NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090679

Metagenome / Metatranscriptome Family F090679

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090679
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 43 residues
Representative Sequence VLAVAHVLGLLLATFALTYALPVGCSLLMGDGLWPKFLLAAALTA
Number of Associated Samples 97
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 82.41 %
% of genes near scaffold ends (potentially truncated) 99.07 %
% of genes from short scaffolds (< 2000 bps) 87.96 %
Associated GOLD sequencing projects 95
AlphaFold2 3D model prediction Yes
3D model pTM-score0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (75.000 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(29.630 % of family members)
Environment Ontology (ENVO) Unclassified
(25.000 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(53.704 % of family members)



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Multiple Sequence Alignments

Select alignment to view:      


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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 53.42%    β-sheet: 0.00%    Coil/Unstructured: 46.58%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF02254TrkA_N 61.11
PF02080TrkA_C 30.56
PF13361UvrD_C 4.63
PF01594AI-2E_transport 2.78
PF02628COX15-CtaA 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG0628Predicted PurR-regulated permease PerMGeneral function prediction only [R] 2.78
COG1612Heme A synthaseCoenzyme transport and metabolism [H] 0.93


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A75.00 %
All OrganismsrootAll Organisms25.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002245|JGIcombinedJ26739_100363579Not Available1328Open in IMG/M
3300002245|JGIcombinedJ26739_101191886Not Available650Open in IMG/M
3300002915|JGI25387J43893_1004709All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1775Open in IMG/M
3300005175|Ga0066673_10027502All Organisms → cellular organisms → Bacteria → Proteobacteria2699Open in IMG/M
3300005439|Ga0070711_101314135All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales628Open in IMG/M
3300005454|Ga0066687_10017517All Organisms → cellular organisms → Bacteria → Proteobacteria2940Open in IMG/M
3300005569|Ga0066705_10371964All Organisms → cellular organisms → Bacteria → Proteobacteria898Open in IMG/M
3300005764|Ga0066903_107312356All Organisms → cellular organisms → Bacteria → Proteobacteria571Open in IMG/M
3300006046|Ga0066652_100069506All Organisms → cellular organisms → Bacteria → Proteobacteria2736Open in IMG/M
3300006175|Ga0070712_102050666All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae501Open in IMG/M
3300006176|Ga0070765_101970124All Organisms → cellular organisms → Bacteria → Proteobacteria547Open in IMG/M
3300006797|Ga0066659_10193251All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1484Open in IMG/M
3300009093|Ga0105240_12707051Not Available511Open in IMG/M
3300009545|Ga0105237_12162764Not Available566Open in IMG/M
3300010303|Ga0134082_10171099Not Available883Open in IMG/M
3300010320|Ga0134109_10134331Not Available882Open in IMG/M
3300010361|Ga0126378_11660826Not Available726Open in IMG/M
3300010362|Ga0126377_10760320Not Available1025Open in IMG/M
3300010376|Ga0126381_101360770Not Available1026Open in IMG/M
3300010396|Ga0134126_12465698Not Available566Open in IMG/M
3300012210|Ga0137378_11273313Not Available652Open in IMG/M
3300012930|Ga0137407_10542249Not Available1089Open in IMG/M
3300012971|Ga0126369_11586634Not Available744Open in IMG/M
3300012989|Ga0164305_11779519Not Available556Open in IMG/M
3300015054|Ga0137420_1034620Not Available1009Open in IMG/M
3300015054|Ga0137420_1111836Not Available1028Open in IMG/M
3300016341|Ga0182035_10792944Not Available831Open in IMG/M
3300016445|Ga0182038_11469616Not Available611Open in IMG/M
3300016445|Ga0182038_11479293Not Available609Open in IMG/M
3300017959|Ga0187779_11044874Not Available569Open in IMG/M
3300017973|Ga0187780_11316244Not Available531Open in IMG/M
3300017993|Ga0187823_10020425All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1662Open in IMG/M
3300017994|Ga0187822_10026843Not Available1509Open in IMG/M
3300018060|Ga0187765_10466332Not Available793Open in IMG/M
3300018089|Ga0187774_10108612Not Available1383Open in IMG/M
3300021170|Ga0210400_11002373Not Available679Open in IMG/M
3300021170|Ga0210400_11564825Not Available521Open in IMG/M
3300021171|Ga0210405_10178094All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1685Open in IMG/M
3300021403|Ga0210397_11523438Not Available519Open in IMG/M
3300021420|Ga0210394_11370369Not Available602Open in IMG/M
3300021433|Ga0210391_11547362Not Available508Open in IMG/M
3300021474|Ga0210390_10406295Not Available1151Open in IMG/M
3300021474|Ga0210390_11528588Not Available527Open in IMG/M
3300021476|Ga0187846_10407659Not Available558Open in IMG/M
3300021477|Ga0210398_10987107Not Available672Open in IMG/M
3300021479|Ga0210410_10085207All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2781Open in IMG/M
3300022894|Ga0247778_1025100Not Available1426Open in IMG/M
3300025903|Ga0207680_10857449Not Available651Open in IMG/M
3300025916|Ga0207663_10547495Not Available904Open in IMG/M
3300025921|Ga0207652_10403785Not Available1233Open in IMG/M
3300025929|Ga0207664_10332885All Organisms → cellular organisms → Bacteria1341Open in IMG/M
3300026281|Ga0209863_10160006Not Available657Open in IMG/M
3300026295|Ga0209234_1086477Not Available1188Open in IMG/M
3300026298|Ga0209236_1215364Not Available684Open in IMG/M
3300026305|Ga0209688_1039335Not Available898Open in IMG/M
3300026308|Ga0209265_1000906All Organisms → cellular organisms → Bacteria → Proteobacteria8647Open in IMG/M
3300026376|Ga0257167_1046267Not Available665Open in IMG/M
3300026548|Ga0209161_10560256Not Available510Open in IMG/M
3300027502|Ga0209622_1011182Not Available1510Open in IMG/M
3300027610|Ga0209528_1084252Not Available703Open in IMG/M
3300027667|Ga0209009_1042072Not Available1137Open in IMG/M
3300027826|Ga0209060_10422648Not Available606Open in IMG/M
3300027829|Ga0209773_10112363Not Available1128Open in IMG/M
3300027867|Ga0209167_10833451Not Available501Open in IMG/M
3300027879|Ga0209169_10454327Not Available673Open in IMG/M
3300028775|Ga0302231_10091496Not Available1269Open in IMG/M
3300028792|Ga0307504_10000409All Organisms → cellular organisms → Bacteria → Proteobacteria8743Open in IMG/M
3300031027|Ga0302308_10131512All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1670Open in IMG/M
3300031047|Ga0073995_10035545Not Available511Open in IMG/M
3300031057|Ga0170834_101029680Not Available625Open in IMG/M
3300031544|Ga0318534_10494281Not Available699Open in IMG/M
3300031679|Ga0318561_10581532Not Available617Open in IMG/M
3300031708|Ga0310686_101449134Not Available511Open in IMG/M
3300031715|Ga0307476_10014155All Organisms → cellular organisms → Bacteria → Proteobacteria5061Open in IMG/M
3300031720|Ga0307469_12346100Not Available520Open in IMG/M
3300031740|Ga0307468_100651788Not Available870Open in IMG/M
3300031744|Ga0306918_10147918All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1731Open in IMG/M
3300031751|Ga0318494_10061365All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria2008Open in IMG/M
3300031751|Ga0318494_10160498Not Available1269Open in IMG/M
3300031751|Ga0318494_10786106Not Available558Open in IMG/M
3300031751|Ga0318494_10838926Not Available538Open in IMG/M
3300031753|Ga0307477_10103317All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria1982Open in IMG/M
3300031765|Ga0318554_10050303All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Woeseiaceae → Woeseia → Woeseia oceani2280Open in IMG/M
3300031771|Ga0318546_10755298Not Available684Open in IMG/M
3300031777|Ga0318543_10536176Not Available524Open in IMG/M
3300031778|Ga0318498_10010160All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3759Open in IMG/M
3300031781|Ga0318547_10107164Not Available1604Open in IMG/M
3300031782|Ga0318552_10001211All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales8827Open in IMG/M
3300031793|Ga0318548_10012260All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria3408Open in IMG/M
3300031819|Ga0318568_10052188All Organisms → cellular organisms → Bacteria → Proteobacteria2362Open in IMG/M
3300031835|Ga0318517_10402766Not Available618Open in IMG/M
3300031890|Ga0306925_11019457Not Available842Open in IMG/M
3300031910|Ga0306923_10771523Not Available1064Open in IMG/M
3300032001|Ga0306922_10901243Not Available918Open in IMG/M
3300032042|Ga0318545_10154419Not Available816Open in IMG/M
3300032067|Ga0318524_10700556Not Available534Open in IMG/M
3300032091|Ga0318577_10198277Not Available960Open in IMG/M
3300032160|Ga0311301_10827702Not Available1265Open in IMG/M
3300032180|Ga0307471_103136540Not Available586Open in IMG/M
3300032805|Ga0335078_10822761Not Available1128Open in IMG/M
3300032805|Ga0335078_11231329Not Available861Open in IMG/M
3300032829|Ga0335070_11320658Not Available660Open in IMG/M
3300032955|Ga0335076_10402122All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales1254Open in IMG/M
3300032955|Ga0335076_10500424Not Available1098Open in IMG/M
3300033134|Ga0335073_12154474Not Available502Open in IMG/M
3300033290|Ga0318519_10136766Not Available1358Open in IMG/M
3300033290|Ga0318519_10210568Not Available1112Open in IMG/M
3300033808|Ga0314867_090936Not Available709Open in IMG/M



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil29.63%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil6.48%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil6.48%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil5.56%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil4.63%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil4.63%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil3.70%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil3.70%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland3.70%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.78%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil2.78%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere2.78%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment1.85%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil1.85%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil1.85%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa1.85%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.85%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil0.93%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.93%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.93%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.93%
Prmafrost SoilEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.93%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.93%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.93%
Plant LitterEnvironmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter0.93%
BiofilmEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.93%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002245Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)EnvironmentalOpen in IMG/M
3300002915Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cmEnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005454Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136EnvironmentalOpen in IMG/M
3300005569Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154EnvironmentalOpen in IMG/M
3300005764Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)EnvironmentalOpen in IMG/M
3300006046Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101EnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006176Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010320Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012989Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MGEnvironmentalOpen in IMG/M
3300015054Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300016341Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170EnvironmentalOpen in IMG/M
3300016445Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108EnvironmentalOpen in IMG/M
3300017959Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MGEnvironmentalOpen in IMG/M
3300017973Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MGEnvironmentalOpen in IMG/M
3300017993Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3EnvironmentalOpen in IMG/M
3300017994Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2EnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300021170Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-MEnvironmentalOpen in IMG/M
3300021171Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021433Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-OEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021476Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)EnvironmentalOpen in IMG/M
3300021477Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-OEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300022894Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L049-202B-5EnvironmentalOpen in IMG/M
3300025903Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025929Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026281Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 (SPAdes)EnvironmentalOpen in IMG/M
3300026295Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026298Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_40cm (SPAdes)EnvironmentalOpen in IMG/M
3300026305Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_142 (SPAdes)EnvironmentalOpen in IMG/M
3300026308Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)EnvironmentalOpen in IMG/M
3300026376Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-BEnvironmentalOpen in IMG/M
3300026548Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes)EnvironmentalOpen in IMG/M
3300027502Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027610Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)EnvironmentalOpen in IMG/M
3300027667Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027826Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027829Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)EnvironmentalOpen in IMG/M
3300027867Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)EnvironmentalOpen in IMG/M
3300027879Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)EnvironmentalOpen in IMG/M
3300028775Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300031027Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_E3_3EnvironmentalOpen in IMG/M
3300031047Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1B (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300031057Oak Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031544Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26EnvironmentalOpen in IMG/M
3300031679Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23EnvironmentalOpen in IMG/M
3300031708FICUS49499 Metagenome Czech Republic combined assemblyEnvironmentalOpen in IMG/M
3300031715Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031744Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)EnvironmentalOpen in IMG/M
3300031751Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24EnvironmentalOpen in IMG/M
3300031753Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515EnvironmentalOpen in IMG/M
3300031765Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22EnvironmentalOpen in IMG/M
3300031771Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031778Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24EnvironmentalOpen in IMG/M
3300031781Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20EnvironmentalOpen in IMG/M
3300031782Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20EnvironmentalOpen in IMG/M
3300031793Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21EnvironmentalOpen in IMG/M
3300031819Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21EnvironmentalOpen in IMG/M
3300031835Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21EnvironmentalOpen in IMG/M
3300031890Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032042Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26EnvironmentalOpen in IMG/M
3300032067Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300032805Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2EnvironmentalOpen in IMG/M
3300032829Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3EnvironmentalOpen in IMG/M
3300032955Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5EnvironmentalOpen in IMG/M
3300033134Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300033808Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_100_20EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGIcombinedJ26739_10036357923300002245Forest SoilVLAVAHFLGLLLATFALAYALPVACSLAMADGLWPTFLLAAALTAGCGIVLAGATLRF
JGIcombinedJ26739_10119188623300002245Forest SoilVLAVAHVLGLLLAFFGATYLLPIGCSIFTGDGLALFFVVA
JGI25387J43893_100470913300002915Grasslands SoilVLAVAHVLGLLLATFALTYALPVGCSLLMGDGLWPKFLLAAALTA
Ga0066673_1002750233300005175SoilVPAVAHVLGLLLATFALAYALPVGCSLLMGDGLWPKFLLA
Ga0070711_10131413513300005439Corn, Switchgrass And Miscanthus RhizosphereVLAVAHVLGWLLASFALSYVLPIGCALLLGDGLWTRFLLAAAITAAV
Ga0066687_1001751713300005454SoilVLAVAHFLGLLLSSFALSYALPIGCSLLLADHLWPKFLLAAAITAGCGLALAIA
Ga0066705_1037196423300005569SoilVPAVAHVLGLLLATFALAYALPIGCSLLMGDGLWPKFLLAAALTA
Ga0066903_10731235613300005764Tropical Forest SoilMLAVAHVLGSLLAAFALSCLAPLACSLIMADGLWRVFL
Ga0066652_10006950613300006046SoilVPAVAHVLGLLLATFALAYALPVGCSLLMGDGLWPKFLLAAALTAGCGLVLA
Ga0070712_10205066613300006175Corn, Switchgrass And Miscanthus RhizosphereVLAVAHVLGLLLASFALTYALPIGCALLLGDGLWTRFL
Ga0070765_10197012413300006176SoilLLAVLHVLGLLLASFATSCLLPLACSLWYADGLWPHFLITA
Ga0066659_1019325123300006797SoilVLAVAHVLGLLLAAFGVTYILPIGCSVIMHDGLWP
Ga0105240_1270705113300009093Corn RhizosphereVLAVAHVLGLLLATFGVTYVLPVGCSIIMEDGLWPQFL
Ga0105237_1216276413300009545Corn RhizosphereMLAVAHVLGLLLAISGAAYALPIACSLIMGDGFAGIFLVA
Ga0134082_1017109913300010303Grasslands SoilVLAVAHVLGLLLATFALTYALPVGCSLLMGDGLWPKFL
Ga0134109_1013433113300010320Grasslands SoilVLAVAHVLGLLLATFALAYALPVGCSLLMGDGLWPKFL
Ga0126378_1166082613300010361Tropical Forest SoilVLSVAHVLGLLLATFALTYALPVACSLLLADGLWPRFLLAAAITAGCGV
Ga0126377_1076032013300010362Tropical Forest SoilVAAVAHALGLLLATFALTYLLPVGCSLLMGDGLWPQFVLAAALTAG
Ga0126381_10136077013300010376Tropical Forest SoilVLAVAHVLGLLLVTFALVCLLPAGCSLLLADGLWTQFLLVAALSAACGGLLIA
Ga0134126_1246569813300010396Terrestrial SoilMLGVAHVLGLVLAIFGIAYALPTGCSIVMGDGLWPQFLLAAAINSG
Ga0137378_1127331313300012210Vadose Zone SoilVLAVAHVLGQLLAFFGATYLLPIGCSIFTGDGLALYFV
Ga0137407_1054224913300012930Vadose Zone SoilVLAVAHVLGLLLAFFGATYLLPIGCSIFTGDGLALFF
Ga0126369_1158663423300012971Tropical Forest SoilVLAVAHFLGLLLATFALTYLLPAGCSLLLGDPLWPKFLLAAAITAGA
Ga0164305_1177951913300012989SoilVLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLLAAAITA
Ga0137420_103462023300015054Vadose Zone SoilVLAVAHFLGLLLATFALAYVLPIGCSLAMADGLWP
Ga0137420_111183613300015054Vadose Zone SoilVLAVAHFLGLLLATFALAYVLPIGCSLAMADGLWPRPKFLLAAA
Ga0182035_1079294423300016341SoilVLAVAHVLGLLLAGFALTYPLPIGCSLLFGDGLAARFFLDAAIT
Ga0182038_1146961623300016445SoilVLAVAHVLGLLLAGFALTYALPIGCSLLFGDGLAARFL
Ga0182038_1147929323300016445SoilVLAVAHVLGLLLATFALTYLLPITCALLLGDPSWPRFLLAAAITASCGGLL
Ga0187779_1104487413300017959Tropical PeatlandVLAVAHVLGLLLAAFALSCLPPVLCSLLLADGLAPRFL
Ga0187780_1131624423300017973Tropical PeatlandVLAVAHVLGLLLAAFAFSCVPPVLCSLLLADGLAPRFLLAAAVTAGIGVAL
Ga0187823_1002042513300017993Freshwater SedimentVLAVAYLLGLLLATFALAYLLPVACSLLVGDNLWPQFLLSAAITAAAGALLA
Ga0187822_1002684313300017994Freshwater SedimentVLSVAYVLGLLLASFALTFALPVACSLAMGDGLWPKFLLAAACTAGA
Ga0187765_1046633213300018060Tropical PeatlandMLAVAHFLGLLLASFALTYLLPVICSLAFGDGLAARFL
Ga0187774_1010861223300018089Tropical PeatlandVLAVAYVLGLLLASFALSFALPIGCSLLMADGLWPKFLLAAAIA
Ga0210400_1100237313300021170SoilVLAVAHVLGLLLASFALTYALPIGCALLLGDGLWTRFLLAAA
Ga0210400_1156482523300021170SoilMLGVAHVLGLVLAIFGVAYVLPVGCSIIMGDGLWL
Ga0210405_1017809413300021171SoilVLAVAHVLGLLLATFALAYLLPLGCSLFYGDGLLAQFLAAA
Ga0210397_1152343813300021403SoilVLAVAHFLGLLLATFALAYALPVGCSLVMADGLWPKFLLTAA
Ga0210394_1137036923300021420SoilVLRVANVLGWLLATFGLACLLPVGCSLIMGDGQWPHLLLAAA
Ga0210391_1154736223300021433SoilVLAVAYALGLLLATFALSFALPIACSLLMEDGLWPKFLLAAALAAGCGLALAAATVRLK
Ga0210390_1040629523300021474SoilVLRVANVLGWLLATFALACLLPVGCSLIMGDGQWPR
Ga0210390_1152858823300021474SoilVLAVAHVLGLLLASFAASYLLPLLGSLWLGDGLALH
Ga0187846_1040765913300021476BiofilmVLTVAYVLGLLLASFALSFALPVLCSLVMGDGLWPKFLLAAACTAGAGLALAAATRRRRR
Ga0210398_1098710723300021477SoilVLAVAHVLGLLLATFALAYLLPVGCSLLFGDGLLVQF
Ga0210410_1008520713300021479SoilVLAVAHVLGLLLASFAASYLLPLLGSLWLGDGLALHFLM
Ga0247778_102510023300022894Plant LitterVLAVAHVLGLLLAFFGATYALPLICSLVAGDGLALYLL
Ga0207680_1085744913300025903Switchgrass RhizosphereVFAVAHVLGLLLASFAASYAAPLLCSLWLHDGLWEHFLL
Ga0207663_1054749513300025916Corn, Switchgrass And Miscanthus RhizosphereVLAVAHALGLLLATFALTYALPIGCSLLMGDGLWPQFLLAAALAA
Ga0207652_1040378513300025921Corn RhizosphereVLGVAHVLGLLLAIFGVAYLLPVGCSIVTGDGLWPQFFIS
Ga0207664_1033288513300025929Agricultural SoilVLAVAHALGLLLATFALTYALPIGCSLLMGDGLWPQFLLAAALAAAGG
Ga0209863_1016000623300026281Prmafrost SoilVLAVAHVLGLLLASFAVTCLAPLACSLFMGDGLWRVFLLTAGAAG
Ga0209234_108647713300026295Grasslands SoilVPAVAHVLGLLLATFALAYALPIGCSLLMGDGLWPKFLLAAALTAGCGLVL
Ga0209236_121536413300026298Grasslands SoilVLAVAHVLGLLLATFALAYALPVGCSLIMADGLWGKFLLAAALTAGCGLQ
Ga0209688_103933523300026305SoilVPAVAHVLGLLLATFALAYALPIGCSLLMGDGLWPKFLLA
Ga0209265_100090673300026308SoilVLAVAHFLGLLLASFALSYALPIGCSLLLADHLWPKFLLAAAITAG
Ga0257167_104626713300026376SoilVLAVAHFLGLLLATFALAYALPVGCSLVMADGLWPKFL
Ga0209161_1056025613300026548SoilVLAVAHVLGLLLGTFALAYALPVGCSLVMADGLWPKFLLAAALTA
Ga0209622_101118213300027502Forest SoilVLAVAYALGLLLAAFALTFALPIACSLVMGDGLWPQFLLAAALLVLALAIA
Ga0209528_108425213300027610Forest SoilVLAVAHFLGLLLATFALAYALPVGCSLAMADGLWPTFLLAAALTAGCGIVLAG
Ga0209009_104207223300027667Forest SoilVLAVAHFLGLLLATFALAYALPIGCSLVMADGLWPKFLLSAALTAGCGIVLAGA
Ga0209060_1042264813300027826Surface SoilVLAVAHVLGLLLAFFGATYLVPIACSLLTGDGLTRYFLLAALVSSGT
Ga0209773_1011236313300027829Bog Forest SoilMLAVAHVLGLLLATFALAYALPVGCSLLLADGLAGRFLLAA
Ga0209167_1083345113300027867Surface SoilVLAVANVLGLLLASFSASCLLPLACSLWFGDGQWPCFVITAAIGAGC
Ga0209169_1045432713300027879SoilVFAVAHVLGLLLAAFAATCLAPLICSLLYGDGLALTFLLT
Ga0302231_1009149623300028775PalsaMLAVAHVLGLLLAAFAASCLAPLACSLLYRDGLALNFLLTA
Ga0307504_1000040963300028792SoilVLAVAHFLGLLLATFTLAYALPVGCSLVMADGLWPKFLLSAALTAGCGVVLAGAT
Ga0302308_1013151233300031027PalsaMLAVAHVLGLLLAAFAASCLAPLACSLLYRDGLALNFLL
Ga0073995_1003554523300031047SoilVLAVAHVLGLLLAFFGATYLLPIGCSIFTGDGLALFFAAGAACST
Ga0170834_10102968023300031057Forest SoilMLGVAHVLGLLLAIFGVAYVLPVGCSIITGDGLWPQFL
Ga0318534_1049428113300031544SoilVLAVAHVLGLLLAGFALSYVLPIGCSLLFADHLWSHFLLAAACAAAV
Ga0318561_1058153223300031679SoilVLAVAHVLGLLLASFALSYALPVGCALLYGDGLATRFLLAAVIAAAS
Ga0310686_10144913413300031708SoilMFGVAHVLGLLLAIFGVAYVLPVGCSIIVGDGLWPQF
Ga0307476_1001415513300031715Hardwood Forest SoilVVAVAHVLGLLLAFFGATYLLPIVCSILTSDGLALYFVVAAAS
Ga0307469_1234610013300031720Hardwood Forest SoilVLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLLAAAITAAV
Ga0307468_10065178823300031740Hardwood Forest SoilVLAVAHFLGLLLATFALAYALPVGCSVVMADGLWPKFLLSAALTAGCGVVLAG
Ga0306918_1014791813300031744SoilVLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLL
Ga0318494_1006136533300031751SoilVLAVAHVLGWLLAGFALSYALPIGCSLLFADGLWSHFLL
Ga0318494_1016049823300031751SoilVLAVAHVLGLLLAGFALSYVLPIGCSLLFADGLWSHFLLAAAC
Ga0318494_1078610613300031751SoilVLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFLLA
Ga0318494_1083892613300031751SoilVLAVAHVLGLLLASFALTYALPVGCALLYGDGLWTRFLLAAAITA
Ga0307477_1010331713300031753Hardwood Forest SoilVLAVAYVLGLLLAAFALSFALPIACSLLMEDGLWPKFLMAAALA
Ga0318554_1005030333300031765SoilVLAVAHVLGWLLAGFALSYALPIGCSLLFADGLWSHFL
Ga0318546_1075529813300031771SoilVLAVAHVLGLLLASFALTYALPIGCALLLRDGLTT
Ga0318543_1053617613300031777SoilVLAVAHVLGLVLAGFALTYALPFVCSLLFGDGLWSH
Ga0318498_1001016013300031778SoilVLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPH
Ga0318547_1010716413300031781SoilVLAVAHVLGLLLASFALTYALPVGCALLYGDGLWTRFLLAAAITAA
Ga0318552_1000121113300031782SoilVLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFLLAAACAAA
Ga0318548_1001226033300031793SoilVLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFL
Ga0318568_1005218813300031819SoilVLAVAHVLGLLLASFALSYALPVGCALLYGDGLATRF
Ga0318517_1040276623300031835SoilVLAVAHVLGWLLASFALSYLLPIGCALLLSDGLWTRFLLAAAVTAA
Ga0306925_1101945713300031890SoilVLAVAHVLGLVLAGFALTYALPFVCSLLFGDGLWSHFLL
Ga0306923_1077152313300031910SoilVLAVAHVLGLLLAGFALSYALPIGCSLLFADGLWS
Ga0306922_1090124323300032001SoilVLAVAHVLGWLLASFALSYLLPIGCALLLSDGLWTRFLLAAAVTA
Ga0318545_1015441913300032042SoilVLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFLLAAACAAAVG
Ga0318524_1070055613300032067SoilVLAVAHVLGLLLASFALTYALPVGCALLYGDGLWTRFLLAAAIT
Ga0318577_1019827713300032091SoilVLAVAHVLGLVLAGSALSYALPIACSLLFADGLWPHFLLAAACAAAVGMA
Ga0311301_1082770223300032160Peatlands SoilMLGVAHVLGLVLAIFGVAYVLPVGCSIIMGDGLWLQFIVAA
Ga0307471_10313654013300032180Hardwood Forest SoilVLAVAHVLGLLLATFGLACLLPVGCSLLLADGLWPRFLLA
Ga0335078_1082276113300032805SoilVLAVAHVLGLLLAAFAFSCVPALLCSLLLADGLAPRFLLAAAVTAGIGVAL
Ga0335078_1123132923300032805SoilVLAVAYALGLLLAAFALTFALPIACSLVMGDGLWPKFLLAAALAALAGLALS
Ga0335070_1132065813300032829SoilVLAVAHVLGWLLASFALSYLLPIAGSLLAGDGLASRFLLAAAVSAAV
Ga0335076_1040212213300032955SoilLFAVAYALGLLLAAFALTFVLPIACSLLMGDGLALRFLLAAALAGGGGLVLAAATARLKRELRA
Ga0335076_1050042413300032955SoilVIAVARVLGLLLAFFGAAYLLPIVCSLLTGDGITIFFLVGA
Ga0335073_1215447423300033134SoilVFAVAYMLGLLLLAFALSFVLPIACSLLMGDGLALKFLLAAALTAG
Ga0318519_1013676613300033290SoilVLAVAHVLGLLLASFALTYALPIGCALLLRDGLTTRFL
Ga0318519_1021056813300033290SoilVLAVAHVLGLLLATFALAYLAPALCSLLLGDHLWVNFLIAGAIT
Ga0314867_090936_1_1383300033808PeatlandVLAVAYALGLLLAAFALTFALPIACSLVMADGLWPKFLLAAALAAV


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