Metagenome / Metatranscriptome Family F089461

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089461
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	44 residues
Representative Sequence	SWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW
Number of Associated Samples	95
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	97.25 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (30.275 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.872 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 23.94% Coil/Unstructured: 76.06%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF12544	LAM_C	51.38
PF04055	Radical_SAM	17.43
PF02776	TPP_enzyme_N	4.59
PF02146	SIR2	0.92
PF01551	Peptidase_M23	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0846	NAD-dependent protein deacetylase, SIR2 family	Posttranslational modification, protein turnover, chaperones [O]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.41 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	53.21 %
Unclassified	root	N/A	4.59 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.04 %
Unclassified	root	N/A	4.59 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	18.35 %
Unclassified	root	N/A	4.59 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	11.01 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	6.42 %
Unclassified	root	N/A	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.92 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	11.01 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	6.42 %
Unclassified	root	N/A	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	10.09 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples	6.42 %
Unclassified	root	N/A	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	10.09 %
uncultured Microvirga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	6.42 %
Unclassified	root	N/A	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Archangium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium	0.92 %

Name	Rank	Taxonomy	Distribution
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	10.09 %
uncultured Microvirga sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	6.42 %
Unclassified	root	N/A	4.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Archangium violaceum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003911\|JGI25405J52794_10094961	All Organisms → cellular organisms → Bacteria → Proteobacteria	662	Open in IMG/M
3300004480\|Ga0062592_100908260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	794	Open in IMG/M
3300005147\|Ga0066821_1010468	All Organisms → cellular organisms → Bacteria	667	Open in IMG/M
3300005165\|Ga0066869_10104290	All Organisms → cellular organisms → Bacteria → Proteobacteria	571	Open in IMG/M
3300005332\|Ga0066388_103447717	All Organisms → cellular organisms → Bacteria → Proteobacteria	807	Open in IMG/M
3300005332\|Ga0066388_107732780	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300005356\|Ga0070674_102103890	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	515	Open in IMG/M
3300005363\|Ga0008090_10175721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	843	Open in IMG/M
3300005363\|Ga0008090_10208770	All Organisms → cellular organisms → Bacteria	541	Open in IMG/M
3300005440\|Ga0070705_100254817	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300005713\|Ga0066905_102274627	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300005764\|Ga0066903_107117675	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	579	Open in IMG/M
3300005764\|Ga0066903_107496942	All Organisms → cellular organisms → Bacteria	563	Open in IMG/M
3300005764\|Ga0066903_109120511	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005842\|Ga0068858_101635076	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300006048\|Ga0075363_100997699	All Organisms → cellular organisms → Bacteria → Proteobacteria	516	Open in IMG/M
3300006163\|Ga0070715_10366124	All Organisms → cellular organisms → Bacteria → Proteobacteria	791	Open in IMG/M
3300006175\|Ga0070712_100490606	All Organisms → cellular organisms → Bacteria → Proteobacteria	1028	Open in IMG/M
3300006604\|Ga0074060_12002991	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300006845\|Ga0075421_101460237	All Organisms → cellular organisms → Bacteria → Proteobacteria	750	Open in IMG/M
3300006914\|Ga0075436_100407613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	986	Open in IMG/M
3300009090\|Ga0099827_10203770	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300010046\|Ga0126384_10872091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	811	Open in IMG/M
3300010046\|Ga0126384_11373883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	658	Open in IMG/M
3300010047\|Ga0126382_11482292	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Archangium → Archangium violaceum	623	Open in IMG/M
3300010360\|Ga0126372_10370940	All Organisms → cellular organisms → Bacteria	1293	Open in IMG/M
3300010362\|Ga0126377_11190837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	832	Open in IMG/M
3300010362\|Ga0126377_11496066	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300010366\|Ga0126379_10416471	All Organisms → cellular organisms → Bacteria	1396	Open in IMG/M
3300010376\|Ga0126381_100580801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1592	Open in IMG/M
3300010376\|Ga0126381_103561800	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	611	Open in IMG/M
3300010376\|Ga0126381_104426155	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	543	Open in IMG/M
3300010376\|Ga0126381_104677505	All Organisms → cellular organisms → Bacteria	527	Open in IMG/M
3300010398\|Ga0126383_13153741	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010401\|Ga0134121_10256561	All Organisms → cellular organisms → Bacteria	1532	Open in IMG/M
3300012211\|Ga0137377_10328393	All Organisms → cellular organisms → Bacteria	1465	Open in IMG/M
3300012354\|Ga0137366_10077038	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2537	Open in IMG/M
3300012354\|Ga0137366_10320378	All Organisms → cellular organisms → Bacteria	1138	Open in IMG/M
3300012917\|Ga0137395_11236626	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300012960\|Ga0164301_11238325	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300012971\|Ga0126369_10589228	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300015077\|Ga0173483_10155323	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1014	Open in IMG/M
3300015359\|Ga0134085_10593247	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300015371\|Ga0132258_11812173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1538	Open in IMG/M
3300016270\|Ga0182036_11592091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	550	Open in IMG/M
3300016270\|Ga0182036_11746796	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → environmental samples → uncultured Microvirga sp.	526	Open in IMG/M
3300016319\|Ga0182033_11921090	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300016445\|Ga0182038_12191353	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300018061\|Ga0184619_10521829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	522	Open in IMG/M
3300018074\|Ga0184640_10371479	Not Available	647	Open in IMG/M
3300018083\|Ga0184628_10048425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2142	Open in IMG/M
3300018481\|Ga0190271_11241354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	867	Open in IMG/M
3300021078\|Ga0210381_10304105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	576	Open in IMG/M
3300021080\|Ga0210382_10138743	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300021168\|Ga0210406_11255130	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300021560\|Ga0126371_12177617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	669	Open in IMG/M
3300022756\|Ga0222622_10253372	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300025923\|Ga0207681_10136351	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1822	Open in IMG/M
3300025937\|Ga0207669_10976760	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	711	Open in IMG/M
3300025960\|Ga0207651_11322493	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300026088\|Ga0207641_10005658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	10639	Open in IMG/M
3300026121\|Ga0207683_10115259	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2409	Open in IMG/M
3300026550\|Ga0209474_10412895	Not Available	698	Open in IMG/M
3300026557\|Ga0179587_10990286	All Organisms → cellular organisms → Bacteria	554	Open in IMG/M
3300027654\|Ga0209799_1026262	All Organisms → cellular organisms → Bacteria	1286	Open in IMG/M
3300027748\|Ga0209689_1005258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	9263	Open in IMG/M
3300027880\|Ga0209481_10470865	All Organisms → cellular organisms → Bacteria	647	Open in IMG/M
3300028705\|Ga0307276_10078752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	772	Open in IMG/M
3300028707\|Ga0307291_1066525	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	879	Open in IMG/M
3300028720\|Ga0307317_10027630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1759	Open in IMG/M
3300028722\|Ga0307319_10054465	All Organisms → cellular organisms → Bacteria	1258	Open in IMG/M
3300028824\|Ga0307310_10503048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300031231\|Ga0170824_115819062	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300031474\|Ga0170818_100890561	All Organisms → cellular organisms → Bacteria	621	Open in IMG/M
3300031544\|Ga0318534_10425826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	761	Open in IMG/M
3300031544\|Ga0318534_10716960	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031549\|Ga0318571_10356127	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300031561\|Ga0318528_10032915	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	2558	Open in IMG/M
3300031640\|Ga0318555_10496544	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	661	Open in IMG/M
3300031682\|Ga0318560_10512160	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	650	Open in IMG/M
3300031719\|Ga0306917_10135163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1813	Open in IMG/M
3300031720\|Ga0307469_11772730	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300031724\|Ga0318500_10045461	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1840	Open in IMG/M
3300031744\|Ga0306918_11051195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300031765\|Ga0318554_10517842	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	674	Open in IMG/M
3300031769\|Ga0318526_10043676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1688	Open in IMG/M
3300031781\|Ga0318547_10002871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	6808	Open in IMG/M
3300031792\|Ga0318529_10151020	All Organisms → cellular organisms → Bacteria	1068	Open in IMG/M
3300031793\|Ga0318548_10436337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	641	Open in IMG/M
3300031821\|Ga0318567_10899195	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031879\|Ga0306919_10481180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	956	Open in IMG/M
3300031879\|Ga0306919_10972417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	649	Open in IMG/M
3300031890\|Ga0306925_10771093	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1000	Open in IMG/M
3300031894\|Ga0318522_10404331	All Organisms → cellular organisms → Bacteria	517	Open in IMG/M
3300031897\|Ga0318520_11092399	All Organisms → cellular organisms → Bacteria	505	Open in IMG/M
3300031946\|Ga0310910_10819175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	732	Open in IMG/M
3300031947\|Ga0310909_11516198	All Organisms → cellular organisms → Bacteria	533	Open in IMG/M
3300032051\|Ga0318532_10303741	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300032052\|Ga0318506_10277629	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300032055\|Ga0318575_10140962	All Organisms → cellular organisms → Bacteria	1193	Open in IMG/M
3300032063\|Ga0318504_10062422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1597	Open in IMG/M
3300032089\|Ga0318525_10125543	All Organisms → cellular organisms → Bacteria	1313	Open in IMG/M
3300032090\|Ga0318518_10257425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	895	Open in IMG/M
3300033290\|Ga0318519_10080264	All Organisms → cellular organisms → Bacteria	1715	Open in IMG/M
3300033433\|Ga0326726_12326519	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300033551\|Ga0247830_11108756	All Organisms → cellular organisms → Bacteria	632	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.07%
Host-Associated	Host-Associated	11.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	82.57%
Plants	Host-Associated → Plants	11.93%
Aquatic	Environmental → Aquatic	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.65%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.42%
Rhizoplane	Host-Associated → Plants → Rhizoplane	4.59%
Sediment	Environmental → Aquatic → Sediment	3.67%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Peat	Environmental → Terrestrial → Peat	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.56%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.67%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.92%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.95%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	32.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.94%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	13.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	6.42%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.83%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.92%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005165	Soil and rhizosphere microbial communities from Laval, Canada - mgHMC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006604	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014307	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_CattailNLA_D1	Environmental	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015359	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09182015	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018061	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_b1	Environmental	Open in IMG/M
3300018074	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b2	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025960	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026121	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027654	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027748	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028707	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_148	Environmental	Open in IMG/M
3300028720	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_357	Environmental	Open in IMG/M
3300028722	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368	Environmental	Open in IMG/M
3300028793	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300033551	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI25405J52794_100949612	3300003911	Tabebuia Heterophylla Rhizosphere	TPACFSWAAGERIRLIAGDWNGRCIGAIFYNYARRTRCETWCGW*
Ga0062592_1009082601	3300004480	Soil	WAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMSCGGSRW*
Ga0066821_10104682	3300005147	Soil	FVGRTPACWSWAAGEPIRLLAGDWNGRCDYAVFYNFYRRSTCEMSCGGSRW*
Ga0066869_101042902	3300005165	Soil	TPACFSWAAGERIRLISGDWNGRCVAALFYNFYRRNTCEVWCGGGGWW*
Ga0066388_1034477172	3300005332	Tropical Forest Soil	GWAPGERIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGGWW*
Ga0066388_1077327802	3300005332	Tropical Forest Soil	FSWAAGERIRLIAGDWNGRCVAARFYNFYRRDTCDVWCGSGGWW*
Ga0070674_1021038902	3300005356	Miscanthus Rhizosphere	RTPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW*
Ga0008090_101757212	3300005363	Tropical Rainforest Soil	AGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0008090_102087701	3300005363	Tropical Rainforest Soil	AGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW*
Ga0070705_1002548172	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	CWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW*
Ga0066905_1022746271	3300005713	Tropical Forest Soil	ACFSWAAGERIRLIAGDWNGRCIGAIFYNYARRNRCETWCGW*
Ga0066903_1071176752	3300005764	Tropical Forest Soil	AGERIRLLAGDWNGRCVAARFYNFYRRNTCDMWCGGGGW*
Ga0066903_1074969422	3300005764	Tropical Forest Soil	SGKTPACLSWAAGEQITLVAGDWHGRCVDAVFYNYPRRSTCEVSCGWGRY*
Ga0066903_1091205112	3300005764	Tropical Forest Soil	SCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0068858_1016350761	3300005842	Switchgrass Rhizosphere	CWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW*
Ga0075363_1009976991	3300006048	Populus Endosphere	TPACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCQMLCGGSRW*
Ga0070715_103661242	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	FGWVAGERITLVAGDWNARCVVAVFYNFYRRNTCEMWCGGSGWW*
Ga0070712_1004906061	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	CFGWVAGERITLVAGDWNARCVVAVFYNFYRRNTCEVWCGGGWW*
Ga0074060_120029912	3300006604	Soil	WAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEVWCGGGGWW*
Ga0075421_1014602372	3300006845	Populus Rhizosphere	CLHWAAGERIRLIAGDWNGRCVGAIFYNYARRNRCEMWCGW*
Ga0075436_1004076131	3300006914	Populus Rhizosphere	IRLIAGDWNGRCVAARFYNFYRRNTCEVSCGGGGWW*
Ga0099827_102037701	3300009090	Vadose Zone Soil	RRFTAKTPACMRWAAGERIRLIAGDWNGRCVDAVFYNYFWRGTCEMWCGW*
Ga0126384_108720913	3300010046	Tropical Forest Soil	GERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW*
Ga0126384_113738831	3300010046	Tropical Forest Soil	RIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGWWW*
Ga0126382_114822922	3300010047	Tropical Forest Soil	FTGWAPACFRWVAGERIRLIAGDWNGRCIGAIFYNYARRNRCEMWCGW*
Ga0126372_103709402	3300010360	Tropical Forest Soil	RIRLIAGDWNGRCVAARFYNFYRRNTCDVSCGSGGWWW*
Ga0126377_111503162	3300010362	Tropical Forest Soil	RITLIAGDWHGRCDAAVFYNYARHNTCEVSCGGGWW*
Ga0126377_111908371	3300010362	Tropical Forest Soil	MRWAAGEPIRLIAGDWNGRCVDAIFYNYFWRSTCEMSCGRSWWY*
Ga0126377_114960662	3300010362	Tropical Forest Soil	ARTPACLGWAPGERIRLIAGDWNGRCVTAVFYNFYRRSTCEMWCGGGWW*
Ga0126379_104164713	3300010366	Tropical Forest Soil	IRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGWWW*
Ga0126381_1005808013	3300010376	Tropical Forest Soil	TPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW*
Ga0126381_1035618002	3300010376	Tropical Forest Soil	GWAAGERIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGGWWW*
Ga0126381_1044261551	3300010376	Tropical Forest Soil	TPACFSWAAGERIRLIAGDWNGRCVAAVFYNFYRRSTCEMWCGGSWWW*
Ga0126381_1046775052	3300010376	Tropical Forest Soil	FSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0126383_131537412	3300010398	Tropical Forest Soil	FSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW*
Ga0134121_102565612	3300010401	Terrestrial Soil	TPACWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW*
Ga0137377_103283931	3300012211	Vadose Zone Soil	CFAWAAGERIRLLAGDWNGRCVVALFYNFYRRNTCEMWCGGGWW*
Ga0137366_100770383	3300012354	Vadose Zone Soil	GERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGCWW*
Ga0137366_103203782	3300012354	Vadose Zone Soil	CFGWAAGERIRLLAGDWNARCAVAVFYNFYRRNTCEMWCGSGWWW*
Ga0137395_112366261	3300012917	Vadose Zone Soil	ERIRLLAGDWNGRCVVALFYNFYRRNTCEMWCGGGWW*
Ga0164301_112383251	3300012960	Soil	RITLVAGDWNARCAVAVFYNFYRRNTCEMWCGGGGWW*
Ga0126369_105892281	3300012971	Tropical Forest Soil	ARTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW*
Ga0075304_10352682	3300014307	Natural And Restored Wetlands	GEQIKLIEGDWNGRCVEAVFYNVWRRSTCVTVCEGNGWRWW*
Ga0173483_101553231	3300015077	Soil	ERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW*
Ga0134085_105932471	3300015359	Grasslands Soil	RSPSCFGWAAGERIRLLAGDWNARCAVAVFYNFYRRNTCEMLCGSGWWW*
Ga0132258_118121733	3300015371	Arabidopsis Rhizosphere	WSWAAGERIKLLAGDWNARCDYAAFYNFYRRSTCEMWCGGSRW*
Ga0182036_115920912	3300016270	Soil	TPACFSWAAGERIRLIAGDWNGRCVAALFYNFYRRNTCEVWCGGGGWW
Ga0182036_117467961	3300016270	Soil	ARTPACFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0182033_119210902	3300016319	Soil	SWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0182038_121913531	3300016445	Soil	ACFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDMWCGGGGWW
Ga0184619_105218291	3300018061	Groundwater Sediment	TGKSRACFNWAAGERIKLIAGDWNARCTEAVFYNFYRRSTCEMWCRPW
Ga0184640_103714791	3300018074	Groundwater Sediment	FVGRSPACWSWAAGERIKLLAGNWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0184628_100484251	3300018083	Groundwater Sediment	SWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW
Ga0190271_112413541	3300018481	Soil	ACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW
Ga0210381_103041051	3300021078	Groundwater Sediment	ACWSWAAGEAIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0210382_101387432	3300021080	Groundwater Sediment	RIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0210406_112551301	3300021168	Soil	ERITLVAGDWNARCVVAVFYNFYRRNTCEMWCGGGGWW
Ga0126371_121776172	3300021560	Tropical Forest Soil	SWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEMWCGGGGWW
Ga0222622_102533721	3300022756	Groundwater Sediment	GERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0207681_101363513	3300025923	Switchgrass Rhizosphere	RTPACWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMLCGGSRW
Ga0207669_109767601	3300025937	Miscanthus Rhizosphere	TPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0207651_113224932	3300025960	Switchgrass Rhizosphere	ACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCQMLCGGSRW
Ga0207641_100056581	3300026088	Switchgrass Rhizosphere	AAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW
Ga0207683_101152591	3300026121	Miscanthus Rhizosphere	TPACWSWAAGERIKLLAGDWNGRCAYAVFYNFYRRSTCEMSCGGSRW
Ga0209474_104128951	3300026550	Soil	TPACFSWAAGERIALIAGDWHGRCIDAVFYNFARRSTCETWCH
Ga0179587_109902862	3300026557	Vadose Zone Soil	ARTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCEVWCGGGGWW
Ga0209799_10262622	3300027654	Tropical Forest Soil	RLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0209689_10052588	3300027748	Soil	RIRLIAGDWNGRCVAALFYNFYRRNTCEVWCGGGGWW
Ga0209481_104708652	3300027880	Populus Rhizosphere	GMSPACFNWVAGERITLIAGDWNARCVGAVFYNFARRNRCEMLCGWRW
Ga0307276_100787521	3300028705	Soil	TPACFSWVAGERITLVAGDWNAHCVVAVFYNFYRRNTCEMWCGGGGWW
Ga0307291_10665251	3300028707	Soil	AAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0307317_100276304	3300028720	Soil	RSPACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0307319_100544651	3300028722	Soil	AGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW
Ga0307299_100421511	3300028793	Soil	KSRACFNWAAGERIKLIAGDWNARCTEAVFYNFYRRSTCEMWCRPW
Ga0307310_105030481	3300028824	Soil	SWAAGERIKLLAGNWNARCDYAVFYNLYRRSTCEMWCGGSRW
Ga0170824_1158190621	3300031231	Forest Soil	PACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMSCGGSRW
Ga0170818_1008905611	3300031474	Forest Soil	PACWSWAAGERIKLLAGDWNARCDYAVFYNFYRRSTCEMWCGGSRW
Ga0318534_104258261	3300031544	Soil	IRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318534_107169601	3300031544	Soil	FTALTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318571_103561271	3300031549	Soil	LIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318528_100329151	3300031561	Soil	FTARTPACFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0318555_104965441	3300031640	Soil	RLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318560_105121601	3300031682	Soil	RTPACFSWAAGERIGLIAGDWHARCVDAVFYNFSRRSTCETWCR
Ga0306917_101351633	3300031719	Soil	ERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0307469_117727302	3300031720	Hardwood Forest Soil	TGWAPACFRWVAGERIRLIAGDWNGRCIGAIFYNYARRNRCEMWCGW
Ga0318500_100454613	3300031724	Soil	PSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0306918_110511951	3300031744	Soil	ERIRLIAGDWNGRCVDARFYNFYRRNTCDVWCGSGGWWW
Ga0318554_105178422	3300031765	Soil	CISWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318526_100436761	3300031769	Soil	LIGGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318547_100028716	3300031781	Soil	TPACFSWAAGERIRLLAGDWNGRCVTAVFYNFYRRSTCEMWCGGSWWW
Ga0318529_101510201	3300031792	Soil	RLSAGDWNGRCVAARFYNFYRRDTCDVWCGSGGWW
Ga0318548_104363371	3300031793	Soil	AAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318567_108991951	3300031821	Soil	SCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0306919_104811801	3300031879	Soil	IRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0306919_109724171	3300031879	Soil	RIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0306925_107710931	3300031890	Soil	AAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0318522_104043312	3300031894	Soil	TRFTALTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318520_110923992	3300031897	Soil	RIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0310910_108191752	3300031946	Soil	FSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0310909_115161982	3300031947	Soil	ATAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWW
Ga0318532_103037411	3300032051	Soil	LSAGDWNGRCVAARFYNFYRRYTCDVWCGSGGWWW
Ga0318506_102776292	3300032052	Soil	RTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRDTCDVWCGSGGWW
Ga0318575_101409621	3300032055	Soil	TPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318504_100624223	3300032063	Soil	HQRRPLHGATAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318525_101255431	3300032089	Soil	TALTPSCFSWAAGERIRLIAGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318518_102574252	3300032090	Soil	RIRLIVGDWNGRCVAARFYNFYRRNTCDVWCGSGGWWW
Ga0318519_100802641	3300033290	Soil	FTARTPACFSWAAGERIRLLAGDWNGRCVTAVFYNFYRRSTCEMWCGGSWWW
Ga0326726_123265191	3300033433	Peat Soil	AAGERIRLVAGDWNGQCVDAVFYNVWRRSTCEMWCRAWW
Ga0247830_111087561	3300033551	Soil	FVGQTPACWSWAAGERIKLLAGDWNGRCDYAVFYNFYRRSTCEMLCGGSRW

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089461

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences