Metagenome / Metatranscriptome Family F089327

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089327
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	82 residues
Representative Sequence	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTVDEFTAANVPAPAKTALQEYLREKHKA
Number of Associated Samples	76
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	62.39 %
% of genes near scaffold ends (potentially truncated)	33.94 %
% of genes from short scaffolds (< 2000 bps)	86.24 %
Associated GOLD sequencing projects	68
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.633 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (31.193 % of family members)
Environment Ontology (ENVO)	Unclassified (34.862 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (79.817 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 20.37% β-sheet: 25.93% Coil/Unstructured: 53.70%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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SCOP family	SCOP domain	Representative PDB	TM-score
d.18.1.4: Guide RNA binding protein gBP	d2giaa1	2gia	0.62439
b.40.4.3: Single strand DNA-binding domain, SSB	d1kxla_	1kxl	0.62335
c.60.1.0: automated matches	d4arua_	4aru	0.58273
d.83.1.1: Bactericidal permeability-increasing protein, BPI	d1ewfa2	1ewf	0.57911
d.18.1.4: Guide RNA binding protein gBP	d2giab1	2gia	0.57678

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00300	His_Phos_1	26.61
PF00004	AAA	6.42
PF01494	FAD_binding_3	4.59
PF12852	Cupin_6	2.75
PF04317	DUF463	2.75
PF00072	Response_reg	1.83
PF01545	Cation_efflux	1.83
PF13738	Pyr_redox_3	1.83
PF12833	HTH_18	1.83
PF05128	DUF697	1.83
PF00106	adh_short	0.92
PF08448	PAS_4	0.92
PF13535	ATP-grasp_4	0.92
PF01370	Epimerase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	9.17
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	4.59
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	4.59
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	4.59
COG3106	Ras-like GTP-binding stress-induced protein YcjX, DUF463 family	Signal transduction mechanisms [T]	2.75
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	1.83
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	1.83
COG3768	Uncharacterized membrane protein YcjF, UPF0283 family	Function unknown [S]	1.83
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	1.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.63 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.29 %
Unclassified	root	N/A	40.37 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	41.28 %
Unclassified	root	N/A	40.37 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	38.53 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Roseiarcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae	15.60 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	9.17 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.83 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Roseiarcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus	15.60 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	9.17 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.37 %
Roseiarcus fermentans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	15.60 %
Bradyrhizobium neotropicale	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	3.67 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	1.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.92 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001471\|JGI12712J15308_10010840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2466	Open in IMG/M
3300001471\|JGI12712J15308_10131335	Not Available	642	Open in IMG/M
3300001546\|JGI12659J15293_10005835	All Organisms → cellular organisms → Bacteria	3595	Open in IMG/M
3300002245\|JGIcombinedJ26739_100037119	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4361	Open in IMG/M
3300002245\|JGIcombinedJ26739_100710387	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	884	Open in IMG/M
3300002245\|JGIcombinedJ26739_100733425	Not Available	867	Open in IMG/M
3300002245\|JGIcombinedJ26739_101213163	All Organisms → cellular organisms → Bacteria → Proteobacteria	644	Open in IMG/M
3300002245\|JGIcombinedJ26739_101718760	All Organisms → cellular organisms → Bacteria → Proteobacteria	527	Open in IMG/M
3300003505\|JGIcombinedJ51221_10208920	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	792	Open in IMG/M
3300003505\|JGIcombinedJ51221_10397460	Not Available	559	Open in IMG/M
3300004082\|Ga0062384_100913412	Not Available	622	Open in IMG/M
3300004091\|Ga0062387_100095190	All Organisms → cellular organisms → Bacteria → Proteobacteria	1586	Open in IMG/M
3300004091\|Ga0062387_101125582	Not Available	610	Open in IMG/M
3300004091\|Ga0062387_101442411	Not Available	550	Open in IMG/M
3300004091\|Ga0062387_101556942	Not Available	532	Open in IMG/M
3300005339\|Ga0070660_101171995	Not Available	651	Open in IMG/M
3300005435\|Ga0070714_100673291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	997	Open in IMG/M
3300005602\|Ga0070762_10025464	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3125	Open in IMG/M
3300005602\|Ga0070762_10238034	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300005602\|Ga0070762_10239139	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1125	Open in IMG/M
3300005610\|Ga0070763_10446577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	733	Open in IMG/M
3300005712\|Ga0070764_10129276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1373	Open in IMG/M
3300006173\|Ga0070716_100928911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	683	Open in IMG/M
3300006174\|Ga0075014_101008810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	505	Open in IMG/M
3300006175\|Ga0070712_100971995	All Organisms → cellular organisms → Bacteria	734	Open in IMG/M
3300006176\|Ga0070765_100437107	Not Available	1225	Open in IMG/M
3300006176\|Ga0070765_100946092	All Organisms → cellular organisms → Bacteria → Proteobacteria	814	Open in IMG/M
3300006893\|Ga0073928_10905631	Not Available	604	Open in IMG/M
3300009520\|Ga0116214_1193457	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	764	Open in IMG/M
3300009522\|Ga0116218_1106229	All Organisms → cellular organisms → Bacteria	1278	Open in IMG/M
3300009525\|Ga0116220_10093541	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1271	Open in IMG/M
3300009633\|Ga0116129_1003222	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7891	Open in IMG/M
3300009839\|Ga0116223_10662568	Not Available	600	Open in IMG/M
3300010396\|Ga0134126_10858069	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1023	Open in IMG/M
3300011120\|Ga0150983_13216444	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	836	Open in IMG/M
3300012088\|Ga0153944_1106059	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	537	Open in IMG/M
3300012176\|Ga0153952_1042461	All Organisms → cellular organisms → Bacteria → Proteobacteria	1063	Open in IMG/M
3300012177\|Ga0153943_1124773	Not Available	557	Open in IMG/M
3300014501\|Ga0182024_10312615	All Organisms → cellular organisms → Bacteria	2070	Open in IMG/M
3300015206\|Ga0167644_1006539	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	6342	Open in IMG/M
3300016341\|Ga0182035_11206209	Not Available	676	Open in IMG/M
3300018037\|Ga0187883_10027610	All Organisms → cellular organisms → Bacteria → Proteobacteria	3097	Open in IMG/M
3300018037\|Ga0187883_10640010	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	553	Open in IMG/M
3300020579\|Ga0210407_10015031	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5752	Open in IMG/M
3300020579\|Ga0210407_10700395	Not Available	785	Open in IMG/M
3300020582\|Ga0210395_10192828	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1527	Open in IMG/M
3300020582\|Ga0210395_10886264	Not Available	663	Open in IMG/M
3300020582\|Ga0210395_11035709	Not Available	607	Open in IMG/M
3300020582\|Ga0210395_11384826	Not Available	513	Open in IMG/M
3300020583\|Ga0210401_10901751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	743	Open in IMG/M
3300021170\|Ga0210400_10628424	Not Available	885	Open in IMG/M
3300021170\|Ga0210400_11208810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	609	Open in IMG/M
3300021171\|Ga0210405_11141781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	580	Open in IMG/M
3300021180\|Ga0210396_10199985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	1785	Open in IMG/M
3300021181\|Ga0210388_10542265	All Organisms → cellular organisms → Bacteria	1020	Open in IMG/M
3300021384\|Ga0213876_10054267	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	2116	Open in IMG/M
3300021401\|Ga0210393_10228053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1509	Open in IMG/M
3300021402\|Ga0210385_10452414	Not Available	970	Open in IMG/M
3300021402\|Ga0210385_10990400	Not Available	646	Open in IMG/M
3300021403\|Ga0210397_10044167	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2834	Open in IMG/M
3300021404\|Ga0210389_10956800	All Organisms → cellular organisms → Bacteria → Proteobacteria	665	Open in IMG/M
3300021405\|Ga0210387_10013714	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	6258	Open in IMG/M
3300021405\|Ga0210387_10153018	All Organisms → cellular organisms → Bacteria	1974	Open in IMG/M
3300021405\|Ga0210387_10449169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1144	Open in IMG/M
3300021405\|Ga0210387_10823500	Not Available	819	Open in IMG/M
3300021406\|Ga0210386_10630565	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	925	Open in IMG/M
3300021407\|Ga0210383_10125946	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2168	Open in IMG/M
3300021407\|Ga0210383_10778489	All Organisms → cellular organisms → Bacteria → Proteobacteria	820	Open in IMG/M
3300021407\|Ga0210383_11212078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	634	Open in IMG/M
3300021432\|Ga0210384_11454784	Not Available	590	Open in IMG/M
3300021433\|Ga0210391_10794978	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	740	Open in IMG/M
3300021474\|Ga0210390_10636938	Not Available	892	Open in IMG/M
3300021474\|Ga0210390_10756911	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300021477\|Ga0210398_10651838	Not Available	853	Open in IMG/M
3300021478\|Ga0210402_10337948	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1396	Open in IMG/M
3300022527\|Ga0242664_1030175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	907	Open in IMG/M
3300022530\|Ga0242658_1117408	Not Available	655	Open in IMG/M
3300025588\|Ga0208586_1137290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	512	Open in IMG/M
3300025633\|Ga0208480_1007607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3578	Open in IMG/M
3300025905\|Ga0207685_10377887	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	721	Open in IMG/M
3300025909\|Ga0207705_11441200	Not Available	523	Open in IMG/M
3300026551\|Ga0209648_10145535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1879	Open in IMG/M
3300027117\|Ga0209732_1024625	Not Available	1026	Open in IMG/M
3300027432\|Ga0209421_1022326	Not Available	1221	Open in IMG/M
3300027497\|Ga0208199_1130676	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	512	Open in IMG/M
3300027559\|Ga0209222_1040568	Not Available	896	Open in IMG/M
3300027604\|Ga0208324_1189151	Not Available	549	Open in IMG/M
3300027795\|Ga0209139_10082501	Not Available	1130	Open in IMG/M
3300027855\|Ga0209693_10273933	Not Available	825	Open in IMG/M
3300027884\|Ga0209275_10063221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1814	Open in IMG/M
3300027895\|Ga0209624_10677764	Not Available	681	Open in IMG/M
3300027908\|Ga0209006_10057103	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	3497	Open in IMG/M
3300027908\|Ga0209006_10166096	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1931	Open in IMG/M
3300027908\|Ga0209006_10428261	Not Available	1111	Open in IMG/M
3300027908\|Ga0209006_10759182	Not Available	789	Open in IMG/M
3300027908\|Ga0209006_11132887	Not Available	615	Open in IMG/M
3300028906\|Ga0308309_11873439	All Organisms → cellular organisms → Bacteria → Proteobacteria	506	Open in IMG/M
3300029943\|Ga0311340_10712318	Not Available	859	Open in IMG/M
3300030580\|Ga0311355_10645782	Not Available	992	Open in IMG/M
3300030659\|Ga0316363_10442058	Not Available	501	Open in IMG/M
3300031474\|Ga0170818_108286134	Not Available	581	Open in IMG/M
3300031708\|Ga0310686_103015189	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium neotropicale	507	Open in IMG/M
3300031708\|Ga0310686_111308599	Not Available	808	Open in IMG/M
3300031708\|Ga0310686_112534624	Not Available	716	Open in IMG/M
3300031708\|Ga0310686_119120668	Not Available	696	Open in IMG/M
3300031718\|Ga0307474_10535508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Roseiarcaceae → Roseiarcus → Roseiarcus fermentans	920	Open in IMG/M
3300031718\|Ga0307474_11000857	Not Available	662	Open in IMG/M
3300032067\|Ga0318524_10650693	All Organisms → cellular organisms → Bacteria → Proteobacteria	555	Open in IMG/M
3300034195\|Ga0370501_0139269	All Organisms → cellular organisms → Bacteria → Proteobacteria	836	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	84.40%
Aquatic	Environmental → Aquatic	10.09%
Plants	Host-Associated → Plants	2.75%
Fungi	Host-Associated → Fungi	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	82.57%
Freshwater	Environmental → Aquatic → Freshwater	8.26%
Mycelium	Host-Associated → Fungi → Mycelium	2.75%
Peat	Environmental → Terrestrial → Peat	1.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.83%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Sediment	Environmental → Aquatic → Sediment	0.92%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	49.54%
Loam	Environmental → Terrestrial → Soil → Loam	31.19%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	8.26%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	2.75%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.83%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	34.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	27.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	11.93%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	7.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	2.75%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	1.83%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.92%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	0.92%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	31.19%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	18.35%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	9.17%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	6.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	2.75%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.83%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.92%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Untreated Peat Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.92%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001471	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300009522	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG	Environmental	Open in IMG/M
3300009525	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_7_NC metaG	Environmental	Open in IMG/M
3300009633	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_10	Environmental	Open in IMG/M
3300009839	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012088	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ028 MetaG	Host-Associated	Open in IMG/M
3300012176	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ036 MetaG	Host-Associated	Open in IMG/M
3300012177	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ027 MetaG	Host-Associated	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300015206	Arctic soil microbial communities from a glacier forefield, Russell Glacier, Kangerlussuaq, Greenland (Sample G8B, Adjacent to main proglacial river, end of transect (Watson river))	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300018037	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_10	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022527	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022530	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025633	Arctic peat soil from Barrow, Alaska - NGEE Surface sample F53-1 shallow-092012 (SPAdes)	Environmental	Open in IMG/M
3300025905	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027117	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027432	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O2 (SPAdes)	Environmental	Open in IMG/M
3300027497	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG (SPAdes)	Environmental	Open in IMG/M
3300027559	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030659	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_a_PC metaG (v2)	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300034195	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_fen_01D_17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12712J15308_100108403	3300001471	Forest Soil	MAVTLGPDIFFKTRSSRARPYEQYRLNGESVVCERVTPNARSPGSPQIKPLQSWTVDEFTAANVPAPAKAALQEYLREKHKA*
JGI12712J15308_101313352	3300001471	Forest Soil	MLEPETQERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP*
JGI12659J15293_100058352	3300001546	Forest Soil	MLVPETKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERVTPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP*
JGIcombinedJ26739_1000371196	3300002245	Forest Soil	MAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERXTPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP*
JGIcombinedJ26739_1007103872	3300002245	Forest Soil	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPQDAKTALQEYLREKHKA*
JGIcombinedJ26739_1007334251	3300002245	Forest Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQIKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA*
JGIcombinedJ26739_1012131631	3300002245	Forest Soil	MLVPETKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKLLQSWTVAEFPAANVPPPAKTSFQELLRERHKP*
JGIcombinedJ26739_1017187602	3300002245	Forest Soil	MTVTLGPDIFFKTRSSRARPYEQYRLNGETVACERVTPNARSPGSPQIKPLQSWTVDEFIAANVPAPAKAALQEYLKEKH
JGIcombinedJ51221_102089201	3300003505	Forest Soil	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA*
JGIcombinedJ51221_103974601	3300003505	Forest Soil	MAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP*
Ga0062384_1009134121	3300004082	Bog Forest Soil	MTVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP*
Ga0062387_1000951902	3300004091	Bog Forest Soil	VTLGPGIFFRTRSTRGRPYEQYRLDGESIVCERIAPNARSSGAPHVKPLQSWTVGEFLIANVLPSAKASLQQILSERHAKRS*
Ga0062387_1011255822	3300004091	Bog Forest Soil	MVARGQCLSLRFGAIDQRSPSAPYSAMLEPEIQERMTVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP*
Ga0062387_1014424111	3300004091	Bog Forest Soil	MTVTLGPDIFFKTRSSRARPYEQYRLTGETVACERVTPNARSPGSPQIKRLQSWTVDEFTAANVPQDAKTALQEYLREKHKA*
Ga0062387_1015569422	3300004091	Bog Forest Soil	VTLGTGIFYKTRSSRARPYEQYRLNGESVVCERVTPNARSPGAPQVKPLQSWTVDEFTAANVPPPAKTAFQEFLKEKHKA*
Ga0070660_1011719952	3300005339	Corn Rhizosphere	VNLGPDIFFKARSSRSRPYEQYRLNGDTVLCERVTPNARSPGAHQIKPLQSWTVDEFAAANVPAPAKTALQDYLREKRRS*
Ga0070714_1006732912	3300005435	Agricultural Soil	MALGPGIFFKARSSRARPFEQYRLDGESVIVERVTPNARSPGAAPQVKPLQSWTIDEFTAANVPVAAKTALQEYLREKHKSK*
Ga0070762_100254642	3300005602	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLREKHKA*
Ga0070762_102380342	3300005602	Soil	MAVTLGPDIFFKARSSRARPYEQYRLNGESVVCERVTPNARSPGAPQIKPLQTWTVDEFLAANVPAPAKTALQEYLREKHKA*
Ga0070762_102391391	3300005602	Soil	IDQRSPSAPSSDMLEPETQERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP*
Ga0070763_104465771	3300005610	Soil	TQERTAVTLGPGIFYKTRSKRALSYERYRLDGESVVCERVTPNARSPGAPQVKLLQSWPVAEFTAANVPQDAKTSLQELLRERHKP*
Ga0070764_101292762	3300005712	Soil	MTLGPDIFFKARSSRARPFEQYRLNGETVTVERVTPNARSPGAPPQIKPLQSWTIDEFTAANVPEPAKGALQEYLREKHKSSS*
Ga0070716_1009289112	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	IFFKTRSSRARPYEQYRLDGESVVCERVTPNARSPGAPHVKLLQSWTVTEFTDANVPPPAKTSLQDLLKERRKA*
Ga0075014_1010088102	3300006174	Watersheds	SRARPYEQYRLDDESVVNERITPNPRSSGPPHVKLLQSWTVAEFTAANVPPDAKTSFQELLRERRKP*
Ga0070712_1009719952	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MALDPGIFFKARSSRARPFEQYRLDGESVIVERVTPNARSPGAAPQVKPLQSWTIDEFTAANVPVAAKTALQEYLREKHKSK*
Ga0070765_1004371071	3300006176	Soil	MLEPETQERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRER
Ga0070765_1009460922	3300006176	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA*
Ga0073928_109056312	3300006893	Iron-Sulfur Acid Spring	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLREKHKA*
Ga0116214_11934572	3300009520	Peatlands Soil	MAVTLGPGIFYKTRSHRALPYERYRLDGESVVCERITPNARSSGAPHVKLLQSWTVAEFMVANVPPPAKTSFQELLRERHKP*
Ga0116218_11062292	3300009522	Peatlands Soil	MAVTLGPGIFYKTRSHRALPYERYRLDGESVVCERITPNARSSGAPHVKLLQSWTVAEFMVANVPPPAKPSFQELLRERHKP*
Ga0116220_100935413	3300009525	Peatlands Soil	VTLGPGIFYKTRSHRALPYERYRLDGESVVCERITPNARSSGAPHVKLLQSWTVAEFMVANVPPPAKTSFQELLRERHKP*
Ga0116129_10032225	3300009633	Peatland	VTLGPDIFFKARSSRARPYEQYRLNGESVVCERVTPNARSPSAAPQIKPLQTWTIDEFTAANVPAPAKTALQEYLREKHKA*
Ga0116223_106625682	3300009839	Peatlands Soil	MAVTLGPGIFYKTRSHRALPYERYRLDGESVVCERITPNARSSGAPHVKLLQSWTVAEFMVANVPPPAKTSFQELL
Ga0134126_108580693	3300010396	Terrestrial Soil	GKLRNGHPVNLGPDIFFKARSSRSRPYEQYRLNGDTVLCERVTPNARSPGAHQIKPLQSWTVDEFAAANVPAPAKTALQDYLREKRRS*
Ga0150983_132164441	3300011120	Forest Soil	LGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA*
Ga0153944_11060591	3300012088	Attine Ant Fungus Gardens	VTLGPDIFFKTRSSRARPYEQYRLNGESVVCERVTPNARSPGAPQIKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA*
Ga0153952_10424611	3300012176	Attine Ant Fungus Gardens	VIYIAGERIAVTLGPGIFYKSRSKRALAYERYRLDGESVVCERVTPNARSSVAPHVKFLQSWTVDDFASANVPPPAKTSFHEFLREKHKR*
Ga0153943_11247731	3300012177	Attine Ant Fungus Gardens	MAVTLGPGIFYKTRSKRALSYERYRLDGESVVCERVTPNARSAGAPHVKLLQSWTVDEFIAANVPPPAKT
Ga0182024_103126152	3300014501	Permafrost	VTLGPGIFFKARSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKPLQTWTVAEFTEANVPPPAKTALQEFLKERHKAQGEARPT*
Ga0167644_10065393	3300015206	Glacier Forefield Soil	VTLGPGIFFKARSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKPLQTWTVAEFTEANVPPPAKTALQEFLKERHKAQGEERPT*
Ga0182035_112062092	3300016341	Soil	VTLGPGIFYKTRSPRALAYERYRLDHESVVCERVTPNARSPGAPHVKLLQSWTIDEFVAANVPPPAKTSFQEFLRERHKP
Ga0187883_100276104	3300018037	Peatland	VTLGPGIFFRTRSTRGRPYEQYRLDGESIVCERITPNARSSGAPHVKPLQSWTVGEFLIANVLPSAKASLQQILSERHAKRS
Ga0187883_106400101	3300018037	Peatland	VTLGPGIFYRARSTRGRPYEQYRLDGESVVCERITPNARSGAPHVKHLQSWTVAEFLIANVLPRAKASLQQILSERHAKRS
Ga0210407_100150311	3300020579	Soil	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTVDEFTAANVPAPAKTALQEYLREKHKA
Ga0210407_107003951	3300020579	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA
Ga0210395_101928281	3300020582	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQ
Ga0210395_108862642	3300020582	Soil	MAVTLGPDIFFKARSSRARPYEQYRLNGESVVCERVTPNARSPGAPQIKPLQTWTVDEFLAANVPAPAKTALQEYLREKHKA
Ga0210395_110357092	3300020582	Soil	MLEPETQERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210395_113848261	3300020582	Soil	MTVTLGPDIFFKTRSSRARPYEQYRLTGETVACERVTPNARSPGSPQIKRLQSWTVDEFTAANVPQDAKTALQEYLREKHKA
Ga0210401_109017511	3300020583	Soil	FKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQIKPLQSWTIDEFTAANVPAPAKTALQEYLREKHKA
Ga0210400_106284241	3300021170	Soil	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA
Ga0210400_112088101	3300021170	Soil	TQEQMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210405_111417812	3300021171	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQIKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA
Ga0210396_101999851	3300021180	Soil	PGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210388_105422652	3300021181	Soil	MAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKRLQSWTVAEFTAANVPPPAKTSFQELLRDRHKP
Ga0213876_100542671	3300021384	Plant Roots	MTLGPSIFFKGRSSRGRPYEQYRLDGDSVIVERVTPNARSPAAPLIKPLQSWTVDEFTAANVPAPAKTALQDHLKQKHKA
Ga0210393_102280531	3300021401	Soil	PETKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210385_104524142	3300021402	Soil	MTVTLGPDIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA
Ga0210385_109904001	3300021402	Soil	MTLGPDIFFKARSSRARPFEQYRLNGETVTVERVTPNARSPGAPPQIKPLQSWTIDEFTAANVPEPAKGALQEYLREKHKSSS
Ga0210397_100441672	3300021403	Soil	MLVPETKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210389_109568001	3300021404	Soil	MTVTLGPDIFFKTRSSRARPYEQYRLNGESVVCERVTPNARSPGSPQIKPLQSWTVDEFTTANVPAPAKTALQEYLREKHKA
Ga0210387_100137141	3300021405	Soil	MAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210387_101530182	3300021405	Soil	MLVPETKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERVTPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210387_104491691	3300021405	Soil	NHKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKRLQSWTVAEFTAANVPPPAKTSFQELLRDRHKP
Ga0210387_108235001	3300021405	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLREKHK
Ga0210386_106305653	3300021406	Soil	FYKSRSSRARPYEQYRLDGESVVCERVTPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210383_101259462	3300021407	Soil	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLREKHKA
Ga0210383_107784892	3300021407	Soil	MLVPETKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKRLQSWTVAEFTAANVPPPAKTSFQELLRDRHKP
Ga0210383_112120782	3300021407	Soil	QRSPSAPSSDMLEPETQERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0210384_114547842	3300021432	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQIKPLQSWTIDEFTAANVPAPAKTALQEYLKEK
Ga0210391_107949781	3300021433	Soil	FKTRSSRARPYEQYRLTGETVACERVTPNARSPGSPQIKRLQSWTVDEFTAANVPQDAKTALQEYLREKHKA
Ga0210390_106369381	3300021474	Soil	MTLGPGIFFKARSSRARPFEQYRLNGETVTVERVTPNARSPGAPPQIKPLQSWTIDEFTAANVPEPAKGALQEYLREKHKSSS
Ga0210390_107569111	3300021474	Soil	VTLGPGIFYKTRSKRALSYERYRLDGESVVCERVTPNARSPGAPQVKLLQSWPVAEFTAANVPQDAKTSLQE
Ga0210398_106518381	3300021477	Soil	VTLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPAPAKTALQEYLREKHKA
Ga0210402_103379483	3300021478	Soil	SRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTVDEFTAANVPAPAKTALQEYLREKHKA
Ga0242664_10301751	3300022527	Soil	TLGPGIFFKTRSSRARPYEQYRLHGESVVCERITPNARSPGSPQIKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA
Ga0242658_11174082	3300022530	Soil	RSSRARPYEQYRLHGESVVCERITPNARSPGSPQIKPLQSWTIDEFTAANVPVPAKTALQEYLKEKHKA
Ga0208586_11372901	3300025588	Arctic Peat Soil	VTLGPDIFFKTRSSRARPYEQYRLNGETVACERVTPNARSPGSPQIKPLQSWTIDEFTAANVPAPAKTALQEYLREKHKA
Ga0208480_10076072	3300025633	Arctic Peat Soil	MTVTLGPDIFFKTRSSRARPYEQYRLNGETVACERVTPNARSPGSPQIKPLQSWTVDEFIAANVPAPAKAALQEYLKEKHKA
Ga0207685_103778871	3300025905	Corn, Switchgrass And Miscanthus Rhizosphere	MTLGPGIFFKTRSSRARPYEQYRLDGESVVCERVTPNARSPGAAPQVKPLQSWTIDEFTAANVPVAAKTALQEYLREKHKSK
Ga0207705_114412001	3300025909	Corn Rhizosphere	VNLGPDIFFKARSSRSRPYEQYRLNGDTVLCERVTPNARSPGAHQIKPLQSWTVDEFAAANVPAPAKTALQDYLREKRRS
Ga0209648_101455354	3300026551	Grasslands Soil	MAVTLGPGIFYRTRSTRGRPYEQYRFDGESIVCERITPNARSSGAPHVKHLQSWNVGEFLIANVLPGAKASLQELLKERHANRP
Ga0209732_10246252	3300027117	Forest Soil	MAVTLGPDIFFKTRSSRARPYEQYRLNGESVVCERVTPNARSPGSPQIKPLQSWTVDEFTAANVPAPAKAALQEYLREKHKA
Ga0209421_10223261	3300027432	Forest Soil	LGPDIFFKARSSRARPYEQYRLNGESVVCERVTPNARSPGAPQIKPLQTWTVDEFLAANVPAPAKTALQEYLREKHKA
Ga0208199_11306762	3300027497	Peatlands Soil	MAVTLGPGIFYKTRSHRALPYERYRLDGESVVCERITPNARSSGAPHVKLLQSWTVAEFMVANVPPPAKTSFQELLRERHKP
Ga0209222_10405681	3300027559	Forest Soil	VTLGPDIFFKARSSRARPYEQYRLNGESVVCERVTPNARSPSAAPQIKPLQTWTIDEFTAANVPAPAKTALQEYLREKHKA
Ga0208324_11891512	3300027604	Peatlands Soil	MAVTLGPGIFYKTRSHRALPYERYRLDGESVVCERITPNARSSGAPHVKLLQSWTVAEFMVANVPPPAK
Ga0209139_100825012	3300027795	Bog Forest Soil	VTLGPGIFYKARSSRARPYEQYRLTGETVACERVTPNARSPGSPQIKRLQSWTVDEFTAANVPQDAKTALQEYLREKHKA
Ga0209693_102739332	3300027855	Soil	SSRARPYEQYRLNGESVVCERVTPNARSPSAAPQIKPLQTWTVDEFTAANVPAPAKAALQEYLREKHKA
Ga0209275_100632211	3300027884	Soil	IDQRSPSAPSSDMLEPETQERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERITPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0209624_106777641	3300027895	Forest Soil	VTLGPDIFFKTRSSRARPYEQYRLNGESVVCERVTPNARSPGAPQIKPLQSWTIDEFTAANVPVPAKTALQEYLKEKHKA
Ga0209006_100571035	3300027908	Forest Soil	MAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKLLQSWTVAEFPAANVPPPAKTSFQELLRERHKP
Ga0209006_101660962	3300027908	Forest Soil	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQIKPLQSWTIDEFTAANVPAPAKTALQEYLKEKHKA
Ga0209006_104282611	3300027908	Forest Soil	MRNHKERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKRLQSWTVAEFTAANVPPPAKTSFQELLR
Ga0209006_107591821	3300027908	Forest Soil	VTLGPGIFFKTRSSRARPYEQYRLNGESVVCERITPNARSPGSPQVKPLQSWTIDEFTAANVPQDAKTALQEYLREKHKA
Ga0209006_111328872	3300027908	Forest Soil	MTLGPGIFFKTRSSRARPYEQYRLDGERIVCERVTPNARSPSAPQIKPLQSWTVDEFTAANVPAPAKAAFQEYLREKHKP
Ga0308309_118734391	3300028906	Soil	MAVTLGPDIFFKTRSSRARPYEQYRLNGESVVCERVTPNARSPGSPQIKPLQSWTVDEFTAANVPAPAKAALQEYLREK
Ga0311340_107123182	3300029943	Palsa	MTLGPDIFFKARSSRARPYEQYRLNGETVTVERVTPNARSPGAPPQVKPLQSWTIDGFTAANVPEPAKAALQEYLREKHKPSS
Ga0311355_106457821	3300030580	Palsa	MVVTLGPGIFFKARSSRARPYEQYRLEGESVVCERVTPNPRSSGNPHIKPLQSWTVDGFTAANVPPDAKTALQEFLKEKHKA
Ga0316363_104420582	3300030659	Peatlands Soil	VTLGPGIFYKTRSHRALPYERYRLDGESVVCERITPNARSSGAPHVKLLQSWTVAEFMVANVPPPAKTSFQELL
Ga0170818_1082861341	3300031474	Forest Soil	LGPDIFFKTRSSRSRPFEQYRLTGETVACERVTPNARSPGSPQIKRLQSWTVEEFTAANVPQDAKTALQEYLREKHKA
Ga0310686_1030151892	3300031708	Soil	VTLGPDIFFKARSSRARPYEQYRLNGESVICERVTPNARSPSAAPQIKPLQTWTVDEFTAANVPAPAKTALQEYLREKHKA
Ga0310686_1113085992	3300031708	Soil	MVVTLGPGIFFKARSSRARPYEQYRLDGESVICERVTPNPRSSGAPNIKPLQSWTVDEFVAANVPPDAKTALHEYLKERHKA
Ga0310686_1125346242	3300031708	Soil	MDMTLGPDIFFKARSSRARPYEQYRLSGETVTVERVTPNARSPGAPPQIKPLQSWTIEGFAAANVPEPAKAALQEYLREKNKSS
Ga0310686_1191206682	3300031708	Soil	VTLGPGIFFKARSSRARPYEQYRLDGESVVCERITPNPRSSGAPHVKPLQTWTVAEFTEANVPPPAKTALQEFLKERHKAQGEERPT
Ga0307474_105355082	3300031718	Hardwood Forest Soil	MLEPETQERMAVTLGPGIFYKSRSSRARPYEQYRLDGESVICERVTPNPRSSGAPHVKLLQSWTVAEFTAANVPPPAKTSFQELLRERHKP
Ga0307474_110008571	3300031718	Hardwood Forest Soil	MAVTLGPGIFYKTRSKRALSYERYRLDGESVVCERVTPDARSSGAPQVKLLQSWTVAEFEIANVPPPAK
Ga0318524_106506931	3300032067	Soil	VTLGPGIFYKTRSPRALAYERYRLDHESVVCERVTPNARSPGAPHVKLLQSWTIDEFVAANVPPPAKTSFQEFL
Ga0370501_0139269_320_562	3300034195	Untreated Peat Soil	VTLGPGIFYKSRSKRALAYERYRLDGQSVVCERVTPNARSPGAPQIKLLQTWTADEFVAANVPPPAKTAFEEFLKEKHKP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089327

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences