Metagenome / Metatranscriptome Family F089376

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089376
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	59 residues
Representative Sequence	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLQEQASADCACLTKPE
Number of Associated Samples	75
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	71.30 %
% of genes near scaffold ends (potentially truncated)	25.69 %
% of genes from short scaffolds (< 2000 bps)	78.90 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.71

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.294 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (21.101 % of family members)
Environment Ontology (ENVO)	Unclassified (44.037 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 57.47% β-sheet: 0.00% Coil/Unstructured: 42.53%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.71
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.71
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
a.25.1.1: Ferritin	d1z6om1	1z6o	0.88833
a.25.1.0: automated matches	d7o6ea_	7o6e	0.88036
f.13.1.1: Bacteriorhodopsin-like	d1xioa_	1xio	0.87979
f.13.1.1: Bacteriorhodopsin-like	d6s6ca_	6s6c	0.87745
a.25.1.1: Ferritin	d1nfva_	1nfv	0.87308

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF05099	TerB	45.87
PF04392	ABC_sub_bind	5.50
PF00839	Cys_rich_FGFR	2.75
PF13336	AcetylCoA_hyd_C	1.83
PF03401	TctC	0.92
PF10098	DUF2336	0.92
PF00196	GerE	0.92
PF02390	Methyltransf_4	0.92
PF02837	Glyco_hydro_2_N	0.92
PF10262	Rdx	0.92
PF01464	SLT	0.92
PF00230	MIP	0.92
PF11799	IMS_C	0.92
PF00144	Beta-lactamase	0.92
PF06792	UPF0261	0.92
PF13416	SBP_bac_8	0.92
PF12697	Abhydrolase_6	0.92
PF17200	sCache_2	0.92
PF03734	YkuD	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3793	Tellurite resistance protein TerB	Inorganic ion transport and metabolism [P]	45.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	5.50
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.92
COG0220	tRNA G46 N7-methylase TrmB	Translation, ribosomal structure and biogenesis [J]	0.92
COG0580	Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family)	Carbohydrate transport and metabolism [G]	0.92
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.92
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.92
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	0.92
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.92
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.92
COG3250	Beta-galactosidase/beta-glucuronidase	Carbohydrate transport and metabolism [G]	0.92
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	0.92
COG5441	ATP-binding helicase-inhibiting domain, Tm-1/UPF0261 family	Defense mechanisms [V]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.29 %
Unclassified	root	N/A	47.71 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.29 %
Unclassified	root	N/A	47.71 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.29 %
Unclassified	root	N/A	47.71 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	47.71 %
Unclassified	root	N/A	47.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.71 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	44.95 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.71 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	39.45 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.71 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	35.78 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %
Reyranellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.71 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	16.51 %
Tardiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	11.01 %
Reyranella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella	0.92 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.71 %
Tardiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	11.01 %
unclassified Reyranella	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella	0.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.92 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.71 %
Tardiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	11.01 %
Reyranella sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	0.92 %
Bradyrhizobium elkanii	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	0.92 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090015\|GPICI_8684151	All Organisms → cellular organisms → Bacteria	2157	Open in IMG/M
2162886013\|SwBSRL2_contig_2859597	Not Available	966	Open in IMG/M
2228664021\|ICCgaii200_c0692398	Not Available	734	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1001935	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2057	Open in IMG/M
3300000816\|AF_2010_repII_A10DRAFT_1015309	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	806	Open in IMG/M
3300000955\|JGI1027J12803_102056929	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1189	Open in IMG/M
3300003911\|JGI25405J52794_10025032	Not Available	1222	Open in IMG/M
3300004463\|Ga0063356_106113215	Not Available	516	Open in IMG/M
3300004479\|Ga0062595_101208066	Not Available	672	Open in IMG/M
3300005168\|Ga0066809_10021560	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1308	Open in IMG/M
3300005294\|Ga0065705_10110903	All Organisms → cellular organisms → Bacteria → Proteobacteria	4317	Open in IMG/M
3300005294\|Ga0065705_10701075	Not Available	652	Open in IMG/M
3300005332\|Ga0066388_100226148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2502	Open in IMG/M
3300005332\|Ga0066388_100375516	All Organisms → cellular organisms → Bacteria → Proteobacteria	2068	Open in IMG/M
3300005332\|Ga0066388_100399595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2020	Open in IMG/M
3300005332\|Ga0066388_100486255	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1872	Open in IMG/M
3300005332\|Ga0066388_100741522	Not Available	1583	Open in IMG/M
3300005332\|Ga0066388_100933233	Not Available	1441	Open in IMG/M
3300005332\|Ga0066388_101006307	Not Available	1397	Open in IMG/M
3300005332\|Ga0066388_101549751	Not Available	1162	Open in IMG/M
3300005332\|Ga0066388_103196847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	837	Open in IMG/M
3300005332\|Ga0066388_103864447	Not Available	764	Open in IMG/M
3300005332\|Ga0066388_106486837	Not Available	590	Open in IMG/M
3300005332\|Ga0066388_107030675	Not Available	566	Open in IMG/M
3300005332\|Ga0066388_107373425	Not Available	552	Open in IMG/M
3300005437\|Ga0070710_10232368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1178	Open in IMG/M
3300005439\|Ga0070711_100503691	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	999	Open in IMG/M
3300005713\|Ga0066905_100870006	Not Available	786	Open in IMG/M
3300005713\|Ga0066905_101469534	Not Available	619	Open in IMG/M
3300005764\|Ga0066903_100003979	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	12299	Open in IMG/M
3300005764\|Ga0066903_100379110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2310	Open in IMG/M
3300005764\|Ga0066903_102407670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1018	Open in IMG/M
3300005764\|Ga0066903_105882798	Not Available	643	Open in IMG/M
3300005937\|Ga0081455_10013233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium elkanii	8172	Open in IMG/M
3300005937\|Ga0081455_10247110	Not Available	1307	Open in IMG/M
3300005937\|Ga0081455_10263981	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1253	Open in IMG/M
3300006049\|Ga0075417_10002207	All Organisms → cellular organisms → Bacteria	5769	Open in IMG/M
3300006172\|Ga0075018_10319393	Not Available	771	Open in IMG/M
3300006175\|Ga0070712_100258718	All Organisms → cellular organisms → Bacteria	1394	Open in IMG/M
3300006580\|Ga0074049_11089865	Not Available	554	Open in IMG/M
3300006847\|Ga0075431_101328167	Not Available	680	Open in IMG/M
3300009098\|Ga0105245_11256655	Not Available	789	Open in IMG/M
3300009147\|Ga0114129_10044330	All Organisms → cellular organisms → Bacteria → Proteobacteria	6257	Open in IMG/M
3300010043\|Ga0126380_10072651	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1959	Open in IMG/M
3300010043\|Ga0126380_10080692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1882	Open in IMG/M
3300010043\|Ga0126380_10112867	Not Available	1660	Open in IMG/M
3300010043\|Ga0126380_11326080	Not Available	628	Open in IMG/M
3300010043\|Ga0126380_12285182	Not Available	502	Open in IMG/M
3300010046\|Ga0126384_10553699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1000	Open in IMG/M
3300010047\|Ga0126382_10040596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2643	Open in IMG/M
3300010048\|Ga0126373_12221873	Not Available	610	Open in IMG/M
3300010358\|Ga0126370_11796448	Not Available	593	Open in IMG/M
3300010358\|Ga0126370_12595296	Not Available	506	Open in IMG/M
3300010359\|Ga0126376_10664789	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	996	Open in IMG/M
3300010359\|Ga0126376_11897859	Not Available	635	Open in IMG/M
3300010361\|Ga0126378_10397761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1490	Open in IMG/M
3300010376\|Ga0126381_103228560	Not Available	644	Open in IMG/M
3300011000\|Ga0138513_100034527	Not Available	744	Open in IMG/M
3300012948\|Ga0126375_11296155	Not Available	612	Open in IMG/M
3300012948\|Ga0126375_12065487	Not Available	505	Open in IMG/M
3300012971\|Ga0126369_10013855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	6296	Open in IMG/M
3300012971\|Ga0126369_10294474	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1621	Open in IMG/M
3300012984\|Ga0164309_11027046	Not Available	681	Open in IMG/M
3300012985\|Ga0164308_10776044	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	833	Open in IMG/M
3300015371\|Ga0132258_10772543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Reyranellaceae → Reyranella → unclassified Reyranella → Reyranella sp.	2421	Open in IMG/M
3300015371\|Ga0132258_10909350	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2222	Open in IMG/M
3300015371\|Ga0132258_11676816	Not Available	1603	Open in IMG/M
3300016319\|Ga0182033_10410298	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1147	Open in IMG/M
3300016371\|Ga0182034_10094201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2126	Open in IMG/M
3300017947\|Ga0187785_10116436	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1087	Open in IMG/M
3300017974\|Ga0187777_10372852	Not Available	984	Open in IMG/M
3300018060\|Ga0187765_10951851	Not Available	585	Open in IMG/M
3300018067\|Ga0184611_1133352	All Organisms → cellular organisms → Bacteria	875	Open in IMG/M
3300018072\|Ga0184635_10003704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4786	Open in IMG/M
3300021560\|Ga0126371_10064103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3553	Open in IMG/M
3300021560\|Ga0126371_10161621	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2310	Open in IMG/M
3300021560\|Ga0126371_10183859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2176	Open in IMG/M
3300021560\|Ga0126371_10505209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1357	Open in IMG/M
3300022694\|Ga0222623_10082630	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1246	Open in IMG/M
3300027326\|Ga0209731_1056202	Not Available	600	Open in IMG/M
3300027560\|Ga0207981_1075966	Not Available	617	Open in IMG/M
3300027902\|Ga0209048_10441185	Not Available	887	Open in IMG/M
3300027915\|Ga0209069_10982199	Not Available	517	Open in IMG/M
3300030848\|Ga0075388_11336353	Not Available	714	Open in IMG/M
3300030916\|Ga0075386_10019543	Not Available	904	Open in IMG/M
3300030990\|Ga0308178_1129779	Not Available	562	Open in IMG/M
3300031128\|Ga0170823_13082538	Not Available	718	Open in IMG/M
3300031170\|Ga0307498_10365024	Not Available	558	Open in IMG/M
3300031199\|Ga0307495_10036410	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	938	Open in IMG/M
3300031231\|Ga0170824_110642758	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1388	Open in IMG/M
3300031446\|Ga0170820_15308950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1213	Open in IMG/M
3300031469\|Ga0170819_14376740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1398	Open in IMG/M
3300031474\|Ga0170818_107413710	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1281	Open in IMG/M
3300031538\|Ga0310888_10985389	Not Available	529	Open in IMG/M
3300031545\|Ga0318541_10064642	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1906	Open in IMG/M
3300031562\|Ga0310886_10756680	Not Available	609	Open in IMG/M
3300031879\|Ga0306919_10003855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7704	Open in IMG/M
3300031910\|Ga0306923_10474163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1418	Open in IMG/M
3300031945\|Ga0310913_10695530	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	719	Open in IMG/M
3300031946\|Ga0310910_10245618	All Organisms → cellular organisms → Bacteria	1399	Open in IMG/M
3300032000\|Ga0310903_10533070	Not Available	617	Open in IMG/M
3300032042\|Ga0318545_10163490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	793	Open in IMG/M
3300032065\|Ga0318513_10310233	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	767	Open in IMG/M
3300032205\|Ga0307472_100759009	Not Available	880	Open in IMG/M
3300033290\|Ga0318519_10003900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5343	Open in IMG/M
3300033433\|Ga0326726_10262237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	1612	Open in IMG/M
3300034090\|Ga0326723_0288901	Not Available	735	Open in IMG/M
3300034090\|Ga0326723_0297854	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Tardiphaga	723	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	88.99%
Host-Associated	Host-Associated	11.01%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.49%
Plants	Host-Associated → Plants	11.01%
Aquatic	Environmental → Aquatic	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	79.82%
Rhizoplane	Host-Associated → Plants → Rhizoplane	7.34%
Sediment	Environmental → Aquatic → Sediment	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.67%
Peat	Environmental → Terrestrial → Peat	2.75%
Freshwater	Environmental → Aquatic → Freshwater	0.92%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.96%
Loam	Environmental → Terrestrial → Soil → Loam	21.10%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.59%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.75%
Lentic	Environmental → Aquatic → Freshwater → Lentic	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	31.19%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	18.35%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	18.35%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.75%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.75%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	0.92%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	21.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	17.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	7.34%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.67%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	2.75%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.83%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.92%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090015	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
2162886013	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
2228664021	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000816	Forest soil microbial communities from Amazon forest - 2010 replicate II A10	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006580	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLPC (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011000	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t6i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018060	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MG	Environmental	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300027326	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_RefH0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027902	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies - CRP12 CR (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300030848	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030916	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 EcM (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030990	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_149 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031199	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 7_S	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032000	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPICI_01771380	2088090015	Soil	MSREDELLKLARLFRSQARLTHDRLAKQALRKFGDHYQNEAKKLHAQASADCASPTKPE
SwBSRL2_0088.00002940	2162886013	Switchgrass Rhizosphere	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGNHYQNEAKKLQEQASADCACLTKPE
ICCgaii200_06923981	2228664021	Soil	ILMSREDELLKLARLFRSQARLTHDRLAKQALRKFGDHYQNEAKKLHAQASADCASPTKP
AF_2010_repII_A10DRAFT_10019353	3300000816	Forest Soil	MSRKDELLKLAQLFRSQARLTLDRPAKQALRKLGDHYQNEAKKLQEQASADCACLTKPE*
AF_2010_repII_A10DRAFT_10153093	3300000816	Forest Soil	LLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLEEASADCTSLATRE*
JGI1027J12803_1020569291	3300000955	Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLQEQASADSASLAKLE*
JGI25405J52794_100250322	3300003911	Tabebuia Heterophylla Rhizosphere	MSREDELLKLARLFRSQARLTHDRLAKQALRKLGDQYQNEAKKLQGQASADCASLIKPE*
Ga0063356_1061132151	3300004463	Arabidopsis Thaliana Rhizosphere	MSREDELLKLARLFRSQARLTHDRLAKQALRKFGDHYHNESKKLHGQAAADCASPPKPE*
Ga0062595_1012080661	3300004479	Soil	KLAQLFHSQARLTLDRPAKQALRKLGNHYQNEAKKLQEQASADCACLTKPE*
Ga0066809_100215602	3300005168	Soil	MSRKDELLKLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAKRLHGQVSVDCDDLTKSE*
Ga0065705_101109033	3300005294	Switchgrass Rhizosphere	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGNHYQNEAKKLQEQASADCACLTKPE*
Ga0065705_107010752	3300005294	Switchgrass Rhizosphere	MSREDELLKLARLFRSQARLTHDRLAKQALRKFGDHYQNEAKKLHGQASADCASPTKPE*
Ga0066388_1002261481	3300005332	Tropical Forest Soil	ATFKFLMSRKDELLKLARLFRSQARLTQGRLAKQALRTLGDHYQSEAKKLQAQASADCASPTKPE*
Ga0066388_1003755163	3300005332	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLQEQASADCACLTKPE*
Ga0066388_1003995952	3300005332	Tropical Forest Soil	MSRTDELLKLAHLFHSQARRTLDRQAKKALRKIGDDYQKKAKTLQEQVSADLTKSD*
Ga0066388_1004862553	3300005332	Tropical Forest Soil	MSRKDELLKLARLFRLQARLTQDRPAKQTLRKLGDHYQNKAKKLQGEALADCASLTKPE*
Ga0066388_1007415221	3300005332	Tropical Forest Soil	MSRKDELLKLARLCHSQARLTQDRPAKQVLRKLGDHYQNEAKKLQEQALADCVSLTKPD*
Ga0066388_1009332332	3300005332	Tropical Forest Soil	MSRRDELLKLARLFHSRARLTQSRPARQALRKLGDHYQNEAKKVQGQGSADRANPTKPE*
Ga0066388_1010063072	3300005332	Tropical Forest Soil	MSREDELLKLARLFRSQARLIHGRLAKQALRKLGDHYQNEAKKLHGQASANCASPTKPQ*
Ga0066388_1015497512	3300005332	Tropical Forest Soil	TLMSRKDELLKLAQLFRSQARLTQDRSAKQALRKLGDRYENEAKKLPEQVAADQPD*
Ga0066388_1031968471	3300005332	Tropical Forest Soil	MSRKDELLKLAQLFRSQARLTQDRPAKQALRKLGDHYENEAKKLQAQVLADCTNLTKPE*
Ga0066388_1038644472	3300005332	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYENEAKKLQKQASADCASLTKPE*
Ga0066388_1064868371	3300005332	Tropical Forest Soil	MSRRDELLKLAQLYRRQARLIQDRLARQALQKLGTYYESEAKKLQGQASPGCTSLTKPQ*
Ga0066388_1070306751	3300005332	Tropical Forest Soil	MSRRDELLKLARLIRLQARLTQDRPAKQVLRKLGDQYHNEAKKLQQEVSADCIGLTKPE*
Ga0066388_1073734251	3300005332	Tropical Forest Soil	MSRKDELLKLARLFRSQARRTQDRSTKQTLRKLGDRYQNEAQKLQEQTLPDFAGLNEPE*
Ga0070710_102323681	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MSRKDELFKLSQLFHSQARRTLDRPAKRVLRRLGDHYHDEAKKLQGQVSAEYSGLTKSK*
Ga0070711_1005036911	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSRKDELLKLAQLFHLQARLTLDRAAKQALRKLGDRYQNEAKKLQAPVSADCSSLTKSE*
Ga0066905_1008700061	3300005713	Tropical Forest Soil	MSREDELLKLARLFRSQARLTTDRLAKQALRKLGDQYQNEAKKLQGQASAECASVMKPE*
Ga0066905_1014695341	3300005713	Tropical Forest Soil	MSREDELLKLAQLFRSQARLTHDRLAKQALRKLGDQYQNEAKKLQGQASADCA
Ga0066903_10000397911	3300005764	Tropical Forest Soil	MSRKDELLKLARLFRSQARLTQGRLAKQALRTLGDHYQSEAKKLQAQASADCASPTKPE*
Ga0066903_1003791103	3300005764	Tropical Forest Soil	MTNDCDLEILMSRKDELLKLAQLFRLQARLTKDRPTKRTLRKLGDHYQDEVKKLQEQVPVDCTGLSKPE*
Ga0066903_1024076701	3300005764	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLILDRPAKKALRKLGDHYKNEAKKLQTVSPDPTESN*
Ga0066903_1058827981	3300005764	Tropical Forest Soil	MSRKDELLKLAHLFHSQARLTLDRPAKQALRKLGDHYQKEAKKLEEASADCTSLATRE*
Ga0081455_100132333	3300005937	Tabebuia Heterophylla Rhizosphere	MSREDELLKLARLFRSQARLTHDRLAKQALRKLGDQYQNEAKKLQGQASADCASLIEPE*
Ga0081455_102471102	3300005937	Tabebuia Heterophylla Rhizosphere	LRNCDLEILMSREDELLKLARLFRSQARLIHDRLAKQALRKLGDHYQSEAKKLQQASADCASLTKPE*
Ga0081455_102639813	3300005937	Tabebuia Heterophylla Rhizosphere	LMSREDELLKLARLFRSQARLTHDRLAKQALRKLGDQYQNEAKKLQGQASADCASLIKPE
Ga0075417_100022078	3300006049	Populus Rhizosphere	MSREDELLKLARLFRSQARLTHDRLAKQALRKFGDHYQNEAKKLHAQASADCASPTKPE*
Ga0075018_103193932	3300006172	Watersheds	MSRNDELLKLAQLFHSQARLTRDRSAKQALRKLGDHYQNEAKELQGQVSANCASLTKSE*
Ga0070712_1002587182	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	DELLKLAQLFHSQARLTLDRPAKQALRKLGNHYQNEAKKLQEQASADCACLTKPE*
Ga0074049_110898652	3300006580	Soil	MSRKDELLKLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAKRLHGQVSADCDDLTKSE*
Ga0075431_1013281672	3300006847	Populus Rhizosphere	MSREDELLKLARLFRSQARLTHDRLAKQALRKLGDQYQNEAKKLQGQASAECAGLIKPE*
Ga0105245_112566551	3300009098	Miscanthus Rhizosphere	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLCNHYQNEAKKLQEQASADCACLTKPE*
Ga0114129_1004433010	3300009147	Populus Rhizosphere	MSREDELLKLARLFRSQARLTHDRLAKQALRKFGDHYQNEAKELHAQASADCASPTKPE*
Ga0126380_100726512	3300010043	Tropical Forest Soil	MSREDELLKLARLFRSQARLIHDRLAKQALRKLGDHYQSEAKKLQQASADCASLTKPE*
Ga0126380_100806923	3300010043	Tropical Forest Soil	MSRKDELFKLARLFRSQAGLTQGRLAKQALRTLGDHYQSEAKKLQAQASADCASPTKPE*
Ga0126380_101128672	3300010043	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDRCQNEAKKLQEQASADCASLAKPE*
Ga0126380_113260802	3300010043	Tropical Forest Soil	MSRRDELLKLAQLYRRQARLIQDRLARQALQKLGTHYESEAKKLQGQVSPGCTSLNKPQ*
Ga0126380_122851821	3300010043	Tropical Forest Soil	LLKLARLFRLQARLTQDRPVKQTLRKLGDHYQNKAKKLQGEALADCASLTKPE*
Ga0126384_105536992	3300010046	Tropical Forest Soil	MSRKDELLKLAHLFHSQARRTLDRQAKKALRKIGDDYQKKAKTLQEQVSADLSKSE*
Ga0126382_100405965	3300010047	Tropical Forest Soil	MSREDELLKLARLFRSQARLIHGRLAKQALRKLGDHYQNEAKKLHGQASANCASPTKPE*
Ga0126373_122218731	3300010048	Tropical Forest Soil	MSRKDELLKLAHLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLEEASA
Ga0126370_117964482	3300010358	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLEEASADCTSLANRE*
Ga0126370_125952961	3300010358	Tropical Forest Soil	LMSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDRCQNEAKKLQEQASADCASLAKPE
Ga0126376_106647892	3300010359	Tropical Forest Soil	MSRKDELLKLAHLFHSQARRTLDRQAKKALRKIGDDYQKKAKTLQEQVLADLAKSD*
Ga0126376_118978591	3300010359	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDRCQNEAKKLQEQASAD
Ga0126372_103748381	3300010360	Tropical Forest Soil	MSRKDELLKLARLFRSQARLTQGRLAKQALRTLGDHYQSEAKKLQAQ
Ga0126378_103977612	3300010361	Tropical Forest Soil	TNDCDLEILMSRKDELLKLAQLFRLQARLTKDRLTKRTLRKLGDHYQDEVKKLQEQIPVDCTGLSKPE*
Ga0126381_1032285601	3300010376	Tropical Forest Soil	MTNDCDLEILMSRKDELLKLAQLFRLQARLTKDRLTKRTLRKLGDHYQDEVKKLQEQIPVDCTGLSKPE*
Ga0138513_1000345272	3300011000	Soil	MSRKDELLKLAQLFRSQARLTQDRPAKQALRKLGDHYENEAKKLQGQVSADCTSLTEPE*
Ga0126375_112961552	3300012948	Tropical Forest Soil	MSRRDELLKLARLIRLQARLTQDRPAKQVLRKLGDQYHNEAKKLQQEVSADCIGLTK
Ga0126375_120654871	3300012948	Tropical Forest Soil	DRGIATYRFIMSRKDELLKLARLCHSQARLTQDRPAKQVLRKLGDHYQNEAKKLQEQALADCVSLTKPD*
Ga0126369_100138553	3300012971	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLILDQPAKKALRKLGDHYKNEAKKLQTVSPDPTESN*
Ga0126369_102944742	3300012971	Tropical Forest Soil	MANDCDLEILMSRKDELLKLAQLFRLQARLTKDRPTKRTLRKLGDHYQDEVKKLQEQIPVDCTGLSKPE*
Ga0164309_110270461	3300012984	Soil	MSRKDELFKLSQLFHSQARRTLDRPAKRVLRRLGDHYHDEAKKLQGQVSAECSSLTKSK*
Ga0164308_107760441	3300012985	Soil	MSRKDELFKLSQLFHSQARLTLDRSAKRVLRRLGDHHHDEAKKLQGQAS
Ga0132258_107725433	3300015371	Arabidopsis Rhizosphere	MSRKDELLKLAHLFHSQARRTLDRRAKKALRKIGDDYQNKAKTLQEQVSADLTKSE*
Ga0132258_109093504	3300015371	Arabidopsis Rhizosphere	MSRKDELLKLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAKRLHGQVSADCDDLTESE*
Ga0132258_116768161	3300015371	Arabidopsis Rhizosphere	MSRKDELFKLSQLFHSQARLTLDRSAKRVLRRLGDHYHDEAKKLQGQVSAECSSLTKSK*
Ga0182033_104102982	3300016319	Soil	MTNDCDLEILMSRKDELLKLAQLFQLQARLTKDRPTKRTLRKLGDHYQDEVKKLQEQVPVECTGLSKPE
Ga0182034_100942011	3300016371	Soil	MTNDCDLEILMSRKDEVLKLAQLFRLQARLTKDRPTKRTLRKLGDHYQDEVKKLQEQVPVECTGLSKPE
Ga0187785_101164362	3300017947	Tropical Peatland	MSRKDELLKLAQLFHSQARLILDRPAKKALRKLGDHYKNEAKKLQTVSPDPTKSN
Ga0187777_103728523	3300017974	Tropical Peatland	MSRRDELLKLAQLCRRQARLIQDRLARQALQKLGTYYESEAKKLQGQVSPDCTSLTKPQ
Ga0187765_109518511	3300018060	Tropical Peatland	MSRRDELLKLAQLYRRQARLIQDRLARQALQKLGTYYESEAKKLQGQVSPDCTSLTKPQ
Ga0184611_11333521	3300018067	Groundwater Sediment	MSRKDELLKLAQLFRSQARLTQDRPAKQALRKLGDHYENEAKKLQGQVSADCTSLTEPE
Ga0184635_100037042	3300018072	Groundwater Sediment	MSRKDELLKLAQLFRSQARLTQDRPAKQALRKLGDHFENEAKKLQGQVSADCTSLTEPE
Ga0126371_100641031	3300021560	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLILDRPAKKALRKLGDHYKNEAKKLQTVSPDPTESN
Ga0126371_101616211	3300021560	Tropical Forest Soil	MSRKDELLKLARLFRSQARLTQGRLAKQALRTLGDHYQSEAKKLQAQASADCASPTKPE
Ga0126371_101838591	3300021560	Tropical Forest Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLEEASADCTSLATRE
Ga0126371_105052092	3300021560	Tropical Forest Soil	MTNDCDLEILMSRKDELLKLAQLFRLQARLTKDRLTKRTLRKLGDHYQDEVKKLQEQVPVDCTGLSKPE
Ga0222623_100826302	3300022694	Groundwater Sediment	MSRKDELFKLAQLFRSQARLTQDRPAKQALRKLGDHYENEAKKPQGQVSEDCSSLTKPE
Ga0209731_10562022	3300027326	Forest Soil	MSRKDELLKLAHLFHSQARLTRDRHAKKMLQKIGDDYRNKAKTLQEQVSADLTKSE
Ga0207981_10759662	3300027560	Soil	MSRKDELLKLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAKRLHGQVSVDCDDLTKSE
Ga0209048_104411852	3300027902	Freshwater Lake Sediment	MSRKDELLKLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAEKLQGQVSADCASLIKSK
Ga0209069_109821992	3300027915	Watersheds	MSRKDELLKLAQLFHLQARLTLDRAAKQALRKLGDRYQNEAKKLQAPVSADCSGLTKSE
Ga0075388_113363531	3300030848	Soil	MSRKDELLKLAQLFHLQARLTLDRAAKQALRKLGDRYQNEAKKLQGQISANCARLTKSERPTFRDGDLES
Ga0075386_100195431	3300030916	Soil	MSRKDELLKLAQLFHLQARLTLDRAAKQALRKLGDRYQNEAKKLQAPVSADCPSLTKSE
Ga0308178_11297791	3300030990	Soil	GILMSRKDELLKLAQLFHSQARITLDLSAKQVLRKLGDHYQNEAKKLQAQVSEDCASLTKSE
Ga0170823_130825381	3300031128	Forest Soil	MSRKDELLKLAQLFHLHARLTLDRAAKQALRKLGDRYQNEAKKLQAPVSADCSSLTKSE
Ga0307498_103650242	3300031170	Soil	MSRKDELLKLAQLFHSQARLTLDRSAKQALRELGDHYQNEAKKLQGQVSADSASLTKSE
Ga0307495_100364102	3300031199	Soil	MSRKDELLKLAQLLHSQARLTLDRSAKQVLRKLGDHYQNEAKKPQGQVSADSASLTKSE
Ga0170824_1106427582	3300031231	Forest Soil	MSRNDELLKLAQLFHSQARLTRDRSAKQALRKLGDRYQNEAKELQGQVSANCASLTKSE
Ga0170820_153089503	3300031446	Forest Soil	MSRNDELLKLAQLFHSQARLTRDRSAKQALRKLGDHYQNEAKKLQGQISANCASLTKSERPTFRDGDLESTFG
Ga0170819_143767401	3300031469	Forest Soil	LMSRKDELLKLAQLFHLQARLTLDRAAKQALRKLGDRYQNEAKKLQAPVSADCPSLTKSE
Ga0170818_1074137103	3300031474	Forest Soil	MSRNDELLKLAQLFHSQARLTRDRSAKQALRKLGDHYQNEAKELQGQVSANCASLTKSE
Ga0310888_109853892	3300031538	Soil	KDELLKLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAKRLHGQVSVDCDDLTKSE
Ga0318541_100646422	3300031545	Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLEEQASADCTSLATRE
Ga0310886_107566802	3300031562	Soil	ELLKLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAKRLHGQVLVDCDDLTKSE
Ga0306919_100038559	3300031879	Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKLGDHYQNEAKKLEEQASADCTSLATR
Ga0306923_104741633	3300031910	Soil	MTNDCDLEILMSRKDELLKLAQLFRLQARLTKDRPTKRTLRKLGDHYQDEVKKLQEQVPVECTGLSKPE
Ga0310913_106955301	3300031945	Soil	MTNDCDLEILMSRKDELLKLAQLFRLQARLTKDRPTKRTLRKLGDHYQDEVKKLQEQVPVECTG
Ga0310910_102456183	3300031946	Soil	MTNDCDLEILMSRKDGLLKLAQLFQLQARLTKDRPTKRTLRKLGDHYQDEVKKLQEQVPVECTGLSKPE
Ga0310903_105330701	3300032000	Soil	KLAQLFHSQARLTLDRSAKQALRKLGDHYQNEAKRLHGQVSADCDDLTKSE
Ga0318545_101634901	3300032042	Soil	MSRKDELLKLAQLFHSRARLTLDRPAKQALRKLGDHYQNEAKKLEEQASADCTSLATRE
Ga0318513_103102332	3300032065	Soil	MSRKDELLKLAQLFHSRARLTLDRPAKQALRKLGDHCQNEAKKLEEQASADCTSLATRE
Ga0307472_1007590092	3300032205	Hardwood Forest Soil	MSRKDELFKLSQLFHSQARRTLDRPAKRVLRRLGDHYHDEAKKLQGQVSAECSSLTKSK
Ga0318519_100039007	3300033290	Soil	MSRKDELLKLAQLFHSRARLTLDRPAKQALRKLGDHYQNEAKKLEEQASADCT
Ga0326726_102622372	3300033433	Peat Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKRGDHYQNEAKKLQGQVSADCTSLTKSE
Ga0326723_0288901_349_528	3300034090	Peat Soil	MSRKNELLKLAQLFHSQARLTLDRPAKQALRKLGDRYQNEAKKLQGQVLADCASLTKSE
Ga0326723_0297854_6_185	3300034090	Peat Soil	MSRKDELLKLAQLFHSQARLTLDRPAKQALRKRGDHYQNEAKKLQGQVSADCTSQTKSE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089376

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences