Metagenome / Metatranscriptome Family F089358

Basic Information
Family ID	F089358
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	68 residues
Representative Sequence	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPPVEAAE
Number of Associated Samples	99
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	78.70 %
% of genes near scaffold ends (potentially truncated)	33.94 %
% of genes from short scaffolds (< 2000 bps)	91.74 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.68

Most Common Taxonomy
Group	Unclassified (70.642 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.349 % of family members)
Environment Ontology (ENVO)	Unclassified (31.193 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (50.459 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.17% β-sheet: 0.00% Coil/Unstructured: 45.83%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF07221	GlcNAc_2-epim	5.50
PF02798	GST_N	1.83
PF03663	Glyco_hydro_76	0.92
PF13932	GIDA_C	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2942	Mannose or cellobiose epimerase, N-acyl-D-glucosamine 2-epimerase family	Carbohydrate transport and metabolism [G]	5.50
COG4833	Predicted alpha-1,6-mannanase, GH76 family	Carbohydrate transport and metabolism [G]	0.92

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
All Organisms	root	All Organisms	29.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
cellular organisms	root	All Organisms → cellular organisms	29.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.36 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	28.44 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	22.02 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17.43 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.67 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.75 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	3.67 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2.75 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.67 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.83 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.64 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	3.67 %
Bradyrhizobium lablabi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1.83 %
Bradyrhizobium sp. WSM4349	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM4349	0.92 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459016\|G1P06HT01BB86R	Not Available	512	Open in IMG/M
3300000044\|ARSoilOldRDRAFT_c024581	Not Available	542	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_104843782	Not Available	554	Open in IMG/M
3300004013\|Ga0055465_10091671	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. WSM4349	895	Open in IMG/M
3300004114\|Ga0062593_101000216	All Organisms → cellular organisms → Bacteria → Proteobacteria	857	Open in IMG/M
3300004114\|Ga0062593_101543001	Not Available	718	Open in IMG/M
3300004463\|Ga0063356_101577449	Not Available	976	Open in IMG/M
3300005158\|Ga0066816_1010458	Not Available	681	Open in IMG/M
3300005168\|Ga0066809_10121042	Not Available	657	Open in IMG/M
3300005332\|Ga0066388_103970863	Not Available	754	Open in IMG/M
3300005336\|Ga0070680_101780166	Not Available	534	Open in IMG/M
3300005338\|Ga0068868_102204846	Not Available	525	Open in IMG/M
3300005341\|Ga0070691_10533387	Not Available	683	Open in IMG/M
3300005341\|Ga0070691_10781065	Not Available	580	Open in IMG/M
3300005347\|Ga0070668_102087488	Not Available	523	Open in IMG/M
3300005367\|Ga0070667_100756167	Not Available	901	Open in IMG/M
3300005439\|Ga0070711_101194467	Not Available	658	Open in IMG/M
3300005441\|Ga0070700_100473434	Not Available	958	Open in IMG/M
3300005444\|Ga0070694_101298824	Not Available	612	Open in IMG/M
3300005539\|Ga0068853_100544272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1099	Open in IMG/M
3300005539\|Ga0068853_102268215	Not Available	526	Open in IMG/M
3300005718\|Ga0068866_10814036	Not Available	650	Open in IMG/M
3300005719\|Ga0068861_101329039	Not Available	700	Open in IMG/M
3300005719\|Ga0068861_102232317	Not Available	549	Open in IMG/M
3300005844\|Ga0068862_100357871	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1356	Open in IMG/M
3300006172\|Ga0075018_10762588	Not Available	528	Open in IMG/M
3300006572\|Ga0074051_11740390	Not Available	994	Open in IMG/M
3300006844\|Ga0075428_100366641	All Organisms → cellular organisms → Bacteria → Proteobacteria	1545	Open in IMG/M
3300006852\|Ga0075433_10386552	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1235	Open in IMG/M
3300006854\|Ga0075425_100542953	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1338	Open in IMG/M
3300006871\|Ga0075434_102598635	Not Available	507	Open in IMG/M
3300007076\|Ga0075435_101430938	Not Available	606	Open in IMG/M
3300009094\|Ga0111539_11593639	Not Available	757	Open in IMG/M
3300009098\|Ga0105245_11533618	Not Available	717	Open in IMG/M
3300009146\|Ga0105091_10026493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2511	Open in IMG/M
3300009147\|Ga0114129_11086837	Not Available	1002	Open in IMG/M
3300009156\|Ga0111538_11285033	Not Available	924	Open in IMG/M
3300009156\|Ga0111538_11723294	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	789	Open in IMG/M
3300009157\|Ga0105092_10195458	All Organisms → cellular organisms → Bacteria → Proteobacteria	1129	Open in IMG/M
3300009177\|Ga0105248_11760963	Not Available	702	Open in IMG/M
3300009545\|Ga0105237_10973553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300010043\|Ga0126380_10365262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	1057	Open in IMG/M
3300010400\|Ga0134122_10578243	Not Available	1033	Open in IMG/M
3300010401\|Ga0134121_13157933	Not Available	509	Open in IMG/M
3300011119\|Ga0105246_10375548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1173	Open in IMG/M
3300012508\|Ga0157315_1067897	Not Available	518	Open in IMG/M
3300012891\|Ga0157305_10023817	Not Available	1130	Open in IMG/M
3300012916\|Ga0157310_10127995	All Organisms → cellular organisms → Bacteria → Proteobacteria	852	Open in IMG/M
3300012948\|Ga0126375_10474562	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium lablabi	926	Open in IMG/M
3300012951\|Ga0164300_10003585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	4164	Open in IMG/M
3300012951\|Ga0164300_10005064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3728	Open in IMG/M
3300012951\|Ga0164300_10166552	Not Available	1049	Open in IMG/M
3300012955\|Ga0164298_10035179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2290	Open in IMG/M
3300012957\|Ga0164303_10066608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1663	Open in IMG/M
3300012958\|Ga0164299_10141531	All Organisms → cellular organisms → Bacteria → Proteobacteria	1318	Open in IMG/M
3300012961\|Ga0164302_10132597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1438	Open in IMG/M
3300012984\|Ga0164309_10089316	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1914	Open in IMG/M
3300012985\|Ga0164308_10522499	Not Available	997	Open in IMG/M
3300012986\|Ga0164304_10063831	All Organisms → cellular organisms → Bacteria → Proteobacteria	2062	Open in IMG/M
3300012988\|Ga0164306_10687245	Not Available	812	Open in IMG/M
3300012989\|Ga0164305_10022679	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3304	Open in IMG/M
3300013306\|Ga0163162_11205060	Not Available	859	Open in IMG/M
3300013307\|Ga0157372_12862756	Not Available	553	Open in IMG/M
3300014326\|Ga0157380_12442823	Not Available	588	Open in IMG/M
3300014969\|Ga0157376_11118036	Not Available	814	Open in IMG/M
3300014969\|Ga0157376_11314342	Not Available	753	Open in IMG/M
3300015371\|Ga0132258_10981287	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2134	Open in IMG/M
3300015372\|Ga0132256_100616828	Not Available	1199	Open in IMG/M
3300015374\|Ga0132255_100524180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1743	Open in IMG/M
3300017792\|Ga0163161_11200668	Not Available	656	Open in IMG/M
3300018076\|Ga0184609_10196259	Not Available	939	Open in IMG/M
3300018078\|Ga0184612_10144811	Not Available	1243	Open in IMG/M
3300018081\|Ga0184625_10506859	Not Available	608	Open in IMG/M
3300018465\|Ga0190269_11069366	Not Available	618	Open in IMG/M
3300018469\|Ga0190270_13366273	Not Available	507	Open in IMG/M
3300019356\|Ga0173481_10596148	Not Available	580	Open in IMG/M
3300021078\|Ga0210381_10269682	Not Available	609	Open in IMG/M
3300021168\|Ga0210406_10256729	Not Available	1433	Open in IMG/M
3300022534\|Ga0224452_1122335	Not Available	800	Open in IMG/M
3300025900\|Ga0207710_10242661	All Organisms → cellular organisms → Bacteria → Proteobacteria	899	Open in IMG/M
3300025901\|Ga0207688_10722640	Not Available	630	Open in IMG/M
3300025911\|Ga0207654_10776277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	691	Open in IMG/M
3300025914\|Ga0207671_10616839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	864	Open in IMG/M
3300025932\|Ga0207690_11878177	Not Available	500	Open in IMG/M
3300025935\|Ga0207709_11371699	Not Available	585	Open in IMG/M
3300025938\|Ga0207704_10812947	Not Available	781	Open in IMG/M
3300026075\|Ga0207708_11186123	Not Available	667	Open in IMG/M
3300026118\|Ga0207675_100712496	Not Available	1013	Open in IMG/M
3300027577\|Ga0209874_1099026	Not Available	696	Open in IMG/M
3300027682\|Ga0209971_1143214	Not Available	589	Open in IMG/M
3300027907\|Ga0207428_10978346	Not Available	595	Open in IMG/M
3300028379\|Ga0268266_11582540	Not Available	631	Open in IMG/M
3300028587\|Ga0247828_10170633	Not Available	1109	Open in IMG/M
3300031170\|Ga0307498_10039339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1219	Open in IMG/M
3300031198\|Ga0307500_10079639	Not Available	847	Open in IMG/M
3300031226\|Ga0307497_10381977	Not Available	668	Open in IMG/M
3300031538\|Ga0310888_10962200	Not Available	535	Open in IMG/M
3300031547\|Ga0310887_10992522	Not Available	535	Open in IMG/M
3300031562\|Ga0310886_10993324	Not Available	538	Open in IMG/M
3300031720\|Ga0307469_12164830	Not Available	541	Open in IMG/M
3300031854\|Ga0310904_10481818	Not Available	829	Open in IMG/M
3300031944\|Ga0310884_10297284	Not Available	899	Open in IMG/M
3300031949\|Ga0214473_10010079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	11138	Open in IMG/M
3300032013\|Ga0310906_10094148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1625	Open in IMG/M
3300032013\|Ga0310906_10723041	Not Available	697	Open in IMG/M
3300032075\|Ga0310890_10863301	Not Available	720	Open in IMG/M
3300032174\|Ga0307470_11083817	Not Available	643	Open in IMG/M
3300032180\|Ga0307471_103698221	Not Available	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	56.88%
Host-Associated	Host-Associated	42.20%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	48.62%
Plants	Host-Associated → Plants	42.20%
Aquatic	Environmental → Aquatic	8.26%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	48.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	25.69%
Rhizoplane	Host-Associated → Plants → Rhizoplane	16.51%
Sediment	Environmental → Aquatic → Sediment	4.59%
Freshwater	Environmental → Aquatic → Freshwater	2.75%
Marine	Environmental → Aquatic → Marine	0.92%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.37%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.18%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	14.68%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.59%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.75%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Sand	Environmental → Terrestrial → Soil → Sand	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	24.77%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.18%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	14.68%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	8.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.42%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.75%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.35%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	9.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	8.26%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	2.75%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.75%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.75%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.75%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.75%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459016	Litter degradation ZMR2	Engineered	Open in IMG/M
3300000044	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis soil old	Host-Associated	Open in IMG/M
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004013	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailA_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005158	Soil and rhizosphere microbial communities from Laval, Canada - mgHAA	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005367	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005539	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2	Host-Associated	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006572	Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHPB (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009146	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 10-12cm March2015	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009545	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012508	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.2.old.270510	Host-Associated	Open in IMG/M
3300012891	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S148-409B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300018078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_coex	Environmental	Open in IMG/M
3300018081	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b1	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300022534	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_b1	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025901	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes)	Host-Associated	Open in IMG/M
3300025911	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025938	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026075	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027577	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_20_30 (SPAdes)	Environmental	Open in IMG/M
3300027682	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AM (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031226	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 10_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
2ZMR_02015520	2170459016	Switchgrass, Maize And Mischanthus Litter	LLRRTAGGLTHARRCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPRAAE
ARSoilOldRDRAFT_0245812	3300000044	Arabidopsis Rhizosphere	MPGDPKECRQHARRCAELASAATTAEAREQFLSLQQSWMRLAADLENAKAFIAAMDEMDADPPKAAE*
INPhiseqgaiiFebDRAFT_1048437821	3300000364	Soil	MPGDPKECREHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPVEAAE*
Ga0055465_100916711	3300004013	Natural And Restored Wetlands	MPGDPKECREHARRCAELAERATTQEARQQFLSLQMSWVRLAADLDNAKAFIDALAEMDEKPPVKAAE*
Ga0062593_1010002162	3300004114	Soil	MPGDPKQCRQHARPCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPKAAE*
Ga0062593_1015430011	3300004114	Soil	MPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE*
Ga0063356_1015774491	3300004463	Arabidopsis Thaliana Rhizosphere	MPGDPKECRQHARRCAELASAATTPEAREQFLSLEKSWMRLAADLENAKAFIAAMDEMDADPPKAAE*
Ga0063356_1023957621	3300004463	Arabidopsis Thaliana Rhizosphere	MPGDPKECREHAKRCGELARLATTQEARQQFLSLQMSWIRLAADLDNAKAFIDA
Ga0066816_10104582	3300005158	Soil	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSCMRLAADLENAKAFIAALDEIDADPPKAAAGSA*
Ga0066809_101210421	3300005168	Soil	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEIDADPPKAAAGSA*
Ga0066388_1039708631	3300005332	Tropical Forest Soil	MPGDPRECRQHARRCAELASVATSPEARDQFLSLEKSWMRLAADLENAQAFIAAMDEMDADPPSAAE*
Ga0070680_1017801661	3300005336	Corn Rhizosphere	MPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDSASPAKAAD*
Ga0068868_1022048461	3300005338	Miscanthus Rhizosphere	MPGDPKECREHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPKAAE*
Ga0070691_105333871	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	TEEAMPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE*
Ga0070691_107810651	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MPGDPKECREHARRCADLAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE*
Ga0070668_1020874881	3300005347	Switchgrass Rhizosphere	MIRQRAEEIMPGDPKECREHARRCAELAKAATTQEAREQFLSLQMSWIRLAADLDNAKAFID
Ga0070667_1007561671	3300005367	Switchgrass Rhizosphere	MPGDPKECRQHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPVEAAE*
Ga0070711_1011944672	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MSVRQDSAEEPCPGDPKECRQHARCCAELAADLDNAQTLIAALDETDSGPPIKAAE*
Ga0070700_1004734341	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	MPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE*
Ga0070694_1012988241	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	MPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPV
Ga0068853_1005442721	3300005539	Corn Rhizosphere	MPGDPKECRQHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADP
Ga0068853_1022682151	3300005539	Corn Rhizosphere	GRRLLIRQYTAEEETMPGDPKECREHAKRCAELAKAATTPEARDQFLSLQMSWIRLAADLDNAKAFIDALDEMDSASPAKAAD*
Ga0068866_108140361	3300005718	Miscanthus Rhizosphere	MPGDPKECRQHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPKAAE*
Ga0068861_1013290391	3300005719	Switchgrass Rhizosphere	MPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDALDEMDSTPPVKAAE*
Ga0068861_1022323171	3300005719	Switchgrass Rhizosphere	HARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPKAAE*
Ga0068862_1003578712	3300005844	Switchgrass Rhizosphere	TEEAMPGDPKECRQHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPVEAAE*
Ga0075018_107625881	3300006172	Watersheds	MSVRQDSAEEPCPGDPKECRQHARCCAELAAVATTTEAREQFLSLQLSWIRLAADLDNAQTLIAALDEMDSGPPIKAAE*
Ga0074051_117403901	3300006572	Soil	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEIDADPP
Ga0075428_1003666412	3300006844	Populus Rhizosphere	MPGDPKECREHAKRCGELARLATTQEARQQFLSLQMSWIRLAADLDNAKAFIDAMNEMDEEPPIKAAE*
Ga0075433_103865522	3300006852	Populus Rhizosphere	MPGDPKQCRQHARPCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPNAAE*
Ga0075425_1005429532	3300006854	Populus Rhizosphere	DPKQCGQHARPCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPNAAE*
Ga0075434_1025986351	3300006871	Populus Rhizosphere	MPGDPKECRQHARRCAEFASAATTAEAREQFLSLQQSWMRLAADLENAKAFIAAMDEMDADPPKAAE*
Ga0075435_1014309381	3300007076	Populus Rhizosphere	MPGDPKQCRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPNAAE*
Ga0111539_115936391	3300009094	Populus Rhizosphere	MPGDPKQCRQHARPSAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPNAAE*
Ga0105245_115336182	3300009098	Miscanthus Rhizosphere	LESIVIRQRTEEAMPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE*
Ga0105091_100264931	3300009146	Freshwater Sediment	LESIVHPSNLAEEAMPGDPKECREHARRCGELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDAMNEMDEEPPAKAAE*
Ga0114129_110868371	3300009147	Populus Rhizosphere	MPGDPKQCRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPKAAE*
Ga0111538_112850332	3300009156	Populus Rhizosphere	MPGDPKQCRQHARPCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPNAAESLR*
Ga0111538_117232941	3300009156	Populus Rhizosphere	QNGSLESIVHPSNLAEEAMPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE*
Ga0105092_101954581	3300009157	Freshwater Sediment	LESIVHPSNLAEEAMPGDPKECREHARCCAEHAKFATTPEAREQFLALEQSWLRLAGDLESAKAFIDALEEMDSAPPVKAAE*
Ga0105248_117609631	3300009177	Switchgrass Rhizosphere	MPGDPKECREHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPPVEAAE*
Ga0105237_109735531	3300009545	Corn Rhizosphere	TEETMPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE*
Ga0126380_103652621	3300010043	Tropical Forest Soil	GDPRECCQHARRCAELASVATSPEARDQFLSLEKSAADLENAQAFIAAMDEMDADPLSAAE*
Ga0134122_105782431	3300010400	Terrestrial Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPP
Ga0134121_131579331	3300010401	Terrestrial Soil	MPGDPKECREHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADP
Ga0105246_103755482	3300011119	Miscanthus Rhizosphere	MDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE*
Ga0157315_10678971	3300012508	Arabidopsis Rhizosphere	SNLSPSNLTEEAMPGDPKECRQHARRCAELASAATTAEAREQFLSLQQSWMRLAADLENAKAFIAAMDEMDADPPKAAE*
Ga0157305_100238171	3300012891	Soil	MPGDPKECREHAKRCAELAKIATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE*
Ga0157310_101279951	3300012916	Soil	PGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE*
Ga0126375_104745621	3300012948	Tropical Forest Soil	MPGDPRECCQHARRCAELASVATSPEARDQFHSLEKSWMRLAADLENAQAFIAAMDEMDADPLSAAE*
Ga0164300_100035853	3300012951	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDDIDADPPVEAAE*
Ga0164300_100050643	3300012951	Soil	MSVRQDSAEEPCPGDPKECRQHARCCAELAAVATTTEAREQFLSLQLSWIRLAADLDNAQTLIAALDETDSGPPIKAAE*
Ga0164300_101665522	3300012951	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFISLHQSWMRLAADLENAQAFIAALDEIDADPPKAAE*
Ga0164298_100351792	3300012955	Soil	MPGDPKECRQHARRCAELAAVATTPGAREQFLSLQLSWIRLAADLDNAQTLIAALDEMDSGPPIKAAE*
Ga0164303_100666083	3300012957	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDDI
Ga0164299_101415313	3300012958	Soil	MPGDPKECREHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDAEPPVEAAE*
Ga0164302_101325972	3300012961	Soil	MPGDPKECRQHARRCAELAAVATTPGAREQFLSLQLSWIRLAADLDNAQTLIAALDETDSGPPIKAAE*
Ga0164309_100893161	3300012984	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLVADLENAQAFIAALDDIDADPPVEAAE*
Ga0164308_105224991	3300012985	Soil	MPGDPKECRQHARWCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPPVEAAE*
Ga0164304_100638311	3300012986	Soil	KECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDDIDADPPVEAAE*
Ga0164306_106872451	3300012988	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALD
Ga0164305_100226793	3300012989	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPPVEAAE*
Ga0163162_112050601	3300013306	Switchgrass Rhizosphere	MPGDPKECREHARICAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDDIDADPPVEAAE*
Ga0157372_128627561	3300013307	Corn Rhizosphere	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLDNAKAFIDAMNEMDAAPPVKAAE*
Ga0157380_124428231	3300014326	Switchgrass Rhizosphere	MPGDPKECRQHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPV
Ga0157376_111180361	3300014969	Miscanthus Rhizosphere	MPGDPKDCRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPPVEAAE*
Ga0157376_113143421	3300014969	Miscanthus Rhizosphere	LESIVIGQRTEETMPGDPKECREHARRCADLAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE*
Ga0132258_109812871	3300015371	Arabidopsis Rhizosphere	MPGDPKECRQHARRCAELASAATTQEAREQFLSLQMSWIRLAADLENAKAFIAAMDEMGADPPKAAE*
Ga0132256_1006168281	3300015372	Arabidopsis Rhizosphere	MPGDPKECRQHARRCAELASAATTQEAREQFLSLQMSWIRLAADLENAKAFIAAMDEMDADPPKAAE*
Ga0132255_1005241801	3300015374	Arabidopsis Rhizosphere	RILVRQNLAEEAMPGDPKECRQHARRCAELASAATTPEAREQFLSLQQSWMRLAADLENAKAFIAAMDEMDADPPKAAE*
Ga0163161_112006681	3300017792	Switchgrass Rhizosphere	MPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE
Ga0184609_101962591	3300018076	Groundwater Sediment	MPGDPKECRQHARRCAELASTATTPEARAQFLSLQQSWIRLAAELDSAQALIGALDEIEADPSVPAAE
Ga0184612_101448111	3300018078	Groundwater Sediment	MPGDPKECRQHARRCAELASTATTPEARAQFLSLQQSWIRLAAELDSAQALIGALDEIDADPPVPAAE
Ga0184625_105068591	3300018081	Groundwater Sediment	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLEHAKAFIAALDEIDADPP
Ga0190269_110693661	3300018465	Soil	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEIDADPPKAAE
Ga0190270_133662731	3300018469	Soil	MPGDPKECREHAKRCGELARLATTQEARQQFLSLQMSWIRLAADLDNAKAFIDAMNEMDEEPPIKAAE
Ga0173481_105961481	3300019356	Soil	MPGDPKQCRQHARPCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMGADPPKAAE
Ga0210381_102696821	3300021078	Groundwater Sediment	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAEDLEHAKAFIAALDEIDADPPKSRGIASGEGGEDRRPS
Ga0210406_102567291	3300021168	Soil	MPGDPKECRQHARRCAELAAVATTPEAREQFLSLQLSWIRLAADLDNAQTLIAALDEMDSGPPIKAAE
Ga0224452_11223352	3300022534	Groundwater Sediment	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLENAQAFIAALDEIDADPPIEAAE
Ga0207710_102426612	3300025900	Switchgrass Rhizosphere	MPGDPKECREHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPVEAAE
Ga0207688_107226401	3300025901	Corn, Switchgrass And Miscanthus Rhizosphere	MPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE
Ga0207654_107762772	3300025911	Corn Rhizosphere	GDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE
Ga0207671_106168391	3300025914	Corn Rhizosphere	RQRTEETMPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE
Ga0207690_118781771	3300025932	Corn Rhizosphere	MPGDPKECREHARRCAELAKAATTQEAREQFLSLQMSWIRLAADLDNAKAFIDAL
Ga0207709_113716991	3300025935	Miscanthus Rhizosphere	MPGDPKECRQHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPKAAE
Ga0207704_108129472	3300025938	Miscanthus Rhizosphere	MPGDPKECRQHARRCAELASVATTPKAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPPVEA
Ga0207708_111861231	3300026075	Corn, Switchgrass And Miscanthus Rhizosphere	MPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIEAMNEMDEEPPIKAAE
Ga0207675_1007124961	3300026118	Switchgrass Rhizosphere	MPGDPKECREHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPKAAE
Ga0209874_10990262	3300027577	Groundwater Sand	MPGDPKECRHHAQRCAELASVATTPEAREQFLSLQQSWMRLAADLENAQTVIAALDEIDDDPPVEAAE
Ga0209971_11432141	3300027682	Arabidopsis Thaliana Rhizosphere	MPGDPKQCRQHTRPCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPKAAE
Ga0207428_109783461	3300027907	Populus Rhizosphere	MPSHARPCAELASIATTPEAREQFLSLQQSWMRLAADLENAKAFIAALDEMDADPPNAAE
Ga0268266_115825401	3300028379	Switchgrass Rhizosphere	MPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMD
Ga0247828_101706332	3300028587	Soil	LKNRSLESIVIRQRTEEAMPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE
Ga0307498_100393391	3300031170	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQQSWMRLAADLENAQTVIAALDEI
Ga0307500_100796391	3300031198	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDEIDADPPVEAAE
Ga0307497_103819771	3300031226	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFISLQQSWMRLAADLENAQAFIAALD
Ga0310888_109622001	3300031538	Soil	LLIRQYTAEEETMPGDPKECREHAKRCAELAKAATTPEARDQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE
Ga0310887_109925221	3300031547	Soil	MPGDPKECREHARRCADLAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDALDEMDEEPPVKAAE
Ga0310886_109933241	3300031562	Soil	MPGDPKECREHARRCAELAKVATTQEAREQFLSLQMSWIRLAADLDNAKAFIDAMNEMDEEPPIKAAE
Ga0307469_121648301	3300031720	Hardwood Forest Soil	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAADLEHAKAFIAALDEIDADPPKAAE
Ga0310904_104818182	3300031854	Soil	LLIRQYTAEEETMPGHPKECREHAKRCAELAKAATTPEARDQFLSLQMSWIRLAADLDNAKAFIDALDEMDFAPPAKAAE
Ga0310884_102972841	3300031944	Soil	MPGDPKECRQHARRCAELASVASTPEAREQFLSLQMSWIRLAADLENAQAFIAALDDIDADPPV
Ga0214473_100100795	3300031949	Soil	MPGDPKECREHAKACAELAKIATTPEAREQFLSLQMSWIRLAADLDNAKAFIDAMNEMDEEPPIKAAE
Ga0310906_100941481	3300032013	Soil	MPGDPKECRQHARRCAELASVATTPEAREQFLSLQMSWIRLAADLENAQAFIAALDDIDADPPVEAAE
Ga0310906_107230411	3300032013	Soil	MPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDE
Ga0310890_108633011	3300032075	Soil	TEEAMPGDPKECREHAKRCAELAKLATTPEARDQFLSLQMSWVRLAADLDNAKAFIDAMNEMDEEPPIKAAE
Ga0307470_110838171	3300032174	Hardwood Forest Soil	MPGDPKECREHGRRCAELASVATTREAREQFISLQQSWMRLAADLENAQAFIAALDEIDADPPVEAAE
Ga0307471_1036982211	3300032180	Hardwood Forest Soil	MPGDPKECRQHARRCAELASIATTPEAREQFLSLQQSWMRLAAELEHAKAFIAALDEIDADPPQAAD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.68
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.68
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089358

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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