Metagenome Family F089268

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089268
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	80 residues
Representative Sequence	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPIGASAALITLGVWAV
Number of Associated Samples	79
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	24.27 %
% of genes near scaffold ends (potentially truncated)	91.74 %
% of genes from short scaffolds (< 2000 bps)	83.49 %
Associated GOLD sequencing projects	77
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (58.716 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (61.468 % of family members)
Environment Ontology (ENVO)	Unclassified (69.725 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (66.055 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.35% β-sheet: 0.00% Coil/Unstructured: 33.65%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF10459	Peptidase_S46	50.46
PF00497	SBP_bac_3	3.67
PF05228	CHASE4	0.92
PF07859	Abhydrolase_3	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0657	Acetyl esterase/lipase	Lipid transport and metabolism [I]	0.92
COG3322	Extracellular (periplasmic) sensor domain CHASE (specificity unknown)	Signal transduction mechanisms [T]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.72 %
Unclassified	root	N/A	41.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.72 %
Unclassified	root	N/A	41.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.72 %
Unclassified	root	N/A	41.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.19 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	23.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.34 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.34 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	4.59 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.34 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	4.59 %
unclassified Rhodospirillales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.34 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	4.59 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.34 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	4.59 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	1.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.28 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	7.34 %
Sphingomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	4.59 %
Rhodospirillales bacterium 20-64-7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	1.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001867\|JGI12627J18819_10225036	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300004633\|Ga0066395_10118592	All Organisms → cellular organisms → Bacteria	1302	Open in IMG/M
3300005332\|Ga0066388_100731300	All Organisms → cellular organisms → Bacteria	1592	Open in IMG/M
3300005439\|Ga0070711_100117482	All Organisms → cellular organisms → Bacteria	1962	Open in IMG/M
3300005764\|Ga0066903_106977886	Not Available	586	Open in IMG/M
3300005764\|Ga0066903_108997080	Not Available	506	Open in IMG/M
3300006175\|Ga0070712_100558782	Not Available	965	Open in IMG/M
3300006237\|Ga0097621_100609926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	998	Open in IMG/M
3300006954\|Ga0079219_11717988	Not Available	582	Open in IMG/M
3300010043\|Ga0126380_10305507	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300010046\|Ga0126384_12359087	Not Available	514	Open in IMG/M
3300010371\|Ga0134125_11491250	Not Available	737	Open in IMG/M
3300010376\|Ga0126381_100175543	All Organisms → cellular organisms → Bacteria	2841	Open in IMG/M
3300010376\|Ga0126381_101412154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1006	Open in IMG/M
3300010376\|Ga0126381_102344696	Not Available	766	Open in IMG/M
3300010376\|Ga0126381_102714891	All Organisms → cellular organisms → Bacteria	708	Open in IMG/M
3300010376\|Ga0126381_103863284	Not Available	585	Open in IMG/M
3300012971\|Ga0126369_11121858	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	876	Open in IMG/M
3300014969\|Ga0157376_12291427	Not Available	579	Open in IMG/M
3300015374\|Ga0132255_100177916	All Organisms → cellular organisms → Bacteria	2993	Open in IMG/M
3300015374\|Ga0132255_103755485	Not Available	645	Open in IMG/M
3300016319\|Ga0182033_11985172	Not Available	530	Open in IMG/M
3300016319\|Ga0182033_12034378	Not Available	523	Open in IMG/M
3300017959\|Ga0187779_10058591	All Organisms → cellular organisms → Bacteria	2258	Open in IMG/M
3300017959\|Ga0187779_10933041	Not Available	599	Open in IMG/M
3300021439\|Ga0213879_10125004	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	734	Open in IMG/M
3300021441\|Ga0213871_10177177	Not Available	658	Open in IMG/M
3300021560\|Ga0126371_12111527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	679	Open in IMG/M
3300025931\|Ga0207644_10938820	Not Available	725	Open in IMG/M
3300027874\|Ga0209465_10068093	All Organisms → cellular organisms → Bacteria	1723	Open in IMG/M
3300031543\|Ga0318516_10414834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	775	Open in IMG/M
3300031544\|Ga0318534_10082895	All Organisms → cellular organisms → Bacteria	1824	Open in IMG/M
3300031544\|Ga0318534_10150183	All Organisms → cellular organisms → Bacteria	1344	Open in IMG/M
3300031544\|Ga0318534_10400186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	789	Open in IMG/M
3300031545\|Ga0318541_10057885	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2006	Open in IMG/M
3300031549\|Ga0318571_10425486	Not Available	522	Open in IMG/M
3300031561\|Ga0318528_10206372	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1052	Open in IMG/M
3300031573\|Ga0310915_10301011	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1133	Open in IMG/M
3300031668\|Ga0318542_10186760	Not Available	1042	Open in IMG/M
3300031713\|Ga0318496_10393680	Not Available	766	Open in IMG/M
3300031715\|Ga0307476_10090589	All Organisms → cellular organisms → Bacteria	2146	Open in IMG/M
3300031720\|Ga0307469_10037072	All Organisms → cellular organisms → Bacteria	2914	Open in IMG/M
3300031723\|Ga0318493_10057118	All Organisms → cellular organisms → Bacteria	1865	Open in IMG/M
3300031723\|Ga0318493_10638326	Not Available	595	Open in IMG/M
3300031724\|Ga0318500_10423141	Not Available	664	Open in IMG/M
3300031724\|Ga0318500_10710949	Not Available	512	Open in IMG/M
3300031736\|Ga0318501_10142288	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300031744\|Ga0306918_10122438	All Organisms → cellular organisms → Bacteria	1887	Open in IMG/M
3300031763\|Ga0318537_10055962	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1436	Open in IMG/M
3300031764\|Ga0318535_10543162	Not Available	516	Open in IMG/M
3300031768\|Ga0318509_10179333	All Organisms → cellular organisms → Bacteria	1175	Open in IMG/M
3300031770\|Ga0318521_10206271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1136	Open in IMG/M
3300031771\|Ga0318546_10173462	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300031778\|Ga0318498_10115069	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300031779\|Ga0318566_10090578	All Organisms → cellular organisms → Bacteria	1494	Open in IMG/M
3300031779\|Ga0318566_10170517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1080	Open in IMG/M
3300031779\|Ga0318566_10191955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1014	Open in IMG/M
3300031779\|Ga0318566_10460932	Not Available	624	Open in IMG/M
3300031782\|Ga0318552_10291283	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	830	Open in IMG/M
3300031793\|Ga0318548_10135839	All Organisms → cellular organisms → Bacteria	1194	Open in IMG/M
3300031796\|Ga0318576_10206051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	925	Open in IMG/M
3300031820\|Ga0307473_11122390	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	580	Open in IMG/M
3300031833\|Ga0310917_10380561	Not Available	959	Open in IMG/M
3300031845\|Ga0318511_10613098	Not Available	508	Open in IMG/M
3300031846\|Ga0318512_10066040	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1645	Open in IMG/M
3300031846\|Ga0318512_10650126	Not Available	539	Open in IMG/M
3300031859\|Ga0318527_10228123	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300031859\|Ga0318527_10293305	Not Available	692	Open in IMG/M
3300031859\|Ga0318527_10481617	Not Available	529	Open in IMG/M
3300031879\|Ga0306919_10872047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	690	Open in IMG/M
3300031880\|Ga0318544_10049417	All Organisms → cellular organisms → Bacteria	1515	Open in IMG/M
3300031880\|Ga0318544_10428860	Not Available	514	Open in IMG/M
3300031897\|Ga0318520_10061246	All Organisms → cellular organisms → Bacteria	2012	Open in IMG/M
3300031897\|Ga0318520_10077928	All Organisms → cellular organisms → Bacteria	1814	Open in IMG/M
3300031941\|Ga0310912_10524172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	923	Open in IMG/M
3300031945\|Ga0310913_10073917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2264	Open in IMG/M
3300031945\|Ga0310913_10078274	All Organisms → cellular organisms → Bacteria	2204	Open in IMG/M
3300031946\|Ga0310910_10540370	Not Available	925	Open in IMG/M
3300031947\|Ga0310909_11074277	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	655	Open in IMG/M
3300031947\|Ga0310909_11436369	Not Available	551	Open in IMG/M
3300031959\|Ga0318530_10251423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	728	Open in IMG/M
3300031959\|Ga0318530_10387438	Not Available	579	Open in IMG/M
3300032001\|Ga0306922_10012621	All Organisms → cellular organisms → Bacteria	8308	Open in IMG/M
3300032008\|Ga0318562_10769068	Not Available	552	Open in IMG/M
3300032025\|Ga0318507_10182271	Not Available	904	Open in IMG/M
3300032039\|Ga0318559_10318397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	723	Open in IMG/M
3300032042\|Ga0318545_10140936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	855	Open in IMG/M
3300032052\|Ga0318506_10241273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	800	Open in IMG/M
3300032054\|Ga0318570_10291847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp.	741	Open in IMG/M
3300032054\|Ga0318570_10339090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → unclassified Rhodospirillales → Rhodospirillales bacterium 20-64-7	684	Open in IMG/M
3300032055\|Ga0318575_10014054	All Organisms → cellular organisms → Bacteria	3189	Open in IMG/M
3300032055\|Ga0318575_10511739	Not Available	609	Open in IMG/M
3300032064\|Ga0318510_10261147	Not Available	714	Open in IMG/M
3300032067\|Ga0318524_10043663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2114	Open in IMG/M
3300032067\|Ga0318524_10174742	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1093	Open in IMG/M
3300032076\|Ga0306924_11216953	Not Available	814	Open in IMG/M
3300032090\|Ga0318518_10357669	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300032091\|Ga0318577_10176589	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1020	Open in IMG/M
3300032261\|Ga0306920_102034414	All Organisms → cellular organisms → Bacteria	804	Open in IMG/M
3300032955\|Ga0335076_11235762	Not Available	631	Open in IMG/M
3300033289\|Ga0310914_10223163	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1688	Open in IMG/M
3300033290\|Ga0318519_10345131	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	879	Open in IMG/M
3300033805\|Ga0314864_0171752	Not Available	558	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.50%
Plants	Host-Associated → Plants	5.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.75%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.83%
Roots	Host-Associated → Plants → Roots	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.49%
Loam	Environmental → Terrestrial → Soil → Loam	7.34%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	72.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	61.47%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.75%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.92%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300021439	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R03	Environmental	Open in IMG/M
3300021441	Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1	Host-Associated	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300033805	Tropical peat soil microbial communities from peatlands in Loreto, Peru - MAQ_50_10	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12627J18819_102250362	3300001867	Forest Soil	MSMTQLIIGTALGFIVAQSGLYGIRHSLGWLQREEVRTRLRALTPSPGHAIVAAGFIRYAAPIGATVALITLGVWAVGDYLALKAAGSPALASSLDSRAAVPP
Ga0066395_101185921	3300004633	Tropical Forest Soil	MGMTQLIIGTALGFVIVQSALHGLRYSFGWLQRAEVRTSIRAVIPSTGQVFVAGFIRYAAPIAASAALITLGVWAVGDYLSAKAAR
Ga0066388_1007313001	3300005332	Tropical Forest Soil	MYTVPVMSMIQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTLPGHVIVGGFIRYAAPIGAVAALITLGVWALGDYMAAKAAHSAALADTLD
Ga0070711_1001174823	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTLPGHVIVGGFIRYAAPIGAVAALITLGVWALG
Ga0066903_1069778862	3300005764	Tropical Forest Soil	MQTVLVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARIRAMTPSAGHAVVAGFIRYAAPLGAAAALITLAVWGIGDYMAAK
Ga0066903_1089970801	3300005764	Tropical Forest Soil	MSMTQLIIGTALGFVIAQSALYGLRYSFGWLQRAELRTHLRAMTPSTGHVFVAGFIRYAAPIAASAALITLGVWAV
Ga0070712_1005587822	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLARQICTHTVPVMTMMQLIIGTALGFVVAQSGLYGITHSLGWLQREEVSTRVRNLPGHIIVGGFIRYAAPIGAAAALITLGVWGVGDYIAAK
Ga0097621_1006099262	3300006237	Miscanthus Rhizosphere	MYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTLPGHVIVGGFIRYAAPIGAVAALITLGVWALGDYMAA
Ga0079219_117179881	3300006954	Agricultural Soil	MYTVPIMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTMPGHVIVGGFIRYAAPIGAVAALIALGVWA
Ga0126380_103055072	3300010043	Tropical Forest Soil	MGMTQLIIGTALGFVIAQSALYGLRYSFGLLQREEVRTRIRAMTPATGQVFVAGFIRYAAPIAASAALITLAVWAVGDYLSANSARTA
Ga0126384_123590871	3300010046	Tropical Forest Soil	MYTVPVMSMIQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTLPGHVIVGGFIRYAAPIGAVAALITLGVWALGDYMAAKAAHSVALTNTLDPTTSAAGAPQASP
Ga0134125_114912501	3300010371	Terrestrial Soil	MLARQICTHTVPVMTMMQLIIGTALGFVVAQSGLYGITHSLGWLQREEVSTRVRNLPGHIIVGGFIRYAAPIGAAAALITLGAWGVGDYIAAKATRNVT
Ga0126381_1001755431	3300010376	Tropical Forest Soil	MSMTQLVVGTAIGFLAAQAGLYGMKHLLGWLQREETRARLGTLIPSPGHTILSAFIRYAAPIGASAALITLGVWAVG
Ga0126381_1014121541	3300010376	Tropical Forest Soil	MSMTQLIIGTALGFIVAQSGLYGIRHSLGWLKREEVRTRLRALTPSPGHAIVAGFVRYAAPIGATVALITLGVWAVGDYLALKAARSAAL
Ga0126381_1023446962	3300010376	Tropical Forest Soil	MSMTQLIIGTALGFVVAQSALHALRYSFGWLQREEVRTRIRALTPTPGHAFVAGFIRYAAPIGASAALVTLAVWAVGDYLAANAVPSAA
Ga0126381_1027148912	3300010376	Tropical Forest Soil	MSMTQLVVGTAIGFLAAQAGLYGIKHLLGWLQREETRARLGTLIPSPGHAILSAFIRYAAPIGASAALITLGVWAVG
Ga0126381_1038632841	3300010376	Tropical Forest Soil	MSMTQLIIGTALGFVIAQSALYGLRYSFVWLLREEVRTRIRAMTPSPGHAFVAGFIRYAAPIGASAAVITLGIWA
Ga0126369_111218581	3300012971	Tropical Forest Soil	MSMTQLIVSAALGFVIAQSALHGIRYSFAWLQREEVRTRIRAMTPSPGHAFVAGFIRYAAPIGASAALITLGIWAV
Ga0157376_122914272	3300014969	Miscanthus Rhizosphere	MYTVPIMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTLPGHVIVDGFIRYAAPIGAVAALIALGVGALGDYMAAK
Ga0132255_1001779161	3300015374	Arabidopsis Rhizosphere	MYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTLPGHVIVGGFIRYAAPIGAVAALITLGVWALGDYMAAKA
Ga0132255_1037554852	3300015374	Arabidopsis Rhizosphere	MLAWQICTHTVPVMTMMQLIIGTALGFIAAQSGLYGIRHSLGWLQREEVSTRVRALPGHVIVGGFIRYAAPIGAAA
Ga0182033_112262071	3300016319	Soil	MQLVIGTALGFVIAQSGLYGIRHSLGWLQREEFSTRIRTLPGHVIVAGFIRYAAPIGAV
Ga0182033_119851722	3300016319	Soil	MGMAQLIIATALGFIVAQSGLYGIRQSLGWLQREDVRTRIRALTPFPGHALVTGFLRYAAPIGACAALI
Ga0182033_120343781	3300016319	Soil	MSMTQLIIGTALGFVVAQSALYALRYSFGWLQREEVRTRIRALTPTPGHGFVAGFIRYAAPIGASAAV
Ga0182040_105614631	3300016387	Soil	MYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEFSTRIRTLPGHVIVAGFIRYAAPIGAV
Ga0187779_100585912	3300017959	Tropical Peatland	MSMMQLILGTALGFVTAQSALYGLRHSFGWLQREEVRTRIRAMTPPTGHVFVAGFIRYAAPIGASAALITLGVWAVGDYLSARAAHGTALTGALDPASAAT
Ga0187779_109330412	3300017959	Tropical Peatland	MSMAQLVIATALGFVVAQGVLYSARQFAGWLQRDEVRSRIHALAPSPGRVIVAGFVRYAAPIGAGAALITLGVWAVSDYLAA
Ga0213879_101250041	3300021439	Bulk Soil	MNMMQLILGTALGFIVAQSGLYGIGHSLRWLQREEVRTRVRTMPGHVIVGGFIRYAAPIGAAAAL
Ga0213871_101771771	3300021441	Rhizosphere	MSMTQLIVGTALGFIVAQSGLYGIRHSLGWLQREEMRTRVRNMPGHVIVGGFIRYAAPIGAAAAL
Ga0126371_121115271	3300021560	Tropical Forest Soil	MYTVPVMSMIQLVIGTALGFVIAQSGLYGIRHSLGWLQREEIRTRIRTLPGHVIVGGFIRYAAPIGAVAALITRGVWALGDYM
Ga0207644_109388202	3300025931	Switchgrass Rhizosphere	MLARQICTDTVPVMTMMQLIIGTALGFVVAQSGLYGITHSLGWLQREEVSTRVRNLPGHIIVGGFIRYAAPIGAAAALITLGVWGVGDYIAAKATRNVTLASAVDSTT
Ga0209465_100680931	3300027874	Tropical Forest Soil	MGMTQLIIGTALGFGIAQSALYGLRYSFGWLQRAEVRTSIRAVIPSTGQVFVAGFIRYAAPIAASAALI
Ga0318516_104148341	3300031543	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAALITLGVWAVGDYLAATAARTAALA
Ga0318534_100828951	3300031544	Soil	MSMTQLIVSAALGFVIAQSALYGIRYSLAWLQREEVRTRIRAMTPSPGHAFVAGFIRYAAPIGASAALITLGFWAVGDYLSAKAARNAALASAV
Ga0318534_101501831	3300031544	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAALITLGVWAVGDYLAAKAARTPSV
Ga0318534_104001862	3300031544	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALIT
Ga0318541_100578851	3300031545	Soil	MSMTQLIIGTALGFVVAQSALYALRYSFGWLQREEVRTRIRALTPTPGHAFVAGFIRYAAPIGAS
Ga0318571_104254862	3300031549	Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARLRAMTPSPGHAVVAGFIR
Ga0318528_102063723	3300031561	Soil	MGMTQLIIGTALGFVVAQSALYGLRHSFGWLQREQVRTRIRAMTPSPGHAIVAGFIRYAAPIGASAALI
Ga0310915_103010111	3300031573	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALITLMVW
Ga0318542_101867602	3300031668	Soil	MSMTQLIISAALGFVIAQSALYGLRYSFAWLRREDVRTRIRAMTPSHGPAFFAGFIRYAAPIGASAALITLGVWAVGDYL
Ga0318572_104480362	3300031681	Soil	MYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEFSTRIRTLPGHVIVAGFIR
Ga0318496_103936802	3300031713	Soil	MSMTQLIIGTALGFVVAQSALHALRYSFGWLQREEVRTRIRALTPTPGHAFVAGFIRYAAPIG
Ga0307476_100905892	3300031715	Hardwood Forest Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQSDQVATRVRAMTPSPGHAVVAGFIRYAAPLGAA
Ga0307469_100370721	3300031720	Hardwood Forest Soil	MSMTQLIIGTALGFVVAQSGLYGIRHSLGWLQREELRTHIRTLPGHVIVSGFIRYAAPIGAAAALITLSVWAFGDYMAAKATRSTTLASTL
Ga0318493_100571181	3300031723	Soil	MSMTQLIISAALGFAIAQSALYGLRYFFAWLRREDVRTRIRAMTPSHGPAFFAGFIRYAAPIGASAALITLGVWAVGDYLSAKAARTAALAS
Ga0318493_106383261	3300031723	Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARLRAMTPSPGHAVVAGFIRYAA
Ga0318500_104231411	3300031724	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALITLGVWAVGDYLAAKASRTVALATTLDSTTVAGVTAPQGSA
Ga0318500_107109491	3300031724	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALITLM
Ga0318501_101422881	3300031736	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALITLGVWAVGDYLAAKASRTVALATT
Ga0318501_106400711	3300031736	Soil	MSMTQLIIGTALGFVVAQSVLHGLRHSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPIGASA
Ga0306918_101224382	3300031744	Soil	MSMTQLIVSAALGFVIAQSALYGIRYSLAWLQREEVRTRIRAMTPSPGHAFVAGFIRYAAPIGASAALITLGVWA
Ga0318537_100559621	3300031763	Soil	MSMTQLIIGTALGFVVAQSALYALRYSFGWLQREEVRTRIRALTPTPGHAFVAGFIRYAAPIGASAAVITLAVWAVGDYFAAKAAQSAVLA
Ga0318535_105431621	3300031764	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAALITLGVWAVGDYLAAK
Ga0318509_101793332	3300031768	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALITLGVWAVGDYLAAKA
Ga0318521_102062711	3300031770	Soil	MSMMQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALITLMVW
Ga0318546_101734621	3300031771	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALITLGVWAVGDYLAAKASRTVALATTLDSTTVA
Ga0318498_101150692	3300031778	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAA
Ga0318566_100905782	3300031779	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALITLMV
Ga0318566_101705172	3300031779	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALITLGVWAVGDYLAAKASRT
Ga0318566_101919552	3300031779	Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARLRAMTPSPGHAVVAGFIRYAAPLGAAAALIT
Ga0318566_104609321	3300031779	Soil	MSELPPQNACLADHARTVLVMSMTQLIICAALGFVIAQSALYGLRYSFAWLRREDVRTRIRAMTPSHGPAFFAGFIRYAAPIGASAALITLGVWAVGDYLSAKAARTAALASA
Ga0318552_102912831	3300031782	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALITLMVWAVGDYLAARAARSAALTG
Ga0318548_101358391	3300031793	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGA
Ga0318576_102060511	3300031796	Soil	MSMTQLIISAALGFVIAQSALYGLRYSFAWLRREDVRTRIRAMTPSHGPAFFAGFIRYAAPIGASAALITLGVW
Ga0307473_111223901	3300031820	Hardwood Forest Soil	MHTVPVMTMTQLIIGTALGFLVAQSGLYGIRHSLGWLQREEVRTHIRTLPGHVIVGGFIRYAAPIGAVAALITLGVWAFGDYIAAKAARSATLANT
Ga0310917_103805611	3300031833	Soil	MGMAQLIIATALGFIVAQSGLYGIRQSLGWLQREDVRTRIRALTPFPGHALVTGFLRYAAPIGACAALITLGVWGVGDYLAAKAARNGA
Ga0310917_107821331	3300031833	Soil	MSMTQLIIGTALGFVVAQSVLHGLRHSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRY
Ga0318511_106130981	3300031845	Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARLRAMTPSPGHAVVAGFIRYAAPLGAAAALITLA
Ga0318512_100660402	3300031846	Soil	MSMTQLIIGTALGFVVAQSALYALRYSFGWLQREEVRTRIRALTPTPGHGFVAGFIRYAAPIGASAAVITLAVWAVGDYFAAKAAQSAVLAGSLHG
Ga0318512_106501261	3300031846	Soil	MGMTQLIIGTALGFVVAQSALYGLRHSFGWLQREQVRTRIRAMTPSPGHAIVAGFIRYAAPI
Ga0318527_102281231	3300031859	Soil	MSMTQLIVSAALGFVIAQSALYGIRYSLAWLQREEVRTRIRAMTPSPGHAFVAGFIRYAAPIGASAALITLGVWAVGDYLAARAARTAA
Ga0318527_102933051	3300031859	Soil	MSMTQLIIGTALGFVVAQSVLHGLRHSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPIGASAALVTLGVWAVGDYLAAKAARSATLA
Ga0318527_104816172	3300031859	Soil	MGMAQLIIATALGFIVAQSGLYGIRQSLGWLQREDVRTRIRALTPFPGHALVTGFLRYAAPIGACAALITLGVW
Ga0306919_108720472	3300031879	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAAL
Ga0318544_100494172	3300031880	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAALITLGVWAVGDY
Ga0318544_104288601	3300031880	Soil	MSMTQLIIGTALGFVVAQSALYALRYSFGWLQREEVRTRIRALTPTPGHAFVAGFIRYAAPIGASAALITLAVWAVGDYLAAKA
Ga0318520_100612462	3300031897	Soil	MSMTQLIVSAALGFVIAQSALYGIRYSLAWLQREEVRTRIRAMTPSPGHAFVAGFIRYAAPIGASAALITLGVWAVGDYLAARAARTAALAS
Ga0318520_100779281	3300031897	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPIGASAALITLGVWAV
Ga0310912_105241721	3300031941	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALIT
Ga0310913_100739171	3300031945	Soil	MSMTQLIIGTALGFVVAQSALYALRYSFGWLQREEVRTRIRALTPTPGHAFVAGFIRYAAPIG
Ga0310913_100782741	3300031945	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAALITLGVWAVGDYLAAKAARTGA
Ga0310910_105403701	3300031946	Soil	MGMTQLIIGTALGFVVAQSALYGLRHSFGWLQREHVRTRIRATTPWRGHAIVAGFIRYAAPIGASAALITLGVWAVGDYLSAKAARGA
Ga0310909_110742772	3300031947	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALITLGV
Ga0310909_114363692	3300031947	Soil	MGMAQLIIATALGFIVAQSGLYGIRQSLGWLQREDVRTRIRALTPFPGHALVTGFLRYAAPIGACAALITLGVWGVGD
Ga0318530_102514231	3300031959	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAALITLG
Ga0318530_103874381	3300031959	Soil	MMSELPPQNACLADHARTVLVMSMTQLIISAALGFVIAQSALYGLRYSFAWLRREDVRTRIRAMTPSHGPAFFAGFIRYAAPIGASAALITLGVWAVGDYLSAKAARTAALAS
Ga0306922_100126219	3300032001	Soil	MSMTQLIVSAALGFVIAQSALYGIRYSLAWLQREEVRTRIRAMTPSPGHAFVAGFIRYAA
Ga0318562_107690681	3300032008	Soil	MYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEFSTRIRTLPGHVIVAGFIRYAAPIGAVAALIALGVWALGDYMAAKAARGAALTNTLD
Ga0318507_101822711	3300032025	Soil	MSMTQLIIGTALGFVVAQSVLHGLRHSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPIGASAALVTLGVWAVGDYLAAKAARSAT
Ga0318559_103183971	3300032039	Soil	MSMTQLIISAALGFVIAQSALYGLRYSFAWLRREDVRTRIRAMTPSHGPAFFAGFIRYAAPIGASAALITLGVWAVGDYLSAK
Ga0318545_101409362	3300032042	Soil	MSMMQLIIGTALGFVVAQSALYGLRYSFGWLQREQVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALITLMV
Ga0318506_102412732	3300032052	Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARLRAMTPSPGHAVVAGFIRYAAPLGAAAALITLAVWGIGDY
Ga0318506_104848352	3300032052	Soil	VNCTAKCFPGRPRMYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEFSTRIRTLPGHVIVAGFI
Ga0318570_102918472	3300032054	Soil	MTMMQLIIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAGAALITLGVWAVGDYLAAKAART
Ga0318570_103390902	3300032054	Soil	MSMTQLIIGTALGFVVAQSALYGLRYSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPLGASAALITLMVWAVGDYLAARAARSAAL
Ga0318575_100140541	3300032055	Soil	MYTVPVMSMMQLVIGTALGFVIAQSGLYGIRHSLGWLQREEFSTRIRTLPGHVIVAGFIRYAAPIGEQSGG
Ga0318575_105117392	3300032055	Soil	MSMTQLIISAALGFVIAQSALYGLRYSFAWLRREDVRTRIRAMTPSHGPAFFAGFIRYAAPIGASAALITLGVWAVGDYLSAKAA
Ga0318510_102611472	3300032064	Soil	MQLVIGTALGFVIAQSGLYGIRHSLGWLQREEFSTRIRTLPGHVIVAGFIRYAAPIGAVAALIALGVWALGDYMAAKAARSAALTNTLSRRQHRSGSAEQSGG
Ga0318524_100436634	3300032067	Soil	MSMTQLIIGTALGFVVAQSALYALRYSFGWLQREEVRTRIRALTPTPGHAFVAGFIRYAAPIGASAALITLAVWAVGDYLAAKAAPGAVL
Ga0318524_101747422	3300032067	Soil	MSMIQLVIGTALGFLAAQSGLYGIRRSFGWLQREEVRTRIGALPGHVIVGGFIRYAAPIGAVAALITLGVWAVGDYLAAKASRTVALATTLDSTTVAGV
Ga0306924_112169532	3300032076	Soil	MGMTQLIIGTALGFVVAQSALYGLRHSFGWLQREQVRTRIRAMTPSPGHAIVAGFIRYAAPIGASAALITLGV
Ga0318518_103576691	3300032090	Soil	MSMTQLIVSAALGFVIAQSALYGIRYSLAWLQREEVRTRIRAMTPSPGHAFVAGFIRYAAPIGA
Ga0318577_101765892	3300032091	Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARLRAMTPSPGHAVVAGFIRYAAPLGAAAALITLAVWGI
Ga0306920_1020344142	3300032261	Soil	MYTVPVMSMTQLIIGTALGFIVAQSGLYGIRHSLGWLQREQVRTRLRALTPLPGHAIVAGFIRYAAPIGATVALITLGVWAVGD
Ga0335076_112357622	3300032955	Soil	MSMAQLVIATALGFVVAQGMLYSVRQFAGWLQRDEVRTRIQALAPSPGRVIVAGFVRYAAPIGAGAALITLGVWAVSDYLAAKSAH
Ga0310914_102231634	3300033289	Soil	MSMTQLIIGTALGFVVAQSVLHGLRHSFGWLQREEVRTRIRAMTPSPGQAFVAGFIRYAAPIGASAA
Ga0318519_103451311	3300033290	Soil	MQTVSVMGMTQLIIGTALGFIVAQSALYAIRHSLGWLQRGEAGARLRAMTPSPGHAVVAGFIRYAAPLGA
Ga0314864_0171752_351_557	3300033805	Peatland	MSMAQLVIATALGFVVAQGVLYSARQFAGWLQRDEVRSRIHALAPSPGRVIVAGFVRYAAPIGAGAALI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089268

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences