Metagenome / Metatranscriptome Family F090359

Basic Information
Family ID	F090359
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	63 residues
Representative Sequence	VPALEDRPIPIGAIVTVQYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRKDP
Number of Associated Samples	96
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	37.96 %
% of genes near scaffold ends (potentially truncated)	39.81 %
% of genes from short scaffolds (< 2000 bps)	87.96 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Most Common Taxonomy
Group	Unclassified (52.778 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (15.741 % of family members)
Environment Ontology (ENVO)	Unclassified (42.593 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (52.778 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 50.00% Coil/Unstructured: 50.00%
Feature Viewer

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Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00486	Trans_reg_C	15.74
PF00072	Response_reg	14.81
PF00892	EamA	14.81
PF05995	CDO_I	8.33
PF07077	DUF1345	6.48
PF03466	LysR_substrate	3.70
PF01041	DegT_DnrJ_EryC1	1.85
PF00126	HTH_1	1.85
PF00672	HAMP	0.93
PF03706	LPG_synthase_TM	0.93
PF01370	Epimerase	0.93
PF11139	SfLAP	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG5553	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	General function prediction only [R]	8.33
COG4291	Uncharacterized membrane protein	Function unknown [S]	6.48
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	1.85
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	1.85
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	1.85
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	1.85
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	1.85
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	1.85
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.93

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
All Organisms	root	All Organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
cellular organisms	root	All Organisms → cellular organisms	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	45.37 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	23.15 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	2.78 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	1.85 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.85 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.93 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.78 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.78 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1.85 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.93 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2124908045\|KansclcFeb2_ConsensusfromContig1195509	Not Available	575	Open in IMG/M
3300000033\|ICChiseqgaiiDRAFT_c0607443	Not Available	845	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_101712337	All Organisms → cellular organisms → Bacteria	617	Open in IMG/M
3300004800\|Ga0058861_11577908	Not Available	723	Open in IMG/M
3300004803\|Ga0058862_12274083	Not Available	786	Open in IMG/M
3300005327\|Ga0070658_10865979	Not Available	785	Open in IMG/M
3300005328\|Ga0070676_10334823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1036	Open in IMG/M
3300005330\|Ga0070690_100273723	Not Available	1202	Open in IMG/M
3300005335\|Ga0070666_10175593	Not Available	1502	Open in IMG/M
3300005335\|Ga0070666_10977148	Not Available	628	Open in IMG/M
3300005339\|Ga0070660_100973264	Not Available	717	Open in IMG/M
3300005343\|Ga0070687_100083110	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1753	Open in IMG/M
3300005347\|Ga0070668_100166666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	1791	Open in IMG/M
3300005437\|Ga0070710_10067798	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2048	Open in IMG/M
3300005438\|Ga0070701_10027707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2779	Open in IMG/M
3300005457\|Ga0070662_100022596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4309	Open in IMG/M
3300005530\|Ga0070679_100120296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2611	Open in IMG/M
3300005543\|Ga0070672_100325092	Not Available	1308	Open in IMG/M
3300005549\|Ga0070704_100230915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1509	Open in IMG/M
3300005564\|Ga0070664_100372731	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	1302	Open in IMG/M
3300005577\|Ga0068857_100261095	Not Available	1589	Open in IMG/M
3300005614\|Ga0068856_101724403	Not Available	638	Open in IMG/M
3300005841\|Ga0068863_100082561	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3046	Open in IMG/M
3300006573\|Ga0074055_11125846	Not Available	772	Open in IMG/M
3300006575\|Ga0074053_11214330	Not Available	1249	Open in IMG/M
3300006605\|Ga0074057_11971611	Not Available	850	Open in IMG/M
3300006755\|Ga0079222_10643468	Not Available	822	Open in IMG/M
3300006806\|Ga0079220_10009970	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3647	Open in IMG/M
3300006806\|Ga0079220_10119447	Not Available	1402	Open in IMG/M
3300006854\|Ga0075425_101277876	Not Available	832	Open in IMG/M
3300006871\|Ga0075434_100507643	Not Available	1226	Open in IMG/M
3300006954\|Ga0079219_11737521	Not Available	580	Open in IMG/M
3300009011\|Ga0105251_10073020	Not Available	1594	Open in IMG/M
3300009156\|Ga0111538_10045647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5628	Open in IMG/M
3300009177\|Ga0105248_10549272	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1303	Open in IMG/M
3300009177\|Ga0105248_11003999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	943	Open in IMG/M
3300010371\|Ga0134125_10086914	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3478	Open in IMG/M
3300010373\|Ga0134128_10322044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1729	Open in IMG/M
3300010373\|Ga0134128_12111754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	620	Open in IMG/M
3300010375\|Ga0105239_13366760	Not Available	520	Open in IMG/M
3300010397\|Ga0134124_10012915	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6760	Open in IMG/M
3300010399\|Ga0134127_13146821	Not Available	539	Open in IMG/M
3300011120\|Ga0150983_14980573	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	652	Open in IMG/M
3300012951\|Ga0164300_10057647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1561	Open in IMG/M
3300012951\|Ga0164300_10795456	Not Available	585	Open in IMG/M
3300012955\|Ga0164298_11516929	Not Available	524	Open in IMG/M
3300012957\|Ga0164303_11340679	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	532	Open in IMG/M
3300012958\|Ga0164299_10087004	Not Available	1586	Open in IMG/M
3300012958\|Ga0164299_10734426	Not Available	695	Open in IMG/M
3300012960\|Ga0164301_10478451	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	893	Open in IMG/M
3300012961\|Ga0164302_10174262	Not Available	1294	Open in IMG/M
3300012961\|Ga0164302_10207312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1211	Open in IMG/M
3300012984\|Ga0164309_10642253	Not Available	834	Open in IMG/M
3300012986\|Ga0164304_10043104	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2407	Open in IMG/M
3300012986\|Ga0164304_11572323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	547	Open in IMG/M
3300012987\|Ga0164307_11011146	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	677	Open in IMG/M
3300012988\|Ga0164306_10106221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1841	Open in IMG/M
3300012988\|Ga0164306_11795654	Not Available	533	Open in IMG/M
3300013102\|Ga0157371_10430309	Not Available	968	Open in IMG/M
3300013104\|Ga0157370_10165620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2055	Open in IMG/M
3300013296\|Ga0157374_10499524	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1221	Open in IMG/M
3300013297\|Ga0157378_11754941	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300013306\|Ga0163162_13150916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	529	Open in IMG/M
3300013308\|Ga0157375_10378774	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1581	Open in IMG/M
3300013308\|Ga0157375_11170595	Not Available	901	Open in IMG/M
3300013308\|Ga0157375_13436935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	527	Open in IMG/M
3300013308\|Ga0157375_13778225	Not Available	503	Open in IMG/M
3300015371\|Ga0132258_11803366	Not Available	1542	Open in IMG/M
3300015374\|Ga0132255_105677225	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300020070\|Ga0206356_11746687	Not Available	1280	Open in IMG/M
3300020082\|Ga0206353_11991974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1524	Open in IMG/M
3300021478\|Ga0210402_11081795	Not Available	729	Open in IMG/M
3300025899\|Ga0207642_10212230	Not Available	1076	Open in IMG/M
3300025904\|Ga0207647_10197067	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1166	Open in IMG/M
3300025911\|Ga0207654_10450213	Not Available	903	Open in IMG/M
3300025918\|Ga0207662_10587422	Not Available	774	Open in IMG/M
3300025920\|Ga0207649_10685900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	794	Open in IMG/M
3300025923\|Ga0207681_10302370	Not Available	1266	Open in IMG/M
3300025926\|Ga0207659_11120047	Not Available	677	Open in IMG/M
3300025928\|Ga0207700_11208334	Not Available	675	Open in IMG/M
3300025940\|Ga0207691_10878856	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	751	Open in IMG/M
3300025942\|Ga0207689_11572879	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	548	Open in IMG/M
3300025961\|Ga0207712_10292956	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1333	Open in IMG/M
3300025981\|Ga0207640_10146871	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	1727	Open in IMG/M
3300026075\|Ga0207708_10200756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1591	Open in IMG/M
3300026078\|Ga0207702_10306657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1508	Open in IMG/M
3300026089\|Ga0207648_10384144	Not Available	1270	Open in IMG/M
3300026116\|Ga0207674_10182581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2049	Open in IMG/M
3300027787\|Ga0209074_10340787	Not Available	612	Open in IMG/M
3300028379\|Ga0268266_11438750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	665	Open in IMG/M
3300028709\|Ga0307279_10119413	Not Available	507	Open in IMG/M
3300028811\|Ga0307292_10372964	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	604	Open in IMG/M
3300029636\|Ga0222749_10650662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300031781\|Ga0318547_10728341	Not Available	617	Open in IMG/M
3300031820\|Ga0307473_10006933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3813	Open in IMG/M
3300031831\|Ga0318564_10188216	Not Available	920	Open in IMG/M
3300031847\|Ga0310907_10171309	Not Available	1015	Open in IMG/M
3300031854\|Ga0310904_10873562	Not Available	634	Open in IMG/M
3300031858\|Ga0310892_10128671	Not Available	1435	Open in IMG/M
3300031890\|Ga0306925_11196618	Not Available	762	Open in IMG/M
3300031910\|Ga0306923_11091005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	861	Open in IMG/M
3300031954\|Ga0306926_12929706	Not Available	512	Open in IMG/M
3300032010\|Ga0318569_10157578	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1047	Open in IMG/M
3300032012\|Ga0310902_10839286	Not Available	629	Open in IMG/M
3300032013\|Ga0310906_10353895	Not Available	956	Open in IMG/M
3300032066\|Ga0318514_10745132	Not Available	521	Open in IMG/M
3300032205\|Ga0307472_100468376	Not Available	1076	Open in IMG/M
3300033290\|Ga0318519_10735115	Not Available	605	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	57.41%
Host-Associated	Host-Associated	42.59%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	57.41%
Plants	Host-Associated → Plants	40.74%
Human	Host-Associated → Human	1.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	57.41%
Rhizosphere	Host-Associated → Plants → Rhizosphere	28.70%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.04%
Digestive System	Host-Associated → Human → Digestive System	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	48.15%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.74%
Soil	Host-Associated → Plants → Rhizosphere → Soil	12.96%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.19%
Loam	Environmental → Terrestrial → Soil → Loam	9.26%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.74%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	12.96%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.11%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.19%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.63%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	4.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.78%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	15.74%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.48%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	5.56%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	5.56%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.63%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.63%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	4.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	4.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.63%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	3.70%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	3.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.78%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.78%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.78%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.78%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.78%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.85%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	1.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	1.85%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.93%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2124908045	Soil microbial communities from Great Prairies - Kansas assembly 1 01_01_2011	Environmental	Open in IMG/M
3300000033	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005343	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005438	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006573	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006575	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAA (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006605	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009011	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300020070	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020082	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025904	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025918	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025942	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026089	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026116	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028709	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_118	Environmental	Open in IMG/M
3300028811	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_149	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
KansclcFeb2_07328300	2124908045	Soil	VPALEDRPIPIGAIVTVQYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRKDP
ICChiseqgaiiDRAFT_06074431	3300000033	Soil	VPALEDRPIPIGAIVTVQYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRKDP*
INPhiseqgaiiFebDRAFT_1017123371	3300000364	Soil	VPALEDRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIILLPWTAIRRKDQ*
Ga0058861_115779082	3300004800	Host-Associated	DDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL
Ga0058862_122740832	3300004803	Host-Associated	PIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0070658_108659792	3300005327	Corn Rhizosphere	PALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0070676_103348233	3300005328	Miscanthus Rhizosphere	DRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0070690_1002737231	3300005330	Switchgrass Rhizosphere	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0070666_101755931	3300005335	Switchgrass Rhizosphere	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKDP*
Ga0070666_109771481	3300005335	Switchgrass Rhizosphere	VLAVPALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0070660_1009732641	3300005339	Corn Rhizosphere	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0070687_1000831102	3300005343	Switchgrass Rhizosphere	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0070668_1001666661	3300005347	Switchgrass Rhizosphere	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRNAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0070710_100677982	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	VLAVPALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0070701_100277072	3300005438	Corn, Switchgrass And Miscanthus Rhizosphere	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0070662_1000225961	3300005457	Corn Rhizosphere	DRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0070679_1001202961	3300005530	Corn Rhizosphere	HHRPNSVYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0070672_1003250922	3300005543	Miscanthus Rhizosphere	VPAIEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0070704_1002309151	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	VVPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0070664_1003727313	3300005564	Corn Rhizosphere	DDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0068857_1002610951	3300005577	Corn Rhizosphere	PPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0068856_1017244031	3300005614	Corn Rhizosphere	VFAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0068863_1000825613	3300005841	Switchgrass Rhizosphere	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAVRRKDP*
Ga0074055_111258462	3300006573	Soil	VPALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIILLPWTAIRRKD
Ga0074053_112143301	3300006575	Soil	VPALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIILLPWTAIRRKDH*
Ga0074057_119716112	3300006605	Soil	VPALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRVAAYVRIPISESRHRIIVLPWTAIRRKDP*
Ga0079222_106434682	3300006755	Agricultural Soil	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHHTIVVPWSTIR
Ga0079220_100099703	3300006806	Agricultural Soil	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKGP*
Ga0079220_101194471	3300006806	Agricultural Soil	GATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0075425_1012778762	3300006854	Populus Rhizosphere	VPALEDRPIPIGAIVTVWYDDRDIDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKDP*
Ga0075434_1005076432	3300006871	Populus Rhizosphere	PIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0079219_117375212	3300006954	Agricultural Soil	MIAANRCCPPIPIGATVTAHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0105251_100730201	3300009011	Switchgrass Rhizosphere	VFAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRIIVVPWSTIRRKRL*
Ga0111538_100456477	3300009156	Populus Rhizosphere	VLAVPALDDQPIPIGATVTVHYDDREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0105248_105492722	3300009177	Switchgrass Rhizosphere	VPALEDRPIPIGAIVTVRYDDRDIDAAYVRIPIGESRHRIIVLPWTAVRRKDP*
Ga0105248_110039992	3300009177	Switchgrass Rhizosphere	VPALEDRPIPIGAIVTVWYDDREVDGELLGIALGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0134125_100869143	3300010371	Terrestrial Soil	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKDP*
Ga0134128_103220442	3300010373	Terrestrial Soil	VFAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0134128_121117542	3300010373	Terrestrial Soil	VPALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRNAAYVRIPISESRHRIILLPWTAIRRKDP*
Ga0105239_133667602	3300010375	Corn Rhizosphere	VFAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGKIRHRIIVVPWSTVRRKRR*
Ga0134124_100129154	3300010397	Terrestrial Soil	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAVRRKDP*
Ga0134127_131468211	3300010399	Terrestrial Soil	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRK
Ga0150983_149805732	3300011120	Forest Soil	EDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISASRHRIIVLPWTAIRRKDP
Ga0164300_100576472	3300012951	Soil	VPALEDRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIILLPWTAIRRKDH*
Ga0164300_107954562	3300012951	Soil	VLAVPALDEPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGKIRHRSIVVPWSTIRRKRL*
Ga0164298_115169292	3300012955	Soil	VFAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGKIRHRSIVVPWSTIRRKRL*
Ga0164303_113406791	3300012957	Soil	GSIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0164299_100870043	3300012958	Soil	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAMRRKDP*
Ga0164299_107344261	3300012958	Soil	VFAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRR*
Ga0164301_104784512	3300012960	Soil	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRKDP*
Ga0164302_101742622	3300012961	Soil	VLAVPALDEPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0164302_102073122	3300012961	Soil	VPALEDRPIPIGAIVTVWYDDREIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAMRRKDP*
Ga0164309_106422532	3300012984	Soil	VLAVPALDEPPIPIGATVTVHYDNREIDGELLGMALGGDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0164304_100431043	3300012986	Soil	VPALEDRPIPIGAIVTVWYDDREIDGELLGIAMGRDAAYVRIPIIESRHRIIVLPWTAMRRKDP*
Ga0164304_115723231	3300012986	Soil	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISASRHRIIVLPWTAIRRKDP*
Ga0164307_110111462	3300012987	Soil	VPALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISECRHRIILLPWTAIRRKDP*
Ga0164306_101062213	3300012988	Soil	VPALEDRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAMRRKDP*
Ga0164306_117956541	3300012988	Soil	VLAVPAFDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGKIRHRSIVVPWSTIRRKR
Ga0157371_104303092	3300013102	Corn Rhizosphere	DSSSLHHRPNNVLAVPALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL*
Ga0157370_101656201	3300013104	Corn Rhizosphere	HQLHRLAVVPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0157374_104995242	3300013296	Miscanthus Rhizosphere	VPALEDRPIPIGAVVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP*
Ga0157378_117549412	3300013297	Miscanthus Rhizosphere	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRNAAYVRIPISESRHRIILLPWTAIRRKDP*
Ga0163162_131509161	3300013306	Switchgrass Rhizosphere	ALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRNAAYVRIPISESRHRIILLPWTAIRRKDP*
Ga0157375_103787741	3300013308	Miscanthus Rhizosphere	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIV
Ga0157375_111705952	3300013308	Miscanthus Rhizosphere	VPALEDRPIPIGAVVTVWYDDREVDGELLGIAMGRDAAYVRIPISDSRHRIIVLPWTAIR
Ga0157375_134369351	3300013308	Miscanthus Rhizosphere	RLLIVPALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRNAAYVRIPISESRHRIILLPWTAIRRKDP*
Ga0157375_137782252	3300013308	Miscanthus Rhizosphere	VLAVPALDDPPIPIGATVTVQYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL*
Ga0132258_118033661	3300015371	Arabidopsis Rhizosphere	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPISESRHRIIV
Ga0132255_1056772251	3300015374	Arabidopsis Rhizosphere	VPVLDDRSIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIV
Ga0206356_117466872	3300020070	Corn, Switchgrass And Miscanthus Rhizosphere	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0206353_119919741	3300020082	Corn, Switchgrass And Miscanthus Rhizosphere	PIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIQHRTIVVPWSTIRRKRL
Ga0210402_110817952	3300021478	Soil	VLAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGGDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0207642_102122302	3300025899	Miscanthus Rhizosphere	VLAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0207647_101970671	3300025904	Corn Rhizosphere	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRIIV
Ga0207654_104502132	3300025911	Corn Rhizosphere	VLAVPALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL
Ga0207662_105874221	3300025918	Switchgrass Rhizosphere	VYAVPALDDPPIPIGATVTVRYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL
Ga0207649_106859002	3300025920	Corn Rhizosphere	VVPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKDP
Ga0207681_103023701	3300025923	Switchgrass Rhizosphere	LHHGPNNVLAVPALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0207659_111200471	3300025926	Miscanthus Rhizosphere	VLAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL
Ga0207700_112083342	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VLAVPALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTI
Ga0207691_108788562	3300025940	Miscanthus Rhizosphere	VPAIEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDTAYVRIPISESRHRIIVLPWTAIRRRDP
Ga0207689_115728791	3300025942	Miscanthus Rhizosphere	ALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKDP
Ga0207712_102929562	3300025961	Switchgrass Rhizosphere	VLAVPALDDQPIPIVATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0207640_101468711	3300025981	Corn Rhizosphere	LVVVPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKDP
Ga0207708_102007563	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP
Ga0207702_103066572	3300026078	Corn Rhizosphere	VFAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0207648_103841443	3300026089	Miscanthus Rhizosphere	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPW
Ga0207674_101825811	3300026116	Corn Rhizosphere	PPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRL
Ga0209074_103407871	3300027787	Agricultural Soil	VYAVPALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIALGRIRHHTIVVPWSTIRRKRL
Ga0268266_114387501	3300028379	Switchgrass Rhizosphere	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAVRRKDP
Ga0307279_101194131	3300028709	Soil	VSSLDDRPIPIGAIVTVRYDGREIDGELLGIAMGRVAAYVRIPISESRHRIIVLPWTAIRRKDP
Ga0307292_103729641	3300028811	Soil	GAIVTVRYDGREIDGELLGIAMGRVAAYVRIPISESRHRIIVLPWTAIRRKDP
Ga0222749_106506621	3300029636	Soil	DDRPIPIGAIVTVRYDDREVDGELLGIAMGRDAAYVRIPISESRHRIILLPWTAIRRKDH
Ga0318547_107283411	3300031781	Soil	PIPIGATVTVHYYNREIDGELLGTALGHEAAYVRIAIGKIRHRIIVVPWSTIRRKRL
Ga0307473_100069334	3300031820	Hardwood Forest Soil	VPALEDRPIPIGAIVTVWYDDREIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRRDP
Ga0318564_101882161	3300031831	Soil	MPIGAIVSVQYDDREVDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAIRRKN
Ga0310907_101713091	3300031847	Soil	VPALEDRPIPIGAIVTVWYDDREVDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAIRRR
Ga0310904_108735621	3300031854	Soil	VLAVPALDDQPIPIGATVTVHYDNREIDGELLGMALGRDAAYVSIAIGRIRHRSIVVPWSTIRRKRL
Ga0310892_101286712	3300031858	Soil	TVHYDNREIDGELLGMALGRDAAYVRIALGRIRHRTIVVPWSTIRRKRR
Ga0306925_111966182	3300031890	Soil	VAALDDRPVPIGAIVSVQYDDREVDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAIRRKN
Ga0306923_110910052	3300031910	Soil	VAALDDCPVPIGAIVSVQYDDREVDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAIRRKN
Ga0306926_129297062	3300031954	Soil	MLAVPAIDDLPIPIGATVTVHYDNREIDGELLGTALGHEAAYVRIAIGKIRHRIIVVPRSTIRHKRL
Ga0318569_101575783	3300032010	Soil	VLAVPAIDDLPIPIGATVTVHYDNREIDGELLGTALGHEAAYVRIAIGEIRHRIVVVPW
Ga0310902_108392861	3300032012	Soil	PALDDPPIPIGATVTVHYDNREIDGELLGMALGRDAAYVRIAIGRIRHRSIVVPWSTIRRKRL
Ga0310906_103538951	3300032013	Soil	VPALEDRPIPIGAIVTVRYDDRDIDGELLGIAMGRDAAYVRIPISESRHRIIVLPWTAV
Ga0318514_107451321	3300032066	Soil	ALDDCPVPIGAIVSVQYDDREVDGELLGIAMGRDAAYVRIPIGESRHRIIVLPWTAIRRK
Ga0307472_1004683761	3300032205	Hardwood Forest Soil	VPALDDRPIPIGAIVTVRYDDREVDGELLGIAMGRNAAYVRIPISESRHRIILLPWTAIRRKDP
Ga0318519_107351151	3300033290	Soil	VLAVPAIDDLPIPIGATVTVHYDNREIDGELLGTALGHEAAYVRIAIGKIRHRIIVVPWSTIRRKRL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090359

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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