Metagenome / Metatranscriptome Family F090004

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090004
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	95 residues
Representative Sequence	MKKLFATVSLAAGLAAVIASPALAQNGKHRHVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLAHDPTQGD
Number of Associated Samples	73
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	68.87 %
% of genes near scaffold ends (potentially truncated)	29.63 %
% of genes from short scaffolds (< 2000 bps)	71.30 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.24

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (68.519 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (33.333 % of family members)
Environment Ontology (ENVO)	Unclassified (38.889 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (42.593 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 27.05% β-sheet: 7.38% Coil/Unstructured: 65.57%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.24
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.24
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF13602	ADH_zinc_N_2	24.53
PF00326	Peptidase_S9	8.49
PF00107	ADH_zinc_N	8.49
PF08240	ADH_N	7.55
PF03741	TerC	2.83
PF03401	TctC	1.89
PF00596	Aldolase_II	0.94
PF08388	GIIM	0.94
PF00920	ILVD_EDD	0.94
PF01066	CDP-OH_P_transf	0.94
PF01425	Amidase	0.94
PF02653	BPD_transp_2	0.94
PF00174	Oxidored_molyb	0.94

COG ID	Name	Functional Category	% Frequency in 106 Family Scaffolds
COG0861	Tellurite resistance membrane protein TerC	Inorganic ion transport and metabolism [P]	2.83
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.89
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.89
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	0.94
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	0.94
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	0.94
COG2041	Molybdopterin-dependent catalytic subunit of periplasmic DMSO/TMAO and protein-methionine-sulfoxide reductases	Energy production and conversion [C]	0.94
COG3915	Uncharacterized conserved protein	Function unknown [S]	0.94
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	68.52 %
Unclassified	root	N/A	31.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	68.52 %
Unclassified	root	N/A	31.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	68.52 %
Unclassified	root	N/A	31.48 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	63.89 %
Unclassified	root	N/A	31.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.89 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.93 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Bradyrhizobium altum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium altum	0.93 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	31.48 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.93 %
Bradyrhizobium altum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium altum	0.93 %
Hyphomicrobiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002568\|C688J35102_120944568	All Organisms → cellular organisms → Bacteria	2744	Open in IMG/M
3300005332\|Ga0066388_100000342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21114	Open in IMG/M
3300005332\|Ga0066388_100000342	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21114	Open in IMG/M
3300005332\|Ga0066388_100182573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2707	Open in IMG/M
3300005332\|Ga0066388_100212172	All Organisms → cellular organisms → Bacteria	2562	Open in IMG/M
3300005440\|Ga0070705_101190748	Not Available	627	Open in IMG/M
3300005598\|Ga0066706_10286321	All Organisms → cellular organisms → Bacteria → Proteobacteria	1293	Open in IMG/M
3300005713\|Ga0066905_100022976	All Organisms → cellular organisms → Bacteria → Proteobacteria	3367	Open in IMG/M
3300005713\|Ga0066905_102006606	Not Available	537	Open in IMG/M
3300005764\|Ga0066903_104188713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	772	Open in IMG/M
3300005764\|Ga0066903_106383782	Not Available	615	Open in IMG/M
3300005937\|Ga0081455_10016686	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7073	Open in IMG/M
3300005937\|Ga0081455_10026579	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5319	Open in IMG/M
3300005983\|Ga0081540_1194873	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300006034\|Ga0066656_10692529	Not Available	655	Open in IMG/M
3300006854\|Ga0075425_101318935	Not Available	818	Open in IMG/M
3300009090\|Ga0099827_10344708	All Organisms → cellular organisms → Bacteria → Proteobacteria	1267	Open in IMG/M
3300009137\|Ga0066709_100587414	All Organisms → cellular organisms → Bacteria → Proteobacteria	1584	Open in IMG/M
3300009143\|Ga0099792_10104275	All Organisms → cellular organisms → Bacteria → Proteobacteria	1495	Open in IMG/M
3300009147\|Ga0114129_10196134	All Organisms → cellular organisms → Bacteria → Proteobacteria	2738	Open in IMG/M
3300009792\|Ga0126374_10348445	All Organisms → cellular organisms → Bacteria → Proteobacteria	1014	Open in IMG/M
3300009792\|Ga0126374_11022081	Not Available	650	Open in IMG/M
3300010047\|Ga0126382_10401410	Not Available	1070	Open in IMG/M
3300010047\|Ga0126382_10453832	All Organisms → cellular organisms → Bacteria → Proteobacteria	1017	Open in IMG/M
3300010047\|Ga0126382_11091308	Not Available	707	Open in IMG/M
3300010047\|Ga0126382_11448910	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300010358\|Ga0126370_10379730	All Organisms → cellular organisms → Bacteria → Proteobacteria	1153	Open in IMG/M
3300010359\|Ga0126376_10005287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7715	Open in IMG/M
3300010360\|Ga0126372_10106796	Not Available	2122	Open in IMG/M
3300010360\|Ga0126372_10523780	All Organisms → cellular organisms → Bacteria → Proteobacteria	1119	Open in IMG/M
3300010360\|Ga0126372_10838386	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300010360\|Ga0126372_12300746	Not Available	589	Open in IMG/M
3300010362\|Ga0126377_10028208	All Organisms → cellular organisms → Bacteria → Proteobacteria	4713	Open in IMG/M
3300010362\|Ga0126377_10109754	All Organisms → cellular organisms → Bacteria → Proteobacteria	2531	Open in IMG/M
3300010362\|Ga0126377_10109754	All Organisms → cellular organisms → Bacteria → Proteobacteria	2531	Open in IMG/M
3300010362\|Ga0126377_10875867	Not Available	960	Open in IMG/M
3300010362\|Ga0126377_11304686	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300010362\|Ga0126377_12622971	Not Available	579	Open in IMG/M
3300010362\|Ga0126377_13248408	Not Available	525	Open in IMG/M
3300010398\|Ga0126383_10690209	All Organisms → cellular organisms → Bacteria → Proteobacteria	1099	Open in IMG/M
3300012199\|Ga0137383_11316044	Not Available	514	Open in IMG/M
3300012202\|Ga0137363_10745915	All Organisms → cellular organisms → Bacteria → Proteobacteria	829	Open in IMG/M
3300012206\|Ga0137380_10426129	All Organisms → cellular organisms → Bacteria → Proteobacteria	1175	Open in IMG/M
3300012212\|Ga0150985_111395773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium	796	Open in IMG/M
3300012212\|Ga0150985_118721174	All Organisms → cellular organisms → Bacteria → Proteobacteria	737	Open in IMG/M
3300012349\|Ga0137387_10124811	Not Available	1817	Open in IMG/M
3300012351\|Ga0137386_10562451	All Organisms → cellular organisms → Bacteria → Proteobacteria	821	Open in IMG/M
3300012351\|Ga0137386_11122489	Not Available	554	Open in IMG/M
3300012357\|Ga0137384_10367361	Not Available	1191	Open in IMG/M
3300012360\|Ga0137375_10052028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4462	Open in IMG/M
3300012361\|Ga0137360_10697896	All Organisms → cellular organisms → Bacteria → Proteobacteria	871	Open in IMG/M
3300012469\|Ga0150984_119445646	All Organisms → cellular organisms → Bacteria → Proteobacteria	540	Open in IMG/M
3300012469\|Ga0150984_123135699	All Organisms → cellular organisms → Bacteria → Proteobacteria	1129	Open in IMG/M
3300012582\|Ga0137358_10640496	Not Available	712	Open in IMG/M
3300012685\|Ga0137397_10026725	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4091	Open in IMG/M
3300012685\|Ga0137397_10044629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium altum	3170	Open in IMG/M
3300012922\|Ga0137394_10123902	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2189	Open in IMG/M
3300012924\|Ga0137413_10624525	All Organisms → cellular organisms → Bacteria → Proteobacteria	809	Open in IMG/M
3300012925\|Ga0137419_11079191	All Organisms → cellular organisms → Bacteria → Proteobacteria	668	Open in IMG/M
3300012927\|Ga0137416_10398344	All Organisms → cellular organisms → Bacteria → Proteobacteria	1166	Open in IMG/M
3300012927\|Ga0137416_10476969	All Organisms → cellular organisms → Bacteria → Proteobacteria	1071	Open in IMG/M
3300012929\|Ga0137404_10098179	All Organisms → cellular organisms → Bacteria → Proteobacteria	2357	Open in IMG/M
3300012929\|Ga0137404_10970845	All Organisms → cellular organisms → Bacteria → Proteobacteria	777	Open in IMG/M
3300012930\|Ga0137407_10546967	All Organisms → cellular organisms → Bacteria → Proteobacteria	1084	Open in IMG/M
3300012930\|Ga0137407_10788955	All Organisms → cellular organisms → Bacteria → Proteobacteria	897	Open in IMG/M
3300012944\|Ga0137410_10300114	All Organisms → cellular organisms → Bacteria → Proteobacteria	1272	Open in IMG/M
3300012971\|Ga0126369_10675632	All Organisms → cellular organisms → Bacteria → Proteobacteria	1108	Open in IMG/M
3300012971\|Ga0126369_12925343	Not Available	559	Open in IMG/M
3300012971\|Ga0126369_13278313	Not Available	530	Open in IMG/M
3300015241\|Ga0137418_10129644	All Organisms → cellular organisms → Bacteria	2241	Open in IMG/M
3300015241\|Ga0137418_11036267	Not Available	590	Open in IMG/M
3300015242\|Ga0137412_10016577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	5970	Open in IMG/M
3300015242\|Ga0137412_10253234	All Organisms → cellular organisms → Bacteria → Proteobacteria	1392	Open in IMG/M
3300018028\|Ga0184608_10017710	All Organisms → cellular organisms → Bacteria → Proteobacteria	2539	Open in IMG/M
3300018051\|Ga0184620_10024997	Not Available	1522	Open in IMG/M
3300018054\|Ga0184621_10003708	All Organisms → cellular organisms → Bacteria → Proteobacteria	4047	Open in IMG/M
3300018073\|Ga0184624_10235392	All Organisms → cellular organisms → Bacteria → Proteobacteria	820	Open in IMG/M
3300018431\|Ga0066655_10693155	Not Available	689	Open in IMG/M
3300019233\|Ga0184645_1099624	Not Available	552	Open in IMG/M
3300019789\|Ga0137408_1104909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3944	Open in IMG/M
3300019876\|Ga0193703_1030772	All Organisms → cellular organisms → Bacteria → Proteobacteria	833	Open in IMG/M
3300019886\|Ga0193727_1110520	All Organisms → cellular organisms → Bacteria → Proteobacteria	798	Open in IMG/M
3300020170\|Ga0179594_10007642	All Organisms → cellular organisms → Bacteria → Proteobacteria	2877	Open in IMG/M
3300020170\|Ga0179594_10358944	Not Available	553	Open in IMG/M
3300021073\|Ga0210378_10217043	All Organisms → cellular organisms → Bacteria → Proteobacteria	728	Open in IMG/M
3300022756\|Ga0222622_10030668	All Organisms → cellular organisms → Bacteria → Proteobacteria	2864	Open in IMG/M
3300024288\|Ga0179589_10561472	Not Available	533	Open in IMG/M
3300027903\|Ga0209488_10000818	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	26357	Open in IMG/M
3300028536\|Ga0137415_10225595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1687	Open in IMG/M
3300028782\|Ga0307306_10174234	Not Available	607	Open in IMG/M
3300028793\|Ga0307299_10366803	Not Available	540	Open in IMG/M
3300028878\|Ga0307278_10393893	Not Available	609	Open in IMG/M
3300030514\|Ga0268253_10217104	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300030829\|Ga0308203_1030523	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300031099\|Ga0308181_1132449	Not Available	569	Open in IMG/M
3300031152\|Ga0307501_10006330	Not Available	1776	Open in IMG/M
3300031184\|Ga0307499_10051527	All Organisms → cellular organisms → Bacteria → Proteobacteria	1010	Open in IMG/M
3300031198\|Ga0307500_10007163	All Organisms → cellular organisms → Bacteria → Proteobacteria	2295	Open in IMG/M
3300031198\|Ga0307500_10061961	All Organisms → cellular organisms → Bacteria → Proteobacteria	930	Open in IMG/M
3300031740\|Ga0307468_100022247	All Organisms → cellular organisms → Bacteria	2830	Open in IMG/M
3300032174\|Ga0307470_10201243	All Organisms → cellular organisms → Bacteria → Proteobacteria	1273	Open in IMG/M
3300032174\|Ga0307470_10227728	All Organisms → cellular organisms → Bacteria → Proteobacteria	1214	Open in IMG/M
3300032180\|Ga0307471_103511204	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300032205\|Ga0307472_100604050	All Organisms → cellular organisms → Bacteria → Proteobacteria	969	Open in IMG/M
3300034681\|Ga0370546_035306	All Organisms → cellular organisms → Bacteria → Proteobacteria	726	Open in IMG/M
3300034681\|Ga0370546_059106	Not Available	607	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	90.74%
Host-Associated	Host-Associated	9.26%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.26%
Plants	Host-Associated → Plants	9.26%
Aquatic	Environmental → Aquatic	6.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.26%
Sediment	Environmental → Aquatic → Sediment	4.63%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.63%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.70%
Freshwater	Environmental → Aquatic → Freshwater	1.85%
Phylloplane	Host-Associated → Plants → Phylloplane	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	75.00%
Loam	Environmental → Terrestrial → Soil → Loam	9.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.63%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.78%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.85%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	66.67%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.41%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.63%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.63%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.70%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.78%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.93%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.93%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.93%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	33.33%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.30%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	12.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.41%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.63%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.70%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	2.78%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.85%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	1.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.93%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.93%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.93%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012209	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_80_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018054	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300019233	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019876	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3a2	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028782	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_193	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028878	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_117	Environmental	Open in IMG/M
3300030514	Agave microbial communities from Guanajuato, Mexico - Mg.Ma.rz (v2)	Host-Associated	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300034681	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
C688J35102_1209445682	3300002568	Soil	MKKLFTTVSVVAGLAAIIASPALAQNGKHRHQVRDTYAASNPFTAYAAAPYRGYQAVQPSRGSYTVYDIRGQRVGSDPDATVRDQLARDPSQGD*
Ga0066388_1000003423	3300005332	Tropical Forest Soil	MKKLFATMSLAAAVAAVIVSPALAQNGTHRHARDAYAASNPFAAYGSYRAQRPSARGSYSVYDTRGQYVGSDPDPTIRSQLAHDPGQGSD*
Ga0066388_1000003424	3300005332	Tropical Forest Soil	MKKLFATLSLATAVAAVIASPALAQNGKHRQHRDPYAASSPYGAYAAPYGSYQAQRPSARGSYSVYDVRGQYVGSDPDPRIRDQLARDPGQGSGD*
Ga0066388_1001825731	3300005332	Tropical Forest Soil	MTKLFTTVSLAVGLAAVIASPALAQNGKHRHQVRDSYAVSNPFSAYAAAPYRSYQPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPSQGS*
Ga0066388_1002121724	3300005332	Tropical Forest Soil	MTKLLTTVSVAAGLVAVIASPALAQSGKHRHQVRDPYAVSNPFSSYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGADPDPDVRNQLARDPSQGD*
Ga0070705_1011907482	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	IASPALAQSGKHRQHVRAPYAASNPYAAYAAAPYGSYQPARPSARGSYSVYDIRGNRVGSDPDPTVRDQLAHDPSQGD*
Ga0066706_102863212	3300005598	Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPYSSYRAVRPSAGGSYSVYDIRGNRVGSDPDATVRDQLAHDPTQGD*
Ga0066905_1000229762	3300005713	Tropical Forest Soil	MKKLFTTVSLVAGLVAVVASPALAQNAKHRQARDPYAASNPYAAYAAPYGQVQRPSRGSYSVYDIRGRRIGADPDATVRDQLAHDPTQGD*
Ga0066905_1020066061	3300005713	Tropical Forest Soil	MTKLLATVSLAAGLAAVIASPALAQNSKHRQVRDPYAVSNPFSAYAAAPYSYRPVRPSARGSYSVYDIRGNRIGSDPDPDVRNQLARDPTQGD*
Ga0066903_1041887132	3300005764	Tropical Forest Soil	MKKLIATVSVAAGLAAIIASPALAHNAKHRHVRAPYAASNPYNAYAAAPYGSYRPVRRSAGGFYSVYDIRGHRVGSDPDATVRDQLSRDPTQGD*
Ga0066903_1063837821	3300005764	Tropical Forest Soil	MTKLLATVSLAAGVAAVIASPALAQNAKHRQVRDPYAVSNPFSAYAAAPYSYQPVRPSARGSYSVYDIRGNRIGSDPDPDVRNQLARDPTQGD*
Ga0081455_100166866	3300005937	Tabebuia Heterophylla Rhizosphere	MRKLFATVSLVAGLVAVVASPALAQNAKHRQARDPYAASNPYASYAAPYGQVQRPSRGSYTVYDIRGRRVGADPDATVRDQLAHDPTQGD*
Ga0081455_100265795	3300005937	Tabebuia Heterophylla Rhizosphere	MKKLVATVSLAAGLTAVIASPALAQNGKHRHVARTPYAASSPFGAYAAAPYGSYRPMRPSARGSYSVYDTRGNRVGSDPDPTVRDQLARDPAQGD*
Ga0081540_11948732	3300005983	Tabebuia Heterophylla Rhizosphere	MKKLFTTVSLVAGLAAIASPALAAQNGTHRHSRDAYAASNPFAAYAAPYNNGYRAQRPSARGSNDVYDIRGRYVGSDPDPFIRDQLARDPGFDD*
Ga0066656_106925292	3300006034	Soil	LAAAVAAVIASPALAQNGKHRQPRDAYAASNPYGAFAAPYGSYRAQRPSARGYSVYDTRGHYVGSDPDPTVRSQLSHDPTQGD*
Ga0075425_1013189352	3300006854	Populus Rhizosphere	MKKLFTTVSVIAGLAAIIASPALAQNAKHRHQVRDSYAASNPFTAYAAAPYGSYQPVRPSARGSYSVYDIRGQRVGADPDATVRDQLARDPSQGD*
Ga0099827_103447083	3300009090	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGNRIGSDPDATVRDQLARDPTQGD*
Ga0066709_1005874142	3300009137	Grasslands Soil	MVHRIQKIVRCINAVYDHFPGRGWVQVKKRKTQMKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYPAAPYGSYRAVRPSAGGSYSVYDIRGNRVGSDPDATVRDQLAHDPTQGD*
Ga0099792_101042752	3300009143	Vadose Zone Soil	MNKLFATVSLAAGLAAVIASPALAQNGKHRQAREPYAASNPYGAYAAAPYDSYRPVRPSARGSYSVYDIRGHRVGADPDPTVRDQIAHDPTQGD*
Ga0114129_101961342	3300009147	Populus Rhizosphere	MKKLFATVSLVAGLAALIASPALAQNAKHRHVARAPYAASNPYNAYAAAPYGSYQPVRPSARGSYSVYDIRGNRVGADPDPTIRDQLARDPTQGD*
Ga0126374_103484451	3300009792	Tropical Forest Soil	LSLATAVAAVIASPALAQNGKHRQHRDPYAASSPYGAYAAPYGSYQAQRPSRGSYSVYDIRGHRVGSDPDATVRSQIAHDPTQSD*
Ga0126374_110220812	3300009792	Tropical Forest Soil	MRQVEKKETQMKKLFATMSLAAAVAAVIVSPALAQNGTHRHARDAYAASNPFAAYGSYRAQRPSARGSYSVYDTRGQYVGSDPDPTIRSQLAHDPGQGSD*
Ga0126382_104014102	3300010047	Tropical Forest Soil	MQDQERKTQMTKLLATVSLAAGVAAVIASPALAQSGKHRHQVRDPYAVSSPFSAYAAAPYRSYQPVRPSARGSYSVYDIRGNRIGADPDANVRDQLARDPTQGD*
Ga0126382_104538321	3300010047	Tropical Forest Soil	MKKLFATVSLVAGLVAVVASPALAQSGTHRQERNPYAASNPYAAYAAPYGQVQRPSRGSYSVYDIRGRRIGADPDATVRDQLAHDP
Ga0126382_110913081	3300010047	Tropical Forest Soil	MKKLFATMSLAAAVAAVIVSPALAQNGTHRHARDAYAASNPFAAYGSYRAQRPSARGSYSVYDTRGQYVGSDPDPTIRTQLAHDPGQGSD*
Ga0126382_114489102	3300010047	Tropical Forest Soil	MKKLFATLSLATAVAAVIASPALAQNGKHRQHRDPYAASSPYGAYAAPYGSYQAQRPSARGSYSVYDVRGQYVGSDPDPRIRDQL
Ga0126370_103797303	3300010358	Tropical Forest Soil	MRQVEKKETQMKKLFATMSLAAAVAAVIVSPALAQNGTHRHARDAYAASNPFAAYGSYRAQRPSARGSYSVYDTRGQYVGSDPDPTIRSQLAHDPGQGS
Ga0126376_100052876	3300010359	Tropical Forest Soil	MRQVEKKETQMKKLFATMSLAAAVAAVIVSPALAQNGTHRHARDAYAASNPFAAYGSYRAQRPSARGSYSVYDTRGQYVGSDPDPTIRSKLAHDPGQGSD*
Ga0126372_101067961	3300010360	Tropical Forest Soil	MVQVKKRKTQMTKLLTTVSLAASVAAVIASPALAQSGKHRHQVRDPYAVSNPFSSYAAAPYGSYRPVRPSARGSYTVYDIRGHRIGADPDPDVRNQLARDPSQGD*
Ga0126372_105237801	3300010360	Tropical Forest Soil	LFATLSLATAVAAVIASPALAQNGKHRQHRDPYAASSPYGAYAAPYGSYQAQRPSARGSYSVYDVRGQYVGSDPDPRIRDQLARDPGQGSGD*
Ga0126372_108383861	3300010360	Tropical Forest Soil	AVIASPALAQSGKHRHQVRDPYAVSNPFSSYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGADPDPDVRNQLARDPSQGD*
Ga0126372_123007461	3300010360	Tropical Forest Soil	MGQVEKKETQMKKLFATMSLAAAVAAVIASPALAQNGKHRQARDAYAVSNPYGAYAAPYGSYRAQRPSAGGYSVYDTRGHYVGSDPDPTVRSQLAHDPGQGVD*
Ga0126377_100282085	3300010362	Tropical Forest Soil	MKKLFATVSLVAGLVAVVASPALAQNAKHRQAREPYAASNPYAAYAAPYGQVQRPSRGSYSVYDIRGRRIGADPDATVRDQLAHDPTQGD*
Ga0126377_101097543	3300010362	Tropical Forest Soil	LEVEKKETQMKKLFATLSLAAAVAAVIASPALAQNGTHRQHRDPYAASNPYASYAAPYGSYQAQRPSARGSYSVYDVRGQYVGSDPDPRIRDQLARDPGQGSGD*
Ga0126377_101097544	3300010362	Tropical Forest Soil	MKKLVATMSLAAAVAAVIVSPALAQNGTHRHARDAYAASNPFAAYGSYRAQRPSARGSYSVYDTRGQYVGSDPDPTIRSQLAHDPGQGSD*
Ga0126377_108758672	3300010362	Tropical Forest Soil	MVQVKKRKTQMTKLLTTVSLAASVAAVIASPALAQSGKHRHQVRDPYAVSNPFSSYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGADPDPDVRNQLARDPSQGD*
Ga0126377_113046861	3300010362	Tropical Forest Soil	MKKLFATVSLVAGLAAIASPALAAQNGTHRHSRDAYAASNPFAAYAAPYNNGRSYQAQRPSARGSYDVYDIRGRYVGSDPDPFIRDQLARDPG
Ga0126377_126229712	3300010362	Tropical Forest Soil	LAAVIASPALAQNGTHRHSRDSYAASNPFAAYAAPYGSYRAQRPSARGSYSVYDTRGQYVGSDPDPTIRSQLAHDPGQGSD*
Ga0126377_132484081	3300010362	Tropical Forest Soil	ERKSQMTKLLAIVSLAAGLAAVITAPALAQNGKHRQVRDPYAVSSPFSAYAAAPYGSYRPVRPSARGSYSVYDIHGNRIGADPDPTVRSQLARDPSQGD*
Ga0126383_106902094	3300010398	Tropical Forest Soil	MKKLLATVSLAAGLAAVIASPALAQNGKHRVSRDPYAASNPYASYAAPYGDYRAQRPSTRGSTVYDIRGQRIGSDPDATVRDQLARDP
Ga0137383_113160441	3300012199	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLAHDPTQGD*
Ga0137363_107459151	3300012202	Vadose Zone Soil	MNKLLATVSLAAGLAAVIASPALAQNGKHRQVRDTYAASNPFSAYAAAPYGSYRPVRPSARGSYSVYDIRGHRVGADPDPTVRDQIAHDPTQGD*
Ga0137380_104261292	3300012206	Vadose Zone Soil	MVHRIQKIVRCINAVYDHLPGRGWVQVKKRKTQMKKLFATVSLAAGLAAVIASPALAQNGKHRHQVHHPYAASNPYGAYAAAPYGSYQPVRPSARGSYSVYDIRGNRVGSDPDATVRDQLAHDPTQGD*
Ga0137379_101832043	3300012209	Vadose Zone Soil	MVHRIQKIVRCINAVYDHLPGRGWVQVKKRKTQMKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPFGSYRAVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD*
Ga0150985_1113957732	3300012212	Avena Fatua Rhizosphere	MAHRIQKIVRCNSAVHDHFPGQGMVEVEKRKTQMKKLFTTVSVVAGLAAIIASPALAQNGKHRHQVRDTYAASNPFTAYAAAPYRGYQAVQPSRGSYTVYDIRGQRIGSDPDATVRDQLARDPSQGD*
Ga0150985_1187211741	3300012212	Avena Fatua Rhizosphere	MRKLLATMSLAAGVAAIIASPALAQNGKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATV
Ga0137387_101248113	3300012349	Vadose Zone Soil	MVHRIQKIVRCINAVYDHLPGRGWVQVKKRKTQMKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPYSSYRAVRPSAGGSYSVYDIRGNRVGSDPDATVRDQLAHDPTQGD*
Ga0137387_109689501	3300012349	Vadose Zone Soil	KKLCVALAQFTTHFPARGWVQVKKRKTQMKKLFATVSLAAGLAAVIASPALAQNGKHRQAREPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGRRVGADPDPTVRDQIARDPTQGD*
Ga0137386_105624511	3300012351	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPYGSYQPVRPSARGSYSVYDIRGHRVGSDPD
Ga0137386_111224891	3300012351	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPFGSYRAVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD*
Ga0137384_103673612	3300012357	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPFGSYRAVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPTQGD*
Ga0137375_100520283	3300012360	Vadose Zone Soil	MNKLFATVSLAAGLAAVIASPALAQNGKHRQAREPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGRRVGADPDPTVRDQIAHDPTQGD*
Ga0137360_106978962	3300012361	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHQVRHPYAASNPYGAYAAAPYGSYRPVRPSAPGSYSVYDIRGNRIGSDPDATVRDQLAHDPTQGD*
Ga0150984_1194456462	3300012469	Avena Fatua Rhizosphere	MRKLLATMSLAAGVAAIIASPALAQNGKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPD
Ga0150984_1231356992	3300012469	Avena Fatua Rhizosphere	EVEKRKTQMKKLFTTVSVVAGLAAIIASPALAQNGKHRHQVRDTYAASNPFTAYAAAPYRGYQAVQPSRGSYTVYDIRGQRIGSDPDATVRDQLARDPSQGD*
Ga0137358_106404961	3300012582	Vadose Zone Soil	MKKLVATVSLGLATVIASPALAQNGRHHHVVRAPYAAGSPFGAYAAAPYGSYRPVRPSARGSYSVYDIRGNRVGSDPDPTVRDQLARDPTQGD*
Ga0137397_100267256	3300012685	Vadose Zone Soil	MKETQMRKLLVTMSVAAGVAAIIASPALAQNGKHRQVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPSQGD*
Ga0137397_100446294	3300012685	Vadose Zone Soil	MKKETQMRKLLATMSLAAGVAAIVASPALAQNAKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLAHDPSQGD*
Ga0137394_101239022	3300012922	Vadose Zone Soil	MKKETQMRKLLVTMSLAAGVAAIVASPALAQNAKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD*
Ga0137413_106245251	3300012924	Vadose Zone Soil	MKKETQMRKLFATMSLAAGVAAIIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYGSYRPVRPSARGSYSVYDIRGHRVGADPDPTVRDQIAHDPTQGD*
Ga0137419_110791912	3300012925	Vadose Zone Soil	MKKETQMRKLFATMSLAAGVAAMIASPALAQNGKHRQAREPYAASNPYGAYAAAPYDSYRPVRPSARSSYSVYDIRGHRVGADPDPTVRDQIAHDPTQGD*
Ga0137416_103983441	3300012927	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLAHDPTQGD*
Ga0137416_104769692	3300012927	Vadose Zone Soil	MKKETQMRKLFATMSLAAGVAAIIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYGSYRPVRPSARGSYSVYDIRGHRVGADPDPTVRDQIARDPTQGD*
Ga0137404_100981793	3300012929	Vadose Zone Soil	MKKETQMRKLLVTMSLAAGVAAIVASPALAQNAKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD*
Ga0137404_109708452	3300012929	Vadose Zone Soil	MKKETQMRKLFATMSLAAGVAAIIASPALAQNGKHRQVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQ
Ga0137407_105469672	3300012930	Vadose Zone Soil	MKKLFATVSLAAGLAAIVASPALAQNGTHRHSRDPYAASNPFAAYAAPYNNGSSYRQAQRPSARGSNDVYDVRGHYVGSDPDPFIRSQLARDPGYDD*
Ga0137407_107889552	3300012930	Vadose Zone Soil	VASPALAQNAKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD*
Ga0137410_103001143	3300012944	Vadose Zone Soil	MTISQPGDGQVVMKKETQMRKLFATMSLAAGVAVMIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYGSYRPVRPSARGSYSVYDIRGHRVGADPDPTVRDQIARDPTQGD*
Ga0126369_106756321	3300012971	Tropical Forest Soil	AAVIASPALAQNGKHRHQVRDSYAVSNPFSAYAAAPYRSYQPVRPSARGSYNVYDIRGNRIGADPDPTIRDQLARDPSQGD*
Ga0126369_129253432	3300012971	Tropical Forest Soil	MKKLIATVSVAAGLAAIIASPALAHNAKHRHVRAPYAASNPYNAYAAAPYGSYRPVRRSAGGSYSVYDIRGNRIGSDPDATFRDQLAHDPTQGD*
Ga0126369_132783131	3300012971	Tropical Forest Soil	MKKLLTTVSVAAALAAVIASPALAQHTKHRHQVRDPYAASNPFTAYAAAPYGSYRPVRPSRGSYCVYDIRGHRVGSDPDATVRDQLSRDPTQGD*
Ga0137418_101296444	3300015241	Vadose Zone Soil	MKKETQMRKLFATMSLAAGVAAMIASPALAQNGKHRQAREPYAASNPYGAYAAAPYDSYRPVRPSARSSYSVYDIRGHRVGADPDPTVRDQIARDPTQGD*
Ga0137418_110362671	3300015241	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSD
Ga0137412_100165779	3300015242	Vadose Zone Soil	KRKTQMNKLFATVSLAAGLAAVIASPALAQNGKHRQAREPYAASNPYGAYAAAPYDSYRPVRPSARSSYSVYDIRGHRVGADPDPTVRDQIAHDPTQGD*
Ga0137412_102532342	3300015242	Vadose Zone Soil	MKKETQMRKLFATMSLAAGVAAIIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYGSYRPVRPSARGSYSVYDTRGNRVGSDPDPTVRDQLARDPTQGD*
Ga0184608_100177104	3300018028	Groundwater Sediment	MRKLLVTMSVAAGVAAIIASPALAQNAKHRQVRDPYAASNPYSAFAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPTQGD
Ga0184620_100249971	3300018051	Groundwater Sediment	MRKLLVTMSVAAGVAAIIASPALAQNAKHRQVRDPYAAGNPYSAFAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD
Ga0184621_100037082	3300018054	Groundwater Sediment	MRKLLATMSLAAGVAAIVASPALAQNAKHRQVRDPYAASNPYSAFAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD
Ga0184624_102353921	3300018073	Groundwater Sediment	MRKLLATMSLAAGVAAIIASPALAQNGKHRQVRDPYAASNPYGAFAAAPYGSYRPAQRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD
Ga0066655_106931551	3300018431	Grasslands Soil	MKKLLTTVSLAAAVAAVIASPALAQNGKHRQPRDAYAASDPYGAFAAPYGSYRAQRPSARGYSVYDTRGHYVGSDPDPTVRSQLSHDPTQGD
Ga0184645_10996241	3300019233	Groundwater Sediment	MRKLLVTMSVAAGVAAIIASPALAQNAKHRQVRDPYAASNPYSAFAAAPYGSYRPARPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD
Ga0137408_11049094	3300019789	Vadose Zone Soil	MRKLLVTMSLAAGVAAIVASPALAQNAKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD
Ga0193703_10307722	3300019876	Soil	MKKLLATVSLAAGVAAIIASPALAQNGKHRQVRDPYAVSNPFAAYAAAPYGSYRPAQRPSARGSYSVYDIRGNRIGSDPDATVRDQLAHDPSQGD
Ga0193727_11105201	3300019886	Soil	VASPALAQNAKHRQVRDPYAASNPYSAFAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD
Ga0179594_100076423	3300020170	Vadose Zone Soil	MRKLFATMSLAAGVAAIIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYGSYRPVRPSARGSYSVYDIRGHRVGADPDPTVRDQIARDPTQGD
Ga0179594_103589441	3300020170	Vadose Zone Soil	FATVSLAAGLAAVIASPALAQNGKHRHVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLAHDPTQGD
Ga0210378_102170432	3300021073	Groundwater Sediment	MKSLLATMTLAAGLAAVLASPALAQNGTYRQSRDPYAARDPSAAYAAQRGNASNYRPAQRTAPRQSYDVYDTRGHYVGSDPDPTIRDQ
Ga0222622_100306684	3300022756	Groundwater Sediment	MRQLLVTMSVAAGVAAIIASPALAQNAKHRQVRDPYAASNPYSAFAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD
Ga0179589_105614721	3300024288	Vadose Zone Soil	KLFATMSLAAGVAAIIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYGSYRPARPSARGSSSVYDIRGNRVGSDPDPIIRNQLARDPTQGD
Ga0209488_1000081820	3300027903	Vadose Zone Soil	MNKLFATVSLAAGLAAVIASPALAQNGKHRQAREPYAASNPYGAYAAAPYDSYRPVRPSARGSYSVYDIRGHRVGADPDPTVRDQIAHDPTQGD
Ga0137415_102255951	3300028536	Vadose Zone Soil	MKKLFATVSLAAGLAAVIASPALAQNGKHRHVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLAHDPTQGD
Ga0307306_101742341	3300028782	Soil	NSVVHDHFPGQGMVEVEKRKTQMKKLFTTVSVVAGLAAIIASPALAQNGKHRHQVRDTYAASNPFTAYAAAPYRGYQAVQPSRGSYTVYDIRGQRVGSDPDATVRDQLARDPSQGD
Ga0307299_103668031	3300028793	Soil	VIASPALAQNAKHRQVRDPYAASNPYSAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPSQGD
Ga0307278_103938931	3300028878	Soil	MRKLLATMSLAAGVAAIIASPALAQNAKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD
Ga0268253_102171041	3300030514	Agave	MKKLFTTVSVIAGLAAIIASPALAQNGKHRHQVRDTYAASNPFTAYAAAPYRGYQAVQPSRGSYTVYDIRGQRVGSDPDATVRDQLARDPSQGD
Ga0308203_10305232	3300030829	Soil	MKKLFATVSLVAGLAAVIASPALAQNGKHRQVRDTYAASNPFSAYAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD
Ga0308181_11324492	3300031099	Soil	MKKLFATVSLAAGVAAIMASPVLAQSGTHRQARDPFAAGNPYGAYAAAPYNNYRRAQRPSARGSYSVYDIRGHRVGSDPDPTVRDQIAHDPTQGD
Ga0307501_100063302	3300031152	Soil	MRTLFATMSLAAGVAAMIASPALAQNGKHRQVRDPYAASNPYGAYAAAPYGSYRPVRPSARGSYSVYDIRGHRIGSDPDATVRDQLARDPSQGD
Ga0307499_100515272	3300031184	Soil	MKKLFVTVSVAAGLAAIIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYRSYQSVRPSARGSYSVYDIRGHRVGSDPDAAVRDQLARDPSQGD
Ga0307500_100071634	3300031198	Soil	MKKLFVTVSVAAGLAAIIASPALAQNGKHRHQVRDPYAASNPFTAYAAAPYRSYQSVRPSARGSYNVYDIRGQRVGSDPDAAVRDQLARDPSQGD
Ga0307500_100619612	3300031198	Soil	MKKLLATVSLAAGVAAIIASPALAQNGRHRQVRDPYAVSNPFAAYAAAPYGSYRPAQRPSARGSYSVYDIRGNRIGSDPDATVRDQLAHDPSQGD
Ga0307468_1000222472	3300031740	Hardwood Forest Soil	MKKLFATVSLVAGLVAVVASPALAQNATHRQARSPYAASNPYAAYAAPYGQVQRPSRESYSVYDIRGRRIGADPDPTVRDQLAHDPTQGD
Ga0307470_102012432	3300032174	Hardwood Forest Soil	MVEVKKRNTQMKKLFTTVSVVAGLVAIIASPALAQNGKHRHQVRDTYAASNPFTSYAAAPYGSYQPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPSQGS
Ga0307470_102277282	3300032174	Hardwood Forest Soil	MKKLIATVSVAAGLAAVIASPALAQNGKHRQVRDPYAVSNPYGAYAAAPYDSYRPAQRPAARGSYGVYDIRGQRVGADPDPTIRDQIAHDPTQGD
Ga0307471_1035112041	3300032180	Hardwood Forest Soil	MKKLFAAVSLAAGVAAVIASPALAQNGKHRHQVRDPYAVSNPFSAYAAAPYRNYQPVRPSARGSYSVYDINGHRIGADPDPTVRD
Ga0307472_1006040502	3300032205	Hardwood Forest Soil	GLVAIIASPALAQNGKHRHQVRDTYAASNPFTSYAAAPYGSYQPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPSQGS
Ga0370546_035306_5_307	3300034681	Soil	MKKETQMRKLLATMSLAAGVAAIIASPALAQNAKHRQVRDPYAASNPYGAFAAAPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPTQGD
Ga0370546_059106_22_306	3300034681	Soil	MKKLFATVSLAAGLAAVIAAPALAQNGKHRQAREPYAASNPYNAYAATPYGSYRPVRPSARGSYSVYDIRGHRVGSDPDATVRDQLARDPSQGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090004

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences