Metagenome / Metatranscriptome Family F089386

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089386
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	77 residues
Representative Sequence	MRIWITGCAVGLAVLLGASPLAFAQDAPDRARLQRRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR
Number of Associated Samples	88
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	90.83 %
% of genes near scaffold ends (potentially truncated)	23.85 %
% of genes from short scaffolds (< 2000 bps)	82.57 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (66.972 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (22.936 % of family members)
Environment Ontology (ENVO)	Unclassified (38.532 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 12.15% β-sheet: 28.97% Coil/Unstructured: 58.88%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF06262	Zincin_1	36.70
PF00330	Aconitase	22.94
PF03972	MmgE_PrpD	0.92
PF07883	Cupin_2	0.92
PF08327	AHSA1	0.92
PF01245	Ribosomal_L19	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3824	Predicted Zn-dependent protease, minimal metalloprotease (MMP)-like domain	Posttranslational modification, protein turnover, chaperones [O]	36.70
COG0335	Ribosomal protein L19	Translation, ribosomal structure and biogenesis [J]	0.92
COG2079	2-methylcitrate dehydratase PrpD	Carbohydrate transport and metabolism [G]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	66.97 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	35.78 %
Unclassified	root	N/A	33.03 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	28.44 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.09 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Rhodovulum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
unclassified Rhodovulum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	33.03 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1.83 %
Rhodovulum sp. PH10	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001356\|JGI12269J14319_10303518	Not Available	575	Open in IMG/M
3300002917\|JGI25616J43925_10034337	All Organisms → cellular organisms → Bacteria → Proteobacteria	2235	Open in IMG/M
3300004633\|Ga0066395_10103534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1376	Open in IMG/M
3300005332\|Ga0066388_100125014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3104	Open in IMG/M
3300005332\|Ga0066388_100258964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2380	Open in IMG/M
3300005332\|Ga0066388_100449741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1930	Open in IMG/M
3300005332\|Ga0066388_101346647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1235	Open in IMG/M
3300005332\|Ga0066388_105815848	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300005764\|Ga0066903_100236211	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2796	Open in IMG/M
3300005764\|Ga0066903_100624216	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1876	Open in IMG/M
3300005764\|Ga0066903_104353766	All Organisms → cellular organisms → Bacteria	756	Open in IMG/M
3300005764\|Ga0066903_104518336	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300006047\|Ga0075024_100096470	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1292	Open in IMG/M
3300006047\|Ga0075024_100661686	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300006086\|Ga0075019_10168388	All Organisms → cellular organisms → Bacteria → Proteobacteria	1287	Open in IMG/M
3300006162\|Ga0075030_101094848	Not Available	627	Open in IMG/M
3300006172\|Ga0075018_10047240	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1780	Open in IMG/M
3300006178\|Ga0075367_10759455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	617	Open in IMG/M
3300006354\|Ga0075021_10264951	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300007255\|Ga0099791_10020790	All Organisms → cellular organisms → Bacteria → Proteobacteria	2819	Open in IMG/M
3300007258\|Ga0099793_10160104	All Organisms → cellular organisms → Bacteria	1069	Open in IMG/M
3300007788\|Ga0099795_10027376	All Organisms → cellular organisms → Bacteria → Proteobacteria	1928	Open in IMG/M
3300009090\|Ga0099827_11761436	Not Available	540	Open in IMG/M
3300009143\|Ga0099792_10086874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1614	Open in IMG/M
3300009792\|Ga0126374_11848192	Not Available	506	Open in IMG/M
3300009826\|Ga0123355_11130269	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300010049\|Ga0123356_10445266	All Organisms → cellular organisms → Bacteria → Proteobacteria	1442	Open in IMG/M
3300010159\|Ga0099796_10189363	Not Available	829	Open in IMG/M
3300010358\|Ga0126370_11643589	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300010359\|Ga0126376_12468857	Not Available	567	Open in IMG/M
3300010360\|Ga0126372_10463828	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300010360\|Ga0126372_12648160	Not Available	553	Open in IMG/M
3300010361\|Ga0126378_12083587	Not Available	647	Open in IMG/M
3300010362\|Ga0126377_11046644	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300010362\|Ga0126377_11770284	Not Available	693	Open in IMG/M
3300010366\|Ga0126379_11275423	Not Available	841	Open in IMG/M
3300010366\|Ga0126379_11803767	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300010398\|Ga0126383_11218799	All Organisms → cellular organisms → Bacteria	842	Open in IMG/M
3300010398\|Ga0126383_11398658	All Organisms → cellular organisms → Bacteria	789	Open in IMG/M
3300011269\|Ga0137392_10018845	All Organisms → cellular organisms → Bacteria	4799	Open in IMG/M
3300011269\|Ga0137392_10786882	All Organisms → cellular organisms → Bacteria	786	Open in IMG/M
3300011269\|Ga0137392_11449707	All Organisms → cellular organisms → Bacteria	545	Open in IMG/M
3300011271\|Ga0137393_10234339	Not Available	1555	Open in IMG/M
3300011271\|Ga0137393_11559533	Not Available	550	Open in IMG/M
3300012189\|Ga0137388_10504800	Not Available	1123	Open in IMG/M
3300012189\|Ga0137388_11347597	All Organisms → cellular organisms → Bacteria	653	Open in IMG/M
3300012205\|Ga0137362_10082324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2686	Open in IMG/M
3300012205\|Ga0137362_10083884	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2662	Open in IMG/M
3300012361\|Ga0137360_10253482	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1446	Open in IMG/M
3300012362\|Ga0137361_10288200	All Organisms → cellular organisms → Bacteria	1501	Open in IMG/M
3300012363\|Ga0137390_11262974	Not Available	685	Open in IMG/M
3300012918\|Ga0137396_10123484	All Organisms → cellular organisms → Bacteria → Proteobacteria	1868	Open in IMG/M
3300012922\|Ga0137394_10111928	All Organisms → cellular organisms → Bacteria → Proteobacteria	2306	Open in IMG/M
3300012925\|Ga0137419_10655268	Not Available	848	Open in IMG/M
3300012948\|Ga0126375_10181300	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1362	Open in IMG/M
3300012971\|Ga0126369_12180153	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300017822\|Ga0187802_10166422	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	844	Open in IMG/M
3300017970\|Ga0187783_10015119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5694	Open in IMG/M
3300017975\|Ga0187782_10780883	Not Available	738	Open in IMG/M
3300017995\|Ga0187816_10325764	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300018060\|Ga0187765_10412050	Not Available	837	Open in IMG/M
3300020199\|Ga0179592_10302393	All Organisms → cellular organisms → Bacteria	711	Open in IMG/M
3300020582\|Ga0210395_11307549	Not Available	531	Open in IMG/M
3300020583\|Ga0210401_11114107	Not Available	648	Open in IMG/M
3300021168\|Ga0210406_10055802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3440	Open in IMG/M
3300021170\|Ga0210400_10811886	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300021178\|Ga0210408_10580542	All Organisms → cellular organisms → Bacteria	889	Open in IMG/M
3300021404\|Ga0210389_10378702	All Organisms → cellular organisms → Bacteria	1112	Open in IMG/M
3300021420\|Ga0210394_11219282	Not Available	645	Open in IMG/M
3300021432\|Ga0210384_11909490	Not Available	500	Open in IMG/M
3300021477\|Ga0210398_10881987	Not Available	717	Open in IMG/M
3300021479\|Ga0210410_11775369	Not Available	511	Open in IMG/M
3300021860\|Ga0213851_1475729	Not Available	801	Open in IMG/M
3300021861\|Ga0213853_10074165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2575	Open in IMG/M
3300021861\|Ga0213853_10140829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2053	Open in IMG/M
3300021861\|Ga0213853_11052644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Rhodovulum → unclassified Rhodovulum → Rhodovulum sp. PH10	837	Open in IMG/M
3300021861\|Ga0213853_11179455	All Organisms → cellular organisms → Bacteria	1154	Open in IMG/M
3300022527\|Ga0242664_1052370	Not Available	749	Open in IMG/M
3300026320\|Ga0209131_1018553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4205	Open in IMG/M
3300026340\|Ga0257162_1016307	All Organisms → cellular organisms → Bacteria	883	Open in IMG/M
3300026341\|Ga0257151_1019004	Not Available	720	Open in IMG/M
3300026351\|Ga0257170_1037348	Not Available	664	Open in IMG/M
3300026359\|Ga0257163_1006389	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1717	Open in IMG/M
3300026360\|Ga0257173_1040638	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300026446\|Ga0257178_1031200	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300026482\|Ga0257172_1002964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2328	Open in IMG/M
3300026490\|Ga0257153_1004935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2604	Open in IMG/M
3300027512\|Ga0209179_1027115	All Organisms → cellular organisms → Bacteria	1153	Open in IMG/M
3300027655\|Ga0209388_1120573	Not Available	748	Open in IMG/M
3300027846\|Ga0209180_10490351	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300027854\|Ga0209517_10490541	Not Available	671	Open in IMG/M
3300027894\|Ga0209068_10417268	Not Available	767	Open in IMG/M
3300027898\|Ga0209067_10380157	Not Available	788	Open in IMG/M
3300027905\|Ga0209415_10031851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7546	Open in IMG/M
3300027910\|Ga0209583_10192962	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300027915\|Ga0209069_10013384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3926	Open in IMG/M
3300028047\|Ga0209526_10092502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2129	Open in IMG/M
3300028047\|Ga0209526_10717536	Not Available	628	Open in IMG/M
3300030659\|Ga0316363_10427801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300030707\|Ga0310038_10449746	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300031715\|Ga0307476_10602792	Not Available	814	Open in IMG/M
3300031718\|Ga0307474_11581901	Not Available	515	Open in IMG/M
3300031720\|Ga0307469_10191120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1587	Open in IMG/M
3300031781\|Ga0318547_10763566	All Organisms → cellular organisms → Bacteria	602	Open in IMG/M
3300031942\|Ga0310916_11024482	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300032174\|Ga0307470_10404619	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	966	Open in IMG/M
3300032261\|Ga0306920_101623923	All Organisms → cellular organisms → Bacteria → Proteobacteria	919	Open in IMG/M
3300033289\|Ga0310914_11429403	Not Available	595	Open in IMG/M
3300034163\|Ga0370515_0335493	Not Available	639	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.25%
Host-Associated	Host-Associated	2.75%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.65%
Aquatic	Environmental → Aquatic	15.60%
Arthropoda	Host-Associated → Arthropoda	1.83%
Plants	Host-Associated → Plants	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.65%
Sediment	Environmental → Aquatic → Sediment	9.17%
Freshwater	Environmental → Aquatic → Freshwater	6.42%
Digestive System	Host-Associated → Arthropoda → Digestive System	1.83%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	66.97%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.17%
Sediment	Environmental → Aquatic → Freshwater → Sediment	4.59%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.67%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.83%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	1.83%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	40.37%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	24.77%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.01%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.17%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	4.59%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.83%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	22.94%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	20.18%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.84%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	9.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.17%
Watersheds	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Watersheds	4.59%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.67%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006086	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006178	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2	Host-Associated	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009826	Embiratermes neotenicus P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P1	Host-Associated	Open in IMG/M
3300010049	Embiratermes neotenicus P3 segment gut microbial communities from Petit-Saut dam, French Guiana - Emb289 P3	Host-Associated	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021860	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2014 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021861	Metatranscriptome of freshwater sediment microbial communities from post-fracked creek in Pennsylvania, United States - ABR_2016 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026340	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-A	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026351	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-05-B	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026360	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-19-B	Environmental	Open in IMG/M
3300026446	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-11-B	Environmental	Open in IMG/M
3300026482	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-B	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300027512	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2 (SPAdes)	Environmental	Open in IMG/M
3300027655	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300034163	Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12269J14319_103035181	3300001356	Peatlands Soil	MRISMTAFAAGLAMVLATAATPAPAQDAQTQGRVTPHRRAPLRIEVTPPGRLYRQCIDSPVIEHRVTGDTVVPRSRCWWAVR*
JGI25616J43925_100343371	3300002917	Grasslands Soil	MRIWITGCASGLAVLLGALPLAFAQDAPDRARLQRRPPLRIEITPSGRLYRQCSDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0066395_101035342	3300004633	Tropical Forest Soil	MWIGMTSCALGLAALLGGSLPAPAQDGPDRVRLHRRAPLRIEVTPSGRLYRQCVDWHVIERRASGDTVVPRTRCWWALR*
Ga0066388_1001250143	3300005332	Tropical Forest Soil	MRIWMTGCALGLAVLLGGSQLAFAQASADRVRLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVAPRTRCWWALR*
Ga0066388_1002589641	3300005332	Tropical Forest Soil	MRISTAAYLAGLVVLLAAPPGQAQDAQGQAKLHRRAPLRIEVTPYERLYRQCTDWHVIEHRATGATVVPRSRCWWALR*
Ga0066388_1004497412	3300005332	Tropical Forest Soil	MRIWMTGCALGLAVLAGWSPQAFAQSSPDRAKLRRAPLRIEVTPSARLYRQCTDWHVIEHRASGDTVVPRTRCRWALR*
Ga0066388_1013466472	3300005332	Tropical Forest Soil	MTAYAVGLAVLLSAPAPALAQDTQGRAKLYRRTPLRVEVTPSARLYRQCIDWHVIERRATGDTVVPRARCWWALR*
Ga0066388_1058158482	3300005332	Tropical Forest Soil	MRTGMTGCALGLAVLLGGSQLAFAQDSADRARVQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVAPR
Ga0066903_1002362113	3300005764	Tropical Forest Soil	MRISMTACTLGLAVLLSAPPALAQDTQGRANVHRRAPLRIEVSPSARLYRQCTDWHVIEHRATGDTVVPRSRCWWALR*
Ga0066903_1006242163	3300005764	Tropical Forest Soil	MRIWMTSYALGLAALLGGSLPASAQDAPDRARLHHRAPLRIEVTPSGRLYRQCVDWHVIEHRPAGDTVVPRTRCWWALR*
Ga0066903_1043537661	3300005764	Tropical Forest Soil	MRIWITGCACGLAVLLGALPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHFIEHRPSGDTV
Ga0066903_1045183362	3300005764	Tropical Forest Soil	MTGCALGLAAVLGGATLAVAQDQADRARLHRRAPLRVDVAPAGRLYRQCTDWHVIEHRATGDTVVPRSWCRWAVR*
Ga0075024_1000964703	3300006047	Watersheds	MLLASTAPPALAQDGQGRVKLQRRAPLRVDVRPSGRLYRQCTDWHVIEHRATGDTVVPRSRCVWALQR*
Ga0075024_1006616861	3300006047	Watersheds	MRIYLTAYWVGLAVLLASTSPPALAQDAQDRARLHRRAPLRVEVTPSGRLYRQCSDRPVIEHRATGDTVVPRSRCWWALR*
Ga0075019_101683883	3300006086	Watersheds	MRIPMTVYGVGLAMLLASVTPPALAQDTQGRVKQLRHAPLRIEVAPSGRLYRQCADRHVIEYRATGDTVV
Ga0075030_1010948482	3300006162	Watersheds	MRIPMTVYGVGLAMLLASVTPPALAQDTQGRVKQLRHAPLRIEVAPSGRLYRQCADRHVIEHRATGDTVVPRTRCWWALR*
Ga0075018_100472403	3300006172	Watersheds	MRTLMTTCAVGLAMLLASAAPPALAQDGQGRVKLQRRAPLRVDVRPSGRLYRQCTDWHVIEHRATGDTVVPRSRCVWALQR*
Ga0075367_107594551	3300006178	Populus Endosphere	MTGILGIAALLAGASLAPAQDPPDGRRLHRRPPLRVEVTPGHLYRQCADWHVIEHRAAGDMVVPRSRCWWAVR*
Ga0075021_102649511	3300006354	Watersheds	MRISMTGYVVGLAVLLAVSPPALAQDAQGRAGLHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRARCRWALQR*
Ga0099791_100207901	3300007255	Vadose Zone Soil	MRIWITGCALGLAVLLGALPLAFAQDAPDRARLQHRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0099793_101601042	3300007258	Vadose Zone Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLHRRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0099795_100273763	3300007788	Vadose Zone Soil	MRIWITGCASGLAVLLGALPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0099827_117614362	3300009090	Vadose Zone Soil	LLGALPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPTGDTVVPRTRCWWALR*
Ga0099792_100868742	3300009143	Vadose Zone Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0126374_118481921	3300009792	Tropical Forest Soil	MTSCALGLAALLGGSLPAPAQDGPDRVRLHRRAPLRIEVTPSARLYRQCTDWHVIEHRPSGDTVVPRMRCWWALR*
Ga0123355_111302692	3300009826	Termite Gut	MRTSLIYCAVAALFCGPFAVLAQDAPDRAKLHRRGPLRVEVTPSRLYRQCTDWYVIEHRPAGDTVVPRMQCRWAVR*
Ga0123356_104452662	3300010049	Termite Gut	MRTSVICCAFAALLCGSLAGLAQDRPDRARPHRRAPLQVEVTPSRLYRQCTDWYVIEHRPAGDTVVPRMRCRWAVQ*
Ga0099796_101893632	3300010159	Vadose Zone Soil	MRIWITGSALGLAVLLGASLAFAQDAPDRAGLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRLTGDTVVPRTRCWWALR*
Ga0126370_116435891	3300010358	Tropical Forest Soil	MMSCALGLAALLGGSLPASAQDAPDRARLHHRAPLRIEVTPSGRLYRQCVDWHLIEHRASGDTVVPRTRCWWALR*
Ga0126376_124688571	3300010359	Tropical Forest Soil	MTSCALGLAALLGGSLPAPAQDGPDRVRLHRRAPLRIEVTPSGRLYRQCVDWHVIEHRASGDTVVPRTRCWWALR*
Ga0126372_104638282	3300010360	Tropical Forest Soil	MRVSMTACALGLAALLSALPPALAQDTQGRANVHRRAPLRIEVSPSARLYRQCTDWHVIEHRATGDTVVPRSRCWWALR*
Ga0126372_126481601	3300010360	Tropical Forest Soil	MRIWITGCACGLAVLLGGSQLAFAQDAPDRARVQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVAPRTRCWWALR*
Ga0126378_120835872	3300010361	Tropical Forest Soil	MTSCALGLAALLGGSLPAPAQDGPDRVRLHRRAPLRIEVTPSGRLYRHCVDWHVIEHRASGDTVVPRTRCWWALR*
Ga0126377_110466442	3300010362	Tropical Forest Soil	MRIWMTGCALGLAVLLGGSQLAFAQASADRVRLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0126377_117702842	3300010362	Tropical Forest Soil	MRISTAAYLAGLVVLLASPPGQAQDAQGQAKLHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRSRCWWALR*
Ga0126379_112754231	3300010366	Tropical Forest Soil	MTGCALGLAVLLGGSQLAFAQASADRVRLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVAPRTRCWWALR*
Ga0126379_118037672	3300010366	Tropical Forest Soil	MRISMTACALGLAVLMSAPPALAQDTQGRANVHRRAPLRIEVSPSARLYRQCTDWHVIEHRATGDTVV
Ga0126383_112187992	3300010398	Tropical Forest Soil	MRIWMTSYALGLAALLGGSLPASAQDAPDRARLHYRAPLRIEVTPSGRLYRQCVDWHVIEHRPAGDTVVPRTRCWWALR*
Ga0126383_113986581	3300010398	Tropical Forest Soil	MRISMTAYAVGLAALLAVSPALAQDAQGRAKQYRRAPLRIEVSPYGRLYRQCTDWYVTEHRATGDTIV
Ga0137392_100188456	3300011269	Vadose Zone Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLQRRAPLRIEVTPSGRLYRQCTDWHVIEHRPTGDTVAPRTRCWWALR*
Ga0137392_107868822	3300011269	Vadose Zone Soil	MRISATAYAAGLAVLLAMVPPALAQDAQGRAVSHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRARCWWALQR*
Ga0137392_114497071	3300011269	Vadose Zone Soil	MRIWITGCALGLAVLLSASPLAFGQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHFIEHRLTGDTVVPRTRCW
Ga0137393_102343393	3300011271	Vadose Zone Soil	MRIWITGCASGLAVLLRALPLAFAQDAPDRAKLQRRSPLRIEVTPSGRLYRQCTDWHVIEHRLTGDTVVPRTRCWWALR*
Ga0137393_115595332	3300011271	Vadose Zone Soil	ITGCAVGLAVLLRASPLAFAQDAPDRARLQRRPPLRLEVTPSGRLYRQCTDWHVIEHRPTGDTVAPRTRCWWALR*
Ga0137388_105048003	3300012189	Vadose Zone Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPAGDTVVPRMRCRWALR*
Ga0137388_113475972	3300012189	Vadose Zone Soil	MTGCALGLAVLLGAPPLAFAQDSPDRARLHRRAPLRIEVTPSGRLYRQCTDWHVIERRPSGD
Ga0137362_100823243	3300012205	Vadose Zone Soil	MRIWITGCAVGLAVLLGASPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0137362_100838844	3300012205	Vadose Zone Soil	MRKWITGCACGLAVLLGALPLAFAQAAPDRATLQRRPPLRIEVTPSGRLYRQCTDWHLIEHRPSGDTVVPRTRCWWALR*
Ga0137360_102534823	3300012361	Vadose Zone Soil	MRIWITGCAVGLAVLLGASPLAFAQDAPDRARLQRRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0137361_102882002	3300012362	Vadose Zone Soil	MRKWITGCACGLAVLLGALPLAFAQAAPDRATLQRRPPLRIEVTPSGRLYRQCSDWHIIEHRPSGDTVVPRPRCWWALQ*
Ga0137390_112629741	3300012363	Vadose Zone Soil	MTACAVAFVVLAASVPPPALAQDAQGRAKLLRRAPLRIEVAPSGRLYRQCTDWYVIEHRFTGDTIVPRMRCWWALQR*
Ga0137396_101234843	3300012918	Vadose Zone Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLARRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0137394_101119281	3300012922	Vadose Zone Soil	LGLAVLLGALPLAFAQDAPDRARLQHRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0137419_106552682	3300012925	Vadose Zone Soil	MRIWITGCALGLAVLLGALPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR*
Ga0126375_101813002	3300012948	Tropical Forest Soil	MRISTAAYLAGLVVLLASPPGQAQDAQGQAKLHRRAPLRIDVGPYARLYRQCTDWHVIEHRATGDTVVPRSRCWWALR*
Ga0126369_121801532	3300012971	Tropical Forest Soil	MTGCALGLAAVLGATLASAQDQADRARLQRRAPLRVDVAPAGRLYRQCTDWHVIEHRPTGDTVVPRSWCRWAVR*
Ga0187802_101664222	3300017822	Freshwater Sediment	MRIGMTGCALGLAVLLGGPLPASAQDSPDRAKPHRRAPLRVDVTPSGRLYRQCADWHVIEHRATGDTVAPRTRCWWAVR
Ga0187783_100151195	3300017970	Tropical Peatland	MRIWIKGCALGLAVVLGAPPLAFPQDAPDRARLQRRAPLRIEVTPSARLYRQCTDWHVIEHRPTGDTVVPRTRCWWALR
Ga0187782_107808831	3300017975	Tropical Peatland	MGMLWHDHGRGQTMRIWVTCCVLGLVVLLGASPPALTQDAPDRARLQRRAPLRIEVTPSARLYRQCTDWHVIEHRPTGDTVVPRTRCWWALR
Ga0187816_103257641	3300017995	Freshwater Sediment	MRIGMTGCALGLAVLLGGPLPALAQDSPDRAKLHRRAPLRVDVTPSGRLYRQCADWHVIEHRATGDT
Ga0187765_104120502	3300018060	Tropical Peatland	MTGCVLGLAALIAGPPQALAQDSPDRTKLHRRAPLRVVVTPSSGRLYRQCTDWHVIEHRATGDTIVPRMQCRWALR
Ga0179592_103023932	3300020199	Vadose Zone Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLARRAPLRIEVTPSGRLYRQCTDWHVIEHRPT
Ga0210395_113075492	3300020582	Soil	RIATRISMTVHATGLALLLASAAPPALAQDTQTRATHRRPPLRIEVTPPGRLYRQCTDWYVIEHRATGDTVVPRSRCVWAVR
Ga0210401_111141072	3300020583	Soil	MRISTTAFVAGLAMVLASAATPAPAQDAQTQVRATPHRRAPLRIEVTPPGRLYRQCVDSPVIEHRATGDTVVPRSRCWWAVR
Ga0210406_100558025	3300021168	Soil	MRIWMTGCALGLAVSLAGSPLALAQDSADRARVSRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRTRCWWALQR
Ga0210400_108118861	3300021170	Soil	MRIWMTGCALGLAVSFAGSALALAQDTADRARVSRRTPLRIDVTPSARLYRQCTDWHVIEHRATGNTVVPLTRCWWALQR
Ga0210408_105805421	3300021178	Soil	MRISATAYAAGLAVLLAMLPPALAQDAQGRTISHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRARCWWAVQR
Ga0210389_103787023	3300021404	Soil	MRTVMMGCALVFAALLSGPPAVRAQDPPDRAKLHRRAPLRVEVTPSRLYRQCTDWLVVEHRATGDTIVPRMQCRWAVR
Ga0210394_112192822	3300021420	Soil	MRLSRTAFAAGLAMVLASVAAPASAQDAQTQGRVTPRRRAPLRIEVTPPGRLYRQCIDSPVIEHRVTGDTVVPRSRCWWAVR
Ga0210384_119094902	3300021432	Soil	MRISATAYAVGFALLLAVLPPALAQDAQGRTISHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRARCWWAVQR
Ga0210398_108819871	3300021477	Soil	MRIATRVSMTVHATGLALLLASAAPPALAQDTQTRATHRRPPLRIEVTPPGRLYRQCTDWYVIEHRATGDTVVPRSRCVWAVR
Ga0210410_117753692	3300021479	Soil	TTAFVAGLAMVLASAATPAPAQDAQTQVRATPHRRAPLRIEVTPPGRLYRQCVDSPVIEHRATGDTVVPRSRCWWAVR
Ga0213851_14757292	3300021860	Watersheds	MRISMTAYGVGLAMLLASEAPPALAQDGQGRVKLQRRAPLRVDVRPSGRLYRQCTDWHVIEHRATGDTVVPRSRCVWALQR
Ga0213853_100741653	3300021861	Watersheds	MRISMTTYGVGLAVLLASVAPPALAQDTQGRAKLHRRVPLRIEVAPTGRLYRQCTDWHVIEHRATGDTIVPRARCWWASR
Ga0213853_101408292	3300021861	Watersheds	MRKSITAYGVGFAVLLASVTPPALAQDTQARATVHRRAPLRIEVAPAGRLYRQCTDWHVIEHRATGDTVVPRAKCRWALR
Ga0213853_110526442	3300021861	Watersheds	MRTLMTTCAVGLAMLLASAAPPALAQDGQGRLKLQRRAPLRVDVRPSGRLYRQCTDWHVIEHRATGDTVVPRSRCVWALQR
Ga0213853_111794553	3300021861	Watersheds	MRISMTAYGVGLAMLLASEAPPALAQDTQGRAKLHRRAPLRIEVAPAGRLYRQCTDWHVIEHRATGDTVVPRAKCWWALR
Ga0242664_10523701	3300022527	Soil	TMRTVMMGCALVFAALLSGPPAVRAQDPPDRAKLHRRAPLRVEVTPSRLYRQCTDWLVVEHRATGDTIVPRMQCRWAVR
Ga0209131_10185536	3300026320	Grasslands Soil	LTMRIWITGCASGLAVLLGALPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR
Ga0257162_10163072	3300026340	Soil	MRIWITGSALGLAVLLGASLAFAQDAPDRAGLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRLTGDTVVPRTRCWWALR
Ga0257151_10190042	3300026341	Soil	MRISATAYAAGLAVLLAVLPPALAQDAQGRPISHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRTRCWWAVQR
Ga0257170_10373482	3300026351	Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLARRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGDAVVPRTRCWWALR
Ga0257163_10063893	3300026359	Soil	MRISATAYAAGLAVLLAVLPPALAQDAQGRAVSHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRMGCWWALRR
Ga0257173_10406382	3300026360	Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLQRRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGDAVVPRTRCWWAL
Ga0257178_10312001	3300026446	Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLQRRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGD
Ga0257172_10029643	3300026482	Soil	MRIWITGSALGLAVLLGASLAFAQDAPDRAGLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRLTGDTVVPR
Ga0257153_10049353	3300026490	Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRARLQRRAPLRIEVTPSGRLYRQCTDWHVIEHRPSGDAVVPRTRCWWALR
Ga0209179_10271153	3300027512	Vadose Zone Soil	MRIWITGCASGLAVLLGALPLAFAQDAPDRARLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR
Ga0209388_11205732	3300027655	Vadose Zone Soil	MRIWITGCALGLAVLLGALPLAFAQDAPDRARLQHRPPLRIEVTPSGRLYRQCTDWHVIEHRPSGDTVVPRTRCWWALR
Ga0209180_104903511	3300027846	Vadose Zone Soil	MRIWITGCAVGLAVLLSASPLAFAQDAPDRAKLQRRPPLRIEVTPSGRLYRQCTDWHVIEHRLTGDTV
Ga0209517_104905412	3300027854	Peatlands Soil	MRISMTAFAAGLAMVLATAATPAPAQDAQTQGRVTPHRRAPLRIEVTPPGRLYRQCIDSPVIEHRVTGDTVVPRSRCWWAVR
Ga0209068_104172682	3300027894	Watersheds	MRTLMTTCAVGLAMLLASTAPPALAQDGQGRVKLQRLAPLRVDVRPSGRLYRQCTDWHVIEHRATGDTVVPRSRCVWALQR
Ga0209067_103801571	3300027898	Watersheds	MRIPMTVYGVGLAMLLASVTPPALAQDTQGRVKQLRHAPLRIEVAPSGRLYRQCADRHVIEYRATGDTVVPRTRCWWALR
Ga0209415_100318516	3300027905	Peatlands Soil	MVLATAATPAPAQDAQTQGRVTPHRRAPLRIEVTPPGRLYRQCIDSPVIEHRVTGDTVVPRSRCWWAVR
Ga0209583_101929622	3300027910	Watersheds	MRISMTTCAVGLAVLLASIAPPALAQDSQGRVKLQRRAPLRVDVRPSGRLYRQCTDWHVIEHRATGDTVVPRTRCWWALR
Ga0209069_100133844	3300027915	Watersheds	MRTLMTTCAVGLAMLLASTAPPALAQDGQGRVKLQRRAPLRVDVRPSGRLYRQCTDWHVIEHRATGDTVVPRSRCVWALQR
Ga0209526_100925023	3300028047	Forest Soil	MRISATAYAAGLAVLLAVVPPALAQDAQGRPISHRRAPLRIEVTPSARLNRQCTDWHVIEHRATGDTVVPRARCWWALQR
Ga0209526_107175362	3300028047	Forest Soil	DMRISATAYAAGLALLLAVLPPALAQDAPGRAISHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRARCWWAVQR
Ga0316363_104278011	3300030659	Peatlands Soil	MRISMTAFAAGLAMVLATAATPAPAQDAQTQGRVTPHRRAPLRIEVTPPGRLYRQCIDSPVIEHRVTGDTVVPRSRC
Ga0310038_104497461	3300030707	Peatlands Soil	MVLATAATPAPAQDAQTQGRVTPHRRAPLRIEVTPPGRLYRQCIDSPVIEHRVTGD
Ga0307476_106027922	3300031715	Hardwood Forest Soil	MRTLMMGSALVLTALLGGPHAVLAQNAQNSPDRAKLHRRAPLRVEVTPSRLYRQCTDWLVVEHRATGDTIVPRMQCRWAVQ
Ga0307474_115819011	3300031718	Hardwood Forest Soil	SRGRTMRISTTAFAAGLAMMLASAATPAPAQDAPAQDAQAQVRVTPHRRAPLRIEVTPPGRLYRQCVDSPVIEHRVTGDTVVPRSRCWWAVR
Ga0307469_101911202	3300031720	Hardwood Forest Soil	MRISTAAYLAGLVVLLASPPGQAQDAQGQAKLHRRAPLRIEVTPSARLYRQCTDWHVIEHRATGDTVVPRSRCWWALR
Ga0318547_107635661	3300031781	Soil	MRISLTAYAVGLAVLLASVPALAQDVQGRAAQRRAPLRIEVAPYGRLYRQCADWHVIEH
Ga0310916_110244822	3300031942	Soil	MRISLTAYAVGLAVLLASVPALAQDVQGRAAQRRAPLRIEVAPYGRLYRQCADWHVIEHRAT
Ga0307470_104046192	3300032174	Hardwood Forest Soil	MRIWMTGCALGLAVSFAASSLALAQDTADRARVSRRTPLRIDVTPSARLYRQCTDWHVIEHRATGNTIVPLTRCWWALQR
Ga0306920_1016239231	3300032261	Soil	ALGLAAVLGGATLAIAQDQTDTPRLHRRAPLRVEVAPAGRLYRQCADWHVIEHRATGDTVVPRTWCRWAVR
Ga0310914_114294032	3300033289	Soil	MRISLTAYAVGLAVLLASVPALAQDVQGRAAQRRAPLRIEVAPYGRLYRQCADWHVIEHRATGDTVVPRSRCWWALR
Ga0370515_0335493_76_318	3300034163	Untreated Peat Soil	MRKSTATYALGLAVLLASVALPALAQDAPGRAKPHRRAPLRIEVTPSAGLYRQCTDWYVIEHRPTGDTVVPRIRCWWALR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089386

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences