Metagenome / Metatranscriptome Family F089393

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089393
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	76 residues
Representative Sequence	MTRGAERLTYEIRVRGELTDALVAALKPLGLHVEPTSNGPILVGVFRDQAELHGALQAMQDLGIELLEMRQRAE
Number of Associated Samples	90
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	29.36 %
% of genes near scaffold ends (potentially truncated)	47.71 %
% of genes from short scaffolds (< 2000 bps)	85.32 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.66

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.468 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (25.688 % of family members)
Environment Ontology (ENVO)	Unclassified (29.358 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (41.284 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.55% β-sheet: 29.41% Coil/Unstructured: 48.04%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.66
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.66
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03781	FGE-sulfatase	16.51
PF00196	GerE	3.67
PF01594	AI-2E_transport	1.83
PF17101	Stealth_CR1	1.83
PF14559	TPR_19	0.92
PF01048	PNP_UDP_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	Posttranslational modification, protein turnover, chaperones [O]	16.51
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.83
COG0775	Nucleoside phosphorylase/nucleosidase, includes 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase MtnN and futalosine hydrolase MqnB	Nucleotide transport and metabolism [F]	0.92
COG0813	Purine-nucleoside phosphorylase	Nucleotide transport and metabolism [F]	0.92
COG2820	Uridine phosphorylase	Nucleotide transport and metabolism [F]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.47 %
Unclassified	root	N/A	38.53 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.47 %
Unclassified	root	N/A	38.53 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.47 %
Unclassified	root	N/A	38.53 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	53.21 %
Unclassified	root	N/A	38.53 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	51.38 %
Unclassified	root	N/A	38.53 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	40.37 %
Unclassified	root	N/A	38.53 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.53 %
Propionibacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	13.76 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	2.75 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	1.83 %
Micromonosporales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales	0.92 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.53 %
Nocardioidaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	12.84 %
Hansschlegelia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Hansschlegelia	1.83 %
Actinomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae	1.83 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.92 %
Micromonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.53 %
Mumia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	11.01 %
Schaalia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia	1.83 %
Hansschlegelia quercus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Hansschlegelia → Hansschlegelia quercus	1.83 %
Phytomonospora	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytomonospora	0.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.53 %
Mumia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	11.01 %
unclassified Schaalia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia → unclassified Schaalia	1.83 %
Hansschlegelia quercus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Hansschlegelia → Hansschlegelia quercus	1.83 %
Phytomonospora endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytomonospora → Phytomonospora endophytica	0.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.53 %
Mumia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	11.01 %
Schaalia sp. JY-X169	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia → unclassified Schaalia → Schaalia sp. JY-X169	1.83 %
Hansschlegelia quercus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Hansschlegelia → Hansschlegelia quercus	1.83 %
Phytomonospora endophytica	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytomonospora → Phytomonospora endophytica	0.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_9087108	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1689	Open in IMG/M
3300000559\|F14TC_102467534	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1738	Open in IMG/M
3300000891\|JGI10214J12806_13783685	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	951	Open in IMG/M
3300000956\|JGI10216J12902_100980894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2068	Open in IMG/M
3300000956\|JGI10216J12902_105947935	Not Available	501	Open in IMG/M
3300001431\|F14TB_100890455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	1294	Open in IMG/M
3300004114\|Ga0062593_100855374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	913	Open in IMG/M
3300004114\|Ga0062593_102720945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300004157\|Ga0062590_101807011	Not Available	627	Open in IMG/M
3300004463\|Ga0063356_100227120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2234	Open in IMG/M
3300005093\|Ga0062594_100686407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	920	Open in IMG/M
3300005161\|Ga0066807_1029909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	588	Open in IMG/M
3300005337\|Ga0070682_100184832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1459	Open in IMG/M
3300005444\|Ga0070694_101346271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	601	Open in IMG/M
3300005539\|Ga0068853_100075379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2944	Open in IMG/M
3300006169\|Ga0082029_1190895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	764	Open in IMG/M
3300006876\|Ga0079217_10919835	Not Available	627	Open in IMG/M
3300009094\|Ga0111539_12688330	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300009098\|Ga0105245_10125044	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2406	Open in IMG/M
3300009789\|Ga0126307_10998048	Not Available	676	Open in IMG/M
3300009840\|Ga0126313_10294923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Hansschlegelia → Hansschlegelia quercus	1267	Open in IMG/M
3300009840\|Ga0126313_11140470	Not Available	641	Open in IMG/M
3300010036\|Ga0126305_10781766	Not Available	648	Open in IMG/M
3300010037\|Ga0126304_10779593	Not Available	648	Open in IMG/M
3300010038\|Ga0126315_10393628	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	870	Open in IMG/M
3300010041\|Ga0126312_11181323	Not Available	564	Open in IMG/M
3300010045\|Ga0126311_10294991	Not Available	1219	Open in IMG/M
3300010396\|Ga0134126_11110850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	881	Open in IMG/M
3300011000\|Ga0138513_100000068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4364	Open in IMG/M
3300011000\|Ga0138513_100033608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia → unclassified Schaalia → Schaalia sp. JY-X169	752	Open in IMG/M
3300011332\|Ga0126317_10839313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	546	Open in IMG/M
3300012212\|Ga0150985_114769590	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1394	Open in IMG/M
3300012469\|Ga0150984_104076550	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2871	Open in IMG/M
3300012478\|Ga0157328_1005643	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	737	Open in IMG/M
3300012496\|Ga0157353_1036452	Not Available	547	Open in IMG/M
3300012501\|Ga0157351_1043368	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales → Actinomycetaceae → Schaalia → unclassified Schaalia → Schaalia sp. JY-X169	569	Open in IMG/M
3300012510\|Ga0157316_1003186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1167	Open in IMG/M
3300012891\|Ga0157305_10166069	Not Available	607	Open in IMG/M
3300012896\|Ga0157303_10013868	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300012897\|Ga0157285_10041184	Not Available	1088	Open in IMG/M
3300012902\|Ga0157291_10259033	Not Available	583	Open in IMG/M
3300012902\|Ga0157291_10333827	Not Available	538	Open in IMG/M
3300012908\|Ga0157286_10339304	Not Available	563	Open in IMG/M
3300012911\|Ga0157301_10030027	Not Available	1275	Open in IMG/M
3300012937\|Ga0162653_100001755	Not Available	1899	Open in IMG/M
3300012941\|Ga0162652_100000069	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4690	Open in IMG/M
3300012955\|Ga0164298_10719434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	703	Open in IMG/M
3300014497\|Ga0182008_10286578	Not Available	858	Open in IMG/M
3300015371\|Ga0132258_10102907	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6735	Open in IMG/M
3300015371\|Ga0132258_10113194	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	6428	Open in IMG/M
3300015371\|Ga0132258_10113429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6422	Open in IMG/M
3300015371\|Ga0132258_11312297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1829	Open in IMG/M
3300015372\|Ga0132256_100531510	All Organisms → cellular organisms → Bacteria	1288	Open in IMG/M
3300015372\|Ga0132256_100981165	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	960	Open in IMG/M
3300015373\|Ga0132257_100259984	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2076	Open in IMG/M
3300017792\|Ga0163161_10359222	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1160	Open in IMG/M
3300018028\|Ga0184608_10152916	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micromonosporales → Micromonosporaceae → Phytomonospora → Phytomonospora endophytica	995	Open in IMG/M
3300018066\|Ga0184617_1008990	Not Available	1935	Open in IMG/M
3300018073\|Ga0184624_10104678	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1214	Open in IMG/M
3300018465\|Ga0190269_10075579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1600	Open in IMG/M
3300019269\|Ga0184644_1394791	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	795	Open in IMG/M
3300019356\|Ga0173481_10011358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2526	Open in IMG/M
3300019356\|Ga0173481_10068336	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300019362\|Ga0173479_10002367	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4262	Open in IMG/M
3300019767\|Ga0190267_10073315	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1266	Open in IMG/M
3300019767\|Ga0190267_10318366	All Organisms → cellular organisms → Bacteria	818	Open in IMG/M
3300019767\|Ga0190267_10841634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	617	Open in IMG/M
3300019767\|Ga0190267_11236495	Not Available	551	Open in IMG/M
3300020005\|Ga0193697_1107726	Not Available	659	Open in IMG/M
3300022883\|Ga0247786_1021115	Not Available	1236	Open in IMG/M
3300022883\|Ga0247786_1037326	Not Available	960	Open in IMG/M
3300022889\|Ga0247785_1016277	Not Available	800	Open in IMG/M
3300022892\|Ga0247753_1033350	Not Available	619	Open in IMG/M
3300022898\|Ga0247745_1011318	Not Available	1204	Open in IMG/M
3300025899\|Ga0207642_10868173	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	577	Open in IMG/M
3300025932\|Ga0207690_10105869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2018	Open in IMG/M
3300025934\|Ga0207686_10761496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	774	Open in IMG/M
3300025949\|Ga0207667_11191966	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	741	Open in IMG/M
3300027886\|Ga0209486_11170532	Not Available	526	Open in IMG/M
3300028705\|Ga0307276_10099922	Not Available	700	Open in IMG/M
3300028705\|Ga0307276_10191233	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	535	Open in IMG/M
3300028744\|Ga0307318_10077212	Not Available	1115	Open in IMG/M
3300028754\|Ga0307297_10364989	Not Available	529	Open in IMG/M
3300028814\|Ga0307302_10285862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	810	Open in IMG/M
3300030496\|Ga0268240_10016536	All Organisms → cellular organisms → Bacteria	1343	Open in IMG/M
3300031058\|Ga0308189_10079143	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	993	Open in IMG/M
3300031092\|Ga0308204_10091073	Not Available	824	Open in IMG/M
3300031093\|Ga0308197_10433534	Not Available	523	Open in IMG/M
3300031094\|Ga0308199_1010431	Not Available	1398	Open in IMG/M
3300031152\|Ga0307501_10290737	Not Available	500	Open in IMG/M
3300031199\|Ga0307495_10163615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	586	Open in IMG/M
3300031731\|Ga0307405_11247869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales	645	Open in IMG/M
3300031731\|Ga0307405_11943243	Not Available	525	Open in IMG/M
3300031824\|Ga0307413_11520320	Not Available	592	Open in IMG/M
3300031852\|Ga0307410_10826903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	789	Open in IMG/M
3300031901\|Ga0307406_10590638	Not Available	914	Open in IMG/M
3300031903\|Ga0307407_10015055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	3807	Open in IMG/M
3300031903\|Ga0307407_10427596	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300031938\|Ga0308175_101016253	Not Available	917	Open in IMG/M
3300031938\|Ga0308175_103127054	Not Available	514	Open in IMG/M
3300031995\|Ga0307409_100042841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3393	Open in IMG/M
3300032002\|Ga0307416_103132834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	553	Open in IMG/M
3300032004\|Ga0307414_10141791	Not Available	1883	Open in IMG/M
3300032004\|Ga0307414_12116405	Not Available	525	Open in IMG/M
3300032126\|Ga0307415_100337734	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Hansschlegelia → Hansschlegelia quercus	1263	Open in IMG/M
3300032180\|Ga0307471_101453519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	845	Open in IMG/M
3300032205\|Ga0307472_100784760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae → Mumia	868	Open in IMG/M
3300033550\|Ga0247829_10903828	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Nocardioidaceae	735	Open in IMG/M
3300034113\|Ga0364937_029425	Not Available	951	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	69.72%
Host-Associated	Host-Associated	30.28%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.14%
Plants	Host-Associated → Plants	30.28%
Aquatic	Environmental → Aquatic	4.59%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.55%
Rhizosphere	Host-Associated → Plants → Rhizosphere	18.35%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.93%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	3.67%
Sediment	Environmental → Aquatic → Sediment	2.75%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.88%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	14.68%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	6.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	5.50%
Loam	Environmental → Terrestrial → Soil → Loam	3.67%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	3.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	38.53%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	14.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	10.09%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	6.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	5.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	1.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	25.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	11.01%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.59%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.67%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	3.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.83%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005161	Soil and rhizosphere microbial communities from Laval, Canada - mgLPA	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012478	Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.9.old.080610	Host-Associated	Open in IMG/M
3300012496	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.090610	Environmental	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012510	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012897	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1	Environmental	Open in IMG/M
3300012902	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S169-409C-1	Environmental	Open in IMG/M
3300012908	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S089-202R-1	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018066	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_b1	Environmental	Open in IMG/M
3300018073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020005	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3m2	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022889	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S096-311B-4	Environmental	Open in IMG/M
3300022892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S169-409R-5	Environmental	Open in IMG/M
3300022898	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5	Environmental	Open in IMG/M
3300025899	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028754	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_157	Environmental	Open in IMG/M
3300028814	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183	Environmental	Open in IMG/M
3300030496	Bulk soil microbial communities from Mexico - Penjamo (Pe) metaG (v2)	Environmental	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031092	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_367 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031093	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031094	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_203 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031731	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_03142600	2088090015	Soil	MSPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT
F14TC_1024675342	3300000559	Soil	TYEIRVRGELTDALIAALKSLGLRVERTSTGPVLIGPFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
JGI10214J12806_137836852	3300000891	Soil	MTRGAERLTYEIRVRGELTEALLAALRPVGLQVEQTSDGAILVGVFRDQAELHGALQAMQDLGIELVEMRQRAQWT*
JGI10216J12902_1009808942	3300000956	Soil	MTRGAERLTYEIRVRGELTDALVAALRPLGLHVEQTSDGAILVGVFRDQAELHGALQAMQDLGVELVEMRQRAEWT*
JGI10216J12902_1059479352	3300000956	Soil	GQHWPSGRLTVMIGGARRLTYEIRVRGQLTDALVAALGALNLRIEQTQTDAILVGDFRDQAELHGALQAMQDLGVELLEVRQRAR*
F14TB_1008904552	3300001431	Soil	MTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPSGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT*
Ga0062593_1008553742	3300004114	Soil	MSPGAERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0062593_1027209452	3300004114	Soil	RPTGSGTVMTRGAERLTYEIRVRGELTEALLAALRPVGLQVEQTSDGAILVGVFRDQAELHGALQAMQDLGIELVEMRQRAQWT*
Ga0062590_1018070112	3300004157	Soil	MSPGAERLTYEIRVRGELTDALIAALKPLGLRVEQTSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0063356_1002271203	3300004463	Arabidopsis Thaliana Rhizosphere	MTRGAERQTYEIRVRGELTDALIAALKPLGMHVEQTVNGPTLVGAFRDQAELHGALEAMQDLGIELLEMRQR*
Ga0062594_1006864071	3300005093	Soil	MTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVNGPTLVGAFRDQAELHGALQAMQDLGIELLEM
Ga0066807_10299092	3300005161	Soil	MTRGAERLTYEIRVRGELTDALVAALKPLGLQVEPTSNGPILVGVFRDQAELHGALQAMQDL
Ga0070682_1001848321	3300005337	Corn Rhizosphere	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELMEIRQRAGWT*
Ga0070694_1013462712	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVNGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR*
Ga0068853_1000753792	3300005539	Corn Rhizosphere	MTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVSGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR*
Ga0082029_11908952	3300006169	Termite Nest	GAGVHGPSGSGTAMTRGAERLTYEIRVRGELTDALVAALKPLGLHVEQTASGPILVGAFRDQAELHGALQAMQDLGVELVEMRQKAAWT*
Ga0079217_109198351	3300006876	Agricultural Soil	MTRGAARLTYEIRVRGELTDALVAALEALNLHIEATGNGTILVGVFRDQAELHGALQAMQDF
Ga0111539_126883301	3300009094	Populus Rhizosphere	MTRGAERYEIRVRGEVPDALVAALSALNLNIEQTANGAILIGVFRDQAELHGALQAMQDFGVELVEV
Ga0105245_101250442	3300009098	Miscanthus Rhizosphere	MTRGAERLTYEIRVRGELTDALVAALKPLGLQVEPTSNGPILVGVFRDQAELHGALQAMQDLGIELLEMPQRAE*
Ga0126307_109980481	3300009789	Serpentine Soil	RVRGELTDALVAALEALNLHIEATGNGTILVGVFRDQAELHGALQAMQDFGVELVEIRQR
Ga0126313_102949232	3300009840	Serpentine Soil	MTTGAERLTYEIRVRGELTDALVAALQALNLDIEQTANGTILVGVFRDQPELLSALQAMHDCVELVEVRQRCTSVPRDAGGP*
Ga0126313_111404701	3300009840	Serpentine Soil	MATVMTRGAERLTYEIRVRGKLTDALLAALEPLGLRVEETSSGPVLIGSFRDQAELHGALQALQDLGVELVEMRQAAGWT*
Ga0126305_107817661	3300010036	Serpentine Soil	MTKGARRLTYEIRVRGELNDALVAALQALNVHIEQTANNAILVGVFRDQAELHGALQAMQDFGVE
Ga0126304_107795931	3300010037	Serpentine Soil	MTTGAERLTYEIRVRGELTDALVAALQALNLDIEQTANGTILVGVFRDQPELLSALQAMHDCVELVEVRQRFTSVPRDAGGP*
Ga0126315_103936281	3300010038	Serpentine Soil	MTRGAERLTYEIRVRGELTDALVAALQALSLHIEQTENGTILIGVFRDQAELHGALQDMQDFGVEL
Ga0126312_111813232	3300010041	Serpentine Soil	MTRGAERLTYEIRVRGDLTDALVAALEPLGLHVEQTPSGPILVGAFPDQAELHGALRAMQDLGVELLEVRQKAAWT*
Ga0126311_102949911	3300010045	Serpentine Soil	MTTGAERLTYEIRARGELTDALVAALQALNLDIEQTANGTILVGVFRDQPELLGALQAMHDFGVELVEVRQRCTSVPRDAGGP*
Ga0134126_111108502	3300010396	Terrestrial Soil	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELMEIRQRA
Ga0138513_1000000685	3300011000	Soil	MSPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGAFRDQAELHGALQAMQDLGIELLEMRQTAGWT*
Ga0138513_1000336082	3300011000	Soil	MNGGAERLTYEIRVRGELTDALLAALEPLGLHVEESSNAPILVGVFRDQAELHGALQAMQDLGVELVEIRQRAGWT*
Ga0126317_108393131	3300011332	Soil	NVDRNQPEPMVMNGGAAVRLTYEIRVRGELTDALLAALEPLGLHVERFSNGPILVGVFRDQAELHGALQAMQDLGVELVEMRQRAGWT*
Ga0150985_1147695901	3300012212	Avena Fatua Rhizosphere	MNGGAAVRLTYEIRVRGELTDALLAALEPLGLTVERFSNGPILVGVFRDQAELHGALQAMQDLGVELVEMRQRAGWT*
Ga0150984_1040765502	3300012469	Avena Fatua Rhizosphere	MIAGAGRLCYEIRVRGELTDALTAALQPLGLQVEQTPSGPMLLGMFRDQAELHGALQAMQDLGVELVEIRQRAGWT*
Ga0157328_10056431	3300012478	Arabidopsis Rhizosphere	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELVEIRQRAGWT*
Ga0157353_10364522	3300012496	Unplanted Soil	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGV
Ga0157351_10433682	3300012501	Unplanted Soil	AERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELVEIRQRAGWT*
Ga0157316_10031862	3300012510	Arabidopsis Rhizosphere	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLG
Ga0157305_101660692	3300012891	Soil	MSPGAERLTYEIRVRGELTAALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGW
Ga0157303_100138682	3300012896	Soil	SGPEEHCAVMSPGAERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0157285_100411842	3300012897	Soil	MNGGAAVRLTYEIRVRGEMTDALAAVLEPLGLQVEDSSDGSILVGVFRDQAELHGALQAMQDLGVELVEIRQRAGWT*
Ga0157291_102590331	3300012902	Soil	MSPGAERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVEL
Ga0157291_103338272	3300012902	Soil	ERLTYEIRVRGELTDALIAALKPLGLRVEQTSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0157286_103393042	3300012908	Soil	LTYEIRVRGELTDALIAALKPLGLRVEQTSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0157301_100300272	3300012911	Soil	MSPGAERLTYEIRVRGELTDALIAALKSLGLRVERTSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0162653_1000017552	3300012937	Soil	MSPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0162652_1000000692	3300012941	Soil	MSPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGTFRDQAELHGALQAMQDLGVELLEMRQTAGWT*
Ga0164298_107194341	3300012955	Soil	YEIRVRGELTEALLAALEPLGLEVEELSSAPLLVGVFRDQAELHGALQALQDLGVELVEIRPRAEWT*
Ga0182008_102865782	3300014497	Rhizosphere	MTRGAGRLTYEIRVRGELTDALVAALEHLGLRVEQTSDGPILVGAFRDQAELHGALQAMQDLGVELVEMRQTAGWT*
Ga0132258_101029075	3300015371	Arabidopsis Rhizosphere	MTRGAERLTYEIRVRGELTDALVAALKPLGLHVEPTSNGPVLVGVFRDQAELHGALQAMQDLGIELLEMRQRAE*
Ga0132258_101131944	3300015371	Arabidopsis Rhizosphere	MTRGAERLTYEIRVRGELTDALVAALKPLGLQVEATSDGPILVGVFRDQAELHGALQAMQDLGIELLEMRQRAE*
Ga0132258_101134295	3300015371	Arabidopsis Rhizosphere	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELMEIRQRAEWT*
Ga0132258_113122972	3300015371	Arabidopsis Rhizosphere	MTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVNGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQRP*
Ga0132256_1005315102	3300015372	Arabidopsis Rhizosphere	MTRGAERLTYEIRVRGELTDGLVAALKPLGLQVEATSDGPILVGVFRDQAELHGALQAMQDLGIELLEMRQRAE*
Ga0132256_1009811651	3300015372	Arabidopsis Rhizosphere	MTRGAERQIYEIRVRGELTDALVAALEPLGLQLEETADGAILVGAFRDQAELHGALEAIDSGLMSRG
Ga0132257_1002599843	3300015373	Arabidopsis Rhizosphere	MTRGAERLTYEIRVRGELTDALVAALKPLGLQVETTSNGPILVGVFRDQAELHGALQAMQDLGI
Ga0163161_103592221	3300017792	Switchgrass Rhizosphere	PGHHRSIGSGTVMTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVNGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR
Ga0184608_101529163	3300018028	Groundwater Sediment	MTRGAERLTYEIRVRGELTDALVAALKPLGLQVKPTSDGPILVGVFRDQAELHGALQAMQDLDIELLEMRQRAE
Ga0184617_10089902	3300018066	Groundwater Sediment	MSPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGAFRDQAELHGALQAMQDLGIELLEMRQTAGWT
Ga0184624_101046781	3300018073	Groundwater Sediment	TYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGTFRDQAELHGALQAMQDLGIELLEMRQTAGWT
Ga0190269_100755792	3300018465	Soil	LRVNVWRQHVPKELQSREPVGDRHYRLRGCDVDHLSSGCGTVMTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPSGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0184644_13947911	3300019269	Groundwater Sediment	IRVRGELTDALVAALKPLGLQVEPTSDGPILVGVFRDQAELHGALQAMQDLGIELLEMRQRAE
Ga0173481_100113582	3300019356	Soil	MSPGAERLTYEIRVRGELTDALIAALKPLGLRVEQTSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0173481_100683362	3300019356	Soil	ERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0173479_100023672	3300019362	Soil	MSPGAERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0190267_100733152	3300019767	Soil	MIGGAGRLCYEIRVRGELTDALTAALQPLGLQVEQTPSGPMLLGMFRDQAELHGALQAMQDLGVELVEIRQRAGWT
Ga0190267_103183661	3300019767	Soil	MTRGAERLTYEMRVRGDLADALVAALKPLGLHVEQTPGGPILVGAFRDQAELHGALQAMQDLRIELVEMRQKAAWT
Ga0190267_108416341	3300019767	Soil	HYRLRGCDVDHLSSGCGTVMTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPSGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0190267_112364952	3300019767	Soil	MTGRRAARQTTYEIRVRGELTPALVAALGALNLRIEQTEAGPALFGVFRDQAEFHGALQALADLGIELMSVRQLES
Ga0193697_11077261	3300020005	Soil	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELMEIRQRAGWT
Ga0247786_10211151	3300022883	Soil	MSPGAERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGV
Ga0247786_10373262	3300022883	Soil	MSPGAERLTYEIRVRGEMTDALAAVLEPLGLQVEDSSDGSILVGVFRDQAELHGALQAMQDLGVELVEIRQRAGWT
Ga0247785_10162771	3300022889	Soil	GLPQRSPRRSDVLSGPEEHCAVMSPGAERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0247753_10333502	3300022892	Soil	AERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0247745_10113182	3300022898	Soil	MSPGAERLTYEIRVRGELTDALIAALKPLGLRIEETSTGPVLIGAFRDQAELHGALQAMQDLG
Ga0207642_108681731	3300025899	Miscanthus Rhizosphere	MTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVNGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR
Ga0207690_101058693	3300025932	Corn Rhizosphere	MTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVNGPTLVGAFRDQAELHGALQAMQDLGIEL
Ga0207686_107614962	3300025934	Miscanthus Rhizosphere	RDRYLGPGHHGSIGSGTVMTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVSGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR
Ga0207667_111919661	3300025949	Corn Rhizosphere	MTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVSGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR
Ga0209486_111705321	3300027886	Agricultural Soil	MTRGAARLTYEIRVRGELTDALVAALEALNLHIEATGNGTILVGVFRDQAELHGALQAMQDFG
Ga0307276_100999222	3300028705	Soil	MTPGAERLTYEIRVRGELTDALIAALKPLGLRLEQTSTGPVLIGTFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0307276_101912331	3300028705	Soil	MNGGAAVRLTYEIRVRGELTDALLAALEPLGLQVEQFSNGPILVGVFRDQAELHGALQAMQDLGVELMEIRQRAGWT
Ga0307318_100772122	3300028744	Soil	MSPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGTFRDQAELHGALQAMQDLGIELLEMRQTAGWT
Ga0307297_103649892	3300028754	Soil	GAERLTYEIRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELVEIRQRAGWT
Ga0307302_102858621	3300028814	Soil	STVMNGGAERLTYEIRVRGELTDALLAALEPLGLHVEESSNAPILVGVFRDQAELHGALQAMQDLGVELVEIRQRAEWT
Ga0268240_100165362	3300030496	Soil	MGDRHDRLRGCDVDHLSSGCGTVMTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTSNGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0308189_100791432	3300031058	Soil	VRLTYEIRVRGELTDALLAALEPLGLQVEQFSNGPILVGVFRDQAELHGALQAMQDLGVELMEIRQRAGWT
Ga0308204_100910732	3300031092	Soil	VMSPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGTFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0308197_104335342	3300031093	Soil	VRLTYEIRVRGELTDALLAALEPLGLQVEQFSNGPILVGVFRDQAELHGALQAMQDLGVELMEIRQRAGW
Ga0308199_10104312	3300031094	Soil	MTPGAERLTYEIRVRGELTAALIAALKPLGLRVERTSTGPVLIGAFRDQAELHGALQAMQDLGIELLEMRQTAGWT
Ga0307501_102907371	3300031152	Soil	GGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELMEIRQRAGWT
Ga0307495_101636151	3300031199	Soil	MTRGAERLTYEIRVRGELTDALVAALKPLGLHVEPTSNGPILVGVFRDQAELHGALQAMQDLGIELLEMRQRAE
Ga0307405_112478692	3300031731	Rhizosphere	MPTGAERLTYEIRVRGELTDALVAALQALNLDIEQTANGTILVGVFRDQPELLGALQAMHDFGVELVEVR
Ga0307405_119432431	3300031731	Rhizosphere	MATVMTRGAERLTYEIRVRGKLTDALLAALEPLGLRVEETSSGPVLIGSFRDQAELHGALQALQDLGVELVEMRQAAGWT
Ga0307413_115203201	3300031824	Rhizosphere	MGDRRYRRRGRDVDHLSSGCGTVMTRGAERQIYEIRVRGDLTDALVAALKQLGLHVEQTASGPILVGAFRDQAELHGALQAMQDLGIELVEMRQR
Ga0307410_108269032	3300031852	Rhizosphere	MGDRRYRRRGRDVDHLSSGCGTVMTRGAERQIYEIRVRGDLTDALVSALKQLGLHIEQTPSGQILVGAFRDQAELHGALQAMQDLGVELVEMRQRAAWT
Ga0307406_105906382	3300031901	Rhizosphere	LRVNVWRQHVPKELQSREPVGDPHYRLRGCDVDHLSSGCGTVMTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPSGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0307407_100150553	3300031903	Rhizosphere	VRGKLTDALLAALEPLGLRVEETSSGPVLIGSFRDQAELHGALQALQDLGVELVEMRQAAGWT
Ga0307407_104275961	3300031903	Rhizosphere	GCGTVMTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPSGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0308175_1010162532	3300031938	Soil	MTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPSGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0308175_1031270541	3300031938	Soil	RDHRSNGRGAVMTPGAERLTYEIRVRGELTDALIAALKPLGLRLEQTSTGPVLIGTFRDQAELHGALQAMQDLGVELLEMRQTAGWT
Ga0307409_1000428414	3300031995	Rhizosphere	MTRGAERLTYEIRVRGDLTDALVAALEPLGLHVEQTPSGPILVGAFRDQAELHGALRAMQDLGVELLEV
Ga0307416_1031328341	3300032002	Rhizosphere	DRLRGCDVDHLSSGCGTVMTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPNGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0307414_101417912	3300032004	Rhizosphere	MTRGAERQTYEIRVRGDLTDALVAALKPLGLHVEQTPNGPILVGAFRDQAELHGALQAMQDLGIELVEMRQKAAWT
Ga0307414_121164051	3300032004	Rhizosphere	MTTGAERLTYEIRARGELTDALVAALQALNLDIEQTANGTILVGVFRDQPELLGALQAMHDFGVELVEVRQRCTSVPRDAGGP
Ga0307415_1003377341	3300032126	Rhizosphere	MTTGAERLTYEIRVRGELTDALVAALQALNLDIEQTANGTILVGVFRDQPELLSALQAMHDCVELVEVRQRFTSVPRDAGGP
Ga0307471_1014535192	3300032180	Hardwood Forest Soil	MNGGAERLTYEMRVRGELTEALLAALEPLGLEVEELSSAPILVGVFRDQAELHGALQALQDLGVELVEIRQRAGWT
Ga0307472_1007847601	3300032205	Hardwood Forest Soil	YEIRVRGELTDALIAALKPLGLHVEQTVSGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR
Ga0247829_109038282	3300033550	Soil	CDRYLGPGHHGSIGSGTVMTRGAERQTYEIRVRGELTDALIAALKPLGLHVEQTVNGPTLVGAFRDQAELHGALQAMQDLGIELLEMRQR
Ga0364937_029425_2_199	3300034113	Sediment	MTRGAERLTYEIRVRGELTDALVAALQALNLRIEETANGTILVGVFRDQSELHGALQAMQDFGVEL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089393

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences