Metagenome Family F090722

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090722
Family Type	Metagenome
Number of Sequences	108
Average Sequence Length	104 residues
Representative Sequence	MRFRDHPVLERKSGMILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Number of Associated Samples	65
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	50.00 %
% of genes near scaffold ends (potentially truncated)	41.67 %
% of genes from short scaffolds (< 2000 bps)	93.52 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.70

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (71.296 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.704 % of family members)
Environment Ontology (ENVO)	Unclassified (40.741 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.741 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.14% β-sheet: 22.14% Coil/Unstructured: 55.73%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.70
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.70
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
b.55.1.13: BPHL domain	d3b77a1	3b77	0.62209
d.54.1.0: automated matches	d3i6ea1	3i6e	0.60913
d.54.1.0: automated matches	d4dyea1	4dye	0.60904
d.54.1.0: automated matches	d3r1za1	3r1z	0.60775
d.54.1.0: automated matches	d3ik4a1	3ik4	0.60546

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF02417	Chromate_transp	8.33
PF04366	Ysc84	2.78
PF12695	Abhydrolase_5	1.85
PF04261	Dyp_perox	0.93
PF02426	MIase	0.93
PF01381	HTH_3	0.93
PF04392	ABC_sub_bind	0.93
PF01476	LysM	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	8.33
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	2.78
COG2837	Periplasmic deferrochelatase/peroxidase EfeB	Inorganic ion transport and metabolism [P]	0.93
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.93
COG4829	Muconolactone delta-isomerase	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
All Organisms	root	All Organisms	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
cellular organisms	root	All Organisms → cellular organisms	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.70 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	9.26 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.85 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.85 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	1.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.85 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	1.85 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1.85 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	0.93 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Bryobacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae	1.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.93 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.93 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
unclassified Bryobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae	1.85 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Gluconacetobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	71.30 %
Bryobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1.85 %
Gluconacetobacter johannae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter johannae	0.93 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	0.93 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.93 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000793\|AF_2010_repII_A001DRAFT_10123698	Not Available	540	Open in IMG/M
3300004114\|Ga0062593_101503084	Not Available	725	Open in IMG/M
3300004114\|Ga0062593_102512169	Not Available	583	Open in IMG/M
3300004633\|Ga0066395_10933229	Not Available	527	Open in IMG/M
3300004643\|Ga0062591_102544776	Not Available	539	Open in IMG/M
3300005332\|Ga0066388_100701798	Not Available	1619	Open in IMG/M
3300005332\|Ga0066388_101265113	Not Available	1268	Open in IMG/M
3300005332\|Ga0066388_102524643	All Organisms → cellular organisms → Bacteria	934	Open in IMG/M
3300005332\|Ga0066388_102736674	Not Available	900	Open in IMG/M
3300005332\|Ga0066388_103338411	All Organisms → cellular organisms → Bacteria → Proteobacteria	820	Open in IMG/M
3300005344\|Ga0070661_100644957	Not Available	859	Open in IMG/M
3300005355\|Ga0070671_100577796	Not Available	970	Open in IMG/M
3300005434\|Ga0070709_11639280	Not Available	524	Open in IMG/M
3300005764\|Ga0066903_100111273	All Organisms → cellular organisms → Bacteria → Proteobacteria	3757	Open in IMG/M
3300005764\|Ga0066903_100355722	Not Available	2371	Open in IMG/M
3300005764\|Ga0066903_101020060	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300005764\|Ga0066903_101678707	Not Available	1208	Open in IMG/M
3300005764\|Ga0066903_103629984	Not Available	831	Open in IMG/M
3300005764\|Ga0066903_107210040	Not Available	575	Open in IMG/M
3300006175\|Ga0070712_100171409	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1684	Open in IMG/M
3300006237\|Ga0097621_100932116	Not Available	810	Open in IMG/M
3300006358\|Ga0068871_101744287	Not Available	591	Open in IMG/M
3300006755\|Ga0079222_10002676	All Organisms → cellular organisms → Bacteria	5457	Open in IMG/M
3300006804\|Ga0079221_10012592	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	3272	Open in IMG/M
3300006806\|Ga0079220_10062843	Not Available	1799	Open in IMG/M
3300010048\|Ga0126373_12252029	Not Available	606	Open in IMG/M
3300010360\|Ga0126372_10632739	Not Available	1033	Open in IMG/M
3300010361\|Ga0126378_12067288	Not Available	649	Open in IMG/M
3300010361\|Ga0126378_12109898	Not Available	643	Open in IMG/M
3300010366\|Ga0126379_12666688	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300010366\|Ga0126379_12871732	Not Available	576	Open in IMG/M
3300010366\|Ga0126379_13515747	Not Available	525	Open in IMG/M
3300010366\|Ga0126379_13702749	Not Available	512	Open in IMG/M
3300010376\|Ga0126381_101911960	Not Available	856	Open in IMG/M
3300010376\|Ga0126381_102549517	Not Available	732	Open in IMG/M
3300010376\|Ga0126381_103444956	Not Available	622	Open in IMG/M
3300010398\|Ga0126383_12921569	Not Available	558	Open in IMG/M
3300010401\|Ga0134121_12094777	Not Available	600	Open in IMG/M
3300012971\|Ga0126369_11471171	Not Available	771	Open in IMG/M
3300012971\|Ga0126369_12104532	Not Available	652	Open in IMG/M
3300013297\|Ga0157378_11707787	Not Available	677	Open in IMG/M
3300015371\|Ga0132258_10705342	Not Available	2540	Open in IMG/M
3300015371\|Ga0132258_11187777	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1929	Open in IMG/M
3300015371\|Ga0132258_11323941	All Organisms → cellular organisms → Bacteria	1820	Open in IMG/M
3300015372\|Ga0132256_100262588	All Organisms → cellular organisms → Bacteria	1799	Open in IMG/M
3300015373\|Ga0132257_100239188	Not Available	2164	Open in IMG/M
3300015373\|Ga0132257_100971158	Not Available	1068	Open in IMG/M
3300015373\|Ga0132257_103291174	Not Available	588	Open in IMG/M
3300015373\|Ga0132257_104391051	Not Available	513	Open in IMG/M
3300015374\|Ga0132255_100169420	All Organisms → cellular organisms → Bacteria	3065	Open in IMG/M
3300015374\|Ga0132255_100886170	Not Available	1334	Open in IMG/M
3300016270\|Ga0182036_11113184	Not Available	654	Open in IMG/M
3300016270\|Ga0182036_11381335	Not Available	589	Open in IMG/M
3300016294\|Ga0182041_10373301	Not Available	1206	Open in IMG/M
3300016319\|Ga0182033_10255915	All Organisms → cellular organisms → Bacteria	1425	Open in IMG/M
3300016341\|Ga0182035_10430917	All Organisms → cellular organisms → Bacteria	1114	Open in IMG/M
3300016341\|Ga0182035_10807714	Not Available	823	Open in IMG/M
3300016387\|Ga0182040_10531689	All Organisms → cellular organisms → Bacteria	944	Open in IMG/M
3300016387\|Ga0182040_10670779	Not Available	845	Open in IMG/M
3300016404\|Ga0182037_10966179	All Organisms → cellular organisms → Bacteria	741	Open in IMG/M
3300016404\|Ga0182037_11003972	Not Available	727	Open in IMG/M
3300016404\|Ga0182037_11187904	Not Available	670	Open in IMG/M
3300016422\|Ga0182039_10743996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	867	Open in IMG/M
3300016422\|Ga0182039_11278213	Not Available	664	Open in IMG/M
3300016445\|Ga0182038_10652470	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	913	Open in IMG/M
3300016445\|Ga0182038_11609042	Not Available	584	Open in IMG/M
3300021560\|Ga0126371_10760871	Not Available	1116	Open in IMG/M
3300021560\|Ga0126371_12298952	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300021560\|Ga0126371_12806368	Not Available	591	Open in IMG/M
3300025915\|Ga0207693_10162351	All Organisms → cellular organisms → Bacteria	1758	Open in IMG/M
3300025916\|Ga0207663_10320835	Not Available	1164	Open in IMG/M
3300025940\|Ga0207691_11092382	Not Available	664	Open in IMG/M
3300027725\|Ga0209178_1170887	Not Available	759	Open in IMG/M
3300027765\|Ga0209073_10123870	Not Available	934	Open in IMG/M
3300027874\|Ga0209465_10309987	Not Available	791	Open in IMG/M
3300031573\|Ga0310915_10850246	Not Available	641	Open in IMG/M
3300031716\|Ga0310813_11641399	Not Available	601	Open in IMG/M
3300031719\|Ga0306917_10455147	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300031719\|Ga0306917_10494093	All Organisms → cellular organisms → Bacteria → Proteobacteria	961	Open in IMG/M
3300031744\|Ga0306918_11341848	Not Available	549	Open in IMG/M
3300031833\|Ga0310917_10566253	All Organisms → cellular organisms → Bacteria	772	Open in IMG/M
3300031833\|Ga0310917_11143404	Not Available	519	Open in IMG/M
3300031879\|Ga0306919_10302649	All Organisms → cellular organisms → Bacteria → Proteobacteria	1214	Open in IMG/M
3300031879\|Ga0306919_10445843	Not Available	996	Open in IMG/M
3300031890\|Ga0306925_11826215	Not Available	581	Open in IMG/M
3300031908\|Ga0310900_10240620	Not Available	1297	Open in IMG/M
3300031910\|Ga0306923_10750704	All Organisms → cellular organisms → Bacteria → Proteobacteria	1082	Open in IMG/M
3300031910\|Ga0306923_10757700	Not Available	1076	Open in IMG/M
3300031912\|Ga0306921_10716091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Bryobacteraceae → unclassified Bryobacteraceae → Bryobacteraceae bacterium	1149	Open in IMG/M
3300031912\|Ga0306921_10757628	Not Available	1112	Open in IMG/M
3300031941\|Ga0310912_10196751	Not Available	1540	Open in IMG/M
3300031941\|Ga0310912_10470896	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	980	Open in IMG/M
3300031942\|Ga0310916_10887993	Not Available	748	Open in IMG/M
3300031942\|Ga0310916_11112937	Not Available	656	Open in IMG/M
3300031942\|Ga0310916_11654543	Not Available	519	Open in IMG/M
3300031945\|Ga0310913_10406863	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Gluconacetobacter → Gluconacetobacter johannae	966	Open in IMG/M
3300031946\|Ga0310910_11469784	Not Available	523	Open in IMG/M
3300031947\|Ga0310909_10708645	Not Available	836	Open in IMG/M
3300031947\|Ga0310909_11292470	Not Available	587	Open in IMG/M
3300031954\|Ga0306926_12252047	Not Available	605	Open in IMG/M
3300032001\|Ga0306922_10828469	All Organisms → cellular organisms → Bacteria	966	Open in IMG/M
3300032035\|Ga0310911_10721519	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300032076\|Ga0306924_11434325	Not Available	735	Open in IMG/M
3300032076\|Ga0306924_11839964	Not Available	630	Open in IMG/M
3300032261\|Ga0306920_100762866	Not Available	1422	Open in IMG/M
3300032261\|Ga0306920_100769809	All Organisms → cellular organisms → Bacteria → Proteobacteria	1415	Open in IMG/M
3300032421\|Ga0310812_10412109	Not Available	608	Open in IMG/M
3300033412\|Ga0310810_10404956	Not Available	1406	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.19%
Host-Associated	Host-Associated	14.81%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	85.19%
Plants	Host-Associated → Plants	14.81%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	85.19%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.63%
Roots	Host-Associated → Plants → Roots	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	69.44%
Loam	Environmental → Terrestrial → Soil → Loam	15.74%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	8.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.70%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	8.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	7.41%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.70%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.70%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.85%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.70%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	12.04%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	8.33%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.93%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027725	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)	Environmental	Open in IMG/M
3300027765	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A001DRAFT_101236982	3300000793	Forest Soil	MKFRDHPVLERRSGMMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCMMIYNFLKSVVGRSXAEIGDLDASHLL*
Ga0062593_1015030843	3300004114	Soil	VGGKQAMKFRDHPVLECRSRMILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0062593_1025121691	3300004114	Soil	AIIDRRMLMTAEPRAKKFRDYPSLTRRSGIRLWPPAWSNAYRDKKSWPVGEIGTLEKAWMHELLDRCVFLYIEHNGFRYTGSMYFDDPGSCLLVYNFFQSAVGRSIADIGDSDISCFL*
Ga0066395_109332292	3300004633	Tropical Forest Soil	MLWPPQWSNPYQPKEAWPHGEIGTLESVFMHELLDRCVFLHMRQDVFQYIGSLYFEERAYCMMMYDFLKSVVGRSIAEIGDSDVSHLL*
Ga0062591_1025447761	3300004643	Soil	WNSDRFNRTEFSFSVGGKQAMKFRDHPVLECRSRMILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0066388_1007017982	3300005332	Tropical Forest Soil	MRFRDHPVLERKSGMILWPPQWSNAYQPKDVWPRGEIGTLESVWIHELLDKCVFLSVRDDVFHYTGSMYFDDPASCVTGFNFLKSVVGLPTAEIGDLDVSDLL*
Ga0066388_1012651132	3300005332	Tropical Forest Soil	MRFRDHPVLERRSGMILWPPQWSNVYQAKEHWPHGEIGKLEDIWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPDSCMMVYKFLKSVVGRSIAEIGDSDVSHLL*
Ga0066388_1025246432	3300005332	Tropical Forest Soil	MKFRDLRVLERRSGMMLWPPQWSNTYQPRKDWPHGEIGTLESVWMHELLAKCVFLHVRHDGFQYIGSLYFDDRDSCMMVFNFLTSVVGRSIAEIGDLDVSHLC*
Ga0066388_1027366742	3300005332	Tropical Forest Soil	MLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCVMIYSFLKSVVGRSIAEIGDLDASHLL*
Ga0066388_1033384111	3300005332	Tropical Forest Soil	MKFRDHPVLKRKSGMILWPPLWSQPDQSRNHWPRGEIGTLENVWMNEFLDRALFLWIEHDGSQYTGSMYFDDPAGCMMVFDLLKSVVGRSIADIGDLDVSHLL*
Ga0070661_1006449572	3300005344	Corn Rhizosphere	MKFRDHPVLECRSRMILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0070671_1005777962	3300005355	Switchgrass Rhizosphere	MKFRDHPVLECRSGMKLWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0070709_116392802	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	PVLECRSGMKLWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0066903_1001112736	3300005764	Tropical Forest Soil	MATANMPGASDTIAGRTQKQPNTRICSPMRFRDHPVLERKSGMILWPPQWSNAYQPKDVWPRGEIGTLESVWIHELLDKCVFLSVRDDVFHYTGSMYFDDPASCVTGFNFLKSVVGLPTAEIGDLDVSDLL*
Ga0066903_1003557223	3300005764	Tropical Forest Soil	MRFRDHPVLKRRSGVILWPPHWSSAYQPKQWWPRGEIGALENVSMHELLDRCIFLHIRHDVFYYVGSMYFDDPGSCMMVYKFFKSVVGRSIADIGDLDVSHLL*
Ga0066903_1010200603	3300005764	Tropical Forest Soil	MTMITKTYADLCDGTPDRFNRADFSLSFGGKQPMKFRDHPVLERKSGMKLWPPLWSNAYQAKKYWPDGEIGMLENVSMHELLDRCIFLSIRHDVFHYVGSMYFDDPGSCMMIYSFLKSVVGRSTADIGDSDVSHLL*
Ga0066903_1016787072	3300005764	Tropical Forest Soil	MLWPPQWSNPYQPKEAWPHGEIGTLESVFMHELLDRCVFLHMRQDVFQYIGSLYFEDRASCMMMYDFLKSVVGRSIAEIGDSDVSHLL*
Ga0066903_1036299841	3300005764	Tropical Forest Soil	VLERKSGMMLWPPLWSNIYQGKENWPRGEIGTLEVVWMHELLDKCVFLYVRQDVFGYTGSMYFDDPGSCMMIYNFLKSVVGRSISDIGDLDVAHLL*
Ga0066903_1072100402	3300005764	Tropical Forest Soil	MKLWPPDWSNAYQAKERWPHDEIGMVENVSMHELLDRCIFLHVKHDVFYYVGSMYFDDRASSMMVYTFLKSVVGRSIAEIGDLDVSHLL*
Ga0070712_1001714094	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	FSVGGKQAMKFRDHPVLECRSGMKLWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0097621_1009321161	3300006237	Miscanthus Rhizosphere	MILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0068871_1017442872	3300006358	Miscanthus Rhizosphere	MDRKNLYPSSLRWNSDRFNRTEFSFSVGGKQAMKFRDHPVLECRSRMILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0079222_100026765	3300006755	Agricultural Soil	MKFRDLPVLERKSGMMLWPPPWSSTYQPKENWPRGEIGTRESAWMHELLDRCVFLYVSHDGFHYTGHMYFDDASSCMMVFNFLQSVVGYSIAEIAELDVSHLL*
Ga0079221_100125924	3300006804	Agricultural Soil	MKFRDLPVLERKSGMMLWPPPWSSTYQPKENWPRGEIGTLESAWMHELLDRCVFLYVSHDGFHYTGHMYFDDASSCMMVFNFLQSVVGYSIAEIAELDVSHLL*
Ga0079220_100628433	3300006806	Agricultural Soil	MKFRDLPVLERKSGMRLWPPPWSSTYQPKENWPRGEIGTLESAWMHELLDRCVFLYVSHDGFHYTGHMYFDDASSCMMVFNFLQSVVGYSIAEIAELDVSHLL*
Ga0126373_122520291	3300010048	Tropical Forest Soil	RMEVPMKFRDHPALRRMSGRMLWPPQWSNTNQPREVWPGGEIGTLERVWTYELLDTSVFLYMRHDAFRYISILYFGEDRASCMMIYGFLKSVVGRSIAEIGDLDISHLL*
Ga0126372_106327392	3300010360	Tropical Forest Soil	SMKFRDHPVLERRSGMMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCVMIYSFLKSVVGRSIAEIGDLDASHLL*
Ga0126378_120672881	3300010361	Tropical Forest Soil	WPRGEIGTLERVWMHELLHRCVFLWVTYDGLQYTGSMYFDDHESCMMVFNFLKSVVGRSITEIGDWDVSHLL*
Ga0126378_121098981	3300010361	Tropical Forest Soil	MKFRDHPVLERRSGMMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSVYFDDRASCMMIYNFLKSAVGRSIAEIGDLDASHLL*
Ga0126379_126666881	3300010366	Tropical Forest Soil	MILWPPQWSNAYQAKERWPHGEIGTLESVWIHELLDKCVFLSVRDDVFHYTGSMYFDDRASCMMVFNFLKSVVGRPTAEIGDLDVSHLF*
Ga0126379_128717321	3300010366	Tropical Forest Soil	FNSGTSRNLKLPLGEIGTLKSVWMHELLDRCVFLSIKHNGFQHTGHMYFDDHDSCRMVFNFLKSAVGRSIAEIGDLDASHLL*
Ga0126379_135157471	3300010366	Tropical Forest Soil	MMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCMMIYNFLKSVVGRS
Ga0126379_137027492	3300010366	Tropical Forest Soil	LIIAVINAIYTPTAMKFRDLPVLERRSGVILWPPQWSNVYQAKEHWPHGEIGTLEDVWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPRSCVMVYKFLKSVVRRSIADIGDSDV
Ga0126381_1019119601	3300010376	Tropical Forest Soil	MKFRDHPVLERRSGMMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCVMIYSFLKSVVGRSIAEIGDLDASHLL*
Ga0126381_1025495172	3300010376	Tropical Forest Soil	MMTIIKIYTLPCEWNFARFNRTDFSFSLGGKHAMKFRDHPILERRSGMILWPPQWSNVYQAKEHWPHGEIGTLEDVWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPRSCVMVYKFLKSVVRRSIADIGDSDVSHLL*
Ga0126381_1034449563	3300010376	Tropical Forest Soil	HPVLERKSGMILWQPQGSNAYQPKDVWPRGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDRASCMVVFNFLKSVVGRPTADIGDLDVSDLL*
Ga0126383_129215691	3300010398	Tropical Forest Soil	RGEIGTLESVWMHEILDKCVFLSVRDDVFHYTGSMYFDDRASCMVVFNFLKSVVGRPTADIGDLDVSDLL*
Ga0134121_120947772	3300010401	Terrestrial Soil	RWNSDRFNRTEFSFSVGGKQAMKFRDHPVLECRSRMILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0126369_114711711	3300012971	Tropical Forest Soil	SGLMLWPPQWSNPYQPKEAWPHGEIGTLESVFMHELLDRCVFLHMRQDVFQYIGSLYFEDRASCMMMYDFLKSVVGRSIAEIGDSDVSHLL*
Ga0126369_121045322	3300012971	Tropical Forest Soil	MKFRELPVLERKSGMLLWPPQWASAYGPKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCVMIYSFLKSVVGRSIAEIGDLDASHLL*
Ga0157378_117077872	3300013297	Miscanthus Rhizosphere	SVGGKQAMKFRDHPVLECRSRMILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL*
Ga0132258_107053423	3300015371	Arabidopsis Rhizosphere	MKFREHPALKRKSGMIMWPPQWSSAYQPKERWPHGEIGTLDSAWMHELLDRCVFLSVRDDVFHYAGSMCFDDPGSCMMVYEFLKSVAGRSTSDIGDSDVSHLL*
Ga0132258_111877771	3300015371	Arabidopsis Rhizosphere	MIGQIPMKFRDLPVLERRSGMMLWPPPWSSTDQPEAKWPHGEIGTLESAWMHELLDRCVFLYVSDDAFHYTGHMYFDDHDSCMMIFNFLKSVVGRSIADIGDLDISHLL*
Ga0132258_113239412	3300015371	Arabidopsis Rhizosphere	MILWPPQWSSAYRDKKDWPHGEFGMLETVWMHELLDRCVFLYIRDDVFHYTGSMYFDDPGSCTMVYEFLKSVVGRSTADIGDSDISHLL*
Ga0132256_1002625882	3300015372	Arabidopsis Rhizosphere	MKFRDHPVLERRSGIILWPPQWSNAYQPKKDWPHGEIGTLESVWMHELLDRCVFLYVRHEGFQYTGSMYFDDPDSCMMVYNFLKSAVGRSIAEIGDSDISHLL*
Ga0132257_1002391882	3300015373	Arabidopsis Rhizosphere	MKFRNHPAVKRRSGMILWPPQWSSAYRDKKDWPHGKFGMLETVWMHELLDRCVFLYIRDDVFHYTGSMYFDDPGSCTMVYEFLKSVVGRSTADIGDSDISHLL*
Ga0132257_1009711582	3300015373	Arabidopsis Rhizosphere	MKLLTDSIGLTSRDGKQATRFREHPALKRRSGMILWPPQWSSAYQAKDRWPHGEIGKLESVWMHELLDRCVFLYVRNDVFHYTGSMYFDDPASCMMVYKFLKSVVDRSIAEIGELDVSHLL*
Ga0132257_1032911742	3300015373	Arabidopsis Rhizosphere	PVLERRSGMMLWPPSWSSTYQPEAKCPHGEIGTLESAWMHELLDRCVFLYVSDDSFHYTGHMYFDDHDSCMMIFNLLKSVVGRSIADIGDLDISHLL*
Ga0132257_1043910511	3300015373	Arabidopsis Rhizosphere	GTPTDSTGAVLISVSGKEAMKFREHPALKRKSGMIMWPPQWSSAYQPKERWPHGEIGTLDSAWMHELLDRCVFLSVRDDVFHYAGSMCFDDPGSCMMVYEFLKSVAGRSTSDIGDSDVSHLL*
Ga0132255_1001694203	3300015374	Arabidopsis Rhizosphere	MKLLTDSSGLTSRGGKQAVRFRDHPALKRRSGMILWPPQWSSAYQAKDRWPHGEIGKLESVWMHELLDRCVFLYVRNDVFHYTGSMYFDDPASCMMVYKFLKSVVDRSIAEIGELDVSHLL*
Ga0132255_1008861701	3300015374	Arabidopsis Rhizosphere	MTAEPRAMKFRDYPLLTRRSGIRLWPPAWSNAYQDKKSWPVGEIGTLEKAWMHELLDRCVFLYIEHNGFRYTGSMYFDDPGSCLLVYNFFQSAVGRSIADIGDSDISYLL*
Ga0182036_111131841	3300016270	Soil	MITKTYTFSYGASNPIHWTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0182036_113813352	3300016270	Soil	GRTQKQPNAICSPMRFRDHPVLERKSGMILWPPQWSNAYQAKEQWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0182041_103733011	3300016294	Soil	MKFRDHPVLERRSGMMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0182033_102559153	3300016319	Soil	MILWPPQWSNAYQAKEQWPHGEIGTLESVWMHGLLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0182035_104309172	3300016341	Soil	MRFRDHPVLERKSGMILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0182035_108077142	3300016341	Soil	MIGSDNNDDHKNLYLFYGASNPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0182040_105316892	3300016387	Soil	MIAKTYTVSYGASNPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHNGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0182040_106707792	3300016387	Soil	ANMPRASDTIAGRTQKQPNAICSPMRFRDHPVLERKSGMILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0182037_109661792	3300016404	Soil	MATANMPGANDTIAGPNTRICSPMRFRDHPVLERKSGMTLWPPQWSNAYQAKEQWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0182037_110039722	3300016404	Soil	MMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCVMIYSFLKSVVGRSIAEIGDLDASHLL
Ga0182037_111879042	3300016404	Soil	MIAKTYTFSYGASNPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDDRASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0182039_107439961	3300016422	Soil	IGFDNSSDQSNLYLSAMKFRDLSVLERRSGIILWPPQWSNVYQAKEHWPHGEIGKLEDVWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPGSCTMVYKFSKSAVGCSIADIGDSDISHLL
Ga0182039_112782132	3300016422	Soil	MIAKTYTFSYGASNPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHNGFRYAGSMDFDERASCMMVYKFLKSVVGRSSADIGDSDVSHLLLMTSEKANTPEP
Ga0182038_106524703	3300016445	Soil	YQAKEHWPHGEIGTLEDVWMHELLERCVFLHIKHNGFRYAGSMDFDERASCMMVYKFLKSVVGRSTVEIGDSDVAHLL
Ga0182038_116090421	3300016445	Soil	MKFRDLSVLERRSGIILWPPQWSNVYQAKEHWPHGEIGKLEDVWMHKLLDKYVFIHVRHDVFGYTGSMSFDDPGSCMMVYKFLKSLVGRSIADIGDSDVSHLL
Ga0126371_107608712	3300021560	Tropical Forest Soil	MLWPPQWSNPYQPKEAWPHGEIGTLESAFMHELLDRCVFLHMRQAVFQYIGSLYFEDRASCMMMYDFLKSVVGRSIAEIGDSDVSHLL
Ga0126371_122989522	3300021560	Tropical Forest Soil	MKFRDLRVLERRSGMMLWPPQWSNTYQPRKDWPHGEIGTLESVWMHELLAKCVFLHVRHDGFQYIGSLYFDDRDSCMMVFNFLTSVVGRSIAEIGDLDVSHLC
Ga0126371_128063682	3300021560	Tropical Forest Soil	MLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0207693_101623514	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	DFSVGGKQAMKFRDHPVLECRSGMKLWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL
Ga0207663_103208352	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKFRDHPVLECRSRMILWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL
Ga0207691_110923821	3300025940	Miscanthus Rhizosphere	MELRPIQPDQFSLSVGGKEAMKFRDHPVLECRSGMKLWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL
Ga0209178_11708872	3300027725	Agricultural Soil	MKFRDLPVLERKSGMMLWPPPWSSTYQPKENWPRGEIGTLESAWMHELLDRCVFLYVSHDGFHYTGHMYFDDASSCMMVFNFLQSVVGYSIAEIAELDVTHLL
Ga0209073_101238701	3300027765	Agricultural Soil	PKENWPRGEIGTLESAWMHELLDRCVFLYVSHDGFHYTGHMYFDDASSCMMVFNFLQSVVGYSIAEIAELDVSHLL
Ga0209465_103099871	3300027874	Tropical Forest Soil	MLWPPQWSNPYQPKEAWPHGEIGTLESAFMHELLDRCVFLHMRQDVFQYIGSLYFEERAYCMMMYDFLKSVVGRSIAEIGDSDVSHLL
Ga0310915_108502462	3300031573	Soil	ITMIAKTYTVSYGASNPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDDRASCMMVYKFLKSVVGCSTADIGDLDVSQFL
Ga0310813_116413991	3300031716	Soil	YRDKKDWPHGEFGMLETVWMHEPLDRCVFLSVRDDVYGYTGSMYFGDPGSCMMVYSFLKSVAGRSTSDIGDLDVSHSYLL
Ga0306917_104551472	3300031719	Soil	MATANMPRASDTIAGRTQKQPNAICSPMRFRDHPVLERKSGMILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0306917_104940931	3300031719	Soil	EIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0306918_113418481	3300031744	Soil	NAYQAKKHWPDGEIGTLENVSMHELLDRCVFLYVRHDVFHYVGSMYFDDRASCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0310917_105662531	3300031833	Soil	MKFRDLSVLERRSGIILWPPQWSNVYQAKEHWPHGEIGKLEDVWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPGSCTMVYKFSKSAVGCSI
Ga0310917_111434041	3300031833	Soil	WPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0306919_103026491	3300031879	Soil	AMKFRDLSVLERRSGIILWPPQWSNVYQAKEHWPHGEIGKLEDVWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPGSCTMVYKFSKSAVGCSIADIGDSDISHLL
Ga0306919_104458431	3300031879	Soil	MLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCVFLYVRHDVFHYVGSMYFDDRASCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0306925_118262152	3300031890	Soil	NAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0310900_102406202	3300031908	Soil	MKLWPPQWSNAYQAKERWPHGEIGKLESVWMHELLDRCVFLSVRDGVFHYTGSMYFDDPGSCMMVYKFLNSVVGHSTADIGDSDVSHLL
Ga0306923_107507041	3300031910	Soil	AYQAKQHWPDGEIGTLENVSMHELLDRCVFLYVRHDVFHYVGSMYFDDRASCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0306923_107577003	3300031910	Soil	MILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0306921_107160911	3300031912	Soil	MKFRDLSVLERRSGIILWPPQWSNVYQAKEHWPHGEIGKLEDVWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPGSCTMVYKFSKSAVGCSIADIGDSDISHLL
Ga0306921_107576281	3300031912	Soil	MSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0310912_101967513	3300031941	Soil	MLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCVFLYVRHDVFHYVGSMYFDDRVSCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0310912_104708962	3300031941	Soil	MLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0310916_108879932	3300031942	Soil	MIAKTYTVSYGASNPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0310916_111129371	3300031942	Soil	QAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0310916_116545431	3300031942	Soil	VASTMSNAYQAKQHWPDGEIGTLENVSMHELLDRCIFLYVRHDVFQYVGSMYFDDRASCVMIYSFLKSVVGRSIAEIGDLDASHLL
Ga0310913_104068631	3300031945	Soil	TYTFSYGASNPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHNGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0310910_114697842	3300031946	Soil	NPIHRTDFGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0310909_107086452	3300031947	Soil	TQKQPNAICSPMRFRDHPVLERKSGMILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0310909_112924701	3300031947	Soil	FGFVGGKQSMRFRDLSVLKRRSGMLLWPPQWASAYRPKQHWPHGEIGTLEDVWMHELLERCVFLHIKHDGFRYAGSMDFDERASCMMVYKFLKSVVGHSTVEIGDSDVSHLL
Ga0306926_122520471	3300031954	Soil	MKFRDHPVLERRSGMMLWPPQWSNAYQAKQHWPDGEIGTLENVSMHELLDRCVFLYVRHDVFHYVGSMYFDDRASCMMIYNFLKSVVGRSIAEIGDLDASHLL
Ga0306922_108284692	3300032001	Soil	MATANMPRASDTIAGRTQKQPNAICSPMRFRDHPVLERKSGMILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGEIDVSHML
Ga0310911_107215191	3300032035	Soil	MATANMPGANDTIAGPNTRICSPMRFRDHPVLERKSGMTLWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0306924_114343251	3300032076	Soil	YQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0306924_118399642	3300032076	Soil	MKFRDLSVLERRSGIILWPPQWSNVYQAKEHWPHGEIGKLEDVWMHKLLDKCVFLYVRHDVFGYTGSMSFDDPGSCMMVYKFLKSVVGHSTVEIGDSDVAHLL
Ga0306920_1007628661	3300032261	Soil	SIRSNEQGKSRNMATANMPRASDTIAGPNTRVCSPMRFRDHPVLERKSGMILWPPQWSNAYQAKERWPHGEIGTLESVWMHELLDKCVFLSVRDDVFHYTGSMYFDDPGSCMMVFNFLKSVVGRPTAEIGDLDVSHLL
Ga0306920_1007698093	3300032261	Soil	MILWPPQWSNVYQAKEHWPHGEIGTLEDVWMHKLLDKYVFIHVRHDVFGYTGSMSFDDPGSCMMVYKFLKSLVGRSIADIGDSDVSHLL
Ga0310812_104121091	3300032421	Soil	MKFRDHPVLERRSGIILWPPQWSNAYQPKKDWPHGEIGTLESVWMHELLDRCVFLYVRHEGFQYTGSMYFDDPDSCMMVYNFLKSAVGRSIAEIGDSDISHLL
Ga0310810_104049561	3300033412	Soil	VPPQWSSAYRDKKDWPHGEFGMLETVWMHEPLDRCVFLSVRDDVYGYTGSMYFGDPGSCMMVYSFLKSVAGRSTSDIGDLDVSHSYLL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F090722

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences