Metagenome / Metatranscriptome Family F091023

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F091023
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	82 residues
Representative Sequence	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYSVSVDVGESDRRILEVLDAIHEHVEKGHSLTRVEMDGRRYSINPTDT
Number of Associated Samples	73
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	61.90 %
% of genes near scaffold ends (potentially truncated)	39.81 %
% of genes from short scaffolds (< 2000 bps)	87.04 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.36

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (63.889 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (51.852 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.93% β-sheet: 19.82% Coil/Unstructured: 52.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.36
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.36
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF13581	HATPase_c_2	29.63
PF01544	CorA	6.48
PF13466	STAS_2	6.48
PF10011	DUF2254	2.78
PF00805	Pentapeptide	1.85
PF05532	CsbD	1.85
PF09954	DUF2188	1.85
PF00589	Phage_integrase	0.93
PF08885	GSCFA	0.93
PF00106	adh_short	0.93
PF09843	DUF2070	0.93
PF13458	Peripla_BP_6	0.93
PF11431	Transport_MerF	0.93
PF05593	RHS_repeat	0.93
PF03706	LPG_synthase_TM	0.93
PF13533	Biotin_lipoyl_2	0.93
PF05872	HerA_C	0.93
PF14354	Lar_restr_allev	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	6.48
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	1.85
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	1.85
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	Replication, recombination and repair [L]	0.93
COG3209	Uncharacterized conserved protein RhaS, contains 28 RHS repeats	General function prediction only [R]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
All Organisms	root	All Organisms	36.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
cellular organisms	root	All Organisms → cellular organisms	36.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	36.11 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	29.63 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	22.22 %
Candidatus Dormibacteraeota	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota	1.85 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	13.89 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.85 %
unclassified Candidatus Dormibacteraeota	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota	1.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.93 %
Nitriliruptoria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	12.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %
Nitriliruptorales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.85 %
Nitriliruptoraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.85 %
Nitriliruptor	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	63.89 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	12.96 %
Candidatus Dormibacteraeota bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	1.85 %
Nitriliruptor alkaliphilus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	0.93 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.93 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1192758	Not Available	1003	Open in IMG/M
2140918013\|NODE_138915_length_1003_cov_7.633101	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1035	Open in IMG/M
2140918013\|NODE_490757_length_2221_cov_8.641152	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2253	Open in IMG/M
2228664021\|ICCgaii200_c0613558	Not Available	1144	Open in IMG/M
2228664021\|ICCgaii200_c0958937	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	599	Open in IMG/M
2228664021\|ICCgaii200_c0959062	Not Available	959	Open in IMG/M
2228664022\|INPgaii200_c0913084	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	771	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0738393	Not Available	737	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0739364	All Organisms → cellular organisms → Bacteria	1201	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0740824	Not Available	1562	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_10791096	Not Available	666	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11273976	Not Available	801	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11274791	Not Available	835	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11274887	Not Available	693	Open in IMG/M
3300000890\|JGI11643J12802_10161267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1342	Open in IMG/M
3300000890\|JGI11643J12802_11457917	Not Available	550	Open in IMG/M
3300000890\|JGI11643J12802_11691273	Not Available	1003	Open in IMG/M
3300000955\|JGI1027J12803_104913346	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1329	Open in IMG/M
3300000956\|JGI10216J12902_100905191	All Organisms → cellular organisms → Bacteria	2054	Open in IMG/M
3300000956\|JGI10216J12902_100924068	Not Available	742	Open in IMG/M
3300000956\|JGI10216J12902_101555233	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2468	Open in IMG/M
3300000956\|JGI10216J12902_104803263	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1050	Open in IMG/M
3300000956\|JGI10216J12902_109566515	All Organisms → cellular organisms → Bacteria	1956	Open in IMG/M
3300001139\|JGI10220J13317_10132135	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1264	Open in IMG/M
3300001431\|F14TB_100746551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1085	Open in IMG/M
3300004114\|Ga0062593_100003274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	6198	Open in IMG/M
3300004114\|Ga0062593_100474971	Not Available	1149	Open in IMG/M
3300004114\|Ga0062593_101568403	Not Available	713	Open in IMG/M
3300004156\|Ga0062589_100811182	Not Available	849	Open in IMG/M
3300004157\|Ga0062590_100139746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1634	Open in IMG/M
3300004157\|Ga0062590_100265645	Not Available	1305	Open in IMG/M
3300004157\|Ga0062590_100673414	Not Available	926	Open in IMG/M
3300004157\|Ga0062590_101163995	Not Available	749	Open in IMG/M
3300004463\|Ga0063356_100826856	Not Available	1296	Open in IMG/M
3300004463\|Ga0063356_101749904	All Organisms → cellular organisms → Bacteria	931	Open in IMG/M
3300004463\|Ga0063356_102714583	Not Available	762	Open in IMG/M
3300004463\|Ga0063356_104083516	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300004463\|Ga0063356_104822836	Not Available	580	Open in IMG/M
3300004479\|Ga0062595_100255057	Not Available	1141	Open in IMG/M
3300004479\|Ga0062595_101055964	All Organisms → cellular organisms → Bacteria	705	Open in IMG/M
3300004480\|Ga0062592_100724248	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	869	Open in IMG/M
3300005338\|Ga0068868_100708661	Not Available	901	Open in IMG/M
3300005338\|Ga0068868_101344361	Not Available	665	Open in IMG/M
3300005340\|Ga0070689_101761208	Not Available	564	Open in IMG/M
3300005356\|Ga0070674_101940430	Not Available	535	Open in IMG/M
3300005437\|Ga0070710_11291823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	542	Open in IMG/M
3300005456\|Ga0070678_100337478	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1292	Open in IMG/M
3300005529\|Ga0070741_10018665	All Organisms → cellular organisms → Bacteria	11195	Open in IMG/M
3300005543\|Ga0070672_100783862	Not Available	838	Open in IMG/M
3300005614\|Ga0068856_101343036	Not Available	730	Open in IMG/M
3300006854\|Ga0075425_100685023	Not Available	1178	Open in IMG/M
3300006871\|Ga0075434_100512781	Not Available	1220	Open in IMG/M
3300006881\|Ga0068865_101331721	Not Available	639	Open in IMG/M
3300006904\|Ga0075424_100749477	Not Available	1042	Open in IMG/M
3300009094\|Ga0111539_12139638	Not Available	649	Open in IMG/M
3300009098\|Ga0105245_10162741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2119	Open in IMG/M
3300009148\|Ga0105243_10117421	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2236	Open in IMG/M
3300009174\|Ga0105241_10376960	Not Available	1238	Open in IMG/M
3300009176\|Ga0105242_10072419	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2862	Open in IMG/M
3300009553\|Ga0105249_10971691	Not Available	917	Open in IMG/M
3300009553\|Ga0105249_11459450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	756	Open in IMG/M
3300010041\|Ga0126312_11319564	Not Available	534	Open in IMG/M
3300010147\|Ga0126319_1091713	Not Available	965	Open in IMG/M
3300010375\|Ga0105239_10904939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1013	Open in IMG/M
3300012911\|Ga0157301_10194748	Not Available	678	Open in IMG/M
3300012911\|Ga0157301_10276918	Not Available	602	Open in IMG/M
3300012914\|Ga0157297_10429249	Not Available	537	Open in IMG/M
3300012984\|Ga0164309_11224344	Not Available	631	Open in IMG/M
3300012986\|Ga0164304_10418233	Not Available	957	Open in IMG/M
3300013102\|Ga0157371_10674337	Not Available	773	Open in IMG/M
3300013296\|Ga0157374_10244487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Nitriliruptoria → Nitriliruptorales → Nitriliruptoraceae → Nitriliruptor → Nitriliruptor alkaliphilus	1765	Open in IMG/M
3300013308\|Ga0157375_11079291	Not Available	939	Open in IMG/M
3300014325\|Ga0163163_13217574	Not Available	509	Open in IMG/M
3300014745\|Ga0157377_10573551	Not Available	801	Open in IMG/M
3300015077\|Ga0173483_10038605	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1776	Open in IMG/M
3300015371\|Ga0132258_10175390	All Organisms → cellular organisms → Bacteria	5173	Open in IMG/M
3300015371\|Ga0132258_11868225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1513	Open in IMG/M
3300015371\|Ga0132258_12152019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1401	Open in IMG/M
3300015372\|Ga0132256_102080337	Not Available	673	Open in IMG/M
3300015373\|Ga0132257_103722737	Not Available	555	Open in IMG/M
3300017792\|Ga0163161_10794461	All Organisms → cellular organisms → Bacteria → Terrabacteria group	795	Open in IMG/M
3300017792\|Ga0163161_11166362	Not Available	665	Open in IMG/M
3300018081\|Ga0184625_10161844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1170	Open in IMG/M
3300019361\|Ga0173482_10010509	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	2373	Open in IMG/M
3300019362\|Ga0173479_10059820	Not Available	1283	Open in IMG/M
3300022756\|Ga0222622_10071591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2042	Open in IMG/M
3300022756\|Ga0222622_10607025	Not Available	790	Open in IMG/M
3300022898\|Ga0247745_1049648	Not Available	661	Open in IMG/M
3300023266\|Ga0247789_1086678	Not Available	612	Open in IMG/M
3300025915\|Ga0207693_11384873	Not Available	523	Open in IMG/M
3300025931\|Ga0207644_11219854	Not Available	632	Open in IMG/M
3300025933\|Ga0207706_10517793	Not Available	1029	Open in IMG/M
3300025935\|Ga0207709_10912809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	714	Open in IMG/M
3300025937\|Ga0207669_11484735	Not Available	578	Open in IMG/M
3300025944\|Ga0207661_11356751	Not Available	653	Open in IMG/M
3300025961\|Ga0207712_11089770	Not Available	711	Open in IMG/M
3300025961\|Ga0207712_11790359	Not Available	550	Open in IMG/M
3300026023\|Ga0207677_10985136	Not Available	764	Open in IMG/M
3300026089\|Ga0207648_12131154	Not Available	521	Open in IMG/M
3300028381\|Ga0268264_10844686	Not Available	917	Open in IMG/M
3300028784\|Ga0307282_10293797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Candidatus Dormibacteraeota → unclassified Candidatus Dormibacteraeota → Candidatus Dormibacteraeota bacterium	783	Open in IMG/M
3300028828\|Ga0307312_10911062	Not Available	583	Open in IMG/M
3300028875\|Ga0307289_10434174	Not Available	540	Open in IMG/M
3300031058\|Ga0308189_10521639	Not Available	515	Open in IMG/M
3300031091\|Ga0308201_10022343	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1343	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	58.33%
Host-Associated	Host-Associated	41.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.63%
Plants	Host-Associated → Plants	41.67%
Aquatic	Environmental → Aquatic	3.70%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.15%
Rhizoplane	Host-Associated → Plants → Rhizoplane	17.59%
Sediment	Environmental → Aquatic → Sediment	2.78%
Freshwater	Environmental → Aquatic → Freshwater	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	50.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	17.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	12.96%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.56%
Loam	Environmental → Terrestrial → Soil → Loam	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.78%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.93%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	22.22%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	17.59%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.81%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	12.96%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	12.96%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.56%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.70%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.93%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	22.22%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.96%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	11.11%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	4.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	4.63%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	4.63%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.70%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.70%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.78%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.93%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2228664022	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001139	Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010147	Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300023266	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025944	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_12038370	2124908045	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVGKGHSLTRVEMDGRRYNINPTNT
Iowa-Corn-GraphCirc_01645520	2140918013	Soil	MRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRAYTVPPKT
Iowa-Corn-GraphCirc_01549450	2140918013	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYSVSVDVGQSDRRILEVVDAIHEHVENGHSLTRVEMDGRRYSHQPDQHLAEPRPP
ICCgaii200_06135581	2228664021	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGGSSDGYFVSVDVGGSDRRVLVVLDAIHEHVDKGHTLTRVELDGHAYTVRPT
ICCgaii200_09589371	2228664021	Soil	MRAFTIKAKTLDSAQSLFEALRRFHPALSSTSNDGYSVSVEVGESDRRILEVLDAIHKHVEKGHGLTRVEMDGRQYTINPTDT
ICCgaii200_09590621	2228664021	Soil	MRAFTIKTKTLNSAESVFDALRRFDPVLESESYSVSVDVGGSDRRILEVLDAIYEHVENGHSFTRVELDRRQYTINPTDT
INPgaii200_09130842	2228664022	Soil	MRRFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRA
ICChiseqgaiiDRAFT_07383932	3300000033	Soil	MRAFTIKAKTLDSAQSLFDALRRFDPALSGTSSDGYSVSVDVGXXDXRILEVXDAIHXHVEXGHSLTRVEMDGRRYSHQPDQHLAEPRPP*
ICChiseqgaiiDRAFT_07393642	3300000033	Soil	MRXFXIXAKTLDSAQSLFDALRRFDPALGGTSRDGYSVSVDVGQSDRRILEVVDAIHEHVENGHSLTRVEMDGRRYSHQPDQHLAEPRPP*
ICChiseqgaiiDRAFT_07408242	3300000033	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGGSSDGYFVSVDVGGSDRRVLVVLDAIHEHVDKGHTLTRVELDGHAYTVRPT*
ICChiseqgaiiFebDRAFT_107910962	3300000363	Soil	MRAFTIKTKTLNSAESVFDALRRFDPVLESESYSVSVDVGGSDRRILEVLDAIYEHVENGHSFTRVELDRRQYTINPTDT*
ICChiseqgaiiFebDRAFT_112739762	3300000363	Soil	MIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRAYTVPPKT*
ICChiseqgaiiFebDRAFT_112747912	3300000363	Soil	MRAFTITAKTLDSAQSLFDALRRFDPALGGTSRDGYSVSVDVGESDRRILEVLDAIHEHVEKGHSLTRVEMDGRRYSINPTDT*
ICChiseqgaiiFebDRAFT_112748872	3300000363	Soil	MRAFTIKAKTLDSAQSLFDALRRFDPALSGTSSDGYSVSVDVGESDRRILEVLDAIHEHVEKGHSLTRVEMDGRRYSINPTDT*
JGI11643J12802_101612673	3300000890	Soil	MRAFTIKAKTLDSAQSLFEALRRFHPALSSTSNDGYSVSVEVGESDRRILEVLDAIHKHVEKGHGLTRVEMDGRQYTINPTDT*
JGI11643J12802_114579171	3300000890	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYSVSVDVGESDRRILEVLDAIHEHVEKGHSLTRVEMDGRRYSINPTDT*
JGI11643J12802_116912731	3300000890	Soil	MRAFTIKTKTLNSAESVFDALRRFDPVLESESYSVSVDVGGSDRRILEVLDAIYEHVENGHSFTRVELDRRQYT
JGI1027J12803_1049133461	3300000955	Soil	SLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRAYTVRQPKT*
JGI10216J12902_1009051912	3300000956	Soil	MRSFTVKAKTLESAQSLFDALRRFDPALEGSASEGYSVSVDVGANDRRLLDVLDAIQQHVHERDDAARVVLDGRKYTVYPA*
JGI10216J12902_1009240682	3300000956	Soil	MRAFTMKAKTLDSAQSLFDALRRFDPALEGNASEGYSVSVDVGANDRRLLDVLDAIHQHVQERDDPAGVELDGRKYTVHPE*
JGI10216J12902_1015552337	3300000956	Soil	MLAFTIKAKTHESAQSLFDALRRFDPALGGTAGDGFFVSVDVGDERRILEVLDAIHEHVQKGHTLTRVELDGREYTVHPNT*
JGI10216J12902_1048032632	3300000956	Soil	MIEAKSLQSAQSLFEALRRFDPALGGSPRDGYVVSVDVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRAYTVRQPKT*
JGI10216J12902_1095665154	3300000956	Soil	MRAFTVKAKSLDSAQTLFDALRRFDPALEGSTSEGYSVSLDVGANDRRLLDVLEAIHKHVQERDDPAGVELDGRKYTVHPE*
JGI10220J13317_101321353	3300001139	Soil	RSASEECSALIEWACPGGNCSYRLTTSVREVTMRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT*
F14TB_1007465513	3300001431	Soil	MRRFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHEHVEKGHSLTRVEMDGRQYTINPTDT*
Ga0062593_1000032746	3300004114	Soil	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQHVHEGNDMARVELDGRKYTVFPRQ*
Ga0062593_1004749712	3300004114	Soil	MRVFTITAKTLDSAQSLFDALRRFDPALGGTSRDGYSVSVDVGESDRRILEVLDAIHEHVEKGHSLVRVQVDGRQYTIKPTNTPSTRPNT*
Ga0062593_1015684031	3300004114	Soil	MRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRAYTVRAPTKT*
Ga0062593_1025366222	3300004114	Soil	MRAFTIKAKTLDSAQSLFDALRRFDPALGGTSSDGYSVSVDVGESDRRILEVLDAIHQHVEKGH
Ga0062589_1008111821	3300004156	Soil	MRVFTITAKTLDSAQSLFDALRRFDPALGGTSSDGYSVSVDVGESDRRILEVLDAIHEHVEKGHSLVRVQVDGRQYTIKPTNTPSTRPNT*
Ga0062590_1001397461	3300004157	Soil	MRAFTIKAKTLDSAQSLFDALRRFDPALGGTSSDGYSVSVDVGESDRRILEVLDAIHQHVEKGHSLTRVEID
Ga0062590_1002656451	3300004157	Soil	LAANLGANVAVRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQHVHEGNDMARVELDGRKYTVFPRQ*
Ga0062590_1006734141	3300004157	Soil	VRAFTIKAKSLESAQSLFDALRRFDPALERTSSDGYSVSVNVGESERRILEVLDAIHEHVEKGHSLTRLELDGRQYTILPTDT*
Ga0062590_1011639952	3300004157	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT*
Ga0063356_1008268561	3300004463	Arabidopsis Thaliana Rhizosphere	MRAFTIKTKTLNSAESVFDALRRFDPVLESESYSVSVDVGGSDRRILEVLDAIYEHVE
Ga0063356_1017499043	3300004463	Arabidopsis Thaliana Rhizosphere	MRAFTIKAKTLDSAQSLFDALRRFSPALAGTSSDGYSVSVDVGESDRRILEVLDAIHEHVENGHSLVRVQVDDRQYTIKPTKTPSTRPNT*
Ga0063356_1027145831	3300004463	Arabidopsis Thaliana Rhizosphere	MRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVAVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRAYTVPPKT*
Ga0063356_1040835162	3300004463	Arabidopsis Thaliana Rhizosphere	RNDLRVDQCPREMRSFTITAKTRESAQSLFDALQRFDPSFGSSSRDSYFVSVDVGGNDRRILEVLDAIHEHVEQGHALTRVEVDGRGYTVRPDR*
Ga0063356_1048228362	3300004463	Arabidopsis Thaliana Rhizosphere	VKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQHVHEGNDMARVELDGRKYTVFPRQ*
Ga0062595_1002550572	3300004479	Soil	VRAFTIKAKSLESAQSLFEALRRFDPSLGGSPSEGYSVSVDVGESDRRILEVLDAIHEHVHERHSLTRDELDERKYAVHPTNT*
Ga0062595_1010559642	3300004479	Soil	MRAFTIKAKTLDSAQSLFDALRRFDPALGGTSSDGYSVSVDVGESDRRILDVLDAIHQHVEKGHSLTRVEIDGRHTIDPTDT*
Ga0062592_1007242483	3300004480	Soil	DALRRFDPALGGTSSDGYSVSVDVGESDRRILDVLDAIHQHVEKGHSLTRVEIDGRHTIDPTDT*
Ga0068868_1007086611	3300005338	Miscanthus Rhizosphere	CSYRLTTSVREVTMRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT*
Ga0068868_1013443611	3300005338	Miscanthus Rhizosphere	RQVARLDLTSMRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET*
Ga0070689_1017612081	3300005340	Switchgrass Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQYVHEGNDMARVELDGRKYTVFPGQ*
Ga0070674_1019404301	3300005356	Miscanthus Rhizosphere	MIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET*
Ga0070710_112918231	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQHVHEGNDMARVELDGRKYTVFP
Ga0070678_1003374783	3300005456	Miscanthus Rhizosphere	RQLADRRRLRRPVQERLAANLGADVAVRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQYVHEGNDMARVELDGRKYTVFPGQ*
Ga0070741_1001866511	3300005529	Surface Soil	VRAFTVKAKTLESAQELLEALRQFDPALEGSSSEGYSVSVDVGDDRRLLSLLEAIQQHVRERHDSARVELDGRGYTVHPS*
Ga0070672_1007838621	3300005543	Miscanthus Rhizosphere	RAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGWSVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT*
Ga0068856_1013430362	3300005614	Corn Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQHVHEGNDMARVELDGRKYTVFPGQ*
Ga0075425_1006850231	3300006854	Populus Rhizosphere	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMD
Ga0075434_1005127812	3300006871	Populus Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQHVHEGNDMARVELDGRKYTVFPGQ*
Ga0068865_1013317212	3300006881	Miscanthus Rhizosphere	AQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT*
Ga0075424_1007494771	3300006904	Populus Rhizosphere	RLAANLGADVAVRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQHVHEGNDMARVELDGRKYTVFPGQ*
Ga0111539_121396381	3300009094	Populus Rhizosphere	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNI
Ga0105245_101627413	3300009098	Miscanthus Rhizosphere	MRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET*
Ga0105245_113715782	3300009098	Miscanthus Rhizosphere	MRAFMIKAKTRESAQSLFEALRRFDPALGGSSRDGYFVSVDVGGNDRRILEVLDAIHEHV
Ga0105243_101174214	3300009148	Miscanthus Rhizosphere	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINRPTPS*
Ga0105241_103769602	3300009174	Corn Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQHVHEGNDMARVELDGRKYTVFPRQ*
Ga0105242_100724191	3300009176	Miscanthus Rhizosphere	RFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET*
Ga0105249_109716912	3300009553	Switchgrass Rhizosphere	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYSVSVDVGESDRRILEVLDAIHEHVEKGYSLVRVQVDDRQ
Ga0105249_114594501	3300009553	Switchgrass Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQYVHEGNDMARVELDGRKYTV
Ga0126312_113195641	3300010041	Serpentine Soil	VRAFTIKAKSLESAQSLFEALRRFDPSLGGSPTDGYSVSVDVGESDRRILEVLDAIHEHVQKGHNLTRVE
Ga0126319_10917131	3300010147	Soil	VRAFTIKAKSLESAQSLFDALSRFDPFLDGYSVSVDVGVSERRILQVLDAIHTHVEKGHSLTRVELDGRHYSIHPT*
Ga0105239_109049391	3300010375	Corn Rhizosphere	MRAFTIKTKTLNSAESVFDALRRFDPVLESESYSVSLDVGKSDRRILEVLDAIYERVEKGHSLTRVELDGRHYTINPTDT*
Ga0157301_101947481	3300012911	Soil	SLFEALRRFDPSLGGSPSEGYSVSVDVGESDRRILEVLDAIHEHVHERHSLTRDELDERKYAVHPTNT*
Ga0157301_102769181	3300012911	Soil	MRAFTIKAKTLESAQSLFDALRRCDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGR
Ga0157297_104292492	3300012914	Soil	RSASEECSALIEWACPGGNCSYRLTTSVREVTMRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINRTNT*
Ga0164309_112243441	3300012984	Soil	AQSLFDALSRFDPSLDRYSVSVDVDESDLCILEVLDAIDTHVERGHNLTRVELDGWHYSIHPTHT*
Ga0164304_104182332	3300012986	Soil	VRAFTIKAKSLESAQSLFDALSRFDPSLDRYSVSVDVDESDLCILEVLDAIDTHVERGHNLTRVELDGWHYSIHPTHT*
Ga0157371_106743371	3300013102	Corn Rhizosphere	LFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQHVHEGNDMARVELDGRKYTVFPRQ*
Ga0157374_102444871	3300013296	Miscanthus Rhizosphere	VRAFTVKAKSLESAQTLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQYVHEGNDMARVELDGRKYTVFPGQ*
Ga0157375_110792912	3300013308	Miscanthus Rhizosphere	TVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQYVHEGNDMARVELDGRKYTVFPGQ*
Ga0163163_132175741	3300014325	Switchgrass Rhizosphere	KAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT*
Ga0157377_105735511	3300014745	Miscanthus Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQHVHEGNDMARVELDGRK*
Ga0173483_100386051	3300015077	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYSVSVDVGQSDRRILEVVDAIHEHVEKGHSLTRVEMDGRRYNINPTNT*
Ga0173483_100808121	3300015077	Soil	MRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDR
Ga0132258_101753902	3300015371	Arabidopsis Rhizosphere	VRHFTIKAKSLESAQTLFDALRRFDPALEGSSSEGYFVSVDVGQSDRRILEVLETIQEHVHERHAATRVELDGRSYTVHPT*
Ga0132258_118682251	3300015371	Arabidopsis Rhizosphere	MRTFMIEAQSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEKGDTLTRVELDGRAYTVRAPTKT*
Ga0132258_121520193	3300015371	Arabidopsis Rhizosphere	MRTFTVKAKTLESAQSLFNALRRFDPALEGSASEGYSVSVDVGANDRRLLDVLEAIHQHVQERDDPARVELDGRKYSVYPE*
Ga0132256_1020803372	3300015372	Arabidopsis Rhizosphere	MRSFTIKAKTRESAQSLFEALRRFDPALGGSSRDGYFVSVDVGGNDRRILGVLDVIHEHVEKGHRLTRVELDGRAYTVHPPKT*
Ga0132257_1037227371	3300015373	Arabidopsis Rhizosphere	PPIQTLETRVSVRHFTIKAKSLESAQTLFDALRRFDPALEGSSSEGYFVSVDVGQSDRRILEVLETIQEHVHERHAATRVELDGRSYTVHPT*
Ga0163161_107944611	3300017792	Switchgrass Rhizosphere	MRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET
Ga0163161_111663621	3300017792	Switchgrass Rhizosphere	MRAFTIKAKTLESAQSLFDALRRFDPALSGGSSDGYFVSVDVGGSDRRVLVVLDAIHEHVEKGHTLTRVELDGHAYTVRPT
Ga0184625_101618443	3300018081	Groundwater Sediment	VRAFTIKAKSLESAQSLFDALSRFDPSLDGYSVSVDVGVSERRILQVLDAIHTHVKKGHSLTRVELDGRHYSIHPT
Ga0173482_100105091	3300019361	Soil	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT
Ga0173479_100598201	3300019362	Soil	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQHVHEGNDMARVELDGRKYTVFPRQ
Ga0222622_100715913	3300022756	Groundwater Sediment	VRAFTIKTKTLNSAESVFDALRRFDPVLESESYSVSVDVGESDRRILEVLDAIYEHVEKGHSLSRVELDGRQYTINPTES
Ga0222622_106070252	3300022756	Groundwater Sediment	VRAFTIKAKSLESAQSLFDTLSRFDPSLDGYSVSVDVGESDRRILEVLDAIHTHVEKGHSLTRVELDGRHYSIHPTDT
Ga0247745_10496481	3300022898	Soil	EWACPGGNCSYRLTTSVREVTMRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT
Ga0247789_10866781	3300023266	Soil	ASEECSALIEWACPGGNCSYRLTTSVREVTMRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT
Ga0207693_113848731	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LRRPVQERLAANLGANVAVRAFTVKAKSLESAQNLFNALRHFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQHVHEGNDMARVELDGRKYTVFPGQ
Ga0207644_112198541	3300025931	Switchgrass Rhizosphere	SVHEVTMRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT
Ga0207706_105177931	3300025933	Corn Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQHVHEGNDMARVELDGRKYTVFPGQ
Ga0207709_109128091	3300025935	Miscanthus Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQYVHEGNDMARVELDGRKYTVFPGSSADPPWRSRQARRG
Ga0207669_114847352	3300025937	Miscanthus Rhizosphere	MRTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDASESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET
Ga0207661_113567511	3300025944	Corn Rhizosphere	MRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGWSVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT
Ga0207712_110897701	3300025961	Switchgrass Rhizosphere	EECSALIEWACPGGNCSYRLTTSVREVTMRAFTIKAKTLESAQSLFDALRRFDPALSGTSSDGYTVSVDVGESDRRILDVLDAIHEHVEKGHSLTRVEMDGRRYNINPTNT
Ga0207712_117903591	3300025961	Switchgrass Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILKVLDAIQQYVHEGNDMARVELDGRKYTVFPGQ
Ga0207677_109851361	3300026023	Miscanthus Rhizosphere	DSATHLRHRQVARLDLTSMRTFMIEAKSLHSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET
Ga0207648_121311541	3300026089	Miscanthus Rhizosphere	RTFMIEAKSLQSAQSLFEALRRFDPALGGSPRDGYIVSVDVSESDRRILEVLDAIHDRVEMGDTLTRVELDGRAYTVRQPET
Ga0268264_108446862	3300028381	Switchgrass Rhizosphere	VRAFTVKAKSLESAQNLFNALRRFDPALDGSSSEGYSVSVDVGADSRRILEVLDAIQQYVHEGNDMARVELDGRKYTVFPGQ
Ga0307282_102937973	3300028784	Soil	VRAFTIKARTLDSAQSLFDALRRFDPALGGIASDGYSVSLDVGESDRRILEVLDAIHTHVEKGHSLVRVQLDGRHYSINPTDT
Ga0307312_109110622	3300028828	Soil	AQSLFDTLSRFDPSLDGYSVSVDVGESDRRILEVLDAIHTHVEKGHSLVRVQLDGRHYSINPTDT
Ga0307289_104341741	3300028875	Soil	VRAFTIKARTLDSAQSLFDALRRFDPALGGIASDGYSVSLDVGESDRRILEVLDAIHTHVEKGHSLTRVELDGRHYSIHPTDT
Ga0308189_105216392	3300031058	Soil	VRAFTIKAKNLESAQSLFDALRRFDPALEGGASEGYCVSVDVSGQDRRIIQVLDALQEHVVERQRSAIVELDGRPTVHPA
Ga0308201_100223433	3300031091	Soil	VRAFTIKTKTLNSAESVFDALRRVDPVLESESYSVSVDVGESDRRILEVLDAIYEHVEKGHSLSRVELDGRQYTINPTES

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F091023

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences