NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome Family F089303

Metagenome Family F089303

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F089303
Family Type Metagenome
Number of Sequences 109
Average Sequence Length 56 residues
Representative Sequence LLGTARAQTQFDRAAATRSYQQLLDIWKNADADFIPAQEAKRELAALTAQAKN
Number of Associated Samples 100
Number of Associated Scaffolds 109

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 2.75 %
% of genes near scaffold ends (potentially truncated) 93.58 %
% of genes from short scaffolds (< 2000 bps) 86.24 %
Associated GOLD sequencing projects 94
AlphaFold2 3D model prediction Yes
3D model pTM-score0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (89.908 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(10.092 % of family members)
Environment Ontology (ENVO) Unclassified
(23.853 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(41.284 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.56%    β-sheet: 0.00%    Coil/Unstructured: 44.44%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.54
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 109 Family Scaffolds
PF00719Pyrophosphatase 18.35
PF01346FKBP_N 12.84
PF03631Virul_fac_BrkB 5.50
PF00326Peptidase_S9 4.59
PF00072Response_reg 3.67
PF13286HD_assoc 2.75
PF00795CN_hydrolase 1.83
PF07238PilZ 1.83
PF08450SGL 1.83
PF03100CcmE 1.83
PF00291PALP 1.83
PF02597ThiS 1.83
PF14815NUDIX_4 0.92
PF00106adh_short 0.92
PF00704Glyco_hydro_18 0.92
PF00149Metallophos 0.92
PF00025Arf 0.92
PF00486Trans_reg_C 0.92
PF04226Transgly_assoc 0.92
PF13620CarboxypepD_reg 0.92
PF03544TonB_C 0.92
PF00830Ribosomal_L28 0.92
PF01850PIN 0.92
PF13456RVT_3 0.92
PF00069Pkinase 0.92
PF12833HTH_18 0.92

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 109 Family Scaffolds
COG0221Inorganic pyrophosphataseEnergy production and conversion [C] 18.35
COG0545FKBP-type peptidyl-prolyl cis-trans isomerasePosttranslational modification, protein turnover, chaperones [O] 12.84
COG1295Uncharacterized membrane protein, BrkB/YihY/UPF0761 family (not an RNase)Function unknown [S] 5.50
COG0515Serine/threonine protein kinaseSignal transduction mechanisms [T] 3.67
COG1977Molybdopterin synthase sulfur carrier subunit MoaDCoenzyme transport and metabolism [H] 1.83
COG2104Sulfur carrier protein ThiS (thiamine biosynthesis)Coenzyme transport and metabolism [H] 1.83
COG2332Cytochrome c biogenesis protein CcmEPosttranslational modification, protein turnover, chaperones [O] 1.83
COG3386Sugar lactone lactonase YvrECarbohydrate transport and metabolism [G] 1.83
COG3391DNA-binding beta-propeller fold protein YncEGeneral function prediction only [R] 1.83
COG0227Ribosomal protein L28Translation, ribosomal structure and biogenesis [J] 0.92
COG0810Periplasmic protein TonB, links inner and outer membranesCell wall/membrane/envelope biogenesis [M] 0.92
COG1100GTPase SAR1 family domainGeneral function prediction only [R] 0.92
COG2261Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein familyGeneral function prediction only [R] 0.92


 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms89.91 %
UnclassifiedrootN/A10.09 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001356|JGI12269J14319_10277398All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis613Open in IMG/M
3300001546|JGI12659J15293_10131954All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae544Open in IMG/M
3300003505|JGIcombinedJ51221_10343071All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis607Open in IMG/M
3300004091|Ga0062387_100454904All Organisms → cellular organisms → Bacteria880Open in IMG/M
3300004479|Ga0062595_100097486All Organisms → cellular organisms → Bacteria1551Open in IMG/M
3300005093|Ga0062594_102386868All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium577Open in IMG/M
3300005330|Ga0070690_100015876All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter4499Open in IMG/M
3300005434|Ga0070709_10514523All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter911Open in IMG/M
3300005436|Ga0070713_102365648All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter514Open in IMG/M
3300005440|Ga0070705_100297986All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1154Open in IMG/M
3300005444|Ga0070694_100204932All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1472Open in IMG/M
3300005445|Ga0070708_100156265All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2123Open in IMG/M
3300005445|Ga0070708_100961719All Organisms → cellular organisms → Bacteria801Open in IMG/M
3300005455|Ga0070663_100212198All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1516Open in IMG/M
3300005563|Ga0068855_100371218All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter1572Open in IMG/M
3300005614|Ga0068856_100497730All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1240Open in IMG/M
3300005616|Ga0068852_101276691All Organisms → cellular organisms → Bacteria → Acidobacteria756Open in IMG/M
3300006032|Ga0066696_11050941All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae518Open in IMG/M
3300006052|Ga0075029_100236049All Organisms → cellular organisms → Bacteria1151Open in IMG/M
3300006102|Ga0075015_100008179All Organisms → cellular organisms → Bacteria4334Open in IMG/M
3300006174|Ga0075014_100089103All Organisms → cellular organisms → Bacteria1417Open in IMG/M
3300006854|Ga0075425_100003674All Organisms → cellular organisms → Bacteria → Acidobacteria15621Open in IMG/M
3300006904|Ga0075424_102133658All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae590Open in IMG/M
3300006914|Ga0075436_101094388All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium KBS 83600Open in IMG/M
3300009038|Ga0099829_10238271All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1481Open in IMG/M
3300009088|Ga0099830_11026068Not Available683Open in IMG/M
3300009089|Ga0099828_10942129All Organisms → cellular organisms → Bacteria → Acidobacteria770Open in IMG/M
3300009093|Ga0105240_11279941All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300009521|Ga0116222_1412213All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium588Open in IMG/M
3300009545|Ga0105237_10359686All Organisms → cellular organisms → Bacteria → Acidobacteria1460Open in IMG/M
3300009618|Ga0116127_1051079All Organisms → cellular organisms → Bacteria1188Open in IMG/M
3300009698|Ga0116216_10798655All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium566Open in IMG/M
3300009759|Ga0116101_1013754All Organisms → cellular organisms → Bacteria1517Open in IMG/M
3300009759|Ga0116101_1060675All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium829Open in IMG/M
3300010048|Ga0126373_10144757All Organisms → cellular organisms → Bacteria2252Open in IMG/M
3300010321|Ga0134067_10002251All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae4702Open in IMG/M
3300010358|Ga0126370_11695882All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium608Open in IMG/M
3300010379|Ga0136449_101110883All Organisms → cellular organisms → Bacteria1257Open in IMG/M
3300010379|Ga0136449_103870326All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium562Open in IMG/M
3300012189|Ga0137388_10722360All Organisms → cellular organisms → Bacteria → Acidobacteria925Open in IMG/M
3300012210|Ga0137378_10928459All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium783Open in IMG/M
3300012357|Ga0137384_10059043All Organisms → cellular organisms → Bacteria → Acidobacteria3180Open in IMG/M
3300012357|Ga0137384_11265168All Organisms → cellular organisms → Bacteria584Open in IMG/M
3300012683|Ga0137398_10266784All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1144Open in IMG/M
3300012917|Ga0137395_10462346Not Available912Open in IMG/M
3300012917|Ga0137395_11097451Not Available564Open in IMG/M
3300012957|Ga0164303_10514285All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium769Open in IMG/M
3300013296|Ga0157374_10083674All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3032Open in IMG/M
3300014167|Ga0181528_10191890All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1103Open in IMG/M
3300014501|Ga0182024_11065281All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium958Open in IMG/M
3300014501|Ga0182024_11541956All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium756Open in IMG/M
3300014968|Ga0157379_12381140All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium528Open in IMG/M
3300015265|Ga0182005_1093872All Organisms → cellular organisms → Bacteria836Open in IMG/M
3300015265|Ga0182005_1297735All Organisms → cellular organisms → Bacteria509Open in IMG/M
3300017924|Ga0187820_1128490All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium749Open in IMG/M
3300017924|Ga0187820_1178605All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium653Open in IMG/M
3300017936|Ga0187821_10196901All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300017938|Ga0187854_10334536All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae642Open in IMG/M
3300017943|Ga0187819_10266377All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1000Open in IMG/M
3300018007|Ga0187805_10459788All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium594Open in IMG/M
3300018019|Ga0187874_10455506All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium515Open in IMG/M
3300018021|Ga0187882_1140660All Organisms → cellular organisms → Bacteria990Open in IMG/M
3300018046|Ga0187851_10116846All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1642Open in IMG/M
3300018085|Ga0187772_10846579All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium662Open in IMG/M
3300018468|Ga0066662_11913289All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium621Open in IMG/M
3300019888|Ga0193751_1075765Not Available1359Open in IMG/M
3300021168|Ga0210406_11362326All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium508Open in IMG/M
3300021178|Ga0210408_10912157Not Available683Open in IMG/M
3300021181|Ga0210388_10323596All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1355Open in IMG/M
3300021401|Ga0210393_10681861All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium838Open in IMG/M
3300021407|Ga0210383_11218472All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium632Open in IMG/M
3300021420|Ga0210394_11546066Not Available560Open in IMG/M
3300021432|Ga0210384_10788756All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium847Open in IMG/M
3300021474|Ga0210390_11132858All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium634Open in IMG/M
3300021478|Ga0210402_10161051All Organisms → cellular organisms → Bacteria2048Open in IMG/M
3300021479|Ga0210410_11803334All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium506Open in IMG/M
3300021559|Ga0210409_10396523All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1235Open in IMG/M
3300021560|Ga0126371_12469316All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae629Open in IMG/M
3300022557|Ga0212123_10302406All Organisms → cellular organisms → Bacteria1117Open in IMG/M
3300025898|Ga0207692_10162795All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis1287Open in IMG/M
3300025906|Ga0207699_10083876All Organisms → cellular organisms → Bacteria1983Open in IMG/M
3300025914|Ga0207671_10021723All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis4864Open in IMG/M
3300025921|Ga0207652_11760471All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → unclassified Gemmataceae → Gemmataceae bacterium524Open in IMG/M
3300025940|Ga0207691_11541223All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300025941|Ga0207711_10017388All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5974Open in IMG/M
3300025972|Ga0207668_10728340Not Available873Open in IMG/M
3300026078|Ga0207702_10837467All Organisms → cellular organisms → Bacteria910Open in IMG/M
3300026078|Ga0207702_10995683All Organisms → cellular organisms → Bacteria831Open in IMG/M
3300026300|Ga0209027_1295350All Organisms → cellular organisms → Bacteria522Open in IMG/M
3300026330|Ga0209473_1182532Not Available813Open in IMG/M
3300027505|Ga0209218_1112684All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium571Open in IMG/M
3300027583|Ga0209527_1140275Not Available537Open in IMG/M
3300027662|Ga0208565_1171446All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium626Open in IMG/M
3300027681|Ga0208991_1016941All Organisms → cellular organisms → Bacteria → Acidobacteria2195Open in IMG/M
3300027738|Ga0208989_10020650All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae2265Open in IMG/M
3300027795|Ga0209139_10201158All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium705Open in IMG/M
3300027812|Ga0209656_10290679All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter kueseliae759Open in IMG/M
3300027889|Ga0209380_10067826All Organisms → cellular organisms → Bacteria2034Open in IMG/M
3300027905|Ga0209415_10179895All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis2045Open in IMG/M
3300028536|Ga0137415_10533103Not Available983Open in IMG/M
3300028780|Ga0302225_10207871All Organisms → cellular organisms → Bacteria940Open in IMG/M
3300029922|Ga0311363_10413582All Organisms → cellular organisms → Bacteria1425Open in IMG/M
3300030494|Ga0310037_10186459All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium926Open in IMG/M
3300031128|Ga0170823_12661874All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1020Open in IMG/M
3300031524|Ga0302320_11958682All Organisms → cellular organisms → Bacteria → Acidobacteria551Open in IMG/M
3300031754|Ga0307475_10953221All Organisms → cellular organisms → Bacteria676Open in IMG/M
3300032160|Ga0311301_12744250All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium540Open in IMG/M
3300032180|Ga0307471_102067938Not Available715Open in IMG/M
3300034163|Ga0370515_0119291All Organisms → cellular organisms → Bacteria → Acidobacteria1136Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil10.09%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.09%
Peatlands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil8.26%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere7.34%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.50%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment4.59%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere4.59%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland3.67%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil2.75%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland2.75%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds2.75%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil2.75%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.75%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere2.75%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.83%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil1.83%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.83%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.83%
PermafrostEnvironmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost1.83%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere1.83%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.92%
Iron-Sulfur Acid SpringEnvironmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring0.92%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil0.92%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.92%
Untreated Peat SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil0.92%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland0.92%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.92%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.92%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.92%
FenEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Fen0.92%
PalsaEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa0.92%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.92%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.92%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.92%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.92%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001356Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007EnvironmentalOpen in IMG/M
3300001546Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004091Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005330Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaGEnvironmentalOpen in IMG/M
3300005434Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaGEnvironmentalOpen in IMG/M
3300005436Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaGEnvironmentalOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005445Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaGEnvironmentalOpen in IMG/M
3300005455Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaGHost-AssociatedOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006052Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013EnvironmentalOpen in IMG/M
3300006102Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013EnvironmentalOpen in IMG/M
3300006174Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014EnvironmentalOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300009038Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaGEnvironmentalOpen in IMG/M
3300009088Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaGEnvironmentalOpen in IMG/M
3300009089Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaGEnvironmentalOpen in IMG/M
3300009093Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaGHost-AssociatedOpen in IMG/M
3300009521Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaGEnvironmentalOpen in IMG/M
3300009545Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaGHost-AssociatedOpen in IMG/M
3300009618Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_100EnvironmentalOpen in IMG/M
3300009698Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaGEnvironmentalOpen in IMG/M
3300009759Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_4_10EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010321Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010379Sb_50d combined assemblyEnvironmentalOpen in IMG/M
3300012189Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaGEnvironmentalOpen in IMG/M
3300012210Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaGEnvironmentalOpen in IMG/M
3300012357Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaGEnvironmentalOpen in IMG/M
3300012683Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaGEnvironmentalOpen in IMG/M
3300012917Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300013296Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaGHost-AssociatedOpen in IMG/M
3300014167Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaGEnvironmentalOpen in IMG/M
3300014501Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)EnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015265Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaGHost-AssociatedOpen in IMG/M
3300017924Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5EnvironmentalOpen in IMG/M
3300017936Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1EnvironmentalOpen in IMG/M
3300017938Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150EnvironmentalOpen in IMG/M
3300017943Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4EnvironmentalOpen in IMG/M
3300018007Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5EnvironmentalOpen in IMG/M
3300018019Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_150EnvironmentalOpen in IMG/M
3300018021Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_150EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300018085Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018468Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300021168Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-MEnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021181Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-OEnvironmentalOpen in IMG/M
3300021401Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-OEnvironmentalOpen in IMG/M
3300021407Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-OEnvironmentalOpen in IMG/M
3300021420Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-MEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300021474Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021479Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-MEnvironmentalOpen in IMG/M
3300021559Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022557Paint Pots_combined assemblyEnvironmentalOpen in IMG/M
3300025898Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025906Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025914Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025921Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025940Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025941Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026300Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm (SPAdes)EnvironmentalOpen in IMG/M
3300026330Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)EnvironmentalOpen in IMG/M
3300027505Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_O3 (SPAdes)EnvironmentalOpen in IMG/M
3300027583Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027662Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_2_FS metaG (SPAdes)EnvironmentalOpen in IMG/M
3300027681Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)EnvironmentalOpen in IMG/M
3300027738Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027795Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)EnvironmentalOpen in IMG/M
3300027812Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)EnvironmentalOpen in IMG/M
3300027889Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)EnvironmentalOpen in IMG/M
3300027905Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028780Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_2EnvironmentalOpen in IMG/M
3300029922III_Fen_E1 coassemblyEnvironmentalOpen in IMG/M
3300030494Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_3_AS metaG (v2)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031524Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3EnvironmentalOpen in IMG/M
3300031754Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515EnvironmentalOpen in IMG/M
3300032160Sb_50d combined assembly (MetaSPAdes)EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300034163Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12269J14319_1027739823300001356Peatlands SoilSIGNLQGPDYSMCLLGTARAQAQFDKAAAIKSYQQLLDIWKNADADFIPAQEARRELTGLTAPGK*
JGI12659J15293_1013195413300001546Forest SoilARAQAQFDKAAATKSYQQLLDIWKNADADFVPAQEARREFAALGVSAKN*
JGIcombinedJ51221_1034307113300003505Forest SoilDYALCLLGTARAQAQFDKTAAAKSYAQLLDIWKNADADFIPAQEARRELAALTAPKN*
Ga0062387_10045490413300004091Bog Forest SoilLCLLGTARAQAQLDKAAAIKSYQQLLDIWKNADGDFIPAREAKKELAALTAQP*
Ga0062595_10009748613300004479SoilGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN*
Ga0062594_10238686813300005093SoilTLCLLGTARAQSHLDKTAATKTYQQLLDIWKNADANFIPAQEAKRELAALQK*
Ga0070690_10001587683300005330Switchgrass RhizosphereCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN*
Ga0070709_1051452323300005434Corn, Switchgrass And Miscanthus RhizosphereALCLLGTARAQSKTDPAASARTYEQLLLLWKNADADFIPAQDARREQTALAAQKN*
Ga0070713_10236564823300005436Corn, Switchgrass And Miscanthus RhizosphereCLLGTARAQSHFDKADATRSYQQLLDIWKSADADFIPAQEARREFTALTAPGKN*
Ga0070705_10029798613300005440Corn, Switchgrass And Miscanthus RhizosphereAAQVPDYALCLLGAARAQSKTDPAASARTYEQLLLLWKNADADFIPAQDARREQTALAAQKN*
Ga0070694_10020493233300005444Corn, Switchgrass And Miscanthus RhizosphereGEGANGTSQVPDYALCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN*
Ga0070708_10015626513300005445Corn, Switchgrass And Miscanthus RhizosphereDYSLCLLGTARAQTQIDRAAATRSYEQLLKIWKNADADFIPAQEARRELATLTAQTKE*
Ga0070708_10096171913300005445Corn, Switchgrass And Miscanthus RhizosphereFQAPDYTLCLLGTARAQAQFDRPAAMRSYQQLLDIWKNADADFIPAQEAKREFAALGQSKN*
Ga0070663_10021219813300005455Corn RhizosphereLCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN*
Ga0068855_10037121833300005563Corn RhizosphereALCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN*
Ga0068856_10049773033300005614Corn RhizosphereAPDYVLCLLGTARAQAQFDKAAALQSYQKLLDIWKNADADFVPAQEARRELAALQAPGKS
Ga0068852_10127669113300005616Corn RhizosphereARAQAQTDPAAATRTYGQLLQIWKNADADFIPAQEARREQAALGGKN*
Ga0066696_1105094113300006032SoilALGEGAGGAVQAPDYSLCLLGTARAQAQFDKGAALKSYQQLLDVWKNADADFGPAQDAKRELAALNR*
Ga0075029_10023604933300006052WatershedsAPDYALCLLGTARAQTQTDRAAAERSYEQLLQIWKNADPDFIPAQEARREQTALAAQGKS
Ga0075015_10000817913300006102WatershedsGQTPDYALCLLGTARAQSHFDKGSAARSYQQLLDIWKNADADFVPLQEAKREFAALN*
Ga0075014_10008910353300006174WatershedsTGQTPDYALCLLGTARAQSHFDKGSAARSYQQLLDIWKNADADFVPLQEAKREFAALN*
Ga0075425_10000367413300006854Populus RhizosphereLGTARAQSRLDKAAATHSYHQLLDIWKNADFDFAPAQEAKREFATLSAPSVH*
Ga0075424_10213365823300006904Populus RhizosphereTARAQARFDKPAASRSYQQLLEIWKNADPDFIPVQEARREFAALK*
Ga0075436_10109438823300006914Populus RhizosphereSPDYALCLHGTARAQARFDKPAASRSYQQLLEIWKNADPDFIPVQEARREFAALK*
Ga0099829_1023827113300009038Vadose Zone SoilVGTAQAPDYALCLLGTARAQSHFDKAAANRSYQQLLDIWKNADSDFIPLQEAKRELAALK
Ga0099830_1102606813300009088Vadose Zone SoilAQVSDYALCLLGTARAQTQTDRAAATRSYEQLLQIWKNADADFIPAQEARREQGALAAQAKN*
Ga0099828_1094212913300009089Vadose Zone SoilARAQSHFDKAAATRSYQQLLDIWKSADADFIPAQEARREFTALTAPGKN*
Ga0105240_1127994113300009093Corn RhizosphereARFDKAAAARSYQQLLEIWRNADPDFIPVQEARREFAALK*
Ga0116222_141221313300009521Peatlands SoilVLCLLQTARAQAQFDKAAASKSYQQVLDLWKNADADFIPFEEAKREFAALSAQGKK*
Ga0105237_1035968633300009545Corn RhizosphereCLLGTARAQAQTDPAAATRTYGQLLQIWKNADADFIPAQEARREQAALGGKN*
Ga0116127_105107923300009618PeatlandGTARAEALFDRAAATRSYQQLLDIWKNADPDFIPAQEARRELSALTATSKN*
Ga0116216_1079865513300009698Peatlands SoilVLCLLQTARAQAQFDKTAASKSYQQVLDLWKNADADFIPFEEAKREFAALSAQGKK*
Ga0116101_101375433300009759PeatlandQEATNGGQVPDYALCLLGTARAQTQVDRGAAMRTYQQLLEIWKNADPDFIPAQDARREQSALTSTP*
Ga0116101_106067513300009759PeatlandGPQAPDYVLCLLGTARAQAQFDKAAATKTYTQLLDIWKNADPDFIPAQEAKRELAALNAPTKD*
Ga0126373_1014475753300010048Tropical Forest SoilGTARAQSHSDKSSAIRSYQQLLDIWKNADNDFVPAQEAKRELAELAKN*
Ga0134067_1000225163300010321Grasslands SoilPDYALCLLGTARAQSHFDKAAANRSYQQLLDIWKNADSDFIPLQEAKRELAALK*
Ga0126370_1169588213300010358Tropical Forest SoilAGGAAQAPDYSLCLLGTARAQAQFDKAAAIKSYQQILNMWKSADADFTPAQEARKEFAALSKN*
Ga0136449_10111088313300010379Peatlands SoilSTQSPDYGLCLLETARAQAQFDKAAATKSYQQLLDLWKNADADFIPLQQAKREFAALAAPAK*
Ga0136449_10387032623300010379Peatlands SoilVLCLLQTARAQAQFDKTAASKSYQQVLDLWKNADADFIPFEEAKREFAALSAQAKK*
Ga0137388_1072236013300012189Vadose Zone SoilEGPVGTEQAPDYTLCLLGTARAQTHFDKAAAMRSYQQLLEIWKNADPEFVPAQEAKRELVALSQAKN*
Ga0137378_1092845913300012210Vadose Zone SoilLQVPDYALCLLGTARAQSHFDKAAAIRSYQQLLDIWKNADSDFRPAQDAKRDLLALQQ*
Ga0137384_1005904313300012357Vadose Zone SoilVLSLLGTARAQSHFDKATAIRSYQQLLDIWRNADSDFVPAQDAKRELAALQK*
Ga0137384_1126516813300012357Vadose Zone SoilLQVPDYALCLLGTARAQSHFDKAAAIRSYQQLLDIWKNADSDFRPAQDAKRELLALQQ*
Ga0137398_1026678433300012683Vadose Zone SoilALCLLGTARAQTQTDRAAAARSYEQMLQLWKNADADFIPAQEARREQTALAALGKN*
Ga0137395_1046234613300012917Vadose Zone SoilAQARFDKSAAMRSYQQLLEIWKNADADFIPAQEAKREMAALKGSS*
Ga0137395_1109745113300012917Vadose Zone SoilARAQSQTDRAAAARSYEQLLQIWKNADADFIPAQEARREQTALAAQSKN*
Ga0164303_1051428513300012957SoilGTSQIPDYALCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN*
Ga0157374_1008367413300013296Miscanthus RhizosphereCLLGTARAQARFDKAAASRSYQQLLEIWKNADPDFIPAQEARREFAVLK*
Ga0181528_1019189023300014167BogLCLLGTARAQAMFDKAAAIKSYTQLLDIWKNADADFIPAQEAKRELSALTAH*
Ga0182024_1106528113300014501PermafrostCLLGTARAQAQYDHAAAARSYHQLLDIWKNADADFMPAQEARRELGELDSAAKN*
Ga0182024_1154195613300014501PermafrostARAQAQFDKAAASKSYQQLLDLWKNADADFIPLEQAKREVAGLAAPTK*
Ga0157379_1238114013300014968Switchgrass RhizosphereYALCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN*
Ga0182005_109387223300015265RhizosphereLLGTARAQAQFDKAAALQSYQKLLDIWKNADADFVPAQEARRELAALQAPGKS*
Ga0182005_129773513300015265RhizosphereSGGSIQSPDYALCLLGTARAQARFDKAAASRSYQQLLEIWKNADPDFIPAQEARREFAVLK*
Ga0187820_112849013300017924Freshwater SedimentTARAQAQFDKAAATKSYQQLLDIWKNADPDFAPAQEARREFAALNGQAKN
Ga0187820_117860523300017924Freshwater SedimentLLGTARAQAQFDKAAAAKSYQQLLDIWKNADADFVLAQDARREFAALSGVGKN
Ga0187821_1019690123300017936Freshwater SedimentDGPAGNPQVPDYPLCLLGTARAQSHFDKAAAVQSYQKLLDIWKNADPDFVPAQEARHEMTSLQK
Ga0187854_1033453613300017938PeatlandARAQAQFDRTAAARTYQQLLDIWKNADADFIPAQEARREMAALTTPAKN
Ga0187819_1026637733300017943Freshwater SedimentLLGTARAQTQFDRAAATRSYQQLLDIWKNADADFIPAQEAKRELAALTAQAKN
Ga0187805_1045978823300018007Freshwater SedimentGTARAQAQFDKTAAAKSYQQLLDIWKNADADFVLAQDARREFAALSGVGKN
Ga0187874_1045550613300018019PeatlandLLGTARAQAQFDKTAATKSYTQLLDIWKNADADFIPAQEARHELAALTVASKN
Ga0187882_114066023300018021PeatlandVLCLLGTARAQTQFDRAAATRSYQQLLDIWKNADPDFIPAQEARRELATLSKNKQ
Ga0187851_1011684623300018046PeatlandLCLLGTARAQAMFDKAAAIKSYTQLLDIWKNADADFIPAQEAKRELSALTAH
Ga0187772_1084657913300018085Tropical PeatlandTARAQAQFDKAAAIKSYQQLLDIWKNADADFVPSQEARRELTALTAPAKN
Ga0066662_1191328913300018468Grasslands SoilPDYALCLLGTARAQSHLDKAAATRSYQQLLDIWKNADSDFIPLQEAKRELAALK
Ga0193751_107576513300019888SoilARAQSHFDKAAATRSYQQLLDVWKNADADFIPAQEARREFTALTAPGKN
Ga0210406_1136232613300021168SoilLCLLGTARAQTQADPAAAGRTYEQLLQIWKNADADFIPAQEARREQAALAAQKN
Ga0210408_1091215713300021178SoilLGTARAQTQIDRAAATRSYEQLLLLWKNADPDFIPAQEARREQTALAAVSKN
Ga0210388_1032359613300021181SoilPLCLLGTARAQAQFDKAAAIKSYQQLLNIWKNADADFIPAQEAKREFAALNAPAKN
Ga0210393_1068186113300021401SoilTSGAAQAPDYILCLLGTARAQAQFDKPAAIKTYTQLLDIWKNADPDFIPALEAKRELAALTASAKN
Ga0210383_1121847213300021407SoilLLETARAQAQFDKPAAAKSYTQLLDIWKNADADFIPAQEAKRELAALTNQAN
Ga0210394_1154606613300021420SoilLCLLGTARAQSQTDRAAAGRSYEQLLLLWKNADPDFIPAQEARREQTALGAQK
Ga0210384_1078875613300021432SoilTARAQALFDQAAAARTYRQLLDIWKNADADFIPAQEAQRELAALTARPKN
Ga0210390_1113285823300021474SoilCLLGTARAQAQFDKAAATKSYQQLFDIWKNADADFVPAQEARREFAALGVSAKN
Ga0210402_1016105143300021478SoilPLCLLGTARAQAQFDKAAAVKSYQQLLDIWKSADADFIPAQEARRELTALTSPSKN
Ga0210410_1180333413300021479SoilLETARAQAQFDKPAAAKSYTQLLDIWKNADADFIPAQEAKRELAALTNQAN
Ga0210409_1039652313300021559SoilQVPDYALCLLGTARAQAQTDPAAANRTYQQLLQLWKNADADFIPAQEARRELAALAGQGK
Ga0126371_1246931613300021560Tropical Forest SoilSLGEGGTGAAQAPDYILCLLGTARAQAQFDKGSAIKTYNQLLDFWKNADADFVPAQEARKELSSVAKP
Ga0212123_1030240613300022557Iron-Sulfur Acid SpringLCLLGTARAQAQFDKAAAAQSYRKLLDIWKNADADFIPAQEARRESAALTASPKN
Ga0207692_1016279533300025898Corn, Switchgrass And Miscanthus RhizosphereDYVLCLLGTARGQAQIDQDAAAKSYGELLEMWKNADPDFVPAQEARRESAGLRKH
Ga0207699_1008387623300025906Corn, Switchgrass And Miscanthus RhizosphereQAQFDRGAATRNYQQLLDLWKGADADFIPAQEARREFAALSTQSKN
Ga0207671_1002172383300025914Corn RhizosphereCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN
Ga0207652_1176047113300025921Corn RhizosphereYALCLLGTARAQTQTDPAAAARTYEQLLQLWKSADADFIPAQEARREQAALAAQGK
Ga0207691_1154122313300025940Miscanthus RhizosphereGTSQIPDYALCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN
Ga0207711_10017388103300025941Switchgrass RhizosphereLCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN
Ga0207668_1072834013300025972Switchgrass RhizosphereDYALCLLGTARAQTQTDPAAAARTYEQLLQLWKNADADFIPAQEARREQAALSALGKN
Ga0207702_1083746723300026078Corn RhizosphereGTARAQARFDKPAASRSYQQLLEIWKNADPDFIPVQEARREFAALK
Ga0207702_1099568313300026078Corn RhizosphereMAPDYVLCLLGTARAQAQFDKAAALQSYQKLLDIWKNADADFVPAQEARRELAALQAPGK
Ga0209027_129535013300026300Grasslands SoilGTARAQGQFDKAAATRSYQQLLDIWKNADSDFIPAQEAKRELAALTGQANN
Ga0209473_118253213300026330SoilLLGTARAQTQIDRAAATRSYEQLLQIWKNADADFIPAQEARRELAALAAQPKN
Ga0209218_111268413300027505Forest SoilAPDYPLCLLGTARAQAQFDKAAAIKSYQQLLDIWKNADADFFPAQEAKREFAALNAPAKN
Ga0209527_114027513300027583Forest SoilSLCLLGTARAQTQADPAAAGRTYEQLLQIWKNADADFIPAQEARRELAALTAQARN
Ga0208565_117144623300027662Peatlands SoilGTSQAPDYVLCLLETARAQALFDQAAATRSYQQLLDIWKNADADFIPAQEAKRELAALSAGAKN
Ga0208991_101694113300027681Forest SoilLCLLATARAQSHFDKAAATRSYQQLLEIWKNADADFVPAQEAKRELAALSQTKN
Ga0208989_1002065013300027738Forest SoilYTERAQSHLDKGAATRTYQQLLEIWKDADADFIPAQEAKREMAALKSSS
Ga0209139_1020115813300027795Bog Forest SoilPDYSLCLLGTARAQAQLDKAAAIKSYQQLLDIWKNADGDFIPAREAKKELAALTAQP
Ga0209656_1029067923300027812Bog Forest SoilDYAICLLGTARAQAQFDRPAATRSYQQLLEIWKNADADFIPAQEARRELAALSSSKN
Ga0209380_1006782623300027889SoilPDYPLCLLGTARAQAQFDKAAAIKSYQQLLDIWKNADADFIPAQEAKREFAALNAPAKN
Ga0209415_1017989513300027905Peatlands SoilGTGGTSQAPDYVLCLLETARAQALFDQAAATRSYQQLLDIWKNADADFIPAQEAKRELAALSAGAKN
Ga0137415_1053310323300028536Vadose Zone SoilGEGATGVSQVPDYALCLLGTARAQTQIDRAAATRSYEQLLQLWKNADADFIPAQEARREQTALAAQSKN
Ga0302225_1020787123300028780PalsaQAPDYVLCLLGTARAQAQFDRAAATRSYQQVLEIWKNADADFIPAQEARRELAALSAPSK
Ga0311363_1041358213300029922FenARAQAQFDRTAAARTYQELLDIWKNADADFIPAQEARREMAALTAPAKN
Ga0310037_1018645923300030494Peatlands SoilSAQAPDYALCLLGTARAQAQFDKAAATKSYTQLLDIWKNADADFVPAQESRRELAALAATAKN
Ga0170823_1266187423300031128Forest SoilFFYFIQAQFDRAAATRSYTQLQDIWKNADADFIPAQEAKRELAALTAQAKN
Ga0302320_1195868213300031524BogCLLGTARAQTQVDRGAAMRTYQQLLEIWKNADPDFIPAQDARREQSALTSTP
Ga0307475_1095322113300031754Hardwood Forest SoilPDYVFCLLGTARAQAQLDKAAATRSYLQLLDIWKNADADFIPAQEAKRELAALQAKN
Ga0311301_1274425023300032160Peatlands SoilEGNTGSTQSPDYGLCLLETARAQAQFDKAAATKSYQQLLDLWKNADADFIPLQQAKREFAALAAPAK
Ga0307471_10206793823300032180Hardwood Forest SoilGEGATGAAQVPDYALCLLGTARAQSKTDPAASARTYEQLLLLWKNADADFIPAQDARREQTALAAQKN
Ga0370515_0119291_50_2203300034163Untreated Peat SoilMLGTARAQAQVDKTAAIATYQKLLDVWKNADADYAPARDAKKEMAALQTGVQPSAH


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.