Metagenome / Metatranscriptome Family F090533

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090533
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	84 residues
Representative Sequence	MLIAVGVVVGVIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Number of Associated Samples	97
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	12.96 %
% of genes near scaffold ends (potentially truncated)	51.85 %
% of genes from short scaffolds (< 2000 bps)	77.78 %
Associated GOLD sequencing projects	95
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.222 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.296 % of family members)
Environment Ontology (ENVO)	Unclassified (25.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (43.519 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 38.94% β-sheet: 10.62% Coil/Unstructured: 50.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00909	Ammonium_transp	12.96
PF00589	Phage_integrase	5.56
PF00274	Glycolytic	2.78
PF02371	Transposase_20	1.85
PF00378	ECH_1	1.85
PF00934	PE	1.85
PF00884	Sulfatase	1.85
PF13495	Phage_int_SAM_4	1.85
PF16525	MHB	0.93
PF00581	Rhodanese	0.93
PF01734	Patatin	0.93
PF14494	DUF4436	0.93
PF04075	F420H2_quin_red	0.93
PF07143	CrtC	0.93
PF13397	RbpA	0.93
PF01040	UbiA	0.93
PF07110	EthD	0.93
PF10503	Esterase_PHB	0.93
PF01594	AI-2E_transport	0.93
PF00296	Bac_luciferase	0.93
PF13577	SnoaL_4	0.93
PF00543	P-II	0.93
PF02515	CoA_transf_3	0.93
PF00561	Abhydrolase_1	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0004	Ammonia channel protein AmtB	Inorganic ion transport and metabolism [P]	12.96
COG3588	Fructose-bisphosphate aldolase class 1	Carbohydrate transport and metabolism [G]	2.78
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.85
COG0347	Nitrogen regulatory protein PII	Signal transduction mechanisms [T]	0.93
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.93
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.93
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.93
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.93
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.93
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.22 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	95.37 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	94.44 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	89.81 %
Unclassified	root	N/A	2.78 %

Name	Rank	Taxonomy	Distribution
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	87.04 %
Unclassified	root	N/A	2.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %

Name	Rank	Taxonomy	Distribution
Mycobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	69.44 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	2.78 %
Unclassified	root	N/A	2.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %

Name	Rank	Taxonomy	Distribution
Mycobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	62.04 %
Mycolicibacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium	2.78 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	2.78 %
Unclassified	root	N/A	2.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %

Name	Rank	Taxonomy	Distribution
unclassified Mycobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium	50.00 %
Nocardia niigatensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia niigatensis	2.78 %
Unclassified	root	N/A	2.78 %
Mycolicibacterium moriokaense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	1.85 %
Mycolicibacterium smegmatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %

Name	Rank	Taxonomy	Distribution
Mycobacterium sp. 1554424.7	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	49.07 %
Nocardia niigatensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia niigatensis	2.78 %
Unclassified	root	N/A	2.78 %
Mycolicibacterium moriokaense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	1.85 %
Mycobacterium sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp.	0.93 %
Mycolicibacterium smegmatis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	0.93 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001131\|JGI12631J13338_1001596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	5543	Open in IMG/M
3300001471\|JGI12712J15308_10052666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1032	Open in IMG/M
3300001593\|JGI12635J15846_10646100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	612	Open in IMG/M
3300002245\|JGIcombinedJ26739_100202121	All Organisms → cellular organisms → Bacteria	1878	Open in IMG/M
3300002245\|JGIcombinedJ26739_100498466	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium smegmatis	1095	Open in IMG/M
3300005337\|Ga0070682_100247908	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1282	Open in IMG/M
3300005364\|Ga0070673_101921416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	561	Open in IMG/M
3300005406\|Ga0070703_10396743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	600	Open in IMG/M
3300005436\|Ga0070713_101191201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	737	Open in IMG/M
3300005457\|Ga0070662_100557582	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	961	Open in IMG/M
3300005539\|Ga0068853_101694174	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	613	Open in IMG/M
3300005548\|Ga0070665_101514402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	679	Open in IMG/M
3300005591\|Ga0070761_10380971	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	858	Open in IMG/M
3300005610\|Ga0070763_10522583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	681	Open in IMG/M
3300006237\|Ga0097621_100883201	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	832	Open in IMG/M
3300006881\|Ga0068865_100584798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	942	Open in IMG/M
3300006893\|Ga0073928_10335158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1125	Open in IMG/M
3300007076\|Ga0075435_101447362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia niigatensis	602	Open in IMG/M
3300009148\|Ga0105243_11653507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	668	Open in IMG/M
3300009174\|Ga0105241_10476976	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1108	Open in IMG/M
3300009553\|Ga0105249_11641274	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	715	Open in IMG/M
3300009665\|Ga0116135_1072414	Not Available	1218	Open in IMG/M
3300010339\|Ga0074046_10768138	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	564	Open in IMG/M
3300010397\|Ga0134124_12977204	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	517	Open in IMG/M
3300012089\|Ga0153924_1085340	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	630	Open in IMG/M
3300012177\|Ga0153943_1085377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	667	Open in IMG/M
3300012181\|Ga0153922_1018450	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	1598	Open in IMG/M
3300012951\|Ga0164300_10031238	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp.	1956	Open in IMG/M
3300012986\|Ga0164304_10596862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	823	Open in IMG/M
3300013306\|Ga0163162_10180697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2236	Open in IMG/M
3300013307\|Ga0157372_11185717	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	883	Open in IMG/M
3300014499\|Ga0182012_10114055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2004	Open in IMG/M
3300016319\|Ga0182033_10005915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6569	Open in IMG/M
3300016341\|Ga0182035_10205385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1561	Open in IMG/M
3300017792\|Ga0163161_10696906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	845	Open in IMG/M
3300017966\|Ga0187776_10763583	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia niigatensis	690	Open in IMG/M
3300017994\|Ga0187822_10286072	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	577	Open in IMG/M
3300017995\|Ga0187816_10092257	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1296	Open in IMG/M
3300018009\|Ga0187884_10292065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	660	Open in IMG/M
3300018064\|Ga0187773_10553162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	695	Open in IMG/M
3300018086\|Ga0187769_10090872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	2182	Open in IMG/M
3300018086\|Ga0187769_11340266	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia niigatensis	541	Open in IMG/M
3300020579\|Ga0210407_10672218	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	804	Open in IMG/M
3300020581\|Ga0210399_10936952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	701	Open in IMG/M
3300020582\|Ga0210395_10039838	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	3443	Open in IMG/M
3300021088\|Ga0210404_10014872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3248	Open in IMG/M
3300021170\|Ga0210400_10429249	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1090	Open in IMG/M
3300021181\|Ga0210388_10103741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	2437	Open in IMG/M
3300021401\|Ga0210393_11684269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	502	Open in IMG/M
3300021474\|Ga0210390_10457448	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1077	Open in IMG/M
3300021559\|Ga0210409_10099474	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2684	Open in IMG/M
3300022557\|Ga0212123_10498860	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	791	Open in IMG/M
3300022557\|Ga0212123_10848513	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	544	Open in IMG/M
3300025320\|Ga0209171_10421329	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	679	Open in IMG/M
3300025899\|Ga0207642_10663166	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	655	Open in IMG/M
3300025906\|Ga0207699_10458452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	915	Open in IMG/M
3300025916\|Ga0207663_10573342	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	884	Open in IMG/M
3300025933\|Ga0207706_10347562	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1290	Open in IMG/M
3300025939\|Ga0207665_10030250	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	3579	Open in IMG/M
3300025986\|Ga0207658_11655186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	585	Open in IMG/M
3300027376\|Ga0209004_1003759	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1974	Open in IMG/M
3300027376\|Ga0209004_1011345	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1326	Open in IMG/M
3300027439\|Ga0209332_1011731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1742	Open in IMG/M
3300027521\|Ga0209524_1001664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	3810	Open in IMG/M
3300027548\|Ga0209523_1053400	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	827	Open in IMG/M
3300027575\|Ga0209525_1078848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	789	Open in IMG/M
3300027651\|Ga0209217_1001216	All Organisms → cellular organisms → Bacteria → Terrabacteria group	8101	Open in IMG/M
3300027667\|Ga0209009_1015625	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	1819	Open in IMG/M
3300027767\|Ga0209655_10008586	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	3477	Open in IMG/M
3300027812\|Ga0209656_10052096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2306	Open in IMG/M
3300027812\|Ga0209656_10493817	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	536	Open in IMG/M
3300027829\|Ga0209773_10425608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	549	Open in IMG/M
3300027898\|Ga0209067_10717046	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	580	Open in IMG/M
3300028047\|Ga0209526_10006251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycolicibacterium → Mycolicibacterium moriokaense	8142	Open in IMG/M
3300028047\|Ga0209526_10907876	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	535	Open in IMG/M
3300028047\|Ga0209526_10937242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	523	Open in IMG/M
3300029945\|Ga0311330_10305063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1371	Open in IMG/M
3300029952\|Ga0311346_10879635	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	742	Open in IMG/M
3300030730\|Ga0307482_1229837	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	575	Open in IMG/M
3300031543\|Ga0318516_10021345	All Organisms → cellular organisms → Bacteria	3312	Open in IMG/M
3300031543\|Ga0318516_10041623	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	2473	Open in IMG/M
3300031718\|Ga0307474_10186055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1577	Open in IMG/M
3300031718\|Ga0307474_10990036	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	665	Open in IMG/M
3300031719\|Ga0306917_10704183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	793	Open in IMG/M
3300031748\|Ga0318492_10019335	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	2937	Open in IMG/M
3300031778\|Ga0318498_10016315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3086	Open in IMG/M
3300031782\|Ga0318552_10056829	Not Available	1865	Open in IMG/M
3300031788\|Ga0302319_10781949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	950	Open in IMG/M
3300031795\|Ga0318557_10000232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	12854	Open in IMG/M
3300031819\|Ga0318568_10297243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1002	Open in IMG/M
3300031823\|Ga0307478_11593716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	539	Open in IMG/M
3300031893\|Ga0318536_10172436	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1100	Open in IMG/M
3300031912\|Ga0306921_10974722	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	958	Open in IMG/M
3300031942\|Ga0310916_10102227	Not Available	2304	Open in IMG/M
3300031962\|Ga0307479_10982097	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	814	Open in IMG/M
3300032001\|Ga0306922_10617598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1147	Open in IMG/M
3300032008\|Ga0318562_10720859	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	573	Open in IMG/M
3300032052\|Ga0318506_10241611	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	799	Open in IMG/M
3300032055\|Ga0318575_10000272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium	11510	Open in IMG/M
3300032059\|Ga0318533_10893968	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	652	Open in IMG/M
3300032783\|Ga0335079_11907192	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	575	Open in IMG/M
3300032892\|Ga0335081_10191627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae	2844	Open in IMG/M
3300032892\|Ga0335081_10895190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1047	Open in IMG/M
3300032898\|Ga0335072_10063139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	4906	Open in IMG/M
3300032898\|Ga0335072_10795842	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	905	Open in IMG/M
3300032955\|Ga0335076_10375573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1306	Open in IMG/M
3300033158\|Ga0335077_10996116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	836	Open in IMG/M
3300034268\|Ga0372943_0235082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Mycobacteriaceae → Mycobacterium → unclassified Mycobacterium → Mycobacterium sp. 1554424.7	1147	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	82.41%
Host-Associated	Host-Associated	17.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.37%
Plants	Host-Associated → Plants	14.81%
Aquatic	Environmental → Aquatic	12.04%
Fungi	Host-Associated → Fungi	2.78%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	67.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.26%
Freshwater	Environmental → Aquatic → Freshwater	7.41%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.63%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.70%
Peat	Environmental → Terrestrial → Peat	2.78%
Mycelium	Host-Associated → Fungi → Mycelium	2.78%
Sediment	Environmental → Aquatic → Sediment	0.93%
Roots	Host-Associated → Plants → Roots	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	33.33%
Loam	Environmental → Terrestrial → Soil → Loam	22.22%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	12.04%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	7.41%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.63%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.63%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.70%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.78%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.93%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.93%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	30.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	16.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	11.11%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.56%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.63%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.63%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.63%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.70%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	2.78%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.78%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	2.78%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.85%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.93%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.93%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.93%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.30%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	14.81%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	6.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.63%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.63%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.70%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.70%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.70%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	2.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.78%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	2.78%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	1.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.85%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.93%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.93%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.93%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.93%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.93%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.93%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.93%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001131	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1	Environmental	Open in IMG/M
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005364	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG	Host-Associated	Open in IMG/M
3300005406	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009665	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_10	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300012089	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ008 MetaG	Host-Associated	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300012181	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ006 MetaG	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014499	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2S metaG	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018009	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_40	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025320	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG (SPAdes)	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025986	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027376	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027439	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M1 (SPAdes)	Environmental	Open in IMG/M
3300027521	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027575	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029945	I_Bog_N2 coassembly	Environmental	Open in IMG/M
3300029952	II_Bog_N3 coassembly	Environmental	Open in IMG/M
3300030730	Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300034268	Forest soil microbial communities from Eldorado National Forest, California, USA - SNFC_MG_FRD_1.2	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12631J13338_10015961	3300001131	Forest Soil	IAAGAAAWVMTGQSSTYDQSGDGCVNVTSASTMGGGLEHACGAAAHDWCRAAYDKHDAHAEAVQAQCRVAGILP*
JGI12712J15308_100526661	3300001471	Forest Soil	FAAGAIAWAIIGHPSAHDTSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP*
JGI12635J15846_106461001	3300001593	Forest Soil	VIAVGATVWVMAGRSSTADRSGETCVTVTMASSMGGAVEHACGAAARDWCRAAYAQHDTHAQAVQVQCRVAGILPTAPTPAI*
JGIcombinedJ26739_1002021213	3300002245	Forest Soil	MLIVIGVVVGVFAAGAIAWAIIGHPSAHDTSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP*
JGIcombinedJ26739_1004984661	3300002245	Forest Soil	LIVIGVVVGVFAAGAIAWAIIGHPSAHDRSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP*
Ga0070682_1002479081	3300005337	Corn Rhizosphere	MLTVIAAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0070673_1019214161	3300005364	Switchgrass Rhizosphere	AGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0070703_103967432	3300005406	Corn, Switchgrass And Miscanthus Rhizosphere	MLTVIGAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0070713_1011912013	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MLIAVGIFVGVIAAGSTAWVMTEHSSAYDRSGNGCVNVTIASSMGGSLEHACGAAAHDWCRAVYAQHDAHAEAVQAQCRVAGIPP
Ga0070662_1005575822	3300005457	Corn Rhizosphere	MLTVIGAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAAAVQTQCRVAGILP*
Ga0068853_1016941742	3300005539	Corn Rhizosphere	MWVVAGILVVVIAVGATIWAMVGNSWSSVRSGQSCVTVSLASSMGAGVEHACGAAARDWCRAAYVQRDAHAEAVQAQCRVAGLLPRTTTPAD*
Ga0070665_1015144021	3300005548	Switchgrass Rhizosphere	ERRAMWVVAGILVVVIAVGATIWAMVGNSWSSVRSGQSCVTVSLASSMGAGVEHACGAAARDWCRAAYVQRDAHAEAVQAQCRVAGLLPRTTTPAD*
Ga0070761_103809712	3300005591	Soil	AALIVIGVVFCVVLAGALAWGLTGHSSTYDRSGGGCVTVTFPSSMGGGLEHACGVAARDWCRAVDGRRDAHAVAVQAQCRVREFARKRLGGIGSQSEIQN*
Ga0070763_105225832	3300005610	Soil	MLIAVGVVVGVIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP*
Ga0097621_1008832011	3300006237	Miscanthus Rhizosphere	RTKELHTANRGKTPRTDPLTPGERRAMLTVIGAVVGAIAACSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0068865_1005847982	3300006881	Miscanthus Rhizosphere	AAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0073928_103351581	3300006893	Iron-Sulfur Acid Spring	MLIVIGVVVGVFAAGAIAWAIIGHPSAHDRSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP*
Ga0075435_1014473621	3300007076	Populus Rhizosphere	MLIGIGVIAVGIAAGATAWTMTTHSSTYDRSGDGCVNVTIASSMGGGLEHACGAPARGWCSAVNVRHDAHAEAVQAQCRVAGILP*
Ga0105243_116535071	3300009148	Miscanthus Rhizosphere	TDPLTPGERRAMLTVIAAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0105241_104769763	3300009174	Corn Rhizosphere	RTKELHTANRGKTPRTDPLTPGERRAMLTVIAAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0105249_116412742	3300009553	Switchgrass Rhizosphere	GAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0116135_10724141	3300009665	Peatland	AGAAAWVMTGQSSTYDQSGDGCVNVTSASTMGGGLEHACGAAARDWCRAAYDKHDAHAEAVQAQCRVAGILP*
Ga0074046_107681381	3300010339	Bog Forest Soil	MLIAVGVVVGVIAAGSTAWVMTSHSSTYDRSGNGCVNVTIASSMGGALEHACGTVARDWCRAVYAQHDAHAEAVQAQCRVAGILP*
Ga0134124_129772042	3300010397	Terrestrial Soil	AIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0153924_10853402	3300012089	Attine Ant Fungus Gardens	MLIAIGLFLGVIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAAYAQHDAHAEAVQAQCRVAGILP*
Ga0153943_10853771	3300012177	Attine Ant Fungus Gardens	MLIAVGVVVGVIAVGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAQHNAHAEAVQAQCRIAGILP*
Ga0153922_10184503	3300012181	Attine Ant Fungus Gardens	MLIAIGVFLGVIAAGSTAWVMTDHGSTYDRSGDGCVNVTFASSMGGANQHACGTAARDWCRAVYAQHNAHAEAVQ
Ga0164300_100312381	3300012951	Soil	AATVWEATDQSSSAVRSGQICVTVTMASSMGGGVEHACDAAARDWCRAADVQHDAHAEAVQAQCRVAGILPQTTTPVT*
Ga0164304_105968621	3300012986	Soil	VIAVGAKIWAMVGNSWSSVRSGQSCVTVSLASSMGAGVEHACGAAARDWCRAAYVQRDAHAEAVQAQCRVAGLLPRTTTPAD*
Ga0163162_101806973	3300013306	Switchgrass Rhizosphere	MLTVIGAVVGAIAACSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0157372_111857171	3300013307	Corn Rhizosphere	GSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP*
Ga0182012_101140553	3300014499	Bog	MLIAVGVVVGVVAAGSTAWLMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAVQANCRVAGILP*
Ga0182033_100059159	3300016319	Soil	MRIAIGVFVGVIAAGSTAWVITDHSPDPYDRSGDGCVNVAFASSTGGALEHACGTAARDLCRAVYAQHNAHAEAVQAQCRVAGILP
Ga0182035_102053851	3300016341	Soil	MLIAVGVVVGVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAQHNAHAE
Ga0163161_106969062	3300017792	Switchgrass Rhizosphere	MLTVIGAVVGAIAACSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP
Ga0187776_107635831	3300017966	Tropical Peatland	ERRAMLIAAAVFVALIAAGVVTWTLTGHSSGYGRSGDSCVNVTIASSMGSAVEHACGAEAHDWCRAVSAQHDAHSKAVQAQCRIAGILP
Ga0187822_102860721	3300017994	Freshwater Sediment	MLIAIGVFLGVIAAGSTAWVMTDHSSDPYDRSGDGCVNVTFASSTGGALQHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0187816_100922573	3300017995	Freshwater Sediment	MLIAVGVVVGVIAAGSTAWVMTGHSSTYDRSGDGCVNVRFASSTGGALQHACGTAARDWCRAVYTQHGAHAEAVQAQCRVAGILP
Ga0187884_102920651	3300018009	Peatland	MLIVIGVVAGVIAAGAAAWVMTGQSSTYDQSGDGCVNVTSASTMGGGLEHACGAAAHDWCRAAYDKHDAHAEAVQAQCRVAGILP
Ga0187773_105531622	3300018064	Tropical Peatland	VIAVVVGVVAAGVLAWVLTGHSSTYDRSGDGCVTISFPSTMGGGLEHACGAAAHDWCRAADARHDAHAAAVRAQCRVAGIRP
Ga0187769_100908723	3300018086	Tropical Peatland	MRIAIGVFVGVIAAFSTAWVMTDHSSDPYDRSGDGCVNVHFASSMGGALQHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0187769_113402661	3300018086	Tropical Peatland	IAAGVAVWEMMDHSSGYGRSGESCMNVTIASSMGGAVEHACGAEARDWCHAVYAQHDAHSEAVHAQCRIARILPQGTTPAI
Ga0210407_106722182	3300020579	Soil	MLTVIAAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP
Ga0210399_109369522	3300020581	Soil	MLTVIGAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP
Ga0210395_100398381	3300020582	Soil	MLIAVGVVVGVIAVGSTAWVMTDHSSTYDRSGNGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0210404_100148722	3300021088	Soil	MLIAVGVVVGVIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0210400_104292492	3300021170	Soil	MLIVIGVVVAVVVAGAIAWAIIGHSSAHDRSGDGCVDVAIASSMGGAVEHTCGAAARDWCRAVSARHDTHAESAQAQCRVAGILP
Ga0210388_101037414	3300021181	Soil	MLIAVGVVVGVIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAV
Ga0210393_116842691	3300021401	Soil	VTGAFVGVVAAGALAWALAGHSSAYDRSGDGCVTVTFPSTMGGGLEHACGAAAQDWCRAADARHDAHATAVQTQCRVARILP
Ga0210390_104574482	3300021474	Soil	VTGVIAALVLACALAWWLTGNSSTYDRSGDGCVTVTFPSSMGGGLEHACGVAAHDWCRAVDGQRDAHAVAVQAQCRVAGIRP
Ga0210409_100994743	3300021559	Soil	MLTVIGVVVGVVAAGAIAWAIIGQSSAHDRSGDGCVDVAIASSMGGGVEHTCGAAARDWCRAVYARHDTHAEAVQTQCRVAGILP
Ga0212123_104988601	3300022557	Iron-Sulfur Acid Spring	GAIAWAIIGHPSAHDRSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP
Ga0212123_108485131	3300022557	Iron-Sulfur Acid Spring	MLIATGVVAAVIAAGAAAWGLTSHSSSYDRSGDGCVNVTIASSMGGGVEHACGGEAHDWCRAVYAQHDAHAEAVQAQCRI
Ga0209171_104213293	3300025320	Iron-Sulfur Acid Spring	VLLIAVGVIAALIAAGALAWVMTDHSSAYDRSGQGCVNVSEASSMGGALEHACGSAARDWCRAVYVQHDAHAEAVQAQCRTAGILP
Ga0207642_106631662	3300025899	Miscanthus Rhizosphere	MWVVAGILVVVIAVGATIWAMVGNSWSSVRSGQSCVTVSLASSMGAGVEHACGAAARDWCRAAYVQRDAHAEAVQAQCRVA
Ga0207699_104584521	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MLTVIAAVVGAIAAGSIAWALTDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP
Ga0207663_105733422	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MLTVIAAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGI
Ga0207706_103475623	3300025933	Corn Rhizosphere	MLTVIGAVVGAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAAAVQTQCRVAGILP
Ga0207665_100302501	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MWVVAGILVVVIAVGATIWAMVGNSWSSVRSGQSCVTVSLASSMGAGVEHACGAAARDWCRAAYVQRDAHAEAVQAQCRVAGLLPRTTTPAD
Ga0207658_116551862	3300025986	Switchgrass Rhizosphere	MLTVIGAVVVAIAAGSIAWAITDHSSTYDRSGDGCVNVTSASTMGGGLEHACGKAALDWCRAAYARHDTHAEAVQTQCRVAGILP
Ga0209004_10037592	3300027376	Forest Soil	MFIAVGVVVATIAAGAAVWAATEHSSTYDRSRDGCVNVTIASSMGGGIEHACGTAAQDWCRAVSTRHDTHAEAVQTECRKAGVLP
Ga0209004_10113452	3300027376	Forest Soil	MLIAIGVFLGVIAAGSTAWVMTDHGSTYDRSGDSCVNVTFASSMGGANQHACGTAARDWCRAVYAQHNAHAEAVQAQCRVAGILP
Ga0209332_10117313	3300027439	Forest Soil	MLIVIGVVVGVFAAGAIAWAIIGHPSAHDRSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP
Ga0209524_10016645	3300027521	Forest Soil	MLIVIGVVVGVFAAGAIAWAIIGHPSAHDTSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP
Ga0209523_10534002	3300027548	Forest Soil	MLIAIGVFLGVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSTGGALQHACGTAARDWCRAVYAQHNAHAEAVQAQCRVAGILP
Ga0209525_10788481	3300027575	Forest Soil	GERRAMLIAALIFVALIAVGVAAWAMTGHSSGYGRSGDRCVNVTIASSMGSAVEHACGAEARDWCRAVSAQRDAHSKAVQAQCRIAGILP
Ga0209217_10012168	3300027651	Forest Soil	MLMVIGVVVGVVAAGAIAWAIIGHSSAHDRSGDGCVDVAIASSMGGGVEHTCGAAARDWCRAVYTRHDTHAEAVQAQCRVAGILP
Ga0209009_10156253	3300027667	Forest Soil	GVFAAGAIAWAIIGHPSAHDRSGDGCVDVAIASSMGGSVEHKCGAAARDWCRAVYARNDTHAEAVQAQCRVAGIVP
Ga0209655_100085863	3300027767	Bog Forest Soil	MLIVIAVVAGVIAAGAAAWVLTGQSSTYDQSGDGCVNVTSASTMGGGLEHACGAAARDWCRAAYDKHDAHAEAVQAQCRVAGILP
Ga0209656_100520961	3300027812	Bog Forest Soil	MLIAVGVVVGVIAAGSTAWVMTSHSSTYDRSGNGCVNVTIASSMGGALEHACGTVARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0209656_104938172	3300027812	Bog Forest Soil	PLTSGERRAALIVIGVVCCVVLAGALAWGLTGHSSTYDRSGGGCVTVTFPSSMGGGLEHACGMAAHDWCRAVDGQRDAHALAVQAQCRVAGIRP
Ga0209773_104256081	3300027829	Bog Forest Soil	PTDPLTPGERRAMLIVVGVVVGVIAAGSTVWVMTSHSSSYDRSGDGCVNVTIASSMGGAFEHACGTAARDWCRAVYAQHDAHAEAVQAQCRGAGILP
Ga0209067_107170461	3300027898	Watersheds	AVGVVVGVIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAIQAQCRVAGILP
Ga0209526_100062511	3300028047	Forest Soil	MLIVIGVVVGVVAAGAIAWAIIGHSSAHDRSGDGCVDVAIASSMGGGVEHTCGAAARDWCRAVYARHDTHAEAVQAQCRVAGILP
Ga0209526_109078761	3300028047	Forest Soil	FVAVIAVGATIWAIAGRSSTGDRSGETCVTVTMASSMGGGVEHACGAAARDWCRAAYAQHDTHAQAVQVQCRVAGILPTATTPAI
Ga0209526_109372422	3300028047	Forest Soil	TNPLTPGERRAMLIATLVFVALIAVGVAAWAMTGHSSGYGRSGDRCVNVTIASSMGGAVEHACGTEARDWCRAVSAQHDAHAEAVQAQCRIAGILP
Ga0311330_103050632	3300029945	Bog	MLIAVGVVVGVIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGAAARDWCRAVYAQHDAHAAAVQA
Ga0311346_108796352	3300029952	Bog	KTPPTDPLTPGERRAMLIAVGVVVGVIAAGSTAWVMTGHKSTYDRSGDGCVNVTIASSMGGALEHACGAAARDWCRAVYAQHDAHAEAVQANCRVAGILP
Ga0307482_12298371	3300030730	Hardwood Forest Soil	MLIAIGVFVGVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAQHNAHAEAVQAQCRVAGILP
Ga0318516_100213455	3300031543	Soil	MLIAVGVVVGVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAEHNAHAEAVQAQCRVAGILP
Ga0318516_100416233	3300031543	Soil	MRIAIGVFVGVIAAGSTAWVITDHSPDPYDRSGDGCVNVAFASSTGGALEHACGTAARDLCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0307474_101860552	3300031718	Hardwood Forest Soil	MLIAIGLFLGVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAQHNAHAEAVQAQCRVAGILP
Ga0307474_109900361	3300031718	Hardwood Forest Soil	ERRAALIVIGVVFCVVLAGALAWGLTGHSSTYDRSGGGCVTVTFPSSMGGGLEHACGVAAHDWCRAVDGQRDAHALAVQAQCRVAGIRP
Ga0306917_107041832	3300031719	Soil	ERRAMLIAVGVVVGVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAEHNAHAEAVQAQCRVAGILP
Ga0318492_100193357	3300031748	Soil	MRIAIGVFVGVIAAGSTAWVITDHSSDPYDRSGDGCVNVAFASSTGGALEHACGTAARDLCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0318498_100163157	3300031778	Soil	MRIAIGVFVGVIAAGSTAWVITDHSPDPYDRSGDGCVNVAFASSRDLCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0318552_100568291	3300031782	Soil	GSTAWVITDHSSDPYDRSGDGCVNVTFASSTGGALEHACGTAARDLCRAVYAQHNAHAEAVQAQCRVAGILP
Ga0302319_107819491	3300031788	Bog	GSTAWVMTGHKSTYDRSGDGCVNVTIASSMGGALEHACGAAARDWCRAVYAQHDAHAEAVQANCRVAGILP
Ga0318557_100002324	3300031795	Soil	MRIAIGVFVGVITAGSTAWVITDHSPDPYDRSGDGCVNVAFASSTGGALEHACGTAARDLCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0318568_102972431	3300031819	Soil	GVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAEHNAHAEAVQAQCRVAGILP
Ga0307478_115937162	3300031823	Hardwood Forest Soil	AAGALTWALTGHSSTFDRSGDGCVTVTFPSAMGGGLEHACGAPAQNWCRAADTQHDAHAVVVQAQCRVAGILR
Ga0318536_101724361	3300031893	Soil	PPTDPLTPRERRRVFIAVGVVAAVIAAAAAVWALTEHSSPYDRSRDGCVNVTIASSMGGGIEHACGTAAQDWCRAVATRHDTHAEAVQTECRKAGILP
Ga0306921_109747222	3300031912	Soil	VFIAVGVVAAVIAAAAAVWALTEHSSPYDRSRDGCVNVTIASSMGGGIEHACGTAAQDWCRAVATRHDTHAEAVQTECRKAGILP
Ga0310916_101022273	3300031942	Soil	AGSTAWVITDHSPDPYDRSGDGCVNVAFASSTGGALEHACGTAARDLCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0307479_109820972	3300031962	Hardwood Forest Soil	MLIAIGVFLGVIAAGSTAWVMTDHGSTYDRSGDGCVNVTFASSMGGANQHACGTAARDWCRAVYAQHNAHAEAVQAQCRVAGILP
Ga0306922_106175982	3300032001	Soil	VGVVAAVIAAAAAVWALTEHSSPYDRSRDGCVNVTIASSMGGGIEHACGTAAQDWCRAVATRHDTHAEAVQTECRKAGI
Ga0318562_107208591	3300032008	Soil	VGVIAAGSTAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAEHNAHAEAVQAQCRVAGILP
Ga0318506_102416112	3300032052	Soil	LTPGERRAMLIAVGVVVGVIAAGSTAWAMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAEHNAHAEAVQAQCRVAGILP
Ga0318575_100002722	3300032055	Soil	MRIAIGVFVGVIAAGSTAWVITDHSSDPYDRSGDGCVNVTFASSTGGALEHACGTAARDLCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0318533_108939682	3300032059	Soil	LTPRERRRVFIAVGVVAAVIAAAAAVWALTEHSSPYDRSRDGCVNVTIASSMGGGIEHACGTAAQDWCRAVATRHDTHAEAVQTECRKAGILP
Ga0335079_119071922	3300032783	Soil	TPPTDPPTPGQRRAMLIAIGVFVGVIAAGSIAWVMTDHSSPYERSGDGCVNVMFASSMGGALQHACGTAARDWCRAIYAQHSAHAEAVQAQCRVAGILP
Ga0335081_101916274	3300032892	Soil	MLIAIGVFVGVIAAGSIAWVMTDHSSPYERSGDGCVNVMFASSMGGALQHACGTAARDWCRAVYAQHSAHAEAVQAQCRVAGILP
Ga0335081_108951901	3300032892	Soil	PLTPGERRAMLIAVGVVVGVIAAGSTAWVMTDHSSTYDQSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0335072_100631393	3300032898	Soil	MLIAIGVVVGVIAAGSIAWVMTDHSSTYDRSGDGCVNVTFASSMGGALQHACGTAARDWCRAVYAQHDAHAEAVQAQCRVAGILP
Ga0335072_107958422	3300032898	Soil	MLIAVGVVVGGIAAGSTAWVMTGHSSTYDRSGDGCVNVTIASSMGGALEHACGTAARDWCRAVHAQHDAHAEAVQAQ
Ga0335076_103755732	3300032955	Soil	MLIAVGVVVGVIAAGSTAWVMTDHSSTYDQSGDGCVNVTIASSMGGALEHACGTAARDWCRAVYAQHGAHAEAVQAQCRVAGILP
Ga0335077_109961162	3300033158	Soil	MLIAIGVFVGVIAAGSIAWVMTDHSSPYERSGDGCVNVMFASSMGGALQHACGTAARDWCRAIYAQHSAHAEAVQAQCRVAGILP
Ga0372943_0235082_512_772	3300034268	Soil	MLRAIGVFVGVIAAGSTAWVITDHSSDPYDRSGDGCVNVTFASSTGGAIQHACGTAAHDWCRGVYAQHDAHAEAVQAQCRVAGILP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090533

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences