NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F089562

Metagenome / Metatranscriptome Family F089562

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F089562
Family Type Metagenome / Metatranscriptome
Number of Sequences 109
Average Sequence Length 45 residues
Representative Sequence MSPKQRHIKSQSNTTYEEPYAIIERPTNATFIPTKTMETNEEKESV
Number of Associated Samples 90
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.85 %
% of genes near scaffold ends (potentially truncated) 74.31 %
% of genes from short scaffolds (< 2000 bps) 79.82 %
Associated GOLD sequencing projects 84
AlphaFold2 3D model prediction Yes
3D model pTM-score0.14

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Unclassified (73.394 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(21.101 % of family members)
Environment Ontology (ENVO) Unclassified
(70.642 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(89.908 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 0.00%    β-sheet: 0.00%    Coil/Unstructured: 100.00%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.14
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF00004AAA 6.42
PF08291Peptidase_M15_3 5.50
PF02274ADI 1.83
PF03721UDPG_MGDP_dh_N 0.92
PF01556DnaJ_C 0.92
PF03851UvdE 0.92
PF028262-Hacid_dh_C 0.92
PF01370Epimerase 0.92
PF01458SUFBD 0.92
PF00565SNase 0.92
PF01041DegT_DnrJ_EryC1 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG1834N-Dimethylarginine dimethylaminohydrolaseAmino acid transport and metabolism [E] 1.83
COG2235Arginine deiminaseAmino acid transport and metabolism [E] 1.83
COG4874Uncharacterized conserved proteinFunction unknown [S] 1.83
COG0240Glycerol-3-phosphate dehydrogenaseEnergy production and conversion [C] 0.92
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.92
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.92
COG0484DnaJ-class molecular chaperone with C-terminal Zn finger domainPosttranslational modification, protein turnover, chaperones [O] 0.92
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.92
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.92
COG0677UDP-N-acetyl-D-mannosaminuronate dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.92
COG0719Fe-S cluster assembly scaffold protein SufBPosttranslational modification, protein turnover, chaperones [O] 0.92
COG1004UDP-glucose 6-dehydrogenaseCell wall/membrane/envelope biogenesis [M] 0.92
COG1104Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS familyAmino acid transport and metabolism [E] 0.92
COG12503-hydroxyacyl-CoA dehydrogenaseLipid transport and metabolism [I] 0.92
COG1893Ketopantoate reductaseCoenzyme transport and metabolism [H] 0.92
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.92
COG4294UV DNA damage repair endonucleaseReplication, recombination and repair [L] 0.92


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A73.39 %
All OrganismsrootAll Organisms26.61 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000325|SI39nov09_100mDRAFT_1039678Not Available827Open in IMG/M
3300001344|JGI20152J14361_10012230All Organisms → Viruses → Predicted Viral3623Open in IMG/M
3300001419|JGI11705J14877_10007814Not Available4909Open in IMG/M
3300001419|JGI11705J14877_10019885All Organisms → Viruses → Predicted Viral2693Open in IMG/M
3300001450|JGI24006J15134_10001510Not Available13229Open in IMG/M
3300001450|JGI24006J15134_10103542Not Available1017Open in IMG/M
3300001460|JGI24003J15210_10016987Not Available2832Open in IMG/M
3300001460|JGI24003J15210_10020931Not Available2490Open in IMG/M
3300001460|JGI24003J15210_10037156All Organisms → cellular organisms → Bacteria1724Open in IMG/M
3300001472|JGI24004J15324_10005225Not Available4986Open in IMG/M
3300001472|JGI24004J15324_10105025All Organisms → cellular organisms → Bacteria718Open in IMG/M
3300002231|KVRMV2_100688390All Organisms → cellular organisms → Bacteria596Open in IMG/M
3300002483|JGI25132J35274_1005717All Organisms → Viruses → Predicted Viral3133Open in IMG/M
3300004110|Ga0008648_10080141Not Available917Open in IMG/M
3300005239|Ga0073579_1183699Not Available6941Open in IMG/M
3300005512|Ga0074648_1045114All Organisms → cellular organisms → Bacteria1987Open in IMG/M
3300005931|Ga0075119_1100844Not Available632Open in IMG/M
3300006025|Ga0075474_10119066Not Available843Open in IMG/M
3300006026|Ga0075478_10142733Not Available749Open in IMG/M
3300006802|Ga0070749_10096656All Organisms → Viruses → Predicted Viral1750Open in IMG/M
3300006802|Ga0070749_10661659Not Available560Open in IMG/M
3300006867|Ga0075476_10048044Not Available1734Open in IMG/M
3300006867|Ga0075476_10109293Not Available1058Open in IMG/M
3300006869|Ga0075477_10398742Not Available535Open in IMG/M
3300006874|Ga0075475_10256402Not Available732Open in IMG/M
3300006916|Ga0070750_10316971Not Available664Open in IMG/M
3300006919|Ga0070746_10093931All Organisms → Viruses → Predicted Viral1503Open in IMG/M
3300006928|Ga0098041_1159926Not Available724Open in IMG/M
3300006928|Ga0098041_1218634Not Available609Open in IMG/M
3300007963|Ga0110931_1172741Not Available647Open in IMG/M
3300008012|Ga0075480_10423359Not Available652Open in IMG/M
3300009071|Ga0115566_10130294All Organisms → Viruses → Predicted Viral1588Open in IMG/M
3300009193|Ga0115551_1017083Not Available3849Open in IMG/M
3300009193|Ga0115551_1271407Not Available746Open in IMG/M
3300009437|Ga0115556_1346696Not Available521Open in IMG/M
3300010149|Ga0098049_1195676Not Available620Open in IMG/M
3300010153|Ga0098059_1200958Not Available776Open in IMG/M
3300010318|Ga0136656_1316760Not Available505Open in IMG/M
3300010368|Ga0129324_10261306Not Available688Open in IMG/M
3300012936|Ga0163109_10756214Not Available711Open in IMG/M
3300012953|Ga0163179_10052907All Organisms → Viruses → Predicted Viral2803Open in IMG/M
3300012954|Ga0163111_12576022Not Available518Open in IMG/M
3300016797|Ga0182090_1787432Not Available2757Open in IMG/M
3300017708|Ga0181369_1006444Not Available3094Open in IMG/M
3300017713|Ga0181391_1125012Not Available575Open in IMG/M
3300017737|Ga0187218_1125972Not Available609Open in IMG/M
3300017739|Ga0181433_1030145All Organisms → cellular organisms → Bacteria1415Open in IMG/M
3300017741|Ga0181421_1009978Not Available2639Open in IMG/M
3300017743|Ga0181402_1071498All Organisms → cellular organisms → Bacteria915Open in IMG/M
3300017743|Ga0181402_1094361Not Available776Open in IMG/M
3300017743|Ga0181402_1129427Not Available644Open in IMG/M
3300017744|Ga0181397_1193312Not Available510Open in IMG/M
3300017750|Ga0181405_1140968Not Available598Open in IMG/M
3300017756|Ga0181382_1081427Not Available894Open in IMG/M
3300017758|Ga0181409_1030721All Organisms → Viruses → Predicted Viral1707Open in IMG/M
3300017765|Ga0181413_1076472Not Available1025Open in IMG/M
3300017767|Ga0181406_1075886Not Available1026Open in IMG/M
3300017770|Ga0187217_1072339All Organisms → cellular organisms → Bacteria1187Open in IMG/M
3300017776|Ga0181394_1154855Not Available711Open in IMG/M
3300017951|Ga0181577_10507680Not Available753Open in IMG/M
3300017958|Ga0181582_10188695All Organisms → cellular organisms → Bacteria1412Open in IMG/M
3300017958|Ga0181582_10685577Not Available618Open in IMG/M
3300018039|Ga0181579_10500871Not Available640Open in IMG/M
3300018039|Ga0181579_10577872Not Available583Open in IMG/M
3300018049|Ga0181572_10837341Not Available547Open in IMG/M
3300018415|Ga0181559_10469101All Organisms → cellular organisms → Bacteria686Open in IMG/M
3300018421|Ga0181592_10569226Not Available773Open in IMG/M
3300019459|Ga0181562_10324898All Organisms → cellular organisms → Bacteria759Open in IMG/M
3300020166|Ga0206128_1214528Not Available729Open in IMG/M
3300020280|Ga0211591_1113506Not Available563Open in IMG/M
3300020403|Ga0211532_10239961Not Available711Open in IMG/M
3300020411|Ga0211587_10425810Not Available536Open in IMG/M
3300020424|Ga0211620_10301364Not Available682Open in IMG/M
3300020428|Ga0211521_10133219All Organisms → cellular organisms → Bacteria1172Open in IMG/M
3300020430|Ga0211622_10246338Not Available765Open in IMG/M
3300020441|Ga0211695_10281555Not Available607Open in IMG/M
3300020461|Ga0211535_10393689Not Available628Open in IMG/M
3300020463|Ga0211676_10024286Not Available4733Open in IMG/M
3300020474|Ga0211547_10029266Not Available3046Open in IMG/M
3300021958|Ga0222718_10302306Not Available830Open in IMG/M
3300021959|Ga0222716_10242580All Organisms → Viruses → Predicted Viral1116Open in IMG/M
3300021959|Ga0222716_10612970Not Available592Open in IMG/M
3300021964|Ga0222719_10596678Not Available643Open in IMG/M
3300022867|Ga0222629_1039742Not Available727Open in IMG/M
(restricted) 3300022931|Ga0233433_10309445Not Available647Open in IMG/M
(restricted) 3300022933|Ga0233427_10298403Not Available676Open in IMG/M
3300022935|Ga0255780_10146805All Organisms → Viruses → Predicted Viral1295Open in IMG/M
3300023081|Ga0255764_10111110All Organisms → cellular organisms → Bacteria1496Open in IMG/M
3300023081|Ga0255764_10298254Not Available740Open in IMG/M
3300023172|Ga0255766_10288566Not Available842Open in IMG/M
3300023180|Ga0255768_10532221Not Available586Open in IMG/M
3300023245|Ga0222655_1062705Not Available535Open in IMG/M
3300024428|Ga0233396_1132533Not Available565Open in IMG/M
3300025120|Ga0209535_1005205Not Available8010Open in IMG/M
3300025120|Ga0209535_1082804Not Available1209Open in IMG/M
3300025120|Ga0209535_1166936All Organisms → cellular organisms → Bacteria668Open in IMG/M
3300025138|Ga0209634_1056756All Organisms → Viruses → Predicted Viral1902Open in IMG/M
3300025138|Ga0209634_1309715All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300025151|Ga0209645_1005451Not Available5528Open in IMG/M
3300025168|Ga0209337_1264449All Organisms → cellular organisms → Bacteria649Open in IMG/M
3300025816|Ga0209193_1094136Not Available755Open in IMG/M
3300025828|Ga0208547_1006514Not Available5614Open in IMG/M
3300025828|Ga0208547_1150472Not Available665Open in IMG/M
3300027791|Ga0209830_10381512All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300028418|Ga0228615_1101177Not Available789Open in IMG/M
3300029448|Ga0183755_1000547All Organisms → cellular organisms → Bacteria22781Open in IMG/M
3300032073|Ga0315315_10037789Not Available4487Open in IMG/M
3300032151|Ga0302127_10308714All Organisms → cellular organisms → Bacteria639Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine21.10%
Salt MarshEnvironmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh13.76%
SeawaterEnvironmental → Aquatic → Marine → Strait → Unclassified → Seawater13.76%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous11.93%
MarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Marine11.01%
Pelagic MarineEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine4.59%
Estuarine WaterEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water3.67%
Surface SeawaterEnvironmental → Aquatic → Marine → Oceanic → Photic Zone → Surface Seawater1.83%
SeawaterEnvironmental → Aquatic → Marine → Inlet → Unclassified → Seawater1.83%
SeawaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Seawater1.83%
Freshwater To Marine Saline GradientEnvironmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient1.83%
MarineEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine1.83%
Saline WaterEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water1.83%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Sediment → Saline Water And Sediment1.83%
SeawaterEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Seawater0.92%
MarineEnvironmental → Aquatic → Marine → Oceanic → Unclassified → Marine0.92%
SeawaterEnvironmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater0.92%
SeawaterEnvironmental → Aquatic → Marine → Pelagic → Unclassified → Seawater0.92%
Pelagic MarineEnvironmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine0.92%
Marine SedimentEnvironmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Marine Sediment0.92%
Saline LakeEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake0.92%
Saline Water And SedimentEnvironmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Epilimnion → Saline Water And Sediment0.92%

Visualization
Powered by ApexCharts



Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000325Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - 39 11/10/09 100mEnvironmentalOpen in IMG/M
3300001344Pelagic Microbial community sample from North Sea - COGITO 998_met_02EnvironmentalOpen in IMG/M
3300001419Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline water (15 m)EnvironmentalOpen in IMG/M
3300001450Marine viral communities from the Pacific Ocean - LP-53EnvironmentalOpen in IMG/M
3300001460Marine viral communities from the Pacific Ocean - LP-28EnvironmentalOpen in IMG/M
3300001472Marine viral communities from the Pacific Ocean - LP-32EnvironmentalOpen in IMG/M
3300002231Marine sediment microbial communities from Santorini caldera mats, Greece - red matEnvironmentalOpen in IMG/M
3300002483Marine viral communities from the Pacific Ocean - ETNP_6_30EnvironmentalOpen in IMG/M
3300004110Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - SI037_S2LV_100m_DNAEnvironmentalOpen in IMG/M
3300005239Environmental Genome Shotgun Sequencing: Ocean Microbial Populations from the Gulf of MaineEnvironmentalOpen in IMG/M
3300005512Saline surface water microbial communities from Etoliko Lagoon, Greece - halocline_waterEnvironmentalOpen in IMG/M
3300005931Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK9EnvironmentalOpen in IMG/M
3300006025Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006026Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_<0.8_DNAEnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300006867Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300006869Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNAEnvironmentalOpen in IMG/M
3300006874Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNAEnvironmentalOpen in IMG/M
3300006916Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24EnvironmentalOpen in IMG/M
3300006919Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21EnvironmentalOpen in IMG/M
3300006928Marine viral communities from the Subarctic Pacific Ocean - 8_ETSP_OMZ_AT15162 metaGEnvironmentalOpen in IMG/M
3300007963Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)EnvironmentalOpen in IMG/M
3300008012Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_<0.8_DNAEnvironmentalOpen in IMG/M
3300009071Pelagic marine microbial communities from North Sea - COGITO_mtgs_120405EnvironmentalOpen in IMG/M
3300009193Pelagic marine microbial communities from North Sea - COGITO_mtgs_110321EnvironmentalOpen in IMG/M
3300009437Pelagic marine microbial communities from North Sea - COGITO_mtgs_110414EnvironmentalOpen in IMG/M
3300010149Marine viral communities from the Subarctic Pacific Ocean - 13B_ETSP_OMZ_AT15268_CsCl metaGEnvironmentalOpen in IMG/M
3300010153Marine viral communities from the Subarctic Pacific Ocean - 20_ETSP_OMZ_AT15318 metaGEnvironmentalOpen in IMG/M
3300010318Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.8_DNAEnvironmentalOpen in IMG/M
3300010368Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNAEnvironmentalOpen in IMG/M
3300012936Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St13 metaGEnvironmentalOpen in IMG/M
3300012953Marine eukaryotic phytoplankton communities from the Atlantic Ocean - Atlantic ANT 2 MetagenomeEnvironmentalOpen in IMG/M
3300012954Marine microbial communities from the Costa Rica Dome - CRUD Field 142mm St18 metaGEnvironmentalOpen in IMG/M
3300016797Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 041408BS metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300017708Marine viral communities from the Subarctic Pacific Ocean - Lowphox_04 viral metaGEnvironmentalOpen in IMG/M
3300017713Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11EnvironmentalOpen in IMG/M
3300017737Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 14 SPOT_SRF_2010-08-11 (version 2)EnvironmentalOpen in IMG/M
3300017739Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 56 SPOT_SRF_2014-09-10EnvironmentalOpen in IMG/M
3300017741Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 44 SPOT_SRF_2013-06-19EnvironmentalOpen in IMG/M
3300017743Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17EnvironmentalOpen in IMG/M
3300017744Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23EnvironmentalOpen in IMG/M
3300017750Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 28 SPOT_SRF_2011-11-29EnvironmentalOpen in IMG/M
3300017756Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 5 SPOT_SRF_2009-10-22EnvironmentalOpen in IMG/M
3300017758Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 32 SPOT_SRF_2012-05-30EnvironmentalOpen in IMG/M
3300017765Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 36 SPOT_SRF_2012-09-28EnvironmentalOpen in IMG/M
3300017767Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 29 SPOT_SRF_2011-12-20EnvironmentalOpen in IMG/M
3300017770Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 15 SPOT_SRF_2010-09-15 (version 2)EnvironmentalOpen in IMG/M
3300017776Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23EnvironmentalOpen in IMG/M
3300017951Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300017958Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018039Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071402CT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018049Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018415Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011508AT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300018421Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300019459Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011511BT metaG (megahit assembly)EnvironmentalOpen in IMG/M
3300020166Pelagic subsurface seawater microbial communities from Kabeltonne, Helgoland, North Sea - Helgoland_Spring_Bloom_20160426_1EnvironmentalOpen in IMG/M
3300020280Marine microbial communities from Tara Oceans - TARA_B100001121 (ERX556044-ERR599114)EnvironmentalOpen in IMG/M
3300020403Marine microbial communities from Tara Oceans - TARA_B100000085 (ERX556015-ERR599145)EnvironmentalOpen in IMG/M
3300020411Marine microbial communities from Tara Oceans - TARA_B100000131 (ERX556098-ERR599130)EnvironmentalOpen in IMG/M
3300020424Marine microbial communities from Tara Oceans - TARA_B100000242 (ERX556056-ERR599138)EnvironmentalOpen in IMG/M
3300020428Marine microbial communities from Tara Oceans - TARA_E500000331 (ERX556032-ERR599094)EnvironmentalOpen in IMG/M
3300020430Marine microbial communities from Tara Oceans - TARA_B100000683 (ERX556126-ERR599160)EnvironmentalOpen in IMG/M
3300020441Marine prokaryotic communities collected during Tara Oceans survey from station TARA_078 - TARA_B100000524 (ERX556088-ERR599006)EnvironmentalOpen in IMG/M
3300020461Marine microbial communities from Tara Oceans - TARA_B100000401 (ERX556127-ERR599150)EnvironmentalOpen in IMG/M
3300020463Marine microbial communities from Tara Oceans - TARA_B100001057 (ERX555988-ERR599050)EnvironmentalOpen in IMG/M
3300020474Marine prokaryotic communities collected during Tara Oceans survey from station TARA_151 - TARA_B100001564 (ERX555957-ERR598976)EnvironmentalOpen in IMG/M
3300020475Marine microbial communities from Tara Oceans - TARA_B100002029 (ERX555951-ERR599001)EnvironmentalOpen in IMG/M
3300021958Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27DEnvironmentalOpen in IMG/M
3300021959Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13DEnvironmentalOpen in IMG/M
3300021964Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34DEnvironmentalOpen in IMG/M
3300022867Saline water microbial communities from Ace Lake, Antarctica - #1EnvironmentalOpen in IMG/M
3300022931 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_122_August2016_100_MGEnvironmentalOpen in IMG/M
3300022933 (restricted)Seawater microbial communities from Saanich Inlet, British Columbia, Canada - SI_118_April2016_100_MGEnvironmentalOpen in IMG/M
3300022935Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaGEnvironmentalOpen in IMG/M
3300023081Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaGEnvironmentalOpen in IMG/M
3300023172Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaGEnvironmentalOpen in IMG/M
3300023180Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaGEnvironmentalOpen in IMG/M
3300023245Saline water microbial communities from Ace Lake, Antarctica - #423EnvironmentalOpen in IMG/M
3300024428Seawater microbial communities from Monterey Bay, California, United States - 32DEnvironmentalOpen in IMG/M
3300025120Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)EnvironmentalOpen in IMG/M
3300025138Marine viral communities from the Pacific Ocean - LP-40 (SPAdes)EnvironmentalOpen in IMG/M
3300025151Marine viral communities from the Pacific Ocean - ETNP_6_30 (SPAdes)EnvironmentalOpen in IMG/M
3300025168Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)EnvironmentalOpen in IMG/M
3300025816Pelagic marine microbial communities from North Sea - COGITO_mtgs_100330 (SPAdes)EnvironmentalOpen in IMG/M
3300025828Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_<0.8_DNA (SPAdes)EnvironmentalOpen in IMG/M
3300027791Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_130 (SPAdes)EnvironmentalOpen in IMG/M
3300028418Seawater microbial communities from Monterey Bay, California, United States - 16DEnvironmentalOpen in IMG/M
3300029448Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082EnvironmentalOpen in IMG/M
3300032073Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 40m 3416EnvironmentalOpen in IMG/M
3300032151Marine microbial communities from Western Arctic Ocean, Canada - CB4_SCMEnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
SI39nov09_100mDRAFT_103967833300000325MarineMSRKQRHIKSQSTTTYEDPYVIIKRPTNATFIPTQIMETNAEETSVRQTCKLV
JGI20152J14361_1001223093300001344Pelagic MarineMSRKQRHIKSQSNTTYEEPYVIIKRPTNATFIPTQTMETNE
JGI11705J14877_10007814103300001419Saline Water And SedimentMSPTQRHIKSQSNTTYEEPYATISEPTTATIIPTQTVETNEEEACIRQA
JGI11705J14877_1001988563300001419Saline Water And SedimentMSPLQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVETNEEE
JGI24006J15134_10001510203300001450MarineMSRTQRHIRSQSNTTYEEPYVIIKRPTNATFIPTETMETNEEEKSVR*
JGI24006J15134_1010354233300001450MarineKFDLKYLYMSRKQRHIKTQSTTTYEDLYAIIKRPTNATFIPTETMETNEEETSV*
JGI24003J15210_1001698733300001460MarineMSRKQRHIKIQSITTYEEPYAFIKRPTNATFIPTETMETDEEKESV*
JGI24003J15210_1002093143300001460MarineMSPKQRHIKSQSNTTYEEPYAIIERPTNATFIPTKTMETNEEKESV*
JGI24003J15210_1003715633300001460MarineMSRTQRLIKSQSNIINEEPYANIKRPTNATFIPTKTVETNEETESV*
JGI24004J15324_10005225103300001472MarineMSPKQRHIKSQSNTTYEEPYAXIERPTNATFIPTKTXETNEEKESV*
JGI24004J15324_1010502513300001472MarineMSRKQRHIKTQSTTTYEDLYAIIKRPTNATFIPTETMETNEEETSV*
KVRMV2_10068839023300002231Marine SedimentMSRKQRHIKSQSITTYEEPYVIIEPTNATFISTQTMETNEEETCVQQASQLVPTK*
JGI25132J35274_100571763300002483MarineMSRKQRHIKSQQTTTYEEPYVNIERPTTATFIPTKTMEINEEKTCI*
Ga0008648_1008014113300004110MarineMSRTQRHIRSQSNTTYEEPYVIIKRPTNATFIPTQTMETNEE
Ga0073579_118369963300005239MarineMSQTQRHIKSQSTTTYEELYAIIKRPTNATFIPTETMETNEEKESV*
Ga0074648_104511443300005512Saline Water And SedimentMSPTQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVET
Ga0075119_110084423300005931Saline LakeMSQHQRHIQSNTFNHEEPYAISNPTTATFISTEIMETDEEKDCLRRE
Ga0075474_1011906633300006025AqueousMSPTQRHIKSQSNTTYEEPYATISEPTNATFIPEETVETNEEE
Ga0075478_1014273313300006026AqueousMSPQRHIKSKSTTTYEEPYVIIKRPTNATFIPTQTMETNEEETSVRQACEL
Ga0070749_1009665613300006802AqueousMSPLQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVETNEEEACIRQASQD
Ga0070749_1066165913300006802AqueousMSPLQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVETNEEEACIRQA
Ga0075476_1004804443300006867AqueousMSPTQRHIKSLSNTTYEEPYATISEPTTATIIPEETVETNEEEAC
Ga0075476_1010929333300006867AqueousMSPLQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVETNEEEACIRQASQ
Ga0075477_1039874223300006869AqueousMSPTQRHIKSLSNTTYEEPYATISEPTNATFIPEETVETNEEEACI
Ga0075475_1025640223300006874AqueousMSPTQRHIKSQSNTTYEEPYATISEPTNATFIPEETVETNEEEACI
Ga0070750_1031697113300006916AqueousMSPLQRHIKSQSNTTYEEPYATISEPTNATFIPEETVETNEEEACI
Ga0070746_1009393113300006919AqueousMSRQRHIKSKSITTYEEPYVIIKRPTNATFIPTETMETNEEETSVR
Ga0098041_115992623300006928MarineMSRKQRHIKSQSITTYEEPYAIIERPTNATFIPTETMETNEEE
Ga0098041_121863423300006928MarineMSRKQRHIKSQSITTYEEPYAIIERPTNATFIPTEIMETNEEETSVRQACELVH
Ga0110931_117274113300007963MarineMSRKQRHIKSQSNTTYEEPYVIIKRPTNATFIPTEIMETNEEETSVRQA
Ga0075480_1042335913300008012AqueousMSPTQRHIKSLSNTTYEEPYATISEPTNATFIPEETVETNEEEAC
Ga0115566_1013029413300009071Pelagic MarineMSPQRHIKSKSTTTYEEPYVIIKRPTNATFIPTQTMETNEEETSV
Ga0115551_101708333300009193Pelagic MarineMSRKQRHIKSQSNTTYEEPYVIIKRPTNATFIPTQTMETNEEETSVR*
Ga0115551_127140733300009193Pelagic MarineMSRQRHIRSKSTTTYEEPYVIIKRPTNASFIPTQTME
Ga0115556_134669613300009437Pelagic MarineMSPQRHIKSQSTTTYEEPYVIIKRPTNATFIPTQTMETNEEET
Ga0098049_119567623300010149MarineMSRKQRHIKSQSITTYEEPYAIIERPTNATFIPTETMETNEE
Ga0098059_120095833300010153MarineMSRKQRHIKSQSITTYEEPYAIIERPTNATFIPTETMETNEEETSVRQASE
Ga0136656_131676023300010318Freshwater To Marine Saline GradientMSPTQIHIKLLSNTTYEEPYATISEPTNATFIPEETVETNEEEACIRQAS
Ga0129324_1026130613300010368Freshwater To Marine Saline GradientMSPLQRHIKSQSNTTYEEPYATISEPTNATFIPEETVETNE
Ga0163109_1075621423300012936Surface SeawaterMSRQRHIKSKSITTYEEPYVIIKRPTNATFIPTQTMETNEEETSVRQAC
Ga0163179_1005290743300012953SeawaterMSHEQRHIKSQSNITYEDPYAISKPTNAAFISKKIMETNEEKKSVRQAS*
Ga0163111_1257602223300012954Surface SeawaterMSHKKRHIKKQSITTYEELYATIKRPTNATFIPTEIMETNEE
Ga0182090_178743263300016797Salt MarshMSPTQRHIKSLSNTTYEEPYATISEPTNATFIPEETVETN
Ga0181369_100644433300017708MarineMSRKQRHIKSQSNTTYEEPYAISERTNAAFISKETMETNEEKKSV
Ga0181391_112501213300017713SeawaterMSRQRHIKAQSTTTYEEPYVIIKRPTNATFIPTQTMETN
Ga0187218_112597213300017737SeawaterMSRQRHIKAQSTTTYEEPYVIIKRPTNATFIPTQTMETNEEETSVRQTCE
Ga0181433_103014533300017739SeawaterMSQKLRHIKSQSNTTYEEPYANIKRPTNATFIPKETMETNEEKESV
Ga0181421_100997863300017741SeawaterMSRKLRHIKSQSNITYEEPYANIKRPTNATFIPKETMETNEEKESV
Ga0181402_107149833300017743SeawaterMSRTQRLIKSQSNIINEEPYANIKRPTNATFIPTETMETNEEKESV
Ga0181402_109436133300017743SeawaterMSPKTRHIKSLTNITYEEPYAIIQEPTNATFISEKTMETN
Ga0181402_112942713300017743SeawaterMSHRHRHIKSQSNTTYEEPYVIIKRPTNATFIPTQTMETNEEE
Ga0181397_119331223300017744SeawaterMSRKQRHIKSQSNTTYEEPYVIIKRPTNATFIPTQTMETNEEETSVRQ
Ga0181405_114096813300017750SeawaterMSRQRHIISQSTTTYEEPYAIIKRPTNATFIPTEIMETNEEETSVRQTCEL
Ga0181382_108142723300017756SeawaterMSPRQRHIKTQSNTTYEELYAISEPTTATFISEEIMETTEEKESV
Ga0181409_103072143300017758SeawaterMSRQRHIKSKSTTTYEEPYVIIERPTNATFIPAKIMETNEEET
Ga0181413_107647213300017765SeawaterMSQTQRLIKSQSNIINEEPYANIKRPTNATFIPTKTVETNEETESV
Ga0181406_107588613300017767SeawaterSQSNIINEEPYANIKRPTNATFIPTKTVETNEETESV
Ga0187217_107233913300017770SeawaterMSRQRHIKSKSTTTYEETYVIIKRPTNATFIPTQIMEINE
Ga0181394_115485513300017776SeawaterMSRQRHIKSKSTTTYEEPYVIIKRPTNATFIPTETMETNEE
Ga0181577_1050768023300017951Salt MarshMSLHQRHIKSQSTINYEEPYAIIERPTNATFIPKETMETNEEKKSV
Ga0181582_1018869533300017958Salt MarshMSPTQRHIKSQSNTTYEEPYATISEPTTATIIPEETVETNEE
Ga0181582_1068557723300017958Salt MarshMSPLQRHIKSQSNTTYEEPYATISEPTTATIIPEETVETNEEEACI
Ga0181579_1050087113300018039Salt MarshMSPTQRHIKSQSNTTYEEPYATISEPTTATIIPEETVETNEEEAC
Ga0181579_1057787223300018039Salt MarshMSPLQRHIKSQSNTTYEEPYATISEPTTATIIPEETVETNEEEACIR
Ga0181572_1083734123300018049Salt MarshMSRKQRHIKSQSNINYEEPYVIIKRPTNATFIPKKTMERDEEK
Ga0181559_1046910123300018415Salt MarshMSRKQRHIKSQSNTTHEEPYAISERTNAAFISKEIMETNEEKKSV
Ga0181592_1056922633300018421Salt MarshMSPLQRHIKSQSNTIYEEPYATISEPTTATTVPTQTVETNEEEAC
Ga0181562_1032489813300019459Salt MarshSKYLYMSRKQRHIKSQSNTTHEEPYAISERTNAAFISKEIMETNEEKKSV
Ga0206128_121452813300020166SeawaterMSQTQRHIKPQSTTTCEEPYATIKRPTNATFIPTEIMETNEEKKSVRQA
Ga0211591_111350623300020280MarineMSRQRHIKSKSTTTYEEPYVIIKRPTNATFIPTQIMETNE
Ga0211532_1023996123300020403MarineMIPNQNRIKKQSNIHLQEPYAISKPTTATIIPTKTMETNEEKKSL
Ga0211587_1042581013300020411MarineMSRQRHIKSQPTTNHEEPYVIIKRATNATFISTQTMEINEEEKSVRQKSKIVYA
Ga0211620_1030136423300020424MarineMSRTYRHIKSQSNTINEGSYAILQQPTNAAFIPKKTME
Ga0211521_1013321923300020428MarineMSQTQRHIKPQSTTTYEEPYATIKRPTNATFIPTETMETDEEKESV
Ga0211622_1024633833300020430MarineMSPIQRHIKSQHNITYEEPYAIIQKPTDASFISKETME
Ga0211695_1028155513300020441MarineMSRKQRHIKSQSTTTYEEPYAIIERPTNATFIPTETMETNEEKKSVRQASELVS
Ga0211535_1039368913300020461MarineMSRQRHIKSQPTTNHEEPYVIIKRATNATFISTQTMEI
Ga0211676_1002428683300020463MarineMSHKKRHIKKQSITTYEELYATIKRPTNATFIPTEIMETNEEKTGVRQTCALVLAK
Ga0211547_1002926613300020474MarineMSRKQRLKKSQQNIINEEPYASVQKPTNAAFIPKETMEGNAEKK
Ga0211541_1026175723300020475MarineMSHEQRHIKSQSNITYEDPYAISKPTNAAFISKKIMETNEEKKSVRQAS
Ga0222718_1030230633300021958Estuarine WaterMSPLQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVETN
Ga0222716_1024258013300021959Estuarine WaterMSPQRHIKTQSTTTYEEPYVIIERPTNATFIPTQTMETNEEETSV
Ga0222716_1061297013300021959Estuarine WaterMSPTQRHITSLSNTTYEEPYATISEPTNATFIPEETVETNEEE
Ga0222719_1059667813300021964Estuarine WaterMSPLQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVETNEEEAC
Ga0222629_103974223300022867Saline WaterMSHKQRHIKSQSITTYEEPYVISKPTTAAFISEKIMETNEEKDCVRQ
(restricted) Ga0233433_1030944513300022931SeawaterMSRQRHIKSKSTTTYEEPYVIIKRPTNATFIPTETMETNEEEKSVRQASEFVP
(restricted) Ga0233427_1029840323300022933SeawaterMSRTQRHIRSQSNTTYEEPYVIIKRPTNATFIPTETMETNE
Ga0255780_1014680513300022935Salt MarshMSPLQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVET
Ga0255764_1011111043300023081Salt MarshMSPTQRHIKSQSNTTYEEPYATISEPTTATIIPEETVETNE
Ga0255764_1029825423300023081Salt MarshMSPFQRHIKSQSNTTYEEPYATISEPTTATTVPTQTVETNEEEACI
Ga0255766_1028856633300023172Salt MarshMSPLQRHIKSQSNTTYEEPYATISEPTTATIIPEETVETNEEEACIRQ
Ga0255768_1053222113300023180Salt MarshMSPLQRHIKSQSNTIYEEPYATISEPTTATTVPTQTVETNEEEA
Ga0222655_106270513300023245Saline WaterMSQHQRHIQSNTFNHEEPYAISNPTTATFISTEIMETDEEKDCLRRESE
Ga0233396_113253323300024428SeawaterMSRQRHIKSKSTTTYEEPYVIIKRPTNATFIPTETMETNEEKTSVRQTCELVH
Ga0209535_100520593300025120MarineMSRKQRHIKTQSTTTYEDLYAIIKRPTNATFIPTETMETNEEETSV
Ga0209535_108280433300025120MarineMSQKQRHIKLQLNTTYEEPYAISEPTTATFISEEIMETTEEKESV
Ga0209535_116693623300025120MarineMSRKQRHIKSQSNITYEDPYAIIKQPTNATFIPTETMETNEEKESV
Ga0209634_105675653300025138MarineSPKQRHIKSQSNTTYEEPYAIIERPTNATFIPTKTMETNEEKESV
Ga0209634_130971523300025138MarineMSRTQRLIKSQSNIINEEPYANIKRPTNATFIPTKTVETNEETESV
Ga0209645_100545163300025151MarineMSRKQRHIKSQQTTTYEEPYVNIERPTTATFIPTKTMEINEEKTCI
Ga0209337_126444913300025168MarineHIKSQSNTTYEEPYAIIERPTNATFIPTKTMETNEEK
Ga0209193_109413633300025816Pelagic MarineMSQTQRHIKSQSTTTYEEPYANIKRPTNATFIPTEIMETNEEKKS
Ga0208547_100651413300025828AqueousMSPTQRHIKSQSNTTYEEPYATISEPTNATFIPEET
Ga0208547_115047213300025828AqueousMSPTQRHIKSLSNTTYEEPYATISEPTTATIIPEETVETNEEEA
Ga0209830_1038151223300027791MarineMSRTQRLIKSQSNTINEEPYAIIKQPTNATFISTKTVETDEETESV
Ga0228615_110117713300028418SeawaterMSPIQRHSKSQCNTNYEELYAIISEPTNATIIPEKAME
Ga0183755_1000547323300029448MarineMSRKHRHIKIQSITTYEEPYATIKRPTNATFIPTETMETDEEKESV
Ga0315315_1003778933300032073SeawaterMSRKLRHIKSQSNTTYEEPYANIKRPTNATFIPKETMETNEEKESV
Ga0302127_1030871433300032151MarineSNTINEEPYAIIKQPTNATFISTKTVETDEETESV


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.