Metagenome / Metatranscriptome Family F091063

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091063
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	53 residues
Representative Sequence	DAFVKVVLHALDPAADQAPGALEAELGAPLLVDSSRERLPAAADVLRAEAPAG
Number of Associated Samples	84
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.93 %
% of genes near scaffold ends (potentially truncated)	99.07 %
% of genes from short scaffolds (< 2000 bps)	94.44 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.38

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (63.889 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (37.037 % of family members)
Environment Ontology (ENVO)	Unclassified (53.704 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (46.296 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 32.10% β-sheet: 0.00% Coil/Unstructured: 67.90%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.38
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.38
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF11139	SfLAP	12.96
PF00892	EamA	2.78
PF00248	Aldo_ket_red	2.78
PF00196	GerE	1.85
PF00293	NUDIX	1.85
PF00106	adh_short	0.93
PF05598	DUF772	0.93
PF01243	Putative_PNPOx	0.93
PF00011	HSP20	0.93
PF01609	DDE_Tnp_1	0.93
PF00378	ECH_1	0.93
PF01471	PG_binding_1	0.93
PF00313	CSD	0.93
PF13738	Pyr_redox_3	0.93
PF12681	Glyoxalase_2	0.93
PF13450	NAD_binding_8	0.93
PF00291	PALP	0.93
PF07690	MFS_1	0.93
PF13669	Glyoxalase_4	0.93
PF03006	HlyIII	0.93
PF13193	AMP-binding_C	0.93
PF10604	Polyketide_cyc2	0.93
PF00216	Bac_DNA_binding	0.93
PF00089	Trypsin	0.93
PF14224	DUF4331	0.93
PF00085	Thioredoxin	0.93
PF12833	HTH_18	0.93
PF12872	OST-HTH	0.93
PF08962	Rv2632c-like	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.93
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.93
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.93
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.93
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.93
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0776	Bacterial nucleoid DNA-binding protein IHF-alpha	Replication, recombination and repair [L]	0.93
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.93
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	63.89 %
Unclassified	root	N/A	36.11 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	63.89 %
Unclassified	root	N/A	36.11 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	63.89 %
Unclassified	root	N/A	36.11 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	51.85 %
Unclassified	root	N/A	36.11 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	50.00 %
Unclassified	root	N/A	36.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	36.11 %
Unclassified	root	N/A	36.11 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.11 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	2.78 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	2.78 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	1.85 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Bifidobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales	0.93 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	0.93 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	0.93 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.93 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.11 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	2.78 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	2.78 %
Treboniaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae	1.85 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	0.93 %
Bifidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae	0.93 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.93 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.11 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	2.78 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	2.78 %
Trebonia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia	1.85 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.93 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.93 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.11 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	2.78 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.85 %
Streptomyces viridosporus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces viridosporus	0.93 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.93 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.93 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.93 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	36.11 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	2.78 %
Trebonia kvetii	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1.85 %
Streptomyces sp. G1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. G1	0.93 %
Streptomyces viridosporus ATCC 14672	strain	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces viridosporus → Streptomyces viridosporus ATCC 14672	0.93 %
Saccharopolyspora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	0.93 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.93 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.93 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	0.93 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2189573003\|GZIR7W401CRNW5	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	535	Open in IMG/M
3300004633\|Ga0066395_10398972	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. G1	775	Open in IMG/M
3300005332\|Ga0066388_100619489	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1702	Open in IMG/M
3300005338\|Ga0068868_100595701	Not Available	979	Open in IMG/M
3300005363\|Ga0008090_13393552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	510	Open in IMG/M
3300005436\|Ga0070713_101340964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	693	Open in IMG/M
3300005439\|Ga0070711_100189258	Not Available	1580	Open in IMG/M
3300005614\|Ga0068856_101893606	Not Available	607	Open in IMG/M
3300009792\|Ga0126374_11447326	All Organisms → cellular organisms → Bacteria	561	Open in IMG/M
3300010043\|Ga0126380_10786497	Not Available	777	Open in IMG/M
3300010043\|Ga0126380_11850826	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300010358\|Ga0126370_11502647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	640	Open in IMG/M
3300010359\|Ga0126376_11762066	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300010361\|Ga0126378_10305025	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1696	Open in IMG/M
3300010362\|Ga0126377_13280148	Not Available	523	Open in IMG/M
3300010375\|Ga0105239_12966338	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300010398\|Ga0126383_11973171	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	671	Open in IMG/M
3300010398\|Ga0126383_12361053	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300012971\|Ga0126369_13391063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	522	Open in IMG/M
3300012984\|Ga0164309_10540919	Not Available	899	Open in IMG/M
3300013104\|Ga0157370_11783287	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300013308\|Ga0157375_11142873	Not Available	912	Open in IMG/M
3300016270\|Ga0182036_10420301	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1045	Open in IMG/M
3300016270\|Ga0182036_11029257	Not Available	680	Open in IMG/M
3300016319\|Ga0182033_10809416	Not Available	826	Open in IMG/M
3300016319\|Ga0182033_12149649	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300016371\|Ga0182034_10837385	Not Available	789	Open in IMG/M
3300016387\|Ga0182040_10030245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3158	Open in IMG/M
3300016404\|Ga0182037_12157559	Not Available	501	Open in IMG/M
3300016445\|Ga0182038_11852077	Not Available	545	Open in IMG/M
3300017928\|Ga0187806_1039090	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1422	Open in IMG/M
3300017955\|Ga0187817_10025585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3543	Open in IMG/M
3300017961\|Ga0187778_10146055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1490	Open in IMG/M
3300017973\|Ga0187780_11010644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	606	Open in IMG/M
3300017975\|Ga0187782_11042842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	637	Open in IMG/M
3300018058\|Ga0187766_10216995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1212	Open in IMG/M
3300018058\|Ga0187766_10537043	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	791	Open in IMG/M
3300018060\|Ga0187765_10018488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3276	Open in IMG/M
3300018085\|Ga0187772_11138076	Not Available	573	Open in IMG/M
3300025911\|Ga0207654_10612062	Not Available	778	Open in IMG/M
3300025933\|Ga0207706_11473743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	556	Open in IMG/M
3300025934\|Ga0207686_10480727	All Organisms → cellular organisms → Bacteria	960	Open in IMG/M
3300025939\|Ga0207665_11208490	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	603	Open in IMG/M
3300025939\|Ga0207665_11228531	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	598	Open in IMG/M
3300025944\|Ga0207661_10759716	Not Available	892	Open in IMG/M
3300026078\|Ga0207702_12151649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	547	Open in IMG/M
3300026869\|Ga0207821_1021488	Not Available	637	Open in IMG/M
3300028807\|Ga0307305_10147660	All Organisms → cellular organisms → Bacteria	1085	Open in IMG/M
3300031573\|Ga0310915_10780293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	673	Open in IMG/M
3300031682\|Ga0318560_10168097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	1165	Open in IMG/M
3300031682\|Ga0318560_10315133	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	843	Open in IMG/M
3300031719\|Ga0306917_10136455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1806	Open in IMG/M
3300031719\|Ga0306917_10400693	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1071	Open in IMG/M
3300031719\|Ga0306917_11275269	Not Available	569	Open in IMG/M
3300031723\|Ga0318493_10116114	All Organisms → cellular organisms → Bacteria	1357	Open in IMG/M
3300031747\|Ga0318502_10730664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	599	Open in IMG/M
3300031748\|Ga0318492_10264804	Not Available	890	Open in IMG/M
3300031748\|Ga0318492_10293140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	846	Open in IMG/M
3300031763\|Ga0318537_10214037	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	717	Open in IMG/M
3300031764\|Ga0318535_10228762	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	832	Open in IMG/M
3300031764\|Ga0318535_10382316	Not Available	629	Open in IMG/M
3300031765\|Ga0318554_10570087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	639	Open in IMG/M
3300031771\|Ga0318546_10242388	Not Available	1239	Open in IMG/M
3300031771\|Ga0318546_11121015	All Organisms → cellular organisms → Bacteria → Terrabacteria group	553	Open in IMG/M
3300031771\|Ga0318546_11304175	Not Available	510	Open in IMG/M
3300031779\|Ga0318566_10313683	Not Available	776	Open in IMG/M
3300031782\|Ga0318552_10056661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1868	Open in IMG/M
3300031793\|Ga0318548_10329091	Not Available	750	Open in IMG/M
3300031796\|Ga0318576_10178382	All Organisms → cellular organisms → Bacteria	997	Open in IMG/M
3300031797\|Ga0318550_10599992	Not Available	529	Open in IMG/M
3300031797\|Ga0318550_10645175	Not Available	508	Open in IMG/M
3300031798\|Ga0318523_10324364	Not Available	768	Open in IMG/M
3300031821\|Ga0318567_10468188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715	Open in IMG/M
3300031879\|Ga0306919_11054865	Not Available	620	Open in IMG/M
3300031890\|Ga0306925_11121352	Not Available	794	Open in IMG/M
3300031890\|Ga0306925_12131985	Not Available	524	Open in IMG/M
3300031896\|Ga0318551_10353814	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	831	Open in IMG/M
3300031897\|Ga0318520_11071949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	510	Open in IMG/M
3300031942\|Ga0310916_10053586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3095	Open in IMG/M
3300031942\|Ga0310916_10538883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300031954\|Ga0306926_12592090	Not Available	553	Open in IMG/M
3300031954\|Ga0306926_12716959	Not Available	537	Open in IMG/M
3300032001\|Ga0306922_10987945	Not Available	869	Open in IMG/M
3300032009\|Ga0318563_10770463	Not Available	516	Open in IMG/M
3300032010\|Ga0318569_10445487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300032025\|Ga0318507_10383845	Not Available	612	Open in IMG/M
3300032041\|Ga0318549_10039707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii	1901	Open in IMG/M
3300032041\|Ga0318549_10246245	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	804	Open in IMG/M
3300032060\|Ga0318505_10438780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	617	Open in IMG/M
3300032065\|Ga0318513_10105882	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1319	Open in IMG/M
3300032066\|Ga0318514_10593583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300032068\|Ga0318553_10619238	Not Available	567	Open in IMG/M
3300032089\|Ga0318525_10421099	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300032205\|Ga0307472_100286296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1315	Open in IMG/M
3300032261\|Ga0306920_102736096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	673	Open in IMG/M
3300032783\|Ga0335079_10092085	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3439	Open in IMG/M
3300032828\|Ga0335080_10190747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2258	Open in IMG/M
3300032828\|Ga0335080_10838594	Not Available	947	Open in IMG/M
3300032828\|Ga0335080_11572404	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300032896\|Ga0335075_10399471	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → Streptomyces viridosporus → Streptomyces viridosporus ATCC 14672	1462	Open in IMG/M
3300032897\|Ga0335071_11005947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	780	Open in IMG/M
3300033158\|Ga0335077_10535759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Saccharopolyspora	1232	Open in IMG/M
3300033158\|Ga0335077_11626707	Not Available	613	Open in IMG/M
3300033158\|Ga0335077_11635750	All Organisms → cellular organisms → Bacteria → Terrabacteria group	611	Open in IMG/M
3300033289\|Ga0310914_11401427	Not Available	602	Open in IMG/M
3300033289\|Ga0310914_11548512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	566	Open in IMG/M
3300033289\|Ga0310914_11752456	Not Available	525	Open in IMG/M
3300033290\|Ga0318519_10203476	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1130	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	91.67%
Host-Associated	Host-Associated	8.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.81%
Plants	Host-Associated → Plants	8.33%
Aquatic	Environmental → Aquatic	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.81%
Rhizosphere	Host-Associated → Plants → Rhizosphere	5.56%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.78%
Freshwater	Environmental → Aquatic → Freshwater	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	67.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	14.81%
Loam	Environmental → Terrestrial → Soil → Loam	7.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.63%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	14.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.04%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	37.04%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	16.67%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.26%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	8.33%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	6.48%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.93%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2189573003	Grass soil microbial communities from Rothamsted Park, UK - FE2 (NaCl 30g/L 5ml)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017955	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026869	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 53 (SPAdes)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FE2_05221020	2189573003	Grass Soil	LQADRPGAFVSVLRHALGPADGHGPGALGPEPGAPLLVDTSRERLPAAADLLGEPAGPN
Ga0066395_103989722	3300004633	Tropical Forest Soil	DAFVKVLLHALEPAGDQGPGALGAELGAPLLVDSSRDRLPAAADVLRGDSAGMS*
Ga0066388_1006194892	3300005332	Tropical Forest Soil	LVKVLLHALEPADGQAPGALEAELGVPLLVVSSREWLPAAAGLLRAEVPGG*
Ga0068868_1005957011	3300005338	Miscanthus Rhizosphere	KVLLHALEPPGDQAPGALEAGLGAPLLVDTSRERLPAAADVLRA*
Ga0008090_133935521	3300005363	Tropical Rainforest Soil	VDRPDAFVKVLLHTLEPADDQGPGALEAELDAPLLVDSSRERLPAAADVLNAKPSAGPN*
Ga0070713_1013409641	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	DRPDAFVAALLHALGPAGGQGPGPLGPEPGAPLLIDTSCERLPAAADLLRTEDPASTN*
Ga0070711_1001892581	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	DRPDAFVKVLLHALEPPGDQAPGALEAGLGAPLLVDTSRERLPAAADVLRA*
Ga0068856_1018936063	3300005614	Corn Rhizosphere	DRPDAFVKVLLHALEPRGDQAPGALEAGLGAPLLVDTSRERLPAAADVLRA*
Ga0126374_114473262	3300009792	Tropical Forest Soil	YFIPDANHYLHVDRPDAFVKVLLHTLEPADDQEPGALETELGAPLLVDSSRERLPNAADVLRLEDPRA*
Ga0126380_107864971	3300010043	Tropical Forest Soil	RPDAFVTVLLHALGPDDHHGPGPLGPEPGAPLLVDTSRERLPAAADLLGAEDPAHTN*
Ga0126380_118508262	3300010043	Tropical Forest Soil	DRPDAVVKVLLHALEPADRQGPGALGAELGAPLLVDSSRERLPAAADVLRAETPADTN*
Ga0126370_115026471	3300010358	Tropical Forest Soil	DAFVKVLLHALEPADDHGPGALEPELGAPLLVDSSRGRLPAAADVLHAQASGTN*
Ga0126376_117620662	3300010359	Tropical Forest Soil	PDAFVKVLLHTLEPADDQEPGALETELGAPLLVDSSRERLPNAADVLRVEDPAGAPRA*
Ga0126378_103050251	3300010361	Tropical Forest Soil	ALGPADGQGPGALGPEPGAPLLVDTSRERLPAAADLLRAEDPASTS*
Ga0126377_132801481	3300010362	Tropical Forest Soil	LHAFGPDGDHGPGPLGPEPGAPLLVDTSRERLPAAADLLGSEDPVGTN*
Ga0105239_129663382	3300010375	Corn Rhizosphere	GAFVEVLLHTLEPTDDQGPGPLNPELAAPLFVDASRERLPAAADLLRAQAPAGTG*
Ga0126383_119731711	3300010398	Tropical Forest Soil	LQVDRPDAFVKVLLHALEPRGGQGPGALEAGLGAPLLVDTSRERLPAAADVLRA*
Ga0126383_123610533	3300010398	Tropical Forest Soil	YLQVDRPDAFVKVLVHALGPADDQGPGALEAGLGAPLLVDSSRERLPAAADVLSAGAP*
Ga0126369_133910631	3300012971	Tropical Forest Soil	LQADRPDAFVKVLLHALGPAGVQEPGALEAELGAPLLVDSSRERLPAAADLLPPA*
Ga0164309_105409192	3300012984	Soil	FVKVLLHALEPPGDQAPGALEAGLGAPLLVDTSRERLPAAADVLRA*
Ga0157370_117832872	3300013104	Corn Rhizosphere	YLQVDRPDAFVKVLMHALEPPGDQAPGALEAGLGAPLLVDTSRERLPAAADVLRSTSHRL
Ga0157375_111428732	3300013308	Miscanthus Rhizosphere	VDRPDAFVKVLLHALEPPGDQAPGALEAGLGAPLLVDTSRERLPAAADVLRSTSHRL*
Ga0182036_104203012	3300016270	Soil	FVKVLLHTLDPAADQGPGALEAELDAPLLVDSSRERLPAAADVLHA
Ga0182036_110292572	3300016270	Soil	PDAFVKVLLHTLEPTADQGPGALEPELGAPLLVDSSRERLPAAADVLRAQPPAVSN
Ga0182033_108094162	3300016319	Soil	VLLHTLEPTADQGPGALEPELGAPLLVDSSRERLPAAADVLRAQPPAVSN
Ga0182033_121496492	3300016319	Soil	FVKVLRHALEPVGDQAPGALEPGLGAPLLVDSSRERLPAAADVLRVQTPA
Ga0182034_108373851	3300016371	Soil	NDRPDAFVKVLLHALDAGSDQGPGALEAELGAPLLVDSSRERLPAAADLLRAEAPAGAG
Ga0182040_100302453	3300016387	Soil	GAFVKVLLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0182037_121575591	3300016404	Soil	NDRPDAFVKVLLHTLEPADDQGPGALEPELGAPLLVDSSRERLPVAADLLRAELPAG
Ga0182038_118520772	3300016445	Soil	NHYLQVDRPDAFAKVLLHALEPADDQGPGALDVAPGAPLLVDSSRQRLQTAADLIRTQRS
Ga0187806_10390901	3300017928	Freshwater Sediment	FVRVLLHALDPAGDQGPGALGAEPDAPILVDTSRARLPAAADLLGVQPPGDAT
Ga0187817_100255854	3300017955	Freshwater Sediment	QVDRPDAFVRVLLHALEPAAEQRIGALWAEPGAPLLVDSSRQRLPVAADVLRAAVPPQ
Ga0187778_101460551	3300017961	Tropical Peatland	PDAFVKVLLHALDTAGGQEPGALEAERGAPLLVDSSREQLPSAGDQLRGCAAA
Ga0187780_110106442	3300017973	Tropical Peatland	DRPDAFVKVLLHALEPAENQAPGALEAELGAPLLVDSSRERLPAAADVLRMEAPAGTN
Ga0187782_110428421	3300017975	Tropical Peatland	DANHYLQVDRPDAFVKVLLHALESGDQAPGALGAEPGAPLLVDSSRERLPAAADLLRAEAPRPGS
Ga0187766_102169953	3300018058	Tropical Peatland	VKVLLHALEPAENQAPGALEAELGAPFLIDSSRERLPAAADVLRMEAPAGTN
Ga0187766_105370432	3300018058	Tropical Peatland	LHTLEPAEDQGPGALEPELDAPLLVDSSREQLPAAADVLRAEPPANTN
Ga0187765_100184884	3300018060	Tropical Peatland	DAFVKVLLHALEPADDQGPGALEVELGAPLLVDSSRERLPAAADLLRLDAPTGTN
Ga0187772_111380761	3300018085	Tropical Peatland	HYLQVDRPDAFVKVLLHALEPADGQPPGALEPELGSPLLVDTSRERLPAAADVLRGEPPAGTN
Ga0207654_106120622	3300025911	Corn Rhizosphere	LLHALEPRGDQAPGALEAGLGAPLLVDTSRDRLPAAADVLRA
Ga0207706_114737431	3300025933	Corn Rhizosphere	YLQVDRPEAFVKVLLHALEPADDLGPGALEAELGAPLLVDSSRERLPAAADQLRVQAPAG
Ga0207686_104807272	3300025934	Miscanthus Rhizosphere	VKVLLHALEPRGDQAPGALEAGLGAPLLVDTSRERLPAAADVLRSTSHRL
Ga0207665_112084901	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DAFVTVLLHALEPADDQGPGALEAGLGAPLLVDSSRERLPAAADLLPMAAPPA
Ga0207665_112285312	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	DAFVTVLLHALEPADDQGPGALEAGLGAPLLVDSSRERLPAAADLLPMGAPPA
Ga0207661_107597162	3300025944	Corn Rhizosphere	FVKVLLHALEPRDDQAPGALEAGLGAPLLVDTSRDRLPAAADVLRA
Ga0207702_121516492	3300026078	Corn Rhizosphere	PDAFVTVLLHALEPADGQGPGALEAGLGAPLLVDSSRERLPAAADLLPMAAPPA
Ga0207821_10214881	3300026869	Tropical Forest Soil	VKVLLHALEPAGGQGPGALGPELGAPLLVDSSRERLPAAADVLRGEAPAGTN
Ga0307305_101476601	3300028807	Soil	KVLLHALEPADDQGPGALEAELGAPLLVDSSRERLPAAADQLRVQAPAGQ
Ga0310915_107802932	3300031573	Soil	FVKVLLHTLEPADDQGPGALEAELGSPLLVDSSREQLPAAADVLRAEAPAG
Ga0318560_101680971	3300031682	Soil	NHYLQVDRPDAFVKVLLHALEPAGDQAPGALAAELGAPLLVDNSRERLPSAADLLRL
Ga0318560_103151332	3300031682	Soil	LLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0306917_101364552	3300031719	Soil	AFVKVLLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0306917_104006932	3300031719	Soil	NHYLQVDRPGAFVKVLLHTLDPAADQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0306917_112752691	3300031719	Soil	LDRPDTFVKVLRHTLQVSDEQPPGPLDSELGAALLVDASRERLPAAEDLLRGDGPTAVN
Ga0318493_101161141	3300031723	Soil	LNTLEPAADQGPGALEAALDAPLLIDSSRERLPAAADVLRAKPSAGPN
Ga0318502_107306642	3300031747	Soil	VDRPGAFVKVLLHTLDPAAGQAPGALEAELGSPLLVDSSREQLPAAADVLHAEAPAD
Ga0318492_102648041	3300031748	Soil	KVLLNTLEPAADQGPGALEAELDAPLLVDSSRERLPAAADVLRAEPSADPD
Ga0318492_102931402	3300031748	Soil	PDAFVKVLLHTLDPAADQGPGALEAELDAPLLVDSSRERLPAAADVLHA
Ga0318537_102140372	3300031763	Soil	PDAFVKVLLHTLEPADDQGPGALEAELGSPLLVDSSREQLPAAADVLRAEAPAG
Ga0318535_102287623	3300031764	Soil	KVLLHALGPADGQGPGALEPEPGAPLLVDTSRERLSAAADLLRAEDPAGPD
Ga0318535_103823161	3300031764	Soil	LNTLEPAADQGPGALEAELDAPLLVDSSRERLPAAADVLRAEPSAGPN
Ga0318554_105700871	3300031765	Soil	VDRPDAFVTVLHHALEPAGVQEPGALAAELGAPLLVDSSRERLPAAADLLPPA
Ga0318546_102423882	3300031771	Soil	ADRPDAFVEVLLHALEPADSHGPGPLGPEPGAPLLVDTSRERLPTAADLLRAEDTARTN
Ga0318546_111210151	3300031771	Soil	KVLLHALDPAEGQGPGALDAALGAPLLIDSSRERLQAAADLLGTPAPADTN
Ga0318546_113041751	3300031771	Soil	VLLHALEPQGGQGPGALEAGLGAPLLVDTSRERLPAAADLLIAEALPHTS
Ga0318566_103136832	3300031779	Soil	VLLHALEPAGGQGPGALGPELGAPLLVDSSRERLPAAADVLRGEAPADTN
Ga0318552_100566613	3300031782	Soil	KVLLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0318548_103290912	3300031793	Soil	TLEPAADQGPGALEAALDAPLLVDSSRERLPAAADVLRAEPSADPD
Ga0318576_101783821	3300031796	Soil	LQNDRPDAFVKVLLHALDADSDQGPGALEAELGAPLLVDSSRERLPAAADLLRAEAPAGA
Ga0318550_105999921	3300031797	Soil	LNTLEPAADQGPGALEAELDAPLLVDSSRERLPAAADVLRAKPSAGPN
Ga0318550_106451751	3300031797	Soil	KVLLNTLEPAADQGPGALEAALDAPLLVDSSRERLPAAADVLRAEPSAGPN
Ga0318523_103243642	3300031798	Soil	NDRPDAFVKVLLHALDADSDQGPGALEAELGAPLLVDSSRERLPAAADLLRAEAPAGAG
Ga0318567_104681881	3300031821	Soil	VQVDRPDAFVSALLHALEPADDQVPGALAPELGAPILVDSSREKLPASADLLGGGAS
Ga0306919_110548651	3300031879	Soil	LRHTLEPTADQGPGALEPELGAPLLVDSSRERLPAAADVLRAQPPAVSN
Ga0306925_111213521	3300031890	Soil	RPDAFVKVLLHALDADSDQGPGALEAELGAPLLVDSSRERLPAAADLLRAEAPAGAG
Ga0306925_121319852	3300031890	Soil	RPDAFVKVLLNTLEPAADQGPGALEAELDAPLLVDSSRERLPAAADVLRAEPSAGPN
Ga0318551_103538142	3300031896	Soil	HYLQVDRPDAFVKVLLHALEPTADQGPGALEAELGAPLLVDSSRERLPAAADVLRAQPPANPN
Ga0318520_110719492	3300031897	Soil	VLHHALEPAGVQEPGALAAELGAPLLVDSSRERLPAAADLLPPA
Ga0310916_100535861	3300031942	Soil	RPGAFVKVLLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0310916_105388831	3300031942	Soil	KVLLHTLEPTADQGPGALEPELGAPLLVDSSRERLPAAADVLRAQPPAVSN
Ga0306926_125920902	3300031954	Soil	NHYLQADRPDAFATALLHALGPAGDHGPGPLGPEPGAPLLVDTSRERLPAAADLLRAAHPAGPS
Ga0306926_127169592	3300031954	Soil	FVKVLLHALDADSDQGPGALEAELGAPLLVDSSRERLPAAADLLRAEAPAGAG
Ga0306922_109879451	3300032001	Soil	HYLQVDRPDAFVKVLLNTLEPAADQGPGALEAELDAPLLVDSSRERLPAAADVLRAEPSADPD
Ga0318563_107704631	3300032009	Soil	VKVLLHALGPADGQGPGALGPEPGAPLLIDTSRERLPTAADLLRAEDAVGTN
Ga0318569_104454871	3300032010	Soil	VLLHTLEPADDQGPGALEAELGSPLLVDSSREQLPAAADVLRAEAPAG
Ga0318507_103838452	3300032025	Soil	TLEPAADQGPGALEAELDAPLLVDSSRERLPAAADVLRAEPSADPD
Ga0318549_100397073	3300032041	Soil	AFVKVLLHTLDPAADQGPGALEAELDAPLLVDSSRERLPAAADVLHA
Ga0318549_102462451	3300032041	Soil	VKVLLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0318505_104387802	3300032060	Soil	LQVDRPDAFVKVLLHTLDPAADQGPGALEAELDAPLLVDSSRERLPAAADVLHA
Ga0318513_101058822	3300032065	Soil	VLLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0318514_105935832	3300032066	Soil	VKVLLHTLDPAADQGPGALEAELDAPLLVDSSRERLPAAADVLHA
Ga0318553_106192382	3300032068	Soil	QNDRPDAFVKVLLHALDADSDQGPGALEAELGAPLLVDSSRERLPAAADLLRAEAPAGAG
Ga0318525_104210991	3300032089	Soil	DAFVKVVLHALDPAADQAPGALEAELGAPLLVDSSRERLPAAADVLRAEAPAG
Ga0307472_1002862961	3300032205	Hardwood Forest Soil	PDAFVTVLLHALEPADDQGPGALEAGLGAPLLVDSSRERLPAAADLLPMGPPPA
Ga0306920_1027360961	3300032261	Soil	PDAFVKVLLHTLEPAADQGPGALEAELDAPLLVDSSRERLLAAADVLRAEPSAGPN
Ga0335079_100920855	3300032783	Soil	LLHALGPADDQAPGPLGPEPGAPLLVDTSRERLPAAADLLRAEDPAHTS
Ga0335080_101907476	3300032828	Soil	QVDRPDAFVKVLLHALEPADDQVPGALEAALGAPLLVDSSRERLPAAADLLRADAPADTT
Ga0335080_108385943	3300032828	Soil	FVKVLLHALGPADDQRPGALQPEPGAPLLVDTSRERLPAAADLLRAEDPADMN
Ga0335080_115724042	3300032828	Soil	DAFVKVLLHALGPADDHGPGPLGPEPGTPLLVDTSRERLPTAADLLRAEDPADTN
Ga0335075_103994711	3300032896	Soil	FAQVLEHALHPADDQHPGALGAGPGAPILVDSSRTRLPAAADLLRADVS
Ga0335071_110059471	3300032897	Soil	DAFVQVLLHALGPADRAPGPLGPEPGAPLLVDTSRERLPTAVDLLRADPAGTN
Ga0335077_105357591	3300033158	Soil	VDRPDAFVKVLLHALEPADDQVPGALEAALGAPLLVDSSRERLPAAADLLRADAPADTT
Ga0335077_116267072	3300033158	Soil	RPDAFVKVLRHALEPADGQAPGALGAELGAPLLVDSSRERLPAAADVLRGPAPPA
Ga0335077_116357501	3300033158	Soil	LQVDRPDAFVKVLLHVLEPADDQAPGALDAELGAPLLIDSSRERLPAAADLLRVADPAGTSRP
Ga0310914_114014271	3300033289	Soil	HALGPADGQGPGALGPEPGAPLLADTSRERLPAAADLLRAQDPAHTN
Ga0310914_115485121	3300033289	Soil	PGAFVKVLLHTLDPAAGQAPGALEAELGAPLLVDSSREQLPAAADVLHAEAPAD
Ga0310914_117524561	3300033289	Soil	DRPDAFVKVLLHALEPQGGQGPGALEAGLGAPLLVDTSRERLPAAADLLSAEALPHTS
Ga0318519_102034763	3300033290	Soil	VKVLLHALGPADGQGPGALEPEPGAPLLVDTSRERLSAAADLLRAEDPAGPD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091063

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences