Metagenome Family F090838

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F090838
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	47 residues
Representative Sequence	LSDLQRREFHEALLEADSFEDLPGKWQAAILAAEQNRPKLRVVTGD
Number of Associated Samples	62
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	3.70 %
% of genes near scaffold ends (potentially truncated)	46.30 %
% of genes from short scaffolds (< 2000 bps)	81.48 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (52.778 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (41.667 % of family members)
Environment Ontology (ENVO)	Unclassified (41.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.481 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.84% β-sheet: 0.00% Coil/Unstructured: 62.16%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF12680	SnoaL_2	13.89
PF03861	ANTAR	2.78
PF10057	MpsC	1.85
PF07676	PD40	1.85
PF02426	MIase	0.93
PF00501	AMP-binding	0.93
PF00582	Usp	0.93
PF14690	zf-ISL3	0.93
PF00122	E1-E2_ATPase	0.93
PF13489	Methyltransf_23	0.93
PF00353	HemolysinCabind	0.93
PF00903	Glyoxalase	0.93
PF00578	AhpC-TSA	0.93
PF01483	P_proprotein	0.93
PF00011	HSP20	0.93
PF09335	SNARE_assoc	0.93
PF05694	SBP56	0.93
PF01497	Peripla_BP_2	0.93
PF03631	Virul_fac_BrkB	0.93
PF13229	Beta_helix	0.93
PF01654	Cyt_bd_oxida_I	0.93
PF13683	rve_3	0.93
PF12850	Metallophos_2	0.93
PF07883	Cupin_2	0.93
PF13193	AMP-binding_C	0.93
PF02322	Cyt_bd_oxida_II	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG3707	Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domains	Transcription [K]	2.78
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.93
COG0398	Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family	Function unknown [S]	0.93
COG0474	Magnesium-transporting ATPase (P-type)	Inorganic ion transport and metabolism [P]	0.93
COG0586	Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family	Cell wall/membrane/envelope biogenesis [M]	0.93
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG1238	Uncharacterized membrane protein YqaA, VTT domain	Function unknown [S]	0.93
COG1271	Cytochrome bd-type quinol oxidase, subunit 1	Energy production and conversion [C]	0.93
COG1294	Cytochrome bd-type quinol oxidase, subunit 2	Energy production and conversion [C]	0.93
COG1295	Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)	Function unknown [S]	0.93
COG2216	K+ transport ATPase, ATPase subunit KdpB	Inorganic ion transport and metabolism [P]	0.93
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.93
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.93
COG4829	Muconolactone delta-isomerase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93
COG4935	Regulatory P domain of the subtilisin-like proprotein convertases and other proteases	Posttranslational modification, protein turnover, chaperones [O]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
All Organisms	root	All Organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
cellular organisms	root	All Organisms → cellular organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.11 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	35.19 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.93 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	10.19 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	10.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.93 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	5.56 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	5.56 %
Thermoleophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales	3.70 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2.78 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.93 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.93 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.56 %
Thermoleophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae	3.70 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	2.78 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2.78 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	1.85 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.93 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.56 %
unclassified Thermoleophilaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae	3.70 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	2.78 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2.78 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.85 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.93 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.56 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3.70 %
unclassified Conexibacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter	2.78 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2.78 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.85 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.93 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	5.56 %
Thermoleophilaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3.70 %
Conexibacter sp. S30A1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1	2.78 %
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2.78 %
Solirubrobacterales bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	1.85 %
Polaromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	0.93 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.93 %
Actinobacteria bacterium 13_1_20CM_3_68_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	0.93 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.93 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000033\|ICChiseqgaiiDRAFT_c2323927	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	1110	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_13677217	Not Available	545	Open in IMG/M
3300000858\|JGI10213J12805_10022502	Not Available	1863	Open in IMG/M
3300003373\|JGI25407J50210_10002711	All Organisms → cellular organisms → Bacteria	4212	Open in IMG/M
3300003373\|JGI25407J50210_10007593	All Organisms → cellular organisms → Bacteria	2719	Open in IMG/M
3300003373\|JGI25407J50210_10050475	Not Available	1055	Open in IMG/M
3300004157\|Ga0062590_102256938	Not Available	571	Open in IMG/M
3300004463\|Ga0063356_101016773	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1185	Open in IMG/M
3300004463\|Ga0063356_102206503	Not Available	838	Open in IMG/M
3300004479\|Ga0062595_101584272	Not Available	609	Open in IMG/M
3300005341\|Ga0070691_10869031	Not Available	554	Open in IMG/M
3300005457\|Ga0070662_101460005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	590	Open in IMG/M
3300005546\|Ga0070696_100577420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1	904	Open in IMG/M
3300005562\|Ga0058697_10286464	Not Available	781	Open in IMG/M
3300005981\|Ga0081538_10001921	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	20817	Open in IMG/M
3300005981\|Ga0081538_10009863	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	7898	Open in IMG/M
