| Basic Information | |
|---|---|
| Family ID | F089374 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 109 |
| Average Sequence Length | 47 residues |
| Representative Sequence | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSS |
| Number of Associated Samples | 89 |
| Number of Associated Scaffolds | 109 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 41.67 % |
| % of genes near scaffold ends (potentially truncated) | 97.25 % |
| % of genes from short scaffolds (< 2000 bps) | 94.50 % |
| Associated GOLD sequencing projects | 86 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.58 |
| Hidden Markov Model |
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| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (72.477 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.431 % of family members) |
| Environment Ontology (ENVO) | Unclassified (36.697 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Host-associated → Plant → Plant rhizosphere (47.706 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 10.67% β-sheet: 32.00% Coil/Unstructured: 57.33% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.58 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 109 Family Scaffolds |
|---|---|---|
| PF00989 | PAS | 3.67 |
| PF04392 | ABC_sub_bind | 3.67 |
| PF13545 | HTH_Crp_2 | 0.92 |
| PF00027 | cNMP_binding | 0.92 |
| PF00313 | CSD | 0.92 |
| PF00190 | Cupin_1 | 0.92 |
| PF00501 | AMP-binding | 0.92 |
| PF02696 | SelO | 0.92 |
| PF07568 | HisKA_2 | 0.92 |
| PF00043 | GST_C | 0.92 |
| PF13188 | PAS_8 | 0.92 |
| PF07369 | DUF1488 | 0.92 |
| PF13581 | HATPase_c_2 | 0.92 |
| PF02798 | GST_N | 0.92 |
| PF00892 | EamA | 0.92 |
| PF00072 | Response_reg | 0.92 |
| PF03979 | Sigma70_r1_1 | 0.92 |
| COG ID | Name | Functional Category | % Frequency in 109 Family Scaffolds |
|---|---|---|---|
| COG2984 | ABC-type uncharacterized transport system, periplasmic component | General function prediction only [R] | 3.67 |
| COG0397 | Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O) | Posttranslational modification, protein turnover, chaperones [O] | 0.92 |
| COG0435 | Glutathionyl-hydroquinone reductase | Energy production and conversion [C] | 0.92 |
| COG0568 | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) | Transcription [K] | 0.92 |
| COG0625 | Glutathione S-transferase | Posttranslational modification, protein turnover, chaperones [O] | 0.92 |
| COG3920 | Two-component sensor histidine kinase, HisKA and HATPase domains | Signal transduction mechanisms [T] | 0.92 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 72.48 % |
| All Organisms | root | All Organisms | 27.52 % |
| Visualization |
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| Powered by ApexCharts |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 17.43% |
| Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 10.09% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 6.42% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 4.59% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 4.59% |
| Natural And Restored Wetlands | Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands | 3.67% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere | 3.67% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 3.67% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 3.67% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 2.75% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere | 2.75% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 2.75% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere | 2.75% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil | 1.83% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 1.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 1.83% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.83% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere | 1.83% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.83% |
| Rhizosphere Soil | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil | 1.83% |
| Arabidopsis Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere | 1.83% |
| Soil | Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil | 0.92% |
| Salt Marsh Sediment | Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment | 0.92% |
| Groundwater Sediment | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment | 0.92% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.92% |
| Grass Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil | 0.92% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere | 0.92% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.92% |
| Natural And Restored Wetlands | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands | 0.92% |
| Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 0.92% |
| Switchgrass Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere | 0.92% |
| Arabidopsis Thaliana Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere | 0.92% |
| Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.92% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.92% |
| Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.92% |
| Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere | 0.92% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 2189573004 | Grass soil microbial communities from Rothamsted Park, UK - FG2 (Nitrogen) | Environmental | Open in IMG/M |
| 3300000363 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000787 | Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil | Environmental | Open in IMG/M |
| 3300000881 | Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil | Environmental | Open in IMG/M |
| 3300000891 | Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil | Environmental | Open in IMG/M |
| 3300003994 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Browns_ThreeSqA_D2 | Environmental | Open in IMG/M |
| 3300004463 | Combined assembly of Arabidopsis thaliana microbial communities | Host-Associated | Open in IMG/M |
| 3300005162 | Soil and rhizosphere microbial communities from Laval, Canada - mgLAB | Environmental | Open in IMG/M |
| 3300005168 | Soil and rhizosphere microbial communities from Laval, Canada - mgLPC | Environmental | Open in IMG/M |
| 3300005205 | Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D2 | Environmental | Open in IMG/M |
| 3300005218 | Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D2 | Environmental | Open in IMG/M |
| 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Host-Associated | Open in IMG/M |
| 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Host-Associated | Open in IMG/M |
| 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Environmental | Open in IMG/M |
| 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Host-Associated | Open in IMG/M |
| 3300005713 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2) | Environmental | Open in IMG/M |
| 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Host-Associated | Open in IMG/M |
| 3300006049 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 | Host-Associated | Open in IMG/M |
| 3300006172 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014 | Environmental | Open in IMG/M |
| 3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
| 3300006852 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 | Host-Associated | Open in IMG/M |
| 3300006854 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4 | Host-Associated | Open in IMG/M |
| 3300006903 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5 | Host-Associated | Open in IMG/M |
| 3300006904 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3 | Host-Associated | Open in IMG/M |
| 3300006914 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Host-Associated | Open in IMG/M |
| 3300006954 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control | Environmental | Open in IMG/M |
| 3300009011 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG | Host-Associated | Open in IMG/M |
| 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
| 3300009156 | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2) | Host-Associated | Open in IMG/M |
| 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Host-Associated | Open in IMG/M |
| 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Host-Associated | Open in IMG/M |
| 3300010154 | Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
| 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Host-Associated | Open in IMG/M |
| 3300010396 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2 | Environmental | Open in IMG/M |
| 3300010397 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4 | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010403 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3 | Environmental | Open in IMG/M |
| 3300011119 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG | Host-Associated | Open in IMG/M |
| 3300012497 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.2.old.240510 | Host-Associated | Open in IMG/M |
| 3300012500 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610 | Host-Associated | Open in IMG/M |
| 3300012509 | Unplanted soil (control) microbial communities from North Carolina - M.Soil.8.old.080610_6 | Environmental | Open in IMG/M |
| 3300012510 | Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610 | Host-Associated | Open in IMG/M |
| 3300012882 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 | Environmental | Open in IMG/M |
| 3300012884 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 | Environmental | Open in IMG/M |
| 3300012911 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2 | Environmental | Open in IMG/M |
| 3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
| 3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
| 3300012985 | Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG | Environmental | Open in IMG/M |
| 3300012989 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG | Environmental | Open in IMG/M |
| 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Host-Associated | Open in IMG/M |
| 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Host-Associated | Open in IMG/M |
| 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Host-Associated | Open in IMG/M |
| 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Host-Associated | Open in IMG/M |
| 3300014308 | Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_TuleC_D1 | Environmental | Open in IMG/M |
| 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Host-Associated | Open in IMG/M |
| 3300015372 | Soil combined assembly | Host-Associated | Open in IMG/M |
| 3300015373 | Combined assembly of cpr5 rhizosphere | Host-Associated | Open in IMG/M |
| 3300015374 | Col-0 rhizosphere combined assembly | Host-Associated | Open in IMG/M |
| 3300018028 | Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex | Environmental | Open in IMG/M |
| 3300019361 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2) | Environmental | Open in IMG/M |
| 3300021344 | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2a2 | Environmental | Open in IMG/M |
| 3300023057 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6 | Environmental | Open in IMG/M |
| 3300023064 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S001-104B-6 | Environmental | Open in IMG/M |
| 3300025900 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300025930 | Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes) | Environmental | Open in IMG/M |
| 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) | Host-Associated | Open in IMG/M |
| 3300026752 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4w-11 (SPAdes) | Environmental | Open in IMG/M |
| 3300026818 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G05A2-11 (SPAdes) | Environmental | Open in IMG/M |
| 3300026940 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-12 (SPAdes) | Environmental | Open in IMG/M |
| 3300027390 | Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A1-11 (SPAdes) | Environmental | Open in IMG/M |
| 3300027437 | Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G05K2-12 (SPAdes) | Environmental | Open in IMG/M |
| 3300028784 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121 | Environmental | Open in IMG/M |
| 3300028793 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_159 | Environmental | Open in IMG/M |
| 3300028814 | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183 | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031652 | Salt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1601-40 | Environmental | Open in IMG/M |
| 3300031943 | Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2 | Environmental | Open in IMG/M |
| 3300033412 | Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC | Environmental | Open in IMG/M |
| 3300034681 | Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_121 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300034819 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 | Host-Associated | Open in IMG/M |
| 3300034820 | Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_2 | Host-Associated | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
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| Protein ID | Sample Taxon ID | Habitat | Sequence |
| FG2_02439140 | 2189573004 | Grass Soil | MTDILDIARSSQEEPKLTVRKASHAAVWSVWAVLEGIPPEEIFEGSS |
| ICChiseqgaiiFebDRAFT_110004691 | 3300000363 | Soil | MTDILDNARVSGEEPKLIIRKASHAPIWSVWAVLEGTPSEEIFEGSSEEGALSWI |
| JGI11643J11755_117799661 | 3300000787 | Soil | MTDILDNARVSGEEPKLIIRKASHAPIWSVWAVLEGTPSEEIFEGSSEEGALSWINS |
| JGI10215J12807_12492621 | 3300000881 | Soil | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASS |
| JGI10215J12807_14611101 | 3300000881 | Soil | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASS |
| JGI10214J12806_105022131 | 3300000891 | Soil | MTDILDNAPVSGEEPTLIVRKASHAPIWSVWAVLEG |
| Ga0055435_100629251 | 3300003994 | Natural And Restored Wetlands | MTDILDTPHVSQDEPKLIVRKAPHAPVWSVWAVLEGIPSEEIFEGSSEEEASSWIN |
| Ga0063356_1057324442 | 3300004463 | Arabidopsis Thaliana Rhizosphere | MNDILDNAGVSGGEPKLIVRKASYAPIWSVWAVLEGTPSEEGNLRRVF* |
| Ga0066814_100404612 | 3300005162 | Soil | MSQEEPKLIVRKASHAPVWSVWAVLDGTPSEEIFEGSSEE |
| Ga0066809_100393292 | 3300005168 | Soil | MTNILDSARASDEGPRLIVRKASHAPIWSVWAVLEGTPSEEIFE |
| Ga0068999_101381832 | 3300005205 | Natural And Restored Wetlands | MIDILDIARSSQEEPKFIVRKAPHAAVWSVWAVPEGIPPE |
| Ga0068996_100357561 | 3300005218 | Natural And Restored Wetlands | MIDILDIARSSQEEPKFIVRKAPHAAVWSVWAVPEGIPPEEIFEGS |
| Ga0068996_100394391 | 3300005218 | Natural And Restored Wetlands | MANILENSPVDQQEPKLIIRKAPHAAVWSVWAVLEGTPSEEIFEGASEEE |
| Ga0070670_1003420001 | 3300005331 | Switchgrass Rhizosphere | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWINS |
| Ga0068868_1008630821 | 3300005338 | Miscanthus Rhizosphere | MTDILDIARSSQEEPRLIVRKAPHAAVWSVWAVLEGVPPEEIFEGSSEEEASSW |
| Ga0070711_1004631121 | 3300005439 | Corn, Switchgrass And Miscanthus Rhizosphere | MTDILDNAPRTQEEPKLIIRRVSHAPVWSVWATLEGTPSEE |
| Ga0070665_1013670492 | 3300005548 | Switchgrass Rhizosphere | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEG |
| Ga0066905_1004210042 | 3300005713 | Tropical Forest Soil | MTDILDTAHVSQEEPKLIVRKAPHAPVWSVWAVLEGIPSEEIFEGSSE |
| Ga0068860_1016756421 | 3300005843 | Switchgrass Rhizosphere | MTNILDNAHAGGEEPKLVVRKASHAPIWSVWAVLEGTPSEEIFEGS |
| Ga0075417_103121012 | 3300006049 | Populus Rhizosphere | MTDILDSAPRTQEDPKLIIRRVSHAPVWSVWATLEGTPSEEIFEGASEE |
| Ga0075018_104603651 | 3300006172 | Watersheds | MIDILDIARTSQEEPNLIVRKAPHAAVWSVWAVLEGIP |
| Ga0079220_108369991 | 3300006806 | Agricultural Soil | MTDILDIARSSQEEPRLIVRKAPHAAVWSVWAVLEGVPPEEIFEGSSEEEASSWINT |
| Ga0075433_107474792 | 3300006852 | Populus Rhizosphere | MTDILDNAHVSQDAPKLIVRKAPHAPVWSVWAVLEGIPSEEIFEGSSEEEASSW |
| Ga0075433_112373491 | 3300006852 | Populus Rhizosphere | MTDILDSAPRTQEDPKLIIRRVSHAPVWSVWATLEGTPSEEI |
| Ga0075425_1010795293 | 3300006854 | Populus Rhizosphere | MTDILDNAPRTQEEPKLIVRRASHAPVWSVWATLEGTPSEEIFEGASEEEA |
| Ga0075425_1024340322 | 3300006854 | Populus Rhizosphere | MTDILDNAPRTHEEPKLIIRRVSHAPVWSVWATLEGTPSEEIFEGASEEEAM |
| Ga0075426_106332041 | 3300006903 | Populus Rhizosphere | MTDILDTGRVSQEEPKLIVRKAPHAPVWSVWAVLEGIP |
| Ga0075426_107774742 | 3300006903 | Populus Rhizosphere | MTDILDSAPRTQEDPKLIIRRVSHAPVWSVWATLEGTPSEEIFEGASE |
| Ga0075426_109655961 | 3300006903 | Populus Rhizosphere | MTDILDNARVNGEEPKLIVRKASRAPIWSVWAMLEGTPSEEIFE |
| Ga0075424_1012003292 | 3300006904 | Populus Rhizosphere | MTDILDNAPRTHEEPKLIIRRVSHAPVWSVWATLEGTPSEEIFEG |
| Ga0075436_1009841791 | 3300006914 | Populus Rhizosphere | MTDILDNAPRTQEEPKLIIRRVSHAPVWSVWATLEGTPSEEIFEGASEEEAM |
| Ga0079219_111646833 | 3300006954 | Agricultural Soil | MTDILDNARVSGDEPKLIVRKASHASIWSVWAVLE |
| Ga0105251_101843092 | 3300009011 | Switchgrass Rhizosphere | MTDILDNARVSDEEPKLIVRKASHAPIWSVRAVLEGTPSEEIFEGSSEEDASSWINS |
| Ga0105251_102518451 | 3300009011 | Switchgrass Rhizosphere | MTNILDNAHAGGEEPKLVVRKASHAPIWSVWAVLEGTPS |
| Ga0105245_118008111 | 3300009098 | Miscanthus Rhizosphere | MTDILNTPHVSQEEPKLIVRKASHAPVWSVWAVLDDT |
| Ga0111538_133486101 | 3300009156 | Populus Rhizosphere | MTDILESAPRTQEDPKLIIRRVSHTPVWSVWATLEGTPSEEIFEG |
| Ga0105248_115340001 | 3300009177 | Switchgrass Rhizosphere | MTNILDSARASHEGPRLIVRKASHAPIWSVWAVLDGTPSEEIFEGSS |
| Ga0105238_110759872 | 3300009551 | Corn Rhizosphere | MTDILDIARSSQEEPRLIVRKAPHAAVWSVWAVLEGVPPEEIFE |
| Ga0127503_110703352 | 3300010154 | Soil | MTDILDNAPRTQEEPKLIIRRASHAPVWSVWATLEGTPSEELFEGASEEEAMSWINT |
| Ga0134128_113531182 | 3300010373 | Terrestrial Soil | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEGSSE |
| Ga0134128_114938121 | 3300010373 | Terrestrial Soil | MTDILDAARASGEEPKLVVRKASHAQIWSVWAVLEGSPSEEIFEGSSEEEA |
| Ga0105239_120734481 | 3300010375 | Corn Rhizosphere | MTDILDIARSSQEEPRLIVRKAPHAAVWSVWAVLEGVPPEEIFEGSSEEEASSWIN |
| Ga0134126_119016153 | 3300010396 | Terrestrial Soil | MSDILDNAPKSPEEPQLIIRQPLHAPVWSVWAILEGTPSEEIFE |
| Ga0134124_104509313 | 3300010397 | Terrestrial Soil | MTDILDNARVNGEEPKLIVRKASHAPIWSVRAVLEGTP |
| Ga0134121_105301121 | 3300010401 | Terrestrial Soil | MTDILDIARSSQEEPKLIIRKAPHAAVWSVWAVLEGIPPEEIFEGS |
| Ga0134121_111202601 | 3300010401 | Terrestrial Soil | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEGSSEE |
| Ga0134123_112980472 | 3300010403 | Terrestrial Soil | MANILENVPGDQEEPKLIVRKAPHAAVWSVWAVLEGTPSEEIFEGSSEEEAVGECPLMAQ |
| Ga0105246_107360411 | 3300011119 | Miscanthus Rhizosphere | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEGS |
| Ga0105246_108862192 | 3300011119 | Miscanthus Rhizosphere | MTDILDIARSSQEEPRLIVRKAPHAAVWSVWAVLE |
| Ga0157319_10374921 | 3300012497 | Arabidopsis Rhizosphere | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEI |
| Ga0157314_10080041 | 3300012500 | Arabidopsis Rhizosphere | MTDILDNARVSGEEPKLVVRKASHAPIWSVWAVLEGTPSEEIFEGSSEDD |
| Ga0157334_10015872 | 3300012509 | Soil | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSW |
| Ga0157316_10345201 | 3300012510 | Arabidopsis Rhizosphere | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDAS |
| Ga0157304_10049231 | 3300012882 | Soil | MTNILDSARASDEGPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDAS |
| Ga0157300_10289541 | 3300012884 | Soil | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWIN |
| Ga0157301_100624701 | 3300012911 | Soil | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEE |
| Ga0164303_115039452 | 3300012957 | Soil | MSDILETACVSSGEPKLIVRKAPHASIWSVWAVLAGIPSEEIFEG |
| Ga0164301_100013221 | 3300012960 | Soil | MTDILDTPHMSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEI |
| Ga0164301_102489341 | 3300012960 | Soil | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTP |
| Ga0164308_1000329713 | 3300012985 | Soil | MTDILDTPHMSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEGASEEE |
| Ga0164308_113712551 | 3300012985 | Soil | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIF |
| Ga0164308_120350101 | 3300012985 | Soil | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEGASEEE |
| Ga0164305_109802992 | 3300012989 | Soil | MSDILDTAHVSQDELKLIVRKASHAPVWSVWAVLEGNPSEEIFEGSSEEEASSW |
| Ga0157374_109640691 | 3300013296 | Miscanthus Rhizosphere | MTDILNTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEGSSE |
| Ga0157378_114827671 | 3300013297 | Miscanthus Rhizosphere | MTDILDTPHVSQEEPKLIVRKAPHAPVWSVWAVLDDTPSEEIF |
| Ga0163162_119840691 | 3300013306 | Switchgrass Rhizosphere | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSE |
| Ga0157372_106262381 | 3300013307 | Corn Rhizosphere | MNDILDNVSGGEPKLIVRKASYAPIWSVWAVLEGTPSEEGNL |
| Ga0075354_11692871 | 3300014308 | Natural And Restored Wetlands | MANILENSPVDQQEPKLIIRKAPHAAVWSVWAVLEGTPSE |
| Ga0157379_105494191 | 3300014968 | Switchgrass Rhizosphere | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEGSSEEEA |
| Ga0132256_1002872751 | 3300015372 | Arabidopsis Rhizosphere | MTDILDDARVSGEEPKLIVRKASHAPVWSVWAVLEGTPSEEIFEGSSEED |
| Ga0132256_1019114111 | 3300015372 | Arabidopsis Rhizosphere | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTPS |
| Ga0132257_1007377163 | 3300015373 | Arabidopsis Rhizosphere | MTDIVDNARVNGEEPKLIVRKASHAQIWSVWAILEGTPSEEIFEGASDEDAS |
| Ga0132257_1035166892 | 3300015373 | Arabidopsis Rhizosphere | MTDILDNAPRTQEEPKLIIRRVSQAPVWSVWATLEGTPSEEIFEGASEEEAMSWINT |
| Ga0132255_1012505381 | 3300015374 | Arabidopsis Rhizosphere | MTDILDTPHMSQEEPKLIVRKASHAPVWSVWAVLDDTPSEEIFEG |
| Ga0132255_1027189572 | 3300015374 | Arabidopsis Rhizosphere | MTDILDIARSSQEEPKLIVRKAPHAAVWSVWAVLEG |
| Ga0184608_102180521 | 3300018028 | Groundwater Sediment | MADILDNAPRTQEEPKLIIRRVSHAPVWSVWATLEGTPSEEIFEGASEEEAMS |
| Ga0173482_100222151 | 3300019361 | Soil | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEI |
| Ga0193719_101511312 | 3300021344 | Soil | MTDILDIARSSQEEPKLTVRKASHAAVWSVWAVLEGIPPEEIFEGSSEEEASSWIN |
| Ga0247797_10263331 | 3300023057 | Soil | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWINS |
| Ga0247801_10070872 | 3300023064 | Soil | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSS |
| Ga0207710_103921061 | 3300025900 | Switchgrass Rhizosphere | MTDILDTPHVSQEEPKLIVRKASHAPVWSVWAVLDDTP |
| Ga0207671_110719611 | 3300025914 | Corn Rhizosphere | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWIN |
| Ga0207671_114325782 | 3300025914 | Corn Rhizosphere | MTDILDIARSSQEAPKLIVRKAPHAAVWSVWAVLEGIPPEEIFEGS |
| Ga0207663_111525532 | 3300025916 | Corn, Switchgrass And Miscanthus Rhizosphere | MTDILDAARASGEEPKLVVRKASHAQIWSVWAVLEGSPSEEIFEGSSEEEASS |
| Ga0207662_107896081 | 3300025918 | Switchgrass Rhizosphere | MSDILDTAHVSQDELKLIVRKASHAPVWSVWAVLEGTPSEEIFEGSSEE |
| Ga0207701_109280921 | 3300025930 | Corn, Switchgrass And Miscanthus Rhizosphere | MTNILDNAHAGGEEPKLVVRKASHAPIWSVWAVLE |
| Ga0207706_102000643 | 3300025933 | Corn Rhizosphere | MTDILDNARVNGEEPKLIVRKASHAAIWSVWAVLE |
| Ga0207658_118449091 | 3300025986 | Switchgrass Rhizosphere | MTDVLDIARSSQEEPRLIVRKAPHAAVWSVWAVLEGVPPEEIF |
| Ga0207703_107089701 | 3300026035 | Switchgrass Rhizosphere | MTNILDSARASDEGPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASS |
| Ga0207639_101722432 | 3300026041 | Corn Rhizosphere | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWI |
| Ga0207639_114862271 | 3300026041 | Corn Rhizosphere | MTDILDNARVNGEEPKLIVRKASHAPIWSVRAVLEGTPSEEIFEGASEEDASN |
| Ga0207676_103775451 | 3300026095 | Switchgrass Rhizosphere | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGFSEE |
| Ga0207473_1009711 | 3300026752 | Soil | MTNILDSARASDEGPRLIVRKASHAPIWSVWAVLEGTPSEEI |
| Ga0207634_1044591 | 3300026818 | Soil | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGTSEVDASSWIDT |
| Ga0207521_1022171 | 3300026940 | Soil | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSE |
| Ga0207435_1042701 | 3300027390 | Soil | MTNILDSARASDEGPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDASSWIN |
| Ga0207476_1029261 | 3300027437 | Soil | MTNILDSARASHEGPRLIVRKASHAPIWSVWAVLEGTPSEEIFE |
| Ga0307282_101581902 | 3300028784 | Soil | MSDILDTARVSCEEPKLIVRKAPHASIWSVWAVLAGIPSEEIFEGSS |
| Ga0307299_100410621 | 3300028793 | Soil | TARVGREEPKLIVRKAPHAAVWSVWAVLEGIPSEEIFEGSSEEQGQYRRSSVA |
| Ga0307299_102285532 | 3300028793 | Soil | MTDILDIARSSQEEPKLTVRKASHAAVWSVWAVLEGIPPEEIFEGSSEEE |
| Ga0307302_103135231 | 3300028814 | Soil | MSNILDTAHMSQEEPKLIVRKAPHAPVWSVWAVLEGT |
| Ga0170824_1215433791 | 3300031231 | Forest Soil | MPDILDNAPKSPEEPKLIIRQPLHTPVWSVWATLEGTPSEEIFEGASEEEA |
| Ga0315553_100620801 | 3300031652 | Salt Marsh Sediment | MTDILENAPIRQNEPKLIVRQASHAKIWSVWATLEGTASEEIFEGVSEEEALNWI |
| Ga0310885_100171183 | 3300031943 | Soil | MTNILDSARASDEEPRLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEED |
| Ga0310885_102663421 | 3300031943 | Soil | MTDILDVARSSREEPKLIVRKSPHAAVWSVWAVLEGIPPEEIFEGSS |
| Ga0310810_100079677 | 3300033412 | Soil | MNDILDNAGVSGGEPKLIVRKASYAPIWSVWAVLEGTPSEEGNLRRVF |
| Ga0370546_091598_367_516 | 3300034681 | Soil | MTDILDNAPRTQEEPKLIIRRVSHAPVWSVWATLEGTPSEEIFEGASEEE |
| Ga0373958_0163362_2_154 | 3300034819 | Rhizosphere Soil | MTDILDNARVSDEEPKLIVRKASHAPIWSVWAVLEGTPSEEIFEGSSEEDA |
| Ga0373959_0131346_2_130 | 3300034820 | Rhizosphere Soil | MTNILDNAHAGGEEPKLVVRKASHAPIWSVWAVLEGTPSEEIF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |