NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F090188

Metagenome / Metatranscriptome Family F090188

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F090188
Family Type Metagenome / Metatranscriptome
Number of Sequences 108
Average Sequence Length 51 residues
Representative Sequence VKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATA
Number of Associated Samples 104
Number of Associated Scaffolds 108

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.15 %
% of genes from short scaffolds (< 2000 bps) 96.30 %
Associated GOLD sequencing projects 102
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (73.148 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(13.889 % of family members)
Environment Ontology (ENVO) Unclassified
(32.407 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(37.963 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: Yes Secondary Structure distribution: α-helix: 90.00%    β-sheet: 0.00%    Coil/Unstructured: 10.00%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 108 Family Scaffolds
PF12974Phosphonate-bd 97.22
PF028725_nucleotid_C 0.93
PF00672HAMP 0.93

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 108 Family Scaffolds
COG07372',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase familyDefense mechanisms [V] 0.93

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms73.15 %
UnclassifiedrootN/A26.85 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2067725003|GPWSG_F5G3JLY01ET8E8All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium525Open in IMG/M
3300000364|INPhiseqgaiiFebDRAFT_100772160Not Available1300Open in IMG/M
3300000881|JGI10215J12807_1042629All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1432Open in IMG/M
3300001139|JGI10220J13317_10109767Not Available975Open in IMG/M
3300001139|JGI10220J13317_10230727Not Available926Open in IMG/M
3300001661|JGI12053J15887_10185055All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1069Open in IMG/M
3300002886|JGI25612J43240_1007215All Organisms → cellular organisms → Bacteria → Proteobacteria1579Open in IMG/M
3300002914|JGI25617J43924_10265717All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium584Open in IMG/M
3300004633|Ga0066395_10354204All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium816Open in IMG/M
3300005204|Ga0068997_10165627All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium515Open in IMG/M
3300005289|Ga0065704_10774877All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium533Open in IMG/M
3300005295|Ga0065707_10919925All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium561Open in IMG/M
3300005406|Ga0070703_10111487Not Available979Open in IMG/M
3300005445|Ga0070708_101640710All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium598Open in IMG/M
3300005526|Ga0073909_10645993All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium526Open in IMG/M
3300005547|Ga0070693_100135215Not Available1546Open in IMG/M
3300005554|Ga0066661_10525649All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium712Open in IMG/M
3300005575|Ga0066702_10112166All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1573Open in IMG/M
3300005829|Ga0074479_10592081All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium600Open in IMG/M
3300005937|Ga0081455_10615635All Organisms → cellular organisms → Bacteria → Proteobacteria705Open in IMG/M
3300006791|Ga0066653_10541692All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium589Open in IMG/M
3300006844|Ga0075428_102482047All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium531Open in IMG/M
3300006903|Ga0075426_11363225All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium538Open in IMG/M
3300006904|Ga0075424_102520390All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium538Open in IMG/M
3300006914|Ga0075436_101331928All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium543Open in IMG/M
3300009101|Ga0105247_10527668All Organisms → cellular organisms → Bacteria864Open in IMG/M
3300009147|Ga0114129_12775280All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium583Open in IMG/M
3300009148|Ga0105243_12245329All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium583Open in IMG/M
3300009804|Ga0105063_1069924All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium541Open in IMG/M
3300009810|Ga0105088_1014223Not Available1206Open in IMG/M
3300009815|Ga0105070_1033351Not Available927Open in IMG/M
3300009822|Ga0105066_1162357All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300010047|Ga0126382_10222515All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1361Open in IMG/M
3300010361|Ga0126378_13283744All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium514Open in IMG/M
3300010362|Ga0126377_10260539All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1693Open in IMG/M
3300010400|Ga0134122_10413536Not Available1195Open in IMG/M
3300011406|Ga0137454_1006693Not Available1231Open in IMG/M
3300011419|Ga0137446_1137559All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium588Open in IMG/M
3300012202|Ga0137363_10017473All Organisms → cellular organisms → Bacteria4749Open in IMG/M
3300012359|Ga0137385_10637665All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium893Open in IMG/M
3300012582|Ga0137358_10859164All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium598Open in IMG/M
3300012925|Ga0137419_10135713All Organisms → cellular organisms → Bacteria → Proteobacteria1758Open in IMG/M
3300012948|Ga0126375_10068523All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1978Open in IMG/M
3300012961|Ga0164302_10928052All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium671Open in IMG/M
3300013307|Ga0157372_10366704All Organisms → cellular organisms → Bacteria1678Open in IMG/M
3300014885|Ga0180063_1067477Not Available1052Open in IMG/M
3300014968|Ga0157379_10607593Not Available1021Open in IMG/M
3300015077|Ga0173483_10046026All Organisms → cellular organisms → Bacteria1651Open in IMG/M
3300015245|Ga0137409_10417677All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1158Open in IMG/M
3300015262|Ga0182007_10063834Not Available1207Open in IMG/M
3300018028|Ga0184608_10410950All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium587Open in IMG/M
3300018029|Ga0187787_10284557All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium615Open in IMG/M
3300018074|Ga0184640_10440409All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium581Open in IMG/M
3300018084|Ga0184629_10269438All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium893Open in IMG/M
3300018084|Ga0184629_10566661All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium583Open in IMG/M
3300018089|Ga0187774_10024807All Organisms → cellular organisms → Bacteria → Proteobacteria2418Open in IMG/M
3300018422|Ga0190265_11185740Not Available882Open in IMG/M
3300018482|Ga0066669_10643776All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium932Open in IMG/M
3300019487|Ga0187893_10521280All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium770Open in IMG/M
3300019879|Ga0193723_1071912All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium997Open in IMG/M
3300019886|Ga0193727_1021159All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium2328Open in IMG/M
3300019888|Ga0193751_1155512All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium815Open in IMG/M
3300020004|Ga0193755_1115313Not Available841Open in IMG/M
3300021086|Ga0179596_10304635All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium795Open in IMG/M
3300021478|Ga0210402_10856704Not Available835Open in IMG/M
3300021479|Ga0210410_11650784All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium534Open in IMG/M
3300021560|Ga0126371_10346037Not Available1621Open in IMG/M
3300021972|Ga0193737_1067829All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium501Open in IMG/M
3300025904|Ga0207647_10156118Not Available1332Open in IMG/M
3300025910|Ga0207684_10944034All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium724Open in IMG/M
3300025916|Ga0207663_11331128All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium578Open in IMG/M
3300026005|Ga0208285_1002425Not Available1132Open in IMG/M
3300026023|Ga0207677_10289754Not Available1348Open in IMG/M
3300026304|Ga0209240_1098454Not Available1051Open in IMG/M
3300026358|Ga0257166_1001508All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria2190Open in IMG/M
3300026481|Ga0257155_1016061Not Available1045Open in IMG/M
3300026497|Ga0257164_1007967Not Available1287Open in IMG/M
3300026514|Ga0257168_1047062Not Available942Open in IMG/M
3300027411|Ga0207519_101615All Organisms → cellular organisms → Bacteria824Open in IMG/M
3300027650|Ga0256866_1063687Not Available982Open in IMG/M
3300027654|Ga0209799_1152499All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium526Open in IMG/M
3300027748|Ga0209689_1291984All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium636Open in IMG/M
3300027787|Ga0209074_10435397All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium557Open in IMG/M
3300027815|Ga0209726_10396728All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium643Open in IMG/M
3300027882|Ga0209590_10728581All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium633Open in IMG/M
3300028380|Ga0268265_10281489All Organisms → cellular organisms → Bacteria1488Open in IMG/M
3300028596|Ga0247821_10212295Not Available1149Open in IMG/M
3300028792|Ga0307504_10260588All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium638Open in IMG/M
3300028793|Ga0307299_10106650All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1048Open in IMG/M
3300028824|Ga0307310_10375459All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium702Open in IMG/M
3300030006|Ga0299907_10290175Not Available1336Open in IMG/M
3300030336|Ga0247826_10166054Not Available1473Open in IMG/M
(restricted) 3300031150|Ga0255311_1099074All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium630Open in IMG/M
(restricted) 3300031248|Ga0255312_1064508All Organisms → cellular organisms → Bacteria881Open in IMG/M
(restricted) 3300031248|Ga0255312_1098803All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium712Open in IMG/M
(restricted) 3300031248|Ga0255312_1190634All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300031545|Ga0318541_10453426All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium717Open in IMG/M
3300031561|Ga0318528_10571156All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium607Open in IMG/M
3300031720|Ga0307469_10350531Not Available1239Open in IMG/M
3300031794|Ga0318503_10085822All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium991Open in IMG/M
3300032065|Ga0318513_10104052All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1330Open in IMG/M
3300032205|Ga0307472_102216386All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium554Open in IMG/M
3300032421|Ga0310812_10501265All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium546Open in IMG/M
3300033290|Ga0318519_10975832All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium525Open in IMG/M
3300033486|Ga0316624_12164681All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium517Open in IMG/M
3300034177|Ga0364932_0203272All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium752Open in IMG/M
3300034643|Ga0370545_034218Not Available928Open in IMG/M
3300034817|Ga0373948_0067462All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium796Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil13.89%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.19%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil8.33%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.48%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.63%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere4.63%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere4.63%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment3.70%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil3.70%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand3.70%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil3.70%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil2.78%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil1.85%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland1.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil1.85%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.93%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands0.93%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.93%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.93%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.93%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.93%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil0.93%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.93%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.93%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil0.93%
Microbial Mat On RocksEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Microbial Mat On Rocks0.93%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere0.93%
Tabebuia Heterophylla RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.93%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.93%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.93%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.93%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.93%

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2067725003Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300000364Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300000881Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300001661Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)EnvironmentalOpen in IMG/M
3300002886Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300004633Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBioEnvironmentalOpen in IMG/M
3300005204Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleA_D2EnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005295Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300005406Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005554Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110EnvironmentalOpen in IMG/M
3300005575Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151EnvironmentalOpen in IMG/M
3300005829Microbial communities from Cathlamet Bay sediment, Columbia River estuary, Oregon - S.190_CBCEnvironmentalOpen in IMG/M
3300005937Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1Host-AssociatedOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009101Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaGHost-AssociatedOpen in IMG/M
3300009147Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)Host-AssociatedOpen in IMG/M
3300009148Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaGHost-AssociatedOpen in IMG/M
3300009804Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_30_40EnvironmentalOpen in IMG/M
3300009810Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30EnvironmentalOpen in IMG/M
3300009815Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10EnvironmentalOpen in IMG/M
3300009822Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40EnvironmentalOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300011406Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT539_2EnvironmentalOpen in IMG/M
3300011419Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2EnvironmentalOpen in IMG/M
3300012202Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaGEnvironmentalOpen in IMG/M
3300012359Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaGEnvironmentalOpen in IMG/M
3300012582Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014885Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_10DEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015262Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaGHost-AssociatedOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018029Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MGEnvironmentalOpen in IMG/M
3300018074Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018482Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118EnvironmentalOpen in IMG/M
3300019487White microbial mat communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-4 metaGEnvironmentalOpen in IMG/M
3300019879Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2m2EnvironmentalOpen in IMG/M
3300019886Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020004Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2EnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300021972Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m2EnvironmentalOpen in IMG/M
3300025904Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025916Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026005Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_25C_0N_101 (SPAdes)EnvironmentalOpen in IMG/M
3300026023Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026304Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)EnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026481Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-AEnvironmentalOpen in IMG/M
3300026497Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-08-BEnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300027411Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G01A2-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027650Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67 HiSeqEnvironmentalOpen in IMG/M
3300027654Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)EnvironmentalOpen in IMG/M
3300027748Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300027815Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)EnvironmentalOpen in IMG/M
3300027882Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028596Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14EnvironmentalOpen in IMG/M
3300028792Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_SEnvironmentalOpen in IMG/M
3300028793Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159EnvironmentalOpen in IMG/M
3300028824Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300030336Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1EnvironmentalOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031545Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26EnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300032065Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20EnvironmentalOpen in IMG/M
3300032205Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05EnvironmentalOpen in IMG/M
3300032421Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3EnvironmentalOpen in IMG/M
3300033290Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15EnvironmentalOpen in IMG/M
3300033486Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_N3_C1_D5_AEnvironmentalOpen in IMG/M
3300034177Sediment microbial communities from East River floodplain, Colorado, United States - 17_j17EnvironmentalOpen in IMG/M
3300034643Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034817Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
GPWSG_006775302067725003SoilVRSSLRTLLLGLSSVAIVAVTLGGLAVNLRDRSTAARV
INPhiseqgaiiFebDRAFT_10077216033300000364SoilVRSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAARVRLGEQTE
JGI10215J12807_104262913300000881SoilVRSSLRTLLLGLSSVAIVAVTLGGLAVNLRDRSTAARVRLGEQTERLA
JGI10220J13317_1010976713300001139SoilVRSSLRTLLLGLSSVAIVAVTLGGLAVNLRDRSTAARVRLGEQTERLATAA
JGI10220J13317_1023072723300001139SoilVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQ
JGI12053J15887_1018505523300001661Forest SoilVTSSLRTLLLGLSSVAIVAVTLSGLAVNLRDSSTAARMRLSEQTERLGTAAAPL
JGI25612J43240_100721513300002886Grasslands SoilVRNSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQVRLAEQTERLAAAAGPLLLDSLVVGD
JGI25617J43924_1026571713300002914Grasslands SoilVRNSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQVRL
Ga0066395_1035420423300004633Tropical Forest SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQ
Ga0068997_1016562713300005204Natural And Restored WetlandsVKSSLRTLLLGFSSVAIVVVTLSGLALNLRDRSTAAQVRLSEQTQRLATAAA
Ga0065704_1077487713300005289Switchgrass RhizosphereVKSSLRTLLLGISSVAIVVVTLSGLAVNLRDRSNAAQVRLSEQTERLATAAGPLLLDSLVVGDLAR
Ga0065707_1091992513300005295Switchgrass RhizosphereVKSSLRTLLLGISSVAIVVVTLSGLAVNLRDRSNAAQVRLSEQTERLA
Ga0070703_1011148723300005406Corn, Switchgrass And Miscanthus RhizosphereVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATAAGPLLLDSLV
Ga0070708_10164071013300005445Corn, Switchgrass And Miscanthus RhizosphereVKSSLRALILGVSTATIVVVTLGGLAVNLRDRSTAARMRLSEQTERLATAAGPLLLDALV
Ga0073909_1064599313300005526Surface SoilVKPSLRALLLGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQTERLATAAGPLLLDA
Ga0070693_10013521523300005547Corn, Switchgrass And Miscanthus RhizosphereVKSSLRTLLLGISSVAIVVVTLSGLAVNLRDRSNAAQVRLSEQTERLAT
Ga0066661_1052564913300005554SoilVRSSLRTLLLGLSTVAIVSVTLGGLAVNLRERSTAAQMRLAEQTDRLAAAAAPL
Ga0066702_1011216613300005575SoilVKSSLRALLLGVSSVAIVAVTLGGLAVNLSDRSTAARMRLSEQTERLGTA
Ga0074479_1059208113300005829Sediment (Intertidal)VKSSLRTLLLGLSSVAIVVVTLSGLAVNLRDRSTAAQVRLSEQTQRLATAAAPLLL
Ga0081455_1061563533300005937Tabebuia Heterophylla RhizosphereVRSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAARVRLGEQTERLATAAAPL
Ga0066653_1054169213300006791SoilVTSSLRTLLLGLSSVAIVAVTLSALAVNLRDSSTAARMRLSEQTERLGTAAAPLLL
Ga0075428_10248204713300006844Populus RhizosphereVRSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAARVRLGEQTERLATAA
Ga0075426_1136322523300006903Populus RhizosphereVRSSLRTLLLGLSTVAIVSVTLGGLAVNLRERSTAAQMRLAEQ
Ga0075424_10252039013300006904Populus RhizosphereVKSSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTA
Ga0075436_10133192823300006914Populus RhizosphereVRSSLRTLLLGLSTVAIVSVTLGGLAVNLRERSTAAQMRLAEQTDRLAAA
Ga0105247_1052766823300009101Switchgrass RhizosphereVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATAAGPLLLD
Ga0114129_1277528023300009147Populus RhizosphereVKSSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQMRLAEQTDRLAAA
Ga0105243_1224532913300009148Miscanthus RhizosphereVKSSLRTLLLGISSVAIVVVTLSGLAVNLRDRSNAAQVRLSEQTERLATAAGPLL
Ga0105063_106992423300009804Groundwater SandVKSSLRTLLLGLSSVAIVSVTLSGLAVSLRDRSTAAT
Ga0105088_101422323300009810Groundwater SandMKFSLRTLLLGLASVAIIVVTLGGLAFNLKDRIAAAELRLAAQTQRLTAAGA
Ga0105070_103335113300009815Groundwater SandMKFSLRTLLLGLASVAIIIVTLGGLAFNLKDRIAAAELRLAAQTQRLTAAGAPLLLN
Ga0105066_116235713300009822Groundwater SandMKFSLRTLLLGLASVAIIIVTLGGLAFNLKDRIAAAELRLAAQTQRLTAAGAPLLLNA
Ga0126382_1022251533300010047Tropical Forest SoilVRSSLRTLLLGLSSVAIVAVTLGGLAVNLSDRSTAARVRLGE*
Ga0126378_1328374413300010361Tropical Forest SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQTERLASAAGP
Ga0126377_1026053933300010362Tropical Forest SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAAR
Ga0134122_1041353613300010400Terrestrial SoilVKSSLRALLLGISSVAIVVVTLGGLAVNLRDRSNAAQVRLSEQTERLATAAGPLLLDSL
Ga0137454_100669313300011406SoilVKSSLRTLLLGVSSVAIVVVTLSGLAVNLRDRSNAARVRLSEQTERLATAAAPLLLDSL
Ga0137446_113755913300011419SoilVKSSLRTLLLGFSSVAIVVVTLSGLAVNLRDRSNAARARLSEQTERLATAAAP
Ga0137363_1001747313300012202Vadose Zone SoilVRSSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQMRLAE
Ga0137385_1063766513300012359Vadose Zone SoilVRSSLRTLLLGLSSVAIVSVTLGGLAVNLRDRSTAAQVRLAEQTERLAAAAAPLLLDSLVVGDLA
Ga0137358_1085916413300012582Vadose Zone SoilVKSSLRALLLGLSSVAIVAVTLGGLAVNLRDRSTAARMRLSEQTE
Ga0137419_1013571313300012925Vadose Zone SoilVKSSLRALLLGISSVAIVVVTLGGLAVNLRDRSHAAQVRLSEQTERLATAAGPLLLDSLVVGDL
Ga0126375_1006852313300012948Tropical Forest SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQTERLASAAGPLLLDAL
Ga0164302_1092805223300012961SoilVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATAAGP
Ga0157372_1036670413300013307Corn RhizosphereVRSSLRTLLLGLSSVAIVAVTLGGLAVNLRDRSTAARVRLGA
Ga0180063_106747723300014885SoilVKSSLRTLLLGFSSVAIVVVTLSGLAVNLRDRSTAARVRLSEQTERLATA
Ga0157379_1060759313300014968Switchgrass RhizosphereVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATAAG
Ga0173483_1004602613300015077SoilVRSSLRTLLLGLSSVAIVAVTLGGLAVNLRDRSTAARVRLGEQTE
Ga0137409_1041767713300015245Vadose Zone SoilVTSSLRALLLGLSSVAIVAVTLGGLAVNLRDRSTAARMR
Ga0182007_1006383423300015262RhizosphereVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATAAGPLLLDSLVVGDLA
Ga0184608_1041095023300018028Groundwater SedimentVKSSLRALLLGISSVAIVVVTLGGLAVNLRDRSNAAQVRLSEQTERLATAAGP
Ga0187787_1028455713300018029Tropical PeatlandVRSSLRTLLLGLSSVAIVTVTLGGLLVSLSERSTAARVRLGEQTERL
Ga0184640_1044040923300018074Groundwater SedimentVKSSLRTLLLGFSSVAIVVVTLSGLAVNLRDRSNAARVRLSEQTERL
Ga0184629_1026943813300018084Groundwater SedimentVKSSLRTLLLGVSSVAIVVVTLSGLAVNLRDRSNAARVRLSEQTERLATAAAPLLLDSLVVGDL
Ga0184629_1056666113300018084Groundwater SedimentVKSSLRTLLLGVSSVAIVVVTLSVLAVNLRDRSNAARVRLSEQTERLATAAAPLLLDSLVVGDL
Ga0187774_1002480743300018089Tropical PeatlandVRSSLRTLLLGLSSVAIVTVTLGGLLVSLSERSTAARV
Ga0190265_1118574013300018422SoilVKSSLRTLLLGFSSVAIVVVTLSGLAVNLRDRSNAARVRLSEQTERLAAAA
Ga0066669_1064377613300018482Grasslands SoilVTSSLRTLLLGLSSVAIVAVTLSGLAVNLRDSSTAARMRLSEQTERLGTAAAPLL
Ga0187893_1052128023300019487Microbial Mat On RocksVKSSLRTLLLGLSSVAIVVVTLSGLAVNLRDRSNAAQVRLSEQTERLAAAAGPLLLDSLVVGDLA
Ga0193723_107191223300019879SoilVKSSLRALLLGISSVAIVVVTLGGLAVNLRDRSHAAQVRLSEQTERLATAAGSGPRSAP
Ga0193727_102115943300019886SoilVKSSLRALLLGISSVAIVVVTLGGLAVNLRDRSHAAQVRLSEQTERLATAAGPLL
Ga0193751_115551223300019888SoilVRNSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQV
Ga0193755_111531313300020004SoilVKSSLRTLLLGVSSVAIVVVTLSGLAVNLRDRSNAARVRL
Ga0179596_1030463523300021086Vadose Zone SoilVRSSLRTLLLGLSSVAIVSVTLGGLAVNLRDRSTAAQVRLAEQTERLAAAAAPLL
Ga0210402_1085670423300021478SoilVKSSLRTLLIGLTSVAIAAVTLGGLAINLRDRSTAAQVR
Ga0210410_1165078423300021479SoilVRSSLRTLLLGLSTVAIVSVTLGGLAVNLRERSTAAQMRLAEQTDR
Ga0126371_1034603713300021560Tropical Forest SoilVKSSLRTLLLGLTSVAIVAVTLGGLVVNLGDRSTAARVRLIEQ
Ga0193737_106782923300021972SoilVKSSLRTLLLGFSSVAIVVVTLSGLAVNLRDRSNAARVRLSEQTERLATAAAPLLLDSLVVG
Ga0207647_1015611813300025904Corn RhizosphereVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLTTAAGP
Ga0207684_1094403423300025910Corn, Switchgrass And Miscanthus RhizosphereVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTE
Ga0207663_1133112813300025916Corn, Switchgrass And Miscanthus RhizosphereVKPSLRALLLGVSSAAIVVVTLGGLAVNLRDRSTAARMRLSEQTERLATETPRRSA
Ga0208285_100242523300026005Rice Paddy SoilVRSSLRTLLLGLSSVAIVSVTLSGLAVNLRDRSTAAQERLAEQTERLAGAAAPLLLDSLVVGDLAR
Ga0207677_1028975433300026023Miscanthus RhizosphereVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATA
Ga0209240_109845413300026304Grasslands SoilVRSSLRTLLLGLSSVAIVSVTLGGLAVNLRDRSTAAQVRLAEQTERLAAAAAPLLLDS
Ga0257166_100150833300026358SoilVRNSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQVRLAEQTERLAAAAAPLLLDSLVVG
Ga0257155_101606123300026481SoilVRNSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQVRLAEQTERLAAAAG
Ga0257164_100796723300026497SoilVRNSLRTLLLGLSSVAIVSVTLGGLAVNLRERSTAAQVRLAEQTERLAAAAGPLLLDSLV
Ga0257168_104706223300026514SoilVRNSLRTLLLGLSSVAIVSVTLGGLAINLRERSTAAQVRLAEQTERLAAAA
Ga0207519_10161513300027411SoilVRSSLRTLLLGLSSVAIVAVTLGGLAVNLRDRSTAARVRLGEQT
Ga0256866_106368713300027650SoilVKSSLRSLLLGLSSVAIVVVTLSGLAVNLRERSNAARVRLSEQTERLAA
Ga0209799_115249913300027654Tropical Forest SoilVKPSLRALILGVSSVAIVVVTLSGLAVNLRDRSTAARMRLSEQTERLATAA
Ga0209689_129198413300027748SoilVKSSLRALLLGVSSVAIVAVTLGGLAVNLSDRSTAARMRLSEQT
Ga0209074_1043539713300027787Agricultural SoilVRSSLRTLLLGLSSVAIVSVTLSGLAINLRDRSGAAQARLAEQTERLATAAAP
Ga0209726_1039672813300027815GroundwaterVKSSLRTLLLGFSSVAIVLVTLSGLAVNLRDRSNAARVRLSEQTERL
Ga0209590_1072858123300027882Vadose Zone SoilVKSSLRGLLLGISSVAIVVVTLGGLAVNLRDRSNA
Ga0268265_1028148933300028380Switchgrass RhizosphereVKSSLRTLLLGISSVAIVVVTLSGLAVNLRDRSNAAQVRLSEQTERLATAAGPLLLDSLVVGDLARAE
Ga0247821_1021229513300028596SoilVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVRLSEQTERLATAAGPLL
Ga0307504_1026058823300028792SoilVKSSLRTLLLGLSSVAIVTVTLGGLVVNLSERSTAAR
Ga0307299_1010665023300028793SoilVKSSLRALLLGISSVAIVVVTLGGLAVNLRDRSNAAQVRLSEQTERLATAAGPLLLD
Ga0307310_1037545913300028824SoilVKSSLRTLLLGVSSVAIVVVTLSGLAVNLRDRSNAARVRLSEQTERLATAAAPLL
Ga0299907_1029017533300030006SoilVKSSLRSLLLGLSSVAIVVVTLSGLAVNLRERSNAARVRLSEQT
Ga0247826_1016605433300030336SoilVKSSLRTLLLGLSSVAIVTVTLGGLAVNLRDRSTAAQVR
(restricted) Ga0255311_109907423300031150Sandy SoilVKPSLRTLLLGFSIVAIVVVTLSGLAVNLRDRSTAAQVRLSEQ
(restricted) Ga0255312_106450823300031248Sandy SoilVRSSLRALLLGLSSVAIVTVTLSGLAVSLRDRSTAATARLGEQTER
(restricted) Ga0255312_109880323300031248Sandy SoilVTSSLRTLLLGLSSVAIVVVTLSGLVVNLRERSTAAQVRLSEQTERLATA
(restricted) Ga0255312_119063413300031248Sandy SoilVRSSLRTLLLGLSSVAIVSVTLSGLAVNLRDRSTAAQERLAEQTERLAGAAA
Ga0318541_1045342623300031545SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQTERLASAAGPLLLDALVVGDLARAE
Ga0318528_1057115623300031561SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQTERLAS
Ga0307469_1035053113300031720Hardwood Forest SoilVRSSLRALLLGLSSVAIVTVTLSGLAVSLRDRSTAATTRLGEQT
Ga0318503_1008582223300031794SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQT
Ga0318513_1010405213300032065SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAARMRLSEQTERLASAAGPLLLDALVVG
Ga0307472_10221638613300032205Hardwood Forest SoilVKSSLRALILGVSTATIVVVTLGGLAVNLRDRSTAARMRLSEQTERLATAAGPLLLD
Ga0310812_1050126513300032421SoilVRSSLRTLLLGLSSVAIVSVTLSGLAINLRDRSGAAQTRLA
Ga0318519_1097583223300033290SoilVKPSLRALILGVSSVAIVVVTLGGLAVNLRDRSTAA
Ga0316624_1216468113300033486SoilVRSSLRTLLLGLSSVAIVGVTLSGLAVNLRDRSGAAQARLAEQTERLATAAAPLLLDSLVVGDLA
Ga0364932_0203272_3_1763300034177SedimentVRSSLRALLLGLSSVAIVTVTLGGLAVNLRDRSTAATVRLGEQTERLATAAAPLLLDS
Ga0370545_034218_819_9263300034643SoilVKSSLRTLLLGFSSVAIVVVTLSGLAVNLRDRSNAA
Ga0373948_0067462_653_7963300034817Rhizosphere SoilVRSSLRTLLLGLSSVAIVSVTLSGLAVNLRDRSTAAQERLAEQTERLA

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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