3300005981\|Ga0081538_10062774	All Organisms → cellular organisms → Bacteria	2115	Open in IMG/M
3300005981\|Ga0081538_10106710	Not Available	1389	Open in IMG/M
3300005981\|Ga0081538_10115274	Not Available	1307	Open in IMG/M
3300005981\|Ga0081538_10228219	Not Available	730	Open in IMG/M
3300006058\|Ga0075432_10393238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	597	Open in IMG/M
3300006169\|Ga0082029_1631983	Not Available	633	Open in IMG/M
3300006844\|Ga0075428_100075007	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3695	Open in IMG/M
3300006853\|Ga0075420_101390532	Not Available	602	Open in IMG/M
3300006876\|Ga0079217_11241492	Not Available	570	Open in IMG/M
3300006880\|Ga0075429_100176881	Not Available	1870	Open in IMG/M
3300009147\|Ga0114129_10842734	Not Available	1166	Open in IMG/M
3300009156\|Ga0111538_12743862	Not Available	617	Open in IMG/M
3300009789\|Ga0126307_10005552	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	8841	Open in IMG/M
3300009789\|Ga0126307_11709811	Not Available	511	Open in IMG/M
3300009840\|Ga0126313_10019053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	4531	Open in IMG/M
3300009840\|Ga0126313_10035567	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3445	Open in IMG/M
3300009840\|Ga0126313_10044696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3100	Open in IMG/M
3300009840\|Ga0126313_10120018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1955	Open in IMG/M
3300009840\|Ga0126313_10168926	All Organisms → cellular organisms → Bacteria	1664	Open in IMG/M
3300009840\|Ga0126313_10325993	Not Available	1205	Open in IMG/M
3300009840\|Ga0126313_10362813	All Organisms → cellular organisms → Bacteria	1144	Open in IMG/M
3300009840\|Ga0126313_10420378	Not Available	1062	Open in IMG/M
3300009840\|Ga0126313_11180072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Polaromonas	630	Open in IMG/M
3300009840\|Ga0126313_11186686	Not Available	629	Open in IMG/M
3300009840\|Ga0126313_11243674	Not Available	614	Open in IMG/M
3300010036\|Ga0126305_10252943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1133	Open in IMG/M
3300010036\|Ga0126305_10447346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	857	Open in IMG/M
3300010036\|Ga0126305_10943014	Not Available	590	Open in IMG/M
3300010037\|Ga0126304_10081438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	2020	Open in IMG/M
3300010037\|Ga0126304_10171494	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300010037\|Ga0126304_10607268	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	737	Open in IMG/M
3300010037\|Ga0126304_10756167	Not Available	658	Open in IMG/M
3300010038\|Ga0126315_10048284	All Organisms → cellular organisms → Bacteria	2300	Open in IMG/M
3300010038\|Ga0126315_10318476	Not Available	963	Open in IMG/M
3300010038\|Ga0126315_10337027	Not Available	937	Open in IMG/M
3300010038\|Ga0126315_10656497	Not Available	681	Open in IMG/M
3300010038\|Ga0126315_10898511	Not Available	588	Open in IMG/M
3300010038\|Ga0126315_11171744	Not Available	521	Open in IMG/M
3300010040\|Ga0126308_10076340	Not Available	2007	Open in IMG/M
3300010040\|Ga0126308_10262403	Not Available	1126	Open in IMG/M
3300010040\|Ga0126308_10762104	Not Available	668	Open in IMG/M
3300010041\|Ga0126312_10041583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Thermoleophilales → Thermoleophilaceae → unclassified Thermoleophilaceae → Thermoleophilaceae bacterium	3071	Open in IMG/M
3300010041\|Ga0126312_10107218	All Organisms → cellular organisms → Bacteria	1914	Open in IMG/M
3300010041\|Ga0126312_10132870	Not Available	1720	Open in IMG/M
3300010041\|Ga0126312_10387399	Not Available	993	Open in IMG/M
3300010041\|Ga0126312_10520445	Not Available	852	Open in IMG/M
3300010042\|Ga0126314_10056409	Not Available	2568	Open in IMG/M
3300010042\|Ga0126314_10232273	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1306	Open in IMG/M
3300010042\|Ga0126314_10510094	Not Available	873	Open in IMG/M
3300010044\|Ga0126310_11729936	Not Available	520	Open in IMG/M
3300010045\|Ga0126311_11579653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	551	Open in IMG/M
3300010166\|Ga0126306_10210596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_3_68_9	1471	Open in IMG/M
3300010166\|Ga0126306_10250905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1350	Open in IMG/M
3300010166\|Ga0126306_10263724	Not Available	1318	Open in IMG/M
3300010166\|Ga0126306_10450077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1013	Open in IMG/M
3300010166\|Ga0126306_11151022	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	636	Open in IMG/M
3300010166\|Ga0126306_11716657	Not Available	524	Open in IMG/M
3300010375\|Ga0105239_10985010	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1	969	Open in IMG/M
3300010399\|Ga0134127_11534741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	739	Open in IMG/M
3300010399\|Ga0134127_13097528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	543	Open in IMG/M
3300012204\|Ga0137374_10004920	All Organisms → cellular organisms → Bacteria	15888	Open in IMG/M
3300012358\|Ga0137368_10412331	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	885	Open in IMG/M
3300012358\|Ga0137368_10644593	Not Available	670	Open in IMG/M
3300012684\|Ga0136614_10391958	Not Available	1016	Open in IMG/M
3300012938\|Ga0162651_100059649	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	614	Open in IMG/M
3300015374\|Ga0132255_106000965	Not Available	514	Open in IMG/M
3300018081\|Ga0184625_10544472	Not Available	578	Open in IMG/M
3300018422\|Ga0190265_10197073	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	2021	Open in IMG/M
3300018466\|Ga0190268_11960285	Not Available	536	Open in IMG/M
3300018469\|Ga0190270_10679232	Not Available	1018	Open in IMG/M
3300018469\|Ga0190270_11948722	Not Available	645	Open in IMG/M
3300018481\|Ga0190271_10171615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2123	Open in IMG/M
3300019377\|Ga0190264_10364183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	916	Open in IMG/M
3300019767\|Ga0190267_10813712	Not Available	623	Open in IMG/M
3300019767\|Ga0190267_11063851	Not Available	576	Open in IMG/M
3300021078\|Ga0210381_10205641	All Organisms → cellular organisms → Bacteria → Terrabacteria group	688	Open in IMG/M
3300025901\|Ga0207688_10804112	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → unclassified Conexibacter → Conexibacter sp. S30A1	596	Open in IMG/M
3300025927\|Ga0207687_10284730	Not Available	1326	Open in IMG/M
3300025932\|Ga0207690_10572314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium	920	Open in IMG/M
3300025933\|Ga0207706_11189165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	634	Open in IMG/M
3300025961\|Ga0207712_10265666	Not Available	1393	Open in IMG/M
3300027880\|Ga0209481_10643024	Not Available	550	Open in IMG/M
3300028722\|Ga0307319_10069339	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1116	Open in IMG/M
3300028744\|Ga0307318_10004647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4431	Open in IMG/M
3300028771\|Ga0307320_10106675	Not Available	1067	Open in IMG/M
3300028782\|Ga0307306_10184572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300028889\|Ga0247827_11115886	Not Available	542	Open in IMG/M
3300030336\|Ga0247826_11055340	Not Available	647	Open in IMG/M
3300031229\|Ga0299913_11374454	Not Available	662	Open in IMG/M
3300031858\|Ga0310892_10916137	All Organisms → cellular organisms → Bacteria	614	Open in IMG/M
3300031944\|Ga0310884_10768402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	587	Open in IMG/M
3300032159\|Ga0268251_10017036	Not Available	2111	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.07%
Host-Associated	Host-Associated	25.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.30%
Plants	Host-Associated → Plants	25.93%
Aquatic	Environmental → Aquatic	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.37%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.04%
Roots	Host-Associated → Plants → Roots	8.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.70%
Freshwater	Environmental → Aquatic → Freshwater	1.85%
Phylloplane	Host-Associated → Plants → Phylloplane	1.85%
Sediment	Environmental → Aquatic → Sediment	0.93%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.26%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	8.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.78%
Loam	Environmental → Terrestrial → Soil → Loam	1.85%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	1.85%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.93%
Ice	Environmental → Aquatic → Freshwater → Ice	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	58.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.26%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	8.33%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.70%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.78%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.85%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.93%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	41.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.11%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	8.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.70%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	2.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	1.85%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	1.85%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.93%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.93%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.93%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000858	Soil microbial communities from Great Prairies - Wisconsin Native Prairie soil	Environmental	Open in IMG/M
3300003373	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006058	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012358	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_100_16 metaG	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012938	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t2i015	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028771	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_369	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028889	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ICChiseqgaiiDRAFT_23239271	3300000033	Soil	PPLCDMGDSQRREFHEALLDADAFEDLPGGWQAAVVRSEQNRLKLRLVGSPNAS*
ICChiseqgaiiFebDRAFT_136772173	3300000363	Soil	PPLSEMGDLQRRVFHEALLDADNLRRPAWERWQAAIVSAEQNRPQLRVVKED*
JGI10213J12805_100225021	3300000858	Soil	PPLSEMSVYQRREFHEALLEVDSFEDLPGKWQAAVLKEEKNRPNLRIVGSD*
JGI25407J50210_100027114	3300003373	Tabebuia Heterophylla Rhizosphere	MSAEQRREFHEALLDADSFEDLPGKWQAAILKAEQRRPKLRVVSGD*
JGI25407J50210_100075935	3300003373	Tabebuia Heterophylla Rhizosphere	MSELQRRELHEALLDADSFEDLPGKWQAAILKAEENRPNLRIVGGD*
JGI25407J50210_100504753	3300003373	Tabebuia Heterophylla Rhizosphere	PPLSEMGDRQRREFXEALLEANTFEDLPGKWQATILKAEENRPKLRVVSGD*
Ga0062590_1022569382	3300004157	Soil	ELGTDQRREFHEALLDADSVEDLPGKWQAAIVAAEQNSPKLRVVSGD*
Ga0063356_1010167732	3300004463	Arabidopsis Thaliana Rhizosphere	MGDLRRREFHEALLEAGGFEDLPGKWQAAIMEAEQNPPKLRVVTGE*
Ga0063356_1022065031	3300004463	Arabidopsis Thaliana Rhizosphere	EFHEALLDAGSFEDLSGRWQAAIVAAEQNRPQLRLIGSD*
Ga0062595_1015842722	3300004479	Soil	QRRECHEALLDADSFEDLPGKWRAAIVQAEQGQPNLRLVRD*
Ga0070691_108690311	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MGDLQRREFHEALLDADSFEDLPGKWQAAIVAAEQRRRRLRIVSGG*
Ga0070662_1014600051	3300005457	Corn Rhizosphere	QRREFHEALLETDSFEDPPGKWQAAIVKAEQNRSKLRLIGDD*
Ga0070696_1005774202	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MGELQRREFHEALLDAGAFEDLPGKWQAAILEAEQNRPQLRVFTSD*
Ga0058697_102864641	3300005562	Agave	MSDLQRRDFHEALLDADAFEDLPGKWQAEILKAEENRPKLRIVGTE*
Ga0081538_1000192118	3300005981	Tabebuia Heterophylla Rhizosphere	MGDRQRREFHEALLEANTFEDLPGKWQATILKAEENRPKLRVVSGD*
Ga0081538_100098634	3300005981	Tabebuia Heterophylla Rhizosphere	MDDPQRREFHEALLDADGFADLPGKWQAAIMKSERNRPNLRIVGSD*
Ga0081538_100627742	3300005981	Tabebuia Heterophylla Rhizosphere	MSRLQRREFHESLLDSDAFEDLPSKWQAAILKAEENAPNLRIVGAG*
Ga0081538_101067104	3300005981	Tabebuia Heterophylla Rhizosphere	MSKLERREFHEALLHADGFEDLPGKWQAAILTAEQNRPSLRIVRS
Ga0081538_101152743	3300005981	Tabebuia Heterophylla Rhizosphere	MTDLERREFHEALPDADAFEDLPGKWQAAIFKAEQNRPKPRLVSDA*
Ga0081538_102282192	3300005981	Tabebuia Heterophylla Rhizosphere	MSDLQRREFHEALLDADRFEDLSGKWQVAILKAEGNRPNLRIVTS*
Ga0075432_103932381	3300006058	Populus Rhizosphere	QRREFHEALLDAGSFEDLPGEWQAAILEAEHNRPKMQVVRTD*
Ga0082029_16319832	3300006169	Termite Nest	MAADQRHEFHEALLDADSFEDLPGKWQPAIVKAEQEPPKLRVVNSD*
Ga0075428_1000750076	3300006844	Populus Rhizosphere	MNDTQRREFHEALLDAGSFDDLPGKWQAAVVAAEQNRPKLRVVSGD*
Ga0075420_1013905321	3300006853	Populus Rhizosphere	VGYPPLCDMGEDQRRECHEALLDADAFEDLPGKWQAAIVTAEQNRPKLRVVSGD*
Ga0079217_112414922	3300006876	Agricultural Soil	MDEQPRREFHEALLDADSFEDLPGKWQAAIVTAEQNQPKLRIVRH*
Ga0075429_1001768812	3300006880	Populus Rhizosphere	MNDTQRREFHEALLDAGSFDDLPGKWQAAVVAAEQNRPKLRLISND*
Ga0114129_108427343	3300009147	Populus Rhizosphere	MSDLQRREFHEALLEAATFEDLPGKWQAAIVLGEQNRPDLRIVGSD*
Ga0111538_127438622	3300009156	Populus Rhizosphere	REFQEALLDAHSFEDLPGKWQSAIVSAEQNQPKLRVVSRD*
Ga0126307_100055526	3300009789	Serpentine Soil	MGDLQRRDFHEALLEPDTFEDLAGKWQAAIVQTEQNRPTLRLIRSN*
Ga0126307_117098111	3300009789	Serpentine Soil	HEALLDADSFEDLPGKWQAAILKAEQNRPPLRVVTSD*
Ga0126313_100190539	3300009840	Serpentine Soil	MTGSAAEFQEALLDADSFDDLPGKWQAAILEAEQNRRKLRVVTGD*
Ga0126313_100355673	3300009840	Serpentine Soil	MDDRQRREFHEALLDANGFEDLPGKWQAAILEAEVQRPKLRLISDG*
Ga0126313_100446962	3300009840	Serpentine Soil	VSWRREFQEALLDAGSFEDLPGKWQAAIVRAEQNRPRLRVIGGD*
Ga0126313_101200182	3300009840	Serpentine Soil	MDDGQRREFREALLDADSFENLPGKWQAAILEAEQNRPPLRVVTSDRLAPS*
Ga0126313_101689263	3300009840	Serpentine Soil	MDAQQRREFHEALLDARVFDPGKWQAAILNAEAARPRLRLVSRD*
Ga0126313_103259932	3300009840	Serpentine Soil	MDDRQRRELHEALLDADGFEDLPGKWQAAILKAEAARPKLRVVSGD*
Ga0126313_103628133	3300009840	Serpentine Soil	APQRREFHEARLDAGSFEESAREVAAEQNRPKLRVVRDG*
Ga0126313_104203782	3300009840	Serpentine Soil	MDDRQRREFDEALLEAGSFEDLPGKWQAAILKAEQNRPKLRVVTGD*
Ga0126313_111800721	3300009840	Serpentine Soil	MSEGQRREFHEALLEAGTFEDLPGKWQAAILQAEQRRPKLRVVVSD*
Ga0126313_111866861	3300009840	Serpentine Soil	MDDRQRREFHEALLGAESFEDLPGKWQAAILEAEAGRPRLRVVTGD*
Ga0126313_112436742	3300009840	Serpentine Soil	MDDRQRRSSEALLDADALEDLPGKWQAAILKAEAARPQLRVVEGD*
Ga0126305_102529431	3300010036	Serpentine Soil	VELDDLQRREFHEALLEAGSFDDLSGKWQAAILQAEQNRPQLRVSSD*
Ga0126305_104473461	3300010036	Serpentine Soil	MSDLQRREFHEALLEPASFEDLPRKWQAAILAAEQNRPQRRLVNGD*
Ga0126305_109430142	3300010036	Serpentine Soil	MGDLQRRDFHEALLEADTFEDLAGKWQAAIVQTEQNRPTLRLIRSN*
Ga0126304_100814381	3300010037	Serpentine Soil	SWDDLQRREFHEALLEAGSFEDLPGKWQAAILEAEQNRPKLRLVTGD*
Ga0126304_101714941	3300010037	Serpentine Soil	MDERQRREFDEALLEADSFEDLPGKWQAAILKAEAARPQLRVVEGD*
Ga0126304_106072681	3300010037	Serpentine Soil	MSGPSRREFHEALLDADSFEDLPGKWQAAILKAEQNRPNLRVVRDG*
Ga0126304_107561673	3300010037	Serpentine Soil	EFHEALLEAGSFDDLSGKWQAAILQAEQNRPQLRVSSD*
Ga0126315_100482843	3300010038	Serpentine Soil	MDDRQRREFHEALLEADNFEDLPGKWQAAILKAEAARPELHVVEGE*
Ga0126315_103184763	3300010038	Serpentine Soil	VGYPPLVEIDDQQRREFHEALLDADSFEDLPGKWQAAILEAEQNRPKLLLVSDD*
Ga0126315_103370271	3300010038	Serpentine Soil	VGYSPLVEMDEKQRREFHEALLDAERFEDLPGKWQAAILEAEAARPQLRVLAGD*
Ga0126315_106564972	3300010038	Serpentine Soil	VGYPPLVEMDDRQRRELHEALLDADSFDDLPGKWQAAILKAEAARPLCP*
Ga0126315_108985112	3300010038	Serpentine Soil	DDRQRRELHEALLDADGFEDLPGKWQAAILKAEAARPKLRVVSGD*
Ga0126315_111717442	3300010038	Serpentine Soil	VGIDDRQRRELHEALLDADSFEDLPGKWEAAILTAEAARPQLRIIDED*
Ga0126308_100763404	3300010040	Serpentine Soil	SELGDLHRREFHEALLEAGVFADLPGKWHAAILKAEQARPMLRVVSGD*
Ga0126308_102624034	3300010040	Serpentine Soil	VGYPPLSEMGDLQRRDFHEALLEADTFEDLAGKWQAAIVQTEQNRPTLRLIRSN*
Ga0126308_107621042	3300010040	Serpentine Soil	SEMGDLQRRDFHEALLEADTFEDLAGKCQAAILKAEQHRPKLRLIRND*
Ga0126312_100415837	3300010041	Serpentine Soil	LDDRQRREFQEALLDADSFEDLPGKWQAAILEAEAARPNLRVVPGD*
Ga0126312_101072183	3300010041	Serpentine Soil	MDDRQRREFHEALLDAESLEDLPGKWQAAILEAEAARPQLRVVTGE*
Ga0126312_101328703	3300010041	Serpentine Soil	MDDGQRREFHEALLDADSFEELPGKWQAAILKAEQNRPKLRIVSRD*
Ga0126312_103873991	3300010041	Serpentine Soil	MSYLQKSPEFHQALVDAETFEDLSGKWQAAILKAEQNRPDLRIVG
Ga0126312_105204451	3300010041	Serpentine Soil	QRREFHEALLDANGFEDLPGKWQAAILEAEVQRPKLRLISDG*
Ga0126314_100564093	3300010042	Serpentine Soil	MGAQQRREFHEALLEAATLEDLPGKWQAAILKAERSRPKLRVIAGA*
Ga0126314_102322734	3300010042	Serpentine Soil	HEALLDADSFEDLPGKWQAAILEAEQNRPKLLLVSDD*
Ga0126314_105100941	3300010042	Serpentine Soil	MGVAQRREFHESLLGAETFEDLPGNWQAAILKAEQSRPNLRVVRSE*
Ga0126310_117299362	3300010044	Serpentine Soil	LVGYPPLCNMGDHQRREFHEALLDAHSFEDLPGKWQAAIVSAEQNQPKLRVVRRG*
Ga0126311_115796531	3300010045	Serpentine Soil	ASSTRPCSNADSFEDLPGKWQVAILKAEAARPQLRVVSRD*
Ga0126306_102105963	3300010166	Serpentine Soil	MGEQQRREFHEALLDADSFEDLPGKWQAAISKAEQTRPKLRLIRSH*
Ga0126306_102509052	3300010166	Serpentine Soil	MGDQQRREFHEALLDAGSFEDLPGKWQAAILKAEQNRPKLRLVTED*
Ga0126306_102637241	3300010166	Serpentine Soil	EMSDLQRRLVHEALLEAGSFDDLPGKWQAAILHAEQNRPRLRVVSGD*
Ga0126306_104500772	3300010166	Serpentine Soil	MDDRQRREFHEALLEADSFEDLLGKWQAAILKAEQNRPQLRVVTGD*
Ga0126306_111510222	3300010166	Serpentine Soil	EVQRREFQEALLEAGTFEGLPGKWQAAILEAEQNRPKLRVVSGG*
Ga0126306_117166571	3300010166	Serpentine Soil	MSDQQRREFQEALLAADSIEDLPGECQAAILEAEQNRPKLRIVAGD*
Ga0105239_109850102	3300010375	Corn Rhizosphere	MGDDQRREFHEALLDADSFEDLPGKWQAAVVTAEQNRPNLRVVTGD*
Ga0134127_115347413	3300010399	Terrestrial Soil	EFHEALLDGDSFEDLLGKWQAAVVKAELNRPKLRLIGDD*
Ga0134127_130975281	3300010399	Terrestrial Soil	GYPPLCDMSELQRREFHEALLDADSFEDLPGKWQAAIVTAELNRPQLRLVSSD*
Ga0137374_100049203	3300012204	Vadose Zone Soil	MSEEQRREFHEALLEADGFEDLPGKWQAAILKAEQNRPKLRVVSGD*
Ga0137368_104123311	3300012358	Vadose Zone Soil	AYPPLSEMGADQRREFQEALLEADSFEDLPGKWQAAVLAAEQNRPTFRVVSSE*
Ga0137368_106445931	3300012358	Vadose Zone Soil	GYPPLSEMSEEQRREFHEALLEADGFEDLPGKWQAAILKAEQNRPKLRVVSGD*
Ga0136614_103919581	3300012684	Polar Desert Sand	MGDLQRREFHEALLDADGFEDLPGKWQAAILKAEENRPNLRIVDSG*
Ga0162651_1000596491	3300012938	Soil	SELDELQRREFDVALLEAETFEDLPGKWQAATLEAEQNRPKLRVV*
Ga0132255_1060009651	3300015374	Arabidopsis Rhizosphere	LPLSELGDLQRREFHEALLEADSFEDLPGKWQAAIVEAEQNRPKLKLISND*
Ga0184625_105444723	3300018081	Groundwater Sediment	ASKGRQLPPLSELGELQRREFHEALLEDARFEDLAGKWQAAILKAEQNRPKLRLLSSA
Ga0190265_101970733	3300018422	Soil	MSDSQRRDFQESLLDDDSFKDLPGKWQASILKAEQNRRKLRPVSDA
Ga0190268_119602851	3300018466	Soil	EALLDAHSFEDLPGKWQAAIASAEQNQPKLRLVSRD
Ga0190270_106792321	3300018469	Soil	MRLARMRSGACARGAGERSEFHEALLEADAFEDLPGKWQAAILEAEQNRPKLRVV
Ga0190270_119487221	3300018469	Soil	GYAPLSELSDLQRREFHDALLEAATFEDLPGKWQAAIVEAEQSRPRLRVVTSD
Ga0190271_101716152	3300018481	Soil	MPAEQRREFHEAVLDADDFEDLPGKWQAAILGAEDNRPKLWVVGSD
Ga0190264_103641832	3300019377	Soil	MSDSQRRDFQESLLDDDSFEDPPGKWQASILKAEQNRRKLRPVSDA
Ga0190267_108137122	3300019767	Soil	MASVELSRRVAFHEALLDAQAFEDLARKWQAATLEEEQNRPDLRVVSDG
Ga0190267_110638511	3300019767	Soil	PPLSEMGDLQRREFHEALLEAATFQDLPGRWQAAILEAEQNRPKLRLISSA
Ga0210381_102056411	3300021078	Groundwater Sediment	DAAQHRELHEALLDADGFEDLPGKWQAAIVAAEQNRPKLRIFSSD
Ga0207688_108041122	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MGDDQRREFHEALLDADSFEDLPGKWQAAVVTAEQNRPNLRVVTGD
Ga0207687_102847301	3300025927	Miscanthus Rhizosphere	MGDLQRREFHEALLDADSFEDLPGKWQAAIVAAEQRRRRLRIVSGG
Ga0207690_105723141	3300025932	Corn Rhizosphere	PPLSELGDLQPRESHEALLEAGSFEDLPGRWQAAILAAEQNRR
Ga0207706_111891651	3300025933	Corn Rhizosphere	QRREFHEALLETDSFEDPPGKWQAAIVKAEQNRSKLRLIGDD
Ga0207712_102656663	3300025961	Switchgrass Rhizosphere	SEMSDGQRREFHEALLEAASFEDLPGKWQAAVVTAEQNRPKLRVVTGD
Ga0209481_106430241	3300027880	Populus Rhizosphere	MNDTQRREFHEALLDAGSFDDLPGKWQAAVVAAEQNRPKLRVVSGD
Ga0307319_100693392	3300028722	Soil	LSDLQRREFHEALLEADSFEDLPGKWQAAILAAEQNRPKLRVVTGD
Ga0307318_100046477	3300028744	Soil	QRRDFHEALLDADTSENLPGKWQAAILKAEENRPKLRLVADL
Ga0307320_101066751	3300028771	Soil	HDALPICYPPLSELSDLQRREFHEALLEADSFEDLPGKWQAAILAAEQNRPKLRVVTGD
Ga0307306_101845721	3300028782	Soil	EFHEALLEAETLEDLPGKWQAAIIGAEQARPKPPVVTSD
Ga0247827_111158861	3300028889	Soil	EMADLQRREFHEALLDAGSFEDLPGKWQEVILKAKQNRPELRVVSGD
Ga0247826_110553401	3300030336	Soil	LQRREFHEALLEAGSFEDLPGKWQAPIAKAEQNRPRLRVVTHD
Ga0299913_113744541	3300031229	Soil	KKVVASPPLCDMDDTQRREFHEALLDADGFEDLPGKWQAAILEAEQKRPKLRVV
Ga0310892_109161372	3300031858	Soil	MGDLQRREFHEALLEAGSFEDLPGWWQAAILKAEQNRPKLRLV
Ga0310884_107684022	3300031944	Soil	MGDLQRREFHEALLEAGSFEDLPGWWQATILKAEQNRPKLRLV
Ga0268251_100170361	3300032159	Agave	MSDLQRRDFHEALLDADAFEDLPGKWQAEILKAEENRPKLRIVGTE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090838

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences