Metagenome / Metatranscriptome Family F089206

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F089206
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	69 residues
Representative Sequence	MKLKAPEGVGDPCVAGVVIASRDGVYEVEAEIGALLIECFGFVEAGAERKPKAAPRRPRAAAKKTAAED
Number of Associated Samples	73
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	92.59 %
% of genes near scaffold ends (potentially truncated)	14.68 %
% of genes from short scaffolds (< 2000 bps)	63.30 %
Associated GOLD sequencing projects	66
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Bacteria (62.385 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil (12.844 % of family members)
Environment Ontology (ENVO)	Unclassified (27.523 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (55.963 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.34% β-sheet: 13.40% Coil/Unstructured: 75.26%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF09450	DUF2019	14.68
PF09994	DUF2235	5.50
PF04883	HK97-gp10_like	3.67
PF09343	DUF2460	1.83
PF05069	Phage_tail_S	1.83
PF02604	PhdYeFM_antitox	0.92
PF04255	DUF433	0.92
PF14464	Prok-JAB	0.92
PF00903	Glyoxalase	0.92
PF02541	Ppx-GppA	0.92
PF00872	Transposase_mut	0.92
PF11455	MazE-like	0.92
PF13673	Acetyltransf_10	0.92
PF09931	DUF2163	0.92
PF02452	PemK_toxin	0.92
PF00990	GGDEF	0.92
PF06689	zf-C4_ClpX	0.92
PF04355	SmpA_OmlA	0.92
PF01972	SDH_sah	0.92
PF14428	DddA-like	0.92
PF14430	Imm1	0.92
PF14412	AHH	0.92
PF00561	Abhydrolase_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0248	Exopolyphosphatase/pppGpp-phosphohydrolase	Signal transduction mechanisms [T]	1.83
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.83
COG5005	Mu-like prophage protein gpG	Mobilome: prophages, transposons [X]	1.83
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.92
COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	Defense mechanisms [V]	0.92
COG2442	Predicted antitoxin component of a toxin-antitoxin system, DUF433 family	Defense mechanisms [V]	0.92
COG2913	Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex	Cell wall/membrane/envelope biogenesis [M]	0.92
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.92
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.39 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.55 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	51.38 %
Unclassified	root	N/A	37.61 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	42.20 %
Unclassified	root	N/A	37.61 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.83 %
Caulobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales	0.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.50 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.83 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.92 %
Caulobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae	0.92 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.92 %
Methylocystaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1.83 %
Rhodopseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas	1.83 %
Caulobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter	0.92 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Methylocella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella	0.92 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
unclassified Azospirillum	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum	1.83 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.83 %
unclassified Caulobacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter	0.92 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.92 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.61 %
Azospirillum sp. B4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B4	1.83 %
Rhodopseudomonas palustris	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1.83 %
Caulobacter sp. CCUG 60055	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. CCUG 60055	0.92 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.92 %
Methylocella tundrae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	0.92 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.92 %
Methylosinus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	0.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	0.92 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005435\|Ga0070714_101943259	All Organisms → cellular organisms → Bacteria	574	Open in IMG/M
3300005529\|Ga0070741_10459320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1159	Open in IMG/M
3300005531\|Ga0070738_10113408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1409	Open in IMG/M
3300005533\|Ga0070734_10262523	Not Available	989	Open in IMG/M
3300005538\|Ga0070731_10003072	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	15257	Open in IMG/M
3300005591\|Ga0070761_10667651	Not Available	649	Open in IMG/M
3300005602\|Ga0070762_10007066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5507	Open in IMG/M
3300005602\|Ga0070762_10945006	Not Available	589	Open in IMG/M
3300005610\|Ga0070763_10049210	Not Available	1999	Open in IMG/M
3300005712\|Ga0070764_10927887	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	546	Open in IMG/M
3300005921\|Ga0070766_10005377	All Organisms → cellular organisms → Bacteria → Proteobacteria	6486	Open in IMG/M
3300005921\|Ga0070766_10081979	Not Available	1879	Open in IMG/M
3300005921\|Ga0070766_10185008	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1295	Open in IMG/M
3300006176\|Ga0070765_100158985	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2023	Open in IMG/M
3300006893\|Ga0073928_10035765	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4678	Open in IMG/M
3300006893\|Ga0073928_10480030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	895	Open in IMG/M
3300007982\|Ga0102924_1000276	All Organisms → cellular organisms → Bacteria → Proteobacteria	64434	Open in IMG/M
3300007982\|Ga0102924_1002152	All Organisms → cellular organisms → Bacteria → Proteobacteria	21816	Open in IMG/M
3300007982\|Ga0102924_1004462	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14107	Open in IMG/M
3300009521\|Ga0116222_1347132	Not Available	643	Open in IMG/M
3300009764\|Ga0116134_1271278	Not Available	584	Open in IMG/M
3300010343\|Ga0074044_10536932	Not Available	764	Open in IMG/M
3300010379\|Ga0136449_100303905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2906	Open in IMG/M
3300010379\|Ga0136449_101483485	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	1040	Open in IMG/M
3300010379\|Ga0136449_103937674	Not Available	556	Open in IMG/M
3300014151\|Ga0181539_1007622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7971	Open in IMG/M
3300014153\|Ga0181527_1006638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9259	Open in IMG/M
3300014164\|Ga0181532_10397781	All Organisms → cellular organisms → Bacteria → Proteobacteria	766	Open in IMG/M
3300014165\|Ga0181523_10052976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2514	Open in IMG/M
3300014201\|Ga0181537_11156720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	523	Open in IMG/M
3300014489\|Ga0182018_10010376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6706	Open in IMG/M
3300014501\|Ga0182024_10030174	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9335	Open in IMG/M
3300014501\|Ga0182024_10937197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1039	Open in IMG/M
3300014501\|Ga0182024_11056647	Not Available	963	Open in IMG/M
3300017925\|Ga0187856_1002105	All Organisms → cellular organisms → Bacteria → Proteobacteria	14985	Open in IMG/M
3300017925\|Ga0187856_1075508	Not Available	1393	Open in IMG/M
3300017970\|Ga0187783_10027207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4237	Open in IMG/M
3300017970\|Ga0187783_10872993	Not Available	649	Open in IMG/M
3300017970\|Ga0187783_11321221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	520	Open in IMG/M
3300017972\|Ga0187781_10108554	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	1930	Open in IMG/M
3300017975\|Ga0187782_10095623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2185	Open in IMG/M
3300017975\|Ga0187782_11100139	Not Available	620	Open in IMG/M
3300018017\|Ga0187872_10206514	Not Available	903	Open in IMG/M
3300018040\|Ga0187862_10872853	Not Available	517	Open in IMG/M
3300018044\|Ga0187890_10256907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B4	983	Open in IMG/M
3300018047\|Ga0187859_10926375	Not Available	502	Open in IMG/M
3300018057\|Ga0187858_10621181	Not Available	650	Open in IMG/M
3300018062\|Ga0187784_10001207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	20366	Open in IMG/M
3300018062\|Ga0187784_10034908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Rhodopseudomonas → Rhodopseudomonas palustris	4065	Open in IMG/M
3300018062\|Ga0187784_10597132	Not Available	887	Open in IMG/M
3300018062\|Ga0187784_10761739	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	773	Open in IMG/M
3300018088\|Ga0187771_10977242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	718	Open in IMG/M
3300018090\|Ga0187770_10739378	Not Available	786	Open in IMG/M
3300018090\|Ga0187770_10765084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → Methylocella → Methylocella tundrae	772	Open in IMG/M
3300018090\|Ga0187770_11517618	Not Available	546	Open in IMG/M
3300019888\|Ga0193751_1009698	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5123	Open in IMG/M
3300021171\|Ga0210405_11004658	Not Available	629	Open in IMG/M
3300021180\|Ga0210396_10005165	All Organisms → cellular organisms → Bacteria → Proteobacteria	12665	Open in IMG/M
3300021403\|Ga0210397_10788644	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	733	Open in IMG/M
3300021404\|Ga0210389_10073576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2620	Open in IMG/M
3300021407\|Ga0210383_10037403	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4050	Open in IMG/M
3300021420\|Ga0210394_10003493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19656	Open in IMG/M
3300021420\|Ga0210394_10742775	All Organisms → cellular organisms → Bacteria → Proteobacteria	859	Open in IMG/M
3300021474\|Ga0210390_10738054	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylocystaceae → Methylosinus	819	Open in IMG/M
3300021477\|Ga0210398_11074909	Not Available	640	Open in IMG/M
3300022557\|Ga0212123_10002339	All Organisms → cellular organisms → Bacteria → Proteobacteria	46257	Open in IMG/M
3300022557\|Ga0212123_10007493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	17327	Open in IMG/M
3300022557\|Ga0212123_10009534	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	14127	Open in IMG/M
3300022557\|Ga0212123_10657079	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	652	Open in IMG/M
3300025898\|Ga0207692_11195528	Not Available	505	Open in IMG/M
3300025929\|Ga0207664_10829098	Not Available	832	Open in IMG/M
3300027370\|Ga0209010_1035495	Not Available	852	Open in IMG/M
3300027567\|Ga0209115_1001618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4039	Open in IMG/M
3300027773\|Ga0209810_1021193	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4224	Open in IMG/M
3300027855\|Ga0209693_10154916	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1131	Open in IMG/M
3300027867\|Ga0209167_10788326	Not Available	517	Open in IMG/M
3300027869\|Ga0209579_10004585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	9610	Open in IMG/M
3300027884\|Ga0209275_10001141	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10795	Open in IMG/M
3300027889\|Ga0209380_10027063	Not Available	3235	Open in IMG/M
3300027889\|Ga0209380_10117756	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Caulobacterales → Caulobacteraceae → Caulobacter → unclassified Caulobacter → Caulobacter sp. CCUG 60055	1543	Open in IMG/M
3300027889\|Ga0209380_10802565	Not Available	533	Open in IMG/M
3300027908\|Ga0209006_10319962	Not Available	1320	Open in IMG/M
3300030763\|Ga0265763_1000673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2190	Open in IMG/M
3300030862\|Ga0265753_1056314	Not Available	711	Open in IMG/M
3300031234\|Ga0302325_12671711	Not Available	590	Open in IMG/M
3300031525\|Ga0302326_12255781	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → unclassified Azospirillum → Azospirillum sp. B4	693	Open in IMG/M
3300031670\|Ga0307374_10030957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6212	Open in IMG/M
3300031670\|Ga0307374_10054802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4051	Open in IMG/M
3300031708\|Ga0310686_105166015	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1695	Open in IMG/M
3300031708\|Ga0310686_105623486	Not Available	985	Open in IMG/M
3300031708\|Ga0310686_106537861	Not Available	771	Open in IMG/M
3300032160\|Ga0311301_10066086	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7764	Open in IMG/M
3300032160\|Ga0311301_11954502	All Organisms → cellular organisms → Bacteria	688	Open in IMG/M
3300032770\|Ga0335085_11519992	All Organisms → cellular organisms → Bacteria → Proteobacteria	697	Open in IMG/M
3300032783\|Ga0335079_12347628	Not Available	505	Open in IMG/M
3300032805\|Ga0335078_10140147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3435	Open in IMG/M
3300032805\|Ga0335078_10475930	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1613	Open in IMG/M
3300032805\|Ga0335078_10892150	Not Available	1069	Open in IMG/M
3300032805\|Ga0335078_11006722	Not Available	986	Open in IMG/M
3300032805\|Ga0335078_12625531	Not Available	516	Open in IMG/M
3300032805\|Ga0335078_12720132	All Organisms → cellular organisms → Bacteria → Proteobacteria	503	Open in IMG/M
3300032892\|Ga0335081_10177638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2989	Open in IMG/M
3300032896\|Ga0335075_10651248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1027	Open in IMG/M
3300032896\|Ga0335075_11031634	Not Available	734	Open in IMG/M
3300033134\|Ga0335073_10935607	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	907	Open in IMG/M
3300033134\|Ga0335073_11509256	Not Available	648	Open in IMG/M
3300033158\|Ga0335077_10875329	Not Available	908	Open in IMG/M
3300033402\|Ga0326728_10000503	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	152879	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.08%
Host-Associated	Host-Associated	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.90%
Aquatic	Environmental → Aquatic	20.18%
Plants	Host-Associated → Plants	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	76.15%
Freshwater	Environmental → Aquatic → Freshwater	11.93%
Thermal Springs	Environmental → Aquatic → Thermal Springs	8.26%
Peat	Environmental → Terrestrial → Peat	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Terrestrial → Soil → Wetlands	30.28%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.69%
Loam	Environmental → Terrestrial → Soil → Loam	18.35%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	11.93%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	8.26%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	2.75%
Clay	Environmental → Terrestrial → Soil → Clay	1.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	26.61%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	17.43%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.60%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	11.01%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	8.26%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.26%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	2.75%
Unclassified	Environmental → Terrestrial → Soil → Clay → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	12.84%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	12.84%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	12.84%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	8.26%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	6.42%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.42%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.50%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	5.50%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	4.59%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost	2.75%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Clay → Unclassified → Soil	1.83%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.92%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.92%
Palsa	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Palsa	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.92%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005529	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1	Environmental	Open in IMG/M
3300005531	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen12_06102014_R2	Environmental	Open in IMG/M
3300005533	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen06_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007982	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPM 11 metaG	Environmental	Open in IMG/M
3300009521	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG	Environmental	Open in IMG/M
3300009764	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_40	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014165	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014489	Permafrost microbial communities from Stordalen Mire, Sweden - 812P2M metaG	Environmental	Open in IMG/M
3300014501	Permafrost microbial communities from Stordalen Mire, Sweden - P3-2 metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018017	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_40	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300019888	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027567	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O2 (SPAdes)	Environmental	Open in IMG/M
3300027773	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen14_06102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027855	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300030763	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031670	Soil microbial communities from Risofladan, Vaasa, Finland - OX-3	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031712	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG	Host-Associated	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300033134	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070714_1019432592	3300005435	Agricultural Soil	MKLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAGTEPKAKAVPRRPRRPAKKIAAED*
Ga0070741_104593203	3300005529	Surface Soil	MKLKAPSGVGDPCVAGVSLAARDGLYEVEAEIGALLIECFAFVEADDASAAKGASGPAPSALRRRSRPPAV
Ga0070738_101134082	3300005531	Surface Soil	MKLKAPPGVGDPCVAGVVIIARDGIYDVDAETGALLLECFGFVEIAEHDKSAGARWARRRRRRWNRPTDIRS*
Ga0070734_102625233	3300005533	Surface Soil	MKLKAPPGVGDPCVAGVAVVPCDGVYEVEPEVGVLLIECFGFVALEADRKPAQARAVSRRKSPA
Ga0070731_100030728	3300005538	Surface Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAAIGALLIECFGFVEAGVEPKSKAARRRPRAAAKKTAAED*
Ga0070761_106676512	3300005591	Soil	MKLKAPEGVGDPCVAGVAIAPRDGVYEVEAMIGALLIECFGFVEAEAAAKPRPVGAPRRSRQAAEK
Ga0070762_100070668	3300005602	Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAEIGALLIECFGFVEADAEEKPKAAPRRPRKPAKKTAAED*
Ga0070762_109450062	3300005602	Soil	MKLKAPEGVGDPCVAGVAIAPRDGVYEVEAGIGALLIECFGFFEADAAAKPRPASAPRRGRLVAKKA*
Ga0070763_100492102	3300005610	Soil	MKLKAPEGVGDPCVAGVIIAPRGGVYEVEAEIGALLIECFGFVEAGAEQKPKAAPRRPRAAAKKTAAED*
Ga0070764_109278872	3300005712	Soil	MKLKAPEGVGEPCVAGVAIIARDGLYDVEPGIGALLIECFGFAEVEAPPPAKAASAPRRGRQPSKKA*
Ga0070766_100053779	3300005921	Soil	MKLKAPEGVGDPCVAGVIIAPRGGVYEVEAEIGALLIECFGFVEAGAEQKSKAAPRRPRAAAKKTAAED*
Ga0070766_100819792	3300005921	Soil	MKLKAPEGVGDPCVAGAVIAPREGVYEVEAAIGALLIECFGFIEAGAEQKPKAAPRRPRAAAKKTAAED*
Ga0070766_101850082	3300005921	Soil	MKLKAPEGVGEPCVAGVAIASRDGLYEVEAEIGALLIECFGFVEAASPTKPNATGASRRSRPAAKKL*
Ga0070765_1001589852	3300006176	Soil	MKLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAGAEQKSKAASAPRRPRAAAKKTAAED*
Ga0073928_100357656	3300006893	Iron-Sulfur Acid Spring	MKLKAPEGVGDPCVAGVVIAPRQGVYEVEAEIGALLIECFGFVDAGIEQKPKAAPRRPRPAAKKTAAEN*
Ga0073928_104800302	3300006893	Iron-Sulfur Acid Spring	MKLKAPQGVGDPCIAGATIAARDGLYEVETAIGTLLIECFGFIEVEAPEESSPASAPRRVRPAAKKA*
Ga0102924_100027669	3300007982	Iron-Sulfur Acid Spring	MKLKAPEGVGDPCVAGAVIAPRNGLYEVEAEIGALLIECFGFVEIEERGNATASGTFGAPSAPRRRPSAKKPPAEV*
Ga0102924_100215219	3300007982	Iron-Sulfur Acid Spring	MKLKAPPGVGEPCVAGVAILARDGLYEVEAEIGALLIECFGFAEVEAPAQPPAVRASAPRRARPAAKKS*
Ga0102924_10044624	3300007982	Iron-Sulfur Acid Spring	MKLKAPQGVGNPCVAGVMLGTRNGLYEVEAEIGALLVECFGFVEVEAPEKASTLSAPRRSKAPSKKT*
Ga0116222_13471322	3300009521	Peatlands Soil	MKLKAPEGVGDPCVAGVVIASRDGVYEVEAEIGALLIECFGFVEAGAERKPKAAPRRPRAAAKKTAAED*
Ga0116134_12712781	3300009764	Peatland	MKLKAPEGVGDPCVAGVAIASRDGVYEVEPEIGALLIECFGFVEVAAAEKPNVANAARRGRPAAKKA*
Ga0074044_105369322	3300010343	Bog Forest Soil	MKLKAPEGVGNPCVAGVVIAPRNGLYEVEAEIGALLIECFGFVEVEAPAKPGVAGAPRRNRPAAKMA*
Ga0136449_1003039053	3300010379	Peatlands Soil	MKLKAPEGVGDPCVAGVVIAPRDGLYEVEAEIGALLIECFGFVEVETPQKPNAAPTPRRGRPSAKKA*
Ga0136449_1014834852	3300010379	Peatlands Soil	MKLKAPEGVGDPCVAGVAITPRDGIYEVEADIGALLIECFGFVALEAGAAEKPKAPLAPRRGKPASAKPTLKKV*
Ga0136449_1039376742	3300010379	Peatlands Soil	MKLKAPQGVGDPCVAGVIIAPHDGVYEVEPEIGALLIECFGFVAVEAGAAEKVKLGPAARRGKPAARKA*
Ga0181539_10076224	3300014151	Bog	MKLKAPEGVGDPCVAGVAIVPRDGLYEVEAEIGLHSIECFGFVEVETLAKPIAAGAPRRGRRGRRAGAVTKL*
Ga0181527_10066389	3300014153	Bog	MKLKAPEGVGDPCVAGVAIVPRDGLYEVEAEIGLHLIECFGFVEVETLAKPIAAGAPRRGRRGRRAGAVTKL*
Ga0181532_103977811	3300014164	Bog	MKLKAPEGVGAPCVAGVAIVARDGLYEVEAEIGALLIECFGFAEVEAPAKPRAASASAPRRARPA
Ga0181523_100529764	3300014165	Bog	MKLKAPEGVGAPCVAGVAIVARDGLYEVEAEIGALLIECFGFAEVEAPAKPRAASASAPRRARPAAKKS*
Ga0181537_111567202	3300014201	Bog	MKLKAPQGVGDPCVAGVVIAASDGVYDVEAEVGALLVECFGFVEAETDTGAAETAKATPAARRARSSVKKS*
Ga0182018_100103768	3300014489	Palsa	MKLKAPEGVGDPCVAGVVVAARDGVYEVEAEIGALLIEAFGFVEAETPEKPSAAPVPMSAPRRRVAAKKS*
Ga0182024_100301743	3300014501	Permafrost	MKLKAPKGVGEPCVAGVAIAARDGLYEVEADVAALLIECFGFIEVATSVKPRAAPASRRLPAAKQP*
Ga0182024_109371973	3300014501	Permafrost	MKLRAPEGVGDPCVAGVAIAPRNGIYEVEADVGTLLIECFGFVALETSAADEPKVPLAARRGKPASARTPPKKI*
Ga0182024_110566471	3300014501	Permafrost	LRAPDGVGDPCVAGVAIVPRDGVYEVEPQVGALLIECFSFVEVETAAKLGGSAGAIRRGKIPSKRASRES*
Ga0187856_10021057	3300017925	Peatland	MKLKAPQGVGNPCVAGVTVQPRDGVYEVEPEIGALLIECFGFVEVEAGATEKVKAAPAARRGKPARKA
Ga0187856_10755083	3300017925	Peatland	MKLKAPEGVGNPCVAGVAIARRNGVYDVEPAIGALLIECFGFVEIEAPEKPNAASAPRRARQAPKKA
Ga0187783_100272072	3300017970	Tropical Peatland	MKLKAPQGVGDPCVAGVAIKARDGVYDVGDDIGALLIECFGFIGVVSQDNANLALRRALPPARRARPALRSPRRVKPAS
Ga0187783_108729931	3300017970	Tropical Peatland	MKLKAPQGVGDPCVAGVTVTARGGIYEVEAEIGALLIESFGFIAVEADAGETPKASPRRARPATRKS
Ga0187783_113212211	3300017970	Tropical Peatland	MKLKAPKGVGDPCVAGVAIGPRNGVYEVEPEIGALLIECFGFVEIAETVKASAPLATRRAKPSAKKA
Ga0187781_101085541	3300017972	Tropical Peatland	MKLTAPPGVGDPCVAGVTIESRDGVYEVEPEIGALLIECFGFVAVPPAPVEAGAAEKRRGAAAVRRAKPASRKA
Ga0187782_100956232	3300017975	Tropical Peatland	MKLKAPQGAGDPCVAGVVIAACDGVYEVEPEIGALLIESFGFSIVADEKEDAAPGPAKRTAAATPAPRRGQATVKNAR
Ga0187782_111001391	3300017975	Tropical Peatland	MKLKAPQGVGDPCVAGVAISSRDGVYEVEAEIGALLIECFGFVVVEEGAAEKAKAAPAARRAKPAPRKA
Ga0187872_102065142	3300018017	Peatland	MKLKAPEGVGDPCVAGVAIASRDGVYEVEPEIGALLIECFGFVEVAAAEKPNVANAARRGRPAAKKA
Ga0187862_108728531	3300018040	Peatland	MKLKAPEGVGDPCVAGVAIASRDGVYEVEPEIGALLIECFGFVEVAAAEKPNVANAARRGRPAAK
Ga0187890_102569072	3300018044	Peatland	MKLKAPEGVGDPCVDGVTVEPRDGVYEVEAEVGALLIECFGFMEVAAVETGKVAGAARRGKAAARKARAEG
Ga0187859_109263751	3300018047	Peatland	LRTFMKLKAPPGVGDPCVAGVEIVSSGESYEVEAEIGALLIECFGFMEVAAVETRKIAGTARRGKPAARKARAEG
Ga0187858_106211812	3300018057	Peatland	MKLKAPQGVGNPCVAGVTVQPRDGVYEVEPEIGALLIECFGCVEVEAGATEKVKAAPAARRGKPARKA
Ga0187784_1000120720	3300018062	Tropical Peatland	MKLKAPQGAGDPCVAGVTIVPRDGVYEVEPEIGVHLIECFGFVEFIEAETAAPARAESAPRRRKPAARKV
Ga0187784_100349083	3300018062	Tropical Peatland	MKLTAPPGVGDPCVAGVTIESRDGVYEVEPEIGALLIECFGFVAVPPAPVEAGAEEKRRGAAAVRRAKPASRKA
Ga0187784_105971322	3300018062	Tropical Peatland	MKLKAPQGAGDPCVAGVVIAACDGVYEVEAEIGALLIESFGFIIVADEKEDAAPGPAKRTAAATPAPRRGQAAVKNAR
Ga0187784_107617392	3300018062	Tropical Peatland	MKLKAPSGVGDPCVAGVVINARDGVYEVEPEAAALLIECFGFVAVDEDASEKQKAVPAARRRKPTARPS
Ga0187771_109772422	3300018088	Tropical Peatland	VGDPCVAGVVIAARAGVYEVEAAVGALLIECFGFVEVAAEAPRKEAPAPRRGRQVRKAPG
Ga0187770_107393782	3300018090	Tropical Peatland	MKLKAPQGAGDPCVAGVVIAACDSVYEVEPEIAALLIESFGFTAVADEKEDAAPGPAKRTAAATPAQRRNRAPTKDPR
Ga0187770_107650841	3300018090	Tropical Peatland	MKLKAPKGVGDPCVAGVAIASRDGVYDVDAEVGALLMECFGFVVIEEAAAVSAPRRGKQPVKK
Ga0187770_115176182	3300018090	Tropical Peatland	MKLKAPEGVGDPCVAGTVIAARDGVYDVDAEVGALLMECFGFVGIGEAAPQEAAAVSAPRRGKQPVKKA
Ga0193751_10096988	3300019888	Soil	MKLKAPEGVGDPCIAGVVIAPRAGVYEVEAEIGALLIECFGFVEAGAEQKAKAAPRRLRAAAKKTAAED
Ga0210405_110046582	3300021171	Soil	MKLKAPEGVGDPCVAGAVIASRDGVYEVEAEIGALLIECFGFVEAGAEQKSKTAPRRPRAAAKKTAAED
Ga0210396_100051657	3300021180	Soil	MKLKAPEGVGDPCVAGVVITSRDSVYEVEAEIGALLIECFGFVEAGAEQKAKAAPRRPRAAAKKTAAED
Ga0210397_107886441	3300021403	Soil	MRLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAGAEQKSKAAPRRPRAAAKKTAAED
Ga0210389_100735761	3300021404	Soil	QSMNLKAPEGVGDPCVAGVVIAPRDGVYEVEAEIGALLIECFGFVEADAEQKPKAVPRRPRKPAKKTAAED
Ga0210383_100374032	3300021407	Soil	MKLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAGAEQKSKAASAPRRPRAAAKKTAAED
Ga0210394_1000349314	3300021420	Soil	MKLKAPPGVGDPCVAGVAIAPRDGLYEVEVEIGALLIECFGFVEAEAPAKPRVASASALRRAQPAAKKS
Ga0210394_107427752	3300021420	Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAEIGAVLIECFGFVEVEAPATPAPARAARRARPSAKTI
Ga0210390_107380542	3300021474	Soil	MKLKAPEGVGDPCVAGVVITSRDSVYEVEAEIGALLVECFGFVEAGAEQKAKAAPRRPRAVAKKTAAED
Ga0210398_110749092	3300021477	Soil	MKLKAPEGVGDPCVAGVAIAPREGVYEVEAEIGALLIECFGFVEAGAEQRFKVAPRRPRAAAKKTAAED
Ga0212123_100023398	3300022557	Iron-Sulfur Acid Spring	MKLKAPEGVGDPCVAGAVIAPRNGLYEVEAEIGALLIECFGFVEIEERGNATASGTFGAPSAPRRRPSAKKPPAEV
Ga0212123_1000749315	3300022557	Iron-Sulfur Acid Spring	MKLKAPPGVGEPCVAGVAILARDGLYEVEAEIGALLIECFGFAEVEAPAQPPAVRASAPRRARPAAKKS
Ga0212123_100095344	3300022557	Iron-Sulfur Acid Spring	MKLKAPQGVGNPCVAGVMLGTRNGLYEVEAEIGALLVECFGFVEVEAPEKASTLSAPRRSKAPSKKT
Ga0212123_106570791	3300022557	Iron-Sulfur Acid Spring	MKLKAPQGVGDPCIAGATIAARDGLYEVETAIGTLLIECFGFIEVEAPEESSPASAPRRVRPAAKKA
Ga0207692_111955282	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	MKLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAGTEPKAKAVPRRPRRPA
Ga0207664_108290982	3300025929	Agricultural Soil	MKLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAGTEPKAKAVPRRPRRPAKKIAAED
Ga0209010_10354952	3300027370	Forest Soil	MKLKAPEGVGDPCVAGVVIVPCEGVYEVEAEIGALLIECFGFVEAGTEQKPKSAPRRPRAAAKKTAAED
Ga0209115_10016188	3300027567	Forest Soil	MKLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAGAEQKPKITPRRPRAAAKKSAAED
Ga0209810_10211934	3300027773	Surface Soil	MKLKAPPGVGDPCVAGVVIIARDGIYDVDAETGALLLECFGFVEIAEHDKSAGARWARRRRRRWNRPTDIRS
Ga0209693_101549161	3300027855	Soil	MKLKAPEGVGDPCVAGVIIAPRGGVYEVEAEIGALLIECFGFVEAGAEQKPKAAPRRPRAAAKKTAAED
Ga0209167_107883261	3300027867	Surface Soil	CPNQPGHPTRHKMKLKAPEGVGEPCVAGVVIAPRDGVYEVDAAIGALLIECFGFVEADAATRLRPAGAARRSRPAPKKV
Ga0209579_1000458514	3300027869	Surface Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAAIGALLIECFGFVEAGVEPKSKAARRRPRAAAKKTAAED
Ga0209275_100011415	3300027884	Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAEIGALLIECFGFVEADAEEKPKAAPRRPRKPAKKTAAED
Ga0209380_100270634	3300027889	Soil	MKLKAPEGVGDPCVAGVIIAPRGGVYEVEAEIGALLIECFGFVEAGAEQKSKAAPRRPRAAAKKTAAED
Ga0209380_101177562	3300027889	Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAEIGALLIECFGFVEAGAEQKSKAEPRRPRRPAKKTAAED
Ga0209380_108025652	3300027889	Soil	MKLKAPEGVGEPCVAGVAIASRDGLYEVEAEIGALLIECFGFVEAASPTKPNATGASRRSRPAAKKL
Ga0209006_103199622	3300027908	Forest Soil	MKLKAPESVGDPCVAGVVIASREGVYEVEAEIGALLIECFGFVEAGAEQKAKAAPRRPRAAAKKTAAED
Ga0265763_10006732	3300030763	Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAEIGALLIECFGFVEAGAERKPNAAPRRPRVATKKTAAED
Ga0265753_10563142	3300030862	Soil	MKLKAPEGVGDPCVAGVVIAPRDGVYEVEAEIGALLIECFGFVEAGAERKPNAAPRRPRAAAKKTAAED
Ga0302325_126717111	3300031234	Palsa	MKLKAPEGVGDPCVAGAVVAARNGIYEVEAEIGALLIECFGFVEVETAAKPGATPAPRRRSQTKKT
Ga0302326_122557812	3300031525	Palsa	MKLKAPRGVGDPCVAGVAIAPCDGVYEVEAEIGALLMECFGFVELELAAPEALKGTPAVRRSKAAARKA
Ga0307374_100309572	3300031670	Soil	MKLKAPQGVGDPCVAGATVTSRDGVYEVEAAIGTLLIECFGFVAIEGEALPKARAAPATRRAKSAASKS
Ga0307374_100548024	3300031670	Soil	MKLKAPQGVGDPCVAGATVTSRDGVYEVEAAIGTLLIESFGFVAVEDVAAGTERIKAVPAAAPAMRRARPAARKS
Ga0310686_1051660152	3300031708	Soil	MKLKAPEGVGEPCVAGVAIAARDGLYEVEAEIGALLIECFGFAEVEAPAQPSAARAVAPRRPRPAAKKT
Ga0310686_1056234862	3300031708	Soil	MKLKAPQGVGDPCVAGVTVESRDGVYEVEPEIGALLIECFGFVEAEAGAASQVKLPPARRSKPAARKA
Ga0310686_1065378612	3300031708	Soil	MKLKAPEGVGDPCVAGVVIVPRDGVYEVEAEIGALLIECFGFVEAGAERKTKAAPRRPRAAAKKTAAED
Ga0265342_101243471	3300031712	Rhizosphere	MKLKAPPGAGDPCVAGVTLAPRDGLYDVEAEIGALLIGCFGFVEFVASAPAKSAPAAAAL
Ga0311301_100660869	3300032160	Peatlands Soil	MKLKAPEGVGDPCVAGVVIASRDGVYEVEAEIGALLIECFGFVEAGAERKPKAAPRRPRAAAKKTAAED
Ga0311301_119545022	3300032160	Peatlands Soil	MKLKAPQGVGDPCVAGATIASRDGVYEVEPEVGALLIECFGFVEVEAGGADKAKAAPAARRGKPTARKA
Ga0335085_115199921	3300032770	Soil	MKLKAPQGVGDPCVAGVTVGSRDGVYEVDPEIGALLIECFGFVEVEAGAGLQVKLPPARRSKPAARKARAEN
Ga0335079_123476281	3300032783	Soil	MKLKAPEGVGDPCVAGVLIAPRNGVYEVEPDVGALLIACFGFFEVEAAEKPLPANARRGRGPAKKPAAEA
Ga0335078_101401473	3300032805	Soil	MKLKAPEGVGDPCIAGIAITSRKGLYEVEPEIGALLIESFGFVEVAAEEKRAAAPSARRGKAASRKG
Ga0335078_104759302	3300032805	Soil	MKLKAPPGVGDPSVAGANIAPHDGVYEVAPEIGALLIECFGFVAVDAAIAEKSKVAAAARRGKPAARKA
Ga0335078_108921501	3300032805	Soil	MKLKAPEGVGAPCVAGVAIVARDGLYEVEAEIGALLIEAFGFVEAAAAQRLKLPTMPAPAPRRARPAAKKA
Ga0335078_110067222	3300032805	Soil	EGVGDPCVAGVLIAPRNGVYEVEPDVGALLIAWFGFFEVEAAEKPLPANARRGRGPAKKPAAEA
Ga0335078_126255311	3300032805	Soil	MKLKAPEGVGDPCVAGVVIAPREGVYEVEAEIGALLIECFGFVEAVAEQKSKAAPRRPRAAAKKTAAED
Ga0335078_127201321	3300032805	Soil	MKLKAPEGVGDPCVAGVLIAPRNGVYEVEPDVGALLIACFGFFEVEAAEKPLPANARRGRGPA
Ga0335081_101776381	3300032892	Soil	MKLKAPEGVGDPCIAGIAITSRKGLYEVEPEIGALLIESFGFVEVAAEEKRAAAPSARRGRAASRKG
Ga0335075_106512482	3300032896	Soil	MKLTAPPGVGDPCVAGVTLPSRDSVYEVDADIGALLMECFGFVEVEAIPATSKPKSRAAPQRAKPAREA
Ga0335075_110316342	3300032896	Soil	MKLKAPQGVGDPCVAGVAVVPRDGVYEVEPEIGALLIECFGFVEVVAAEKPRAAAAARRGKPVPRKI
Ga0335073_109356071	3300033134	Soil	PMKLKAPPGVGDPCVAGVALAARDGLYEVEAEIGALLIECFGFVEAATADKTARSSSVPPRRRAPAKKTPAEK
Ga0335073_115092561	3300033134	Soil	MKLKAPQGVGDPCVAGTTIAPRDGVYEVEAEIGALLIECFGFVAVEAVAAGKIKTAAPPRRAKPAARKG
Ga0335077_108753292	3300033158	Soil	MKLKAPEGVGDPCVAGVVIAPRQGVYEVEAEIGALLIECFGFVAIEADATGKVKRASAARRAKSAAGKA
Ga0326728_1000050315	3300033402	Peat Soil	MKLKAPEGVGDPCVDGVTVAPRDGVYEVEAEVGALLIECFGFMEVAAVETRKVAGTARRGKAAARKARAEG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089206

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences