLRCFMIELRETEVDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA*
Ga0126383_101960801	3300010398	Tropical Forest Soil	MTAIPPTTEPTAASAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126383_116589412	3300010398	Tropical Forest Soil	MTATLPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126383_132204851	3300010398	Tropical Forest Soil	MTLPPSLSSVEPPTRTAAAERMRRHRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYASVQSAFYAFLDDAFGELRDA*
Ga0126383_132593281	3300010398	Tropical Forest Soil	MTAIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0124850_100008414	3300010863	Tropical Forest Soil	MTAIPPTTEPAALSAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALDELGDA*
Ga0124850_10661681	3300010863	Tropical Forest Soil	AARSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRQGLLAAENRNRHDYDSVQSALYAFLDRALGELGDA*
Ga0124844_12284082	3300010868	Tropical Forest Soil	LPPTRQDAEMTAIPPTTEPAALSAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0137383_113726491	3300012199	Vadose Zone Soil	MTAIPPTTEPMTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRYDYDSVQSALYAFFDRALGEL
Ga0137373_105544801	3300012532	Vadose Zone Soil	MTAIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENCHDYDSVQSALYAFFDRALGELGDA*
Ga0126375_105810531	3300012948	Tropical Forest Soil	AIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFIIELRETEIDALIRNGLLAAENRHDYDSVQSAFYAFLDHALGELRDA*
Ga0126369_130244221	3300012971	Tropical Forest Soil	MTLPPPSSAEPTTGTAAAKRMRRHRQRRRDGLRCLIIELREAEVDVLISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELQSKLPVRTLQ*
Ga0164309_102259721	3300012984	Soil	MQDAGMTVISSTIEPAIRTGAAERMRRHRQRRRDGLRCLIIELRETEVDTLIRKGLLQSENREDYASVQSAL
Ga0132258_113015111	3300015371	Arabidopsis Rhizosphere	TAAAERMRRHRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0132258_115123693	3300015371	Arabidopsis Rhizosphere	MQTTLPTPSSAEFTARTAAAERMRRHRQRRRDGLRCLIIELRETEIDALISNGLLAADNRQDYDSVQTAFYAFLDDAFGELRDA*
Ga0132255_1010812462	3300015374	Arabidopsis Rhizosphere	MTLPPSLSSVEPPTRTAAAERMRRHRQRRRDGLRCLIIELRETEIDALISNGLLAAEKRQDYDSVQSAFYAFLDDAFGELRDA*
Ga0182035_104846551	3300016341	Soil	TEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0182032_109169171	3300016357	Soil	EGSEMTAILPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELRDA
Ga0182040_106046331	3300016387	Soil	MTAIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFIIELRETEIDALIRNGLLAAENRHDYDSVQSAL
Ga0182040_116722681	3300016387	Soil	MTAIPPSNEPTAPSAAAERMRRHRQRRRDGLRCFMIELRETEINALIRNGLLAAENSHDYDSVQSALY
Ga0182038_107021361	3300016445	Soil	MTAIPSTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEVVALIRKGLLAAEKRDDYDSVQSGSMHSLIVL
Ga0126371_107368882	3300021560	Tropical Forest Soil	MNSFAAERMRRHRQRRRDGLRCLIIELRETEIDALIRKGLLGAENRHDYDSIQSAFYAFLDHALGELGDA
Ga0126371_113089882	3300021560	Tropical Forest Soil	MTAIPPTTKPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLTAENRHDYDSVQSAFHAFLDHALRIA
Ga0126371_116074042	3300021560	Tropical Forest Soil	SAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA
Ga0209465_100859032	3300027874	Tropical Forest Soil	MTAIPPTTEPAARSAAAERMRRHRQRRRDGLRCFMIELRETEIDALITKGLLGAENRHDYDSVQSAFYAFLDHALGELGDA
Ga0209382_112243902	3300027909	Populus Rhizosphere	MLTLPSTAEPETRTAAAERMRRHRQRRRDGFRCLMIELRETEIDALISNGLLAAYNRQDYDSVQSAFYAFLDDAFEELRDA
Ga0209382_115320801	3300027909	Populus Rhizosphere	MTLPPLSCAESATRTAAAERMRQYRQRRREGLRCFIIELRETEVDVLIRKGLLPAENRQDYASVQSALYAFFDDALEELRDA
Ga0318516_100015879	3300031543	Soil	MTAIPPTTEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0310915_100016723	3300031573	Soil	MTAIPPTTERAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRLDYDSVQSALYAFHDRALGELGDA
Ga0310915_100023601	3300031573	Soil	EMTAIPPTTEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318555_105407081	3300031640	Soil	MTAIPPSNEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGQLAAENSHDYDSVQSALYA
Ga0318560_100055976	3300031682	Soil	MTAIPPTTEPVTRTAGAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0306917_110445202	3300031719	Soil	MTAIPPSNEAAARSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSA
Ga0318493_100097191	3300031723	Soil	MTAIPPTTEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLD
Ga0318492_102563452	3300031748	Soil	MTAIPPSNEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENSHDYDSVQSALYAF
Ga0318535_100068664	3300031764	Soil	MTAIPPTTEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFPDHALGELRDA
Ga0318509_106987242	3300031768	Soil	MTAIPPSNEPASRQRRRDGLRCLMIELRETEVDALIRQGLLAAENRHDYDSVQSALY
Ga0318498_101797901	3300031778	Soil	TTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318566_102022431	3300031779	Soil	MTAILPTTEPAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318503_100199591	3300031794	Soil	MTAIPPTTEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYDSVQSALYAF
Ga0318517_100937951	3300031835	Soil	MTAIPPTTEPVTRTAAAERMRRHRPRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318512_100044851	3300031846	Soil	MTAIPPTTEPVTRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFP
Ga0318544_101096931	3300031880	Soil	EMTAIPPSNEPTAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0318536_102173632	3300031893	Soil	AERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0310916_112039881	3300031942	Soil	AAERMRRHRQRRRDGLRCFMIELRETEIDALIRKGLLAAENRHDYDSVQSAFYAFLDHALGELRDA
Ga0318569_101226341	3300032010	Soil	MTAIPPTTERAAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENRLDYDSVQSAL
Ga0318558_103873441	3300032044	Soil	MTAIPPTTEPAAPSAAAERMRRHRQRRRDGLRCFIIELRETEIDALIRNGLLAAENRHDYDSVQSALY
Ga0318558_104905402	3300032044	Soil	MTAIPPSNEPTAPSAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENSHDYDSVQSALYAF
Ga0318505_101639313	3300032060	Soil	MTAIPPPAEHATRTAAAERMRRHRQRRRDGLRCFMIELRETEIDALIRNGLLAAENSHDYDSVQSALY
Ga0318513_1000056011	3300032065	Soil	MTAIPPTTEPVTRTAAAQRMRRHRQRRRDGLRCLVIELRETEIDALIRNGLLAAENRHDYVSVQSAFYAFLDHALGELRDA
Ga0306920_1019321222	3300032261	Soil	MTAIPPTTEPVAPSAAAERMRRHRQRRRDGLRCLMIELRETEIDALIRNGLLAAENRHDYDSVQSALYSFLDRALGELRDA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091551

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences