Metagenome / Metatranscriptome Family F089164

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089164
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	109 residues
Representative Sequence	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGR
Number of Associated Samples	95
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	61.11 %
% of genes near scaffold ends (potentially truncated)	47.71 %
% of genes from short scaffolds (< 2000 bps)	92.66 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.86

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (73.394 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.431 % of family members)
Environment Ontology (ENVO)	Unclassified (33.945 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (44.037 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.58% β-sheet: 23.88% Coil/Unstructured: 42.54%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.86
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.86
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.58.4.0: automated matches	d2bbea_	2bbe	0.71596
d.58.4.11: PA3566-like	d1y0ha_	1y0h	0.71465
d.58.4.0: automated matches	d3qmqa1	3qmq	0.69314
d.58.4.3: Actinorhodin biosynthesis monooxygenase ActVa-Orf6	d1lq9a_	1lq9	0.69269
d.58.4.0: automated matches	d4dpoa1	4dpo	0.68621

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF03976	PPK2	25.69
PF02954	HTH_8	23.85
PF03992	ABM	9.17
PF11737	DUF3300	6.42
PF01988	VIT1	0.92
PF01977	UbiD	0.92
PF00158	Sigma54_activat	0.92
PF13177	DNA_pol3_delta2	0.92
PF00474	SSF	0.92
PF03783	CsgG	0.92
PF00119	ATP-synt_A	0.92
PF00069	Pkinase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	25.69
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.67
COG0043	3-polyprenyl-4-hydroxybenzoate decarboxylase	Coenzyme transport and metabolism [H]	0.92
COG0356	FoF1-type ATP synthase, membrane subunit a	Energy production and conversion [C]	0.92
COG1462	Curli biogenesis system outer membrane secretion channel CsgG	Cell wall/membrane/envelope biogenesis [M]	0.92
COG1633	Rubrerythrin, includes spore coat protein YhjR	Inorganic ion transport and metabolism [P]	0.92
COG1814	Predicted Fe2+/Mn2+ transporter, VIT1/CCC1 family	Inorganic ion transport and metabolism [P]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	74.31 %
Unclassified	root	N/A	25.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	74.31 %
Unclassified	root	N/A	25.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	73.39 %
Unclassified	root	N/A	25.69 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.92 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	25.69 %
Unclassified	root	N/A	25.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	16.51 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	12.84 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.92 %
environmental samples	no rank	All Organisms → cellular organisms → Archaea → environmental samples	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
unclassified Nitrospirae	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae	12.84 %
Vicinamibacteria	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria	6.42 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6.42 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.83 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	0.92 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.92 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	12.84 %
Vicinamibacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales	6.42 %
Methylococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	4.59 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.92 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	0.92 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	12.84 %
Vicinamibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae	6.42 %
Methylothermaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylothermaceae	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.92 %
Methylococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae	0.92 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	12.84 %
Luteitalea	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea	6.42 %
Methylohalobius	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylothermaceae → Methylohalobius	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Achromobacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter	0.92 %
Methylosarcina	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina	0.92 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	12.84 %
unclassified Luteitalea	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea	5.50 %
Methylohalobius crimeensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylothermaceae → Methylohalobius → Methylohalobius crimeensis	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.92 %
Achromobacter agilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter agilis	0.92 %
Methylosarcina fibrata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina → Methylosarcina fibrata	0.92 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	25.69 %
Nitrospirae bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	12.84 %
Luteitalea sp. TBR-22	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	5.50 %
Methylohalobius crimeensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylothermaceae → Methylohalobius → Methylohalobius crimeensis	1.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.83 %
Luteitalea pratensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	0.92 %
Achromobacter agilis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter agilis	0.92 %
Methylosarcina fibrata	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina → Methylosarcina fibrata	0.92 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	0.92 %
uncultured archaeon	species	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100378023	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	808	Open in IMG/M
3300000881\|JGI10215J12807_1511568	All Organisms → cellular organisms → Bacteria → Acidobacteria	1505	Open in IMG/M
3300000956\|JGI10216J12902_103815469	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	768	Open in IMG/M
3300000956\|JGI10216J12902_107415436	Not Available	891	Open in IMG/M
3300001431\|F14TB_111810194	Not Available	532	Open in IMG/M
3300001686\|C688J18823_10107299	All Organisms → cellular organisms → Bacteria → Proteobacteria	1940	Open in IMG/M
3300002568\|C688J35102_118973964	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylococcaceae → Methylosarcina → Methylosarcina fibrata	620	Open in IMG/M
3300002568\|C688J35102_119171114	All Organisms → cellular organisms → Bacteria	649	Open in IMG/M
3300003993\|Ga0055468_10021493	All Organisms → cellular organisms → Bacteria	1418	Open in IMG/M
3300004114\|Ga0062593_102092276	All Organisms → cellular organisms → Bacteria → Acidobacteria	631	Open in IMG/M
3300004153\|Ga0063455_100044644	All Organisms → cellular organisms → Bacteria → Proteobacteria	1466	Open in IMG/M
3300004156\|Ga0062589_101098556	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	752	Open in IMG/M
3300004156\|Ga0062589_101611749	All Organisms → cellular organisms → Bacteria	643	Open in IMG/M
3300004157\|Ga0062590_103030576	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylothermaceae → Methylohalobius → Methylohalobius crimeensis	503	Open in IMG/M
3300004800\|Ga0058861_11354894	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	634	Open in IMG/M
3300005293\|Ga0065715_10625682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	693	Open in IMG/M
3300005335\|Ga0070666_11208849	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales → Methylothermaceae → Methylohalobius → Methylohalobius crimeensis	563	Open in IMG/M
3300005347\|Ga0070668_101159855	Not Available	699	Open in IMG/M
3300005355\|Ga0070671_101467872	Not Available	603	Open in IMG/M
3300005356\|Ga0070674_100190434	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1578	Open in IMG/M
3300005439\|Ga0070711_100086072	All Organisms → cellular organisms → Bacteria	2253	Open in IMG/M
3300005455\|Ga0070663_100397636	All Organisms → cellular organisms → Bacteria → Proteobacteria	1126	Open in IMG/M
3300005458\|Ga0070681_11262774	All Organisms → cellular organisms → Bacteria → Acidobacteria	661	Open in IMG/M
3300005466\|Ga0070685_10847054	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300005548\|Ga0070665_100346392	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300005719\|Ga0068861_102005820	Not Available	577	Open in IMG/M
3300006038\|Ga0075365_10835143	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	650	Open in IMG/M
3300006048\|Ga0075363_100820958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	566	Open in IMG/M
3300006186\|Ga0075369_10545726	All Organisms → cellular organisms → Bacteria → Proteobacteria	553	Open in IMG/M
3300006195\|Ga0075366_10637051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Methylococcales	661	Open in IMG/M
3300006358\|Ga0068871_102002456	All Organisms → cellular organisms → Bacteria → Proteobacteria	551	Open in IMG/M
3300006755\|Ga0079222_11624153	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300006894\|Ga0079215_10582767	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300007004\|Ga0079218_10491832	All Organisms → cellular organisms → Bacteria	1081	Open in IMG/M
3300007004\|Ga0079218_12842379	All Organisms → cellular organisms → Bacteria → Proteobacteria	581	Open in IMG/M
3300009094\|Ga0111539_10292759	All Organisms → cellular organisms → Bacteria	1894	Open in IMG/M
3300009147\|Ga0114129_10031681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	7474	Open in IMG/M
3300009156\|Ga0111538_10140563	All Organisms → cellular organisms → Bacteria	3068	Open in IMG/M
3300009553\|Ga0105249_10175370	All Organisms → cellular organisms → Bacteria → Acidobacteria	2082	Open in IMG/M
3300010397\|Ga0134124_12969161	Not Available	518	Open in IMG/M
3300010398\|Ga0126383_11786901	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	703	Open in IMG/M
3300011333\|Ga0127502_10055646	Not Available	1054	Open in IMG/M
3300011333\|Ga0127502_10482687	Not Available	752	Open in IMG/M
3300011440\|Ga0137433_1252143	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	576	Open in IMG/M
3300012022\|Ga0120191_10041358	All Organisms → cellular organisms → Bacteria	766	Open in IMG/M
3300012212\|Ga0150985_110939270	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1019	Open in IMG/M
3300012212\|Ga0150985_111985473	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1449	Open in IMG/M
3300012212\|Ga0150985_121475042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	786	Open in IMG/M
3300012899\|Ga0157299_10006952	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1803	Open in IMG/M
3300012960\|Ga0164301_10120189	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300012987\|Ga0164307_10443612	Not Available	967	Open in IMG/M
3300013296\|Ga0157374_10894230	All Organisms → cellular organisms → Bacteria → Acidobacteria	905	Open in IMG/M
3300013308\|Ga0157375_10318073	Not Available	1721	Open in IMG/M
3300014267\|Ga0075313_1050323	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	977	Open in IMG/M
3300014968\|Ga0157379_10409781	All Organisms → cellular organisms → Bacteria → Acidobacteria	1247	Open in IMG/M
3300014968\|Ga0157379_12208750	Not Available	547	Open in IMG/M
3300015077\|Ga0173483_10926874	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300015258\|Ga0180093_1042410	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300015371\|Ga0132258_11871283	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1511	Open in IMG/M
3300015371\|Ga0132258_12002232	All Organisms → cellular organisms → Bacteria	1457	Open in IMG/M
3300015372\|Ga0132256_100825099	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1043	Open in IMG/M
3300015373\|Ga0132257_103886255	All Organisms → cellular organisms → Bacteria → Acidobacteria	544	Open in IMG/M
3300015374\|Ga0132255_105238222	Not Available	549	Open in IMG/M
3300017792\|Ga0163161_11254546	Not Available	643	Open in IMG/M
3300017965\|Ga0190266_10081835	All Organisms → cellular organisms → Bacteria → Acidobacteria	1266	Open in IMG/M
3300018083\|Ga0184628_10389120	Not Available	729	Open in IMG/M
3300018466\|Ga0190268_10450067	Not Available	852	Open in IMG/M
3300018466\|Ga0190268_10866109	Not Available	696	Open in IMG/M
3300018469\|Ga0190270_11387282	All Organisms → cellular organisms → Bacteria → Acidobacteria	748	Open in IMG/M
3300018476\|Ga0190274_10176523	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → Luteitalea pratensis	1844	Open in IMG/M
3300018481\|Ga0190271_12842318	Not Available	581	Open in IMG/M
3300019361\|Ga0173482_10140380	All Organisms → cellular organisms → Bacteria → Acidobacteria	929	Open in IMG/M
3300021082\|Ga0210380_10447663	Not Available	592	Open in IMG/M
3300022883\|Ga0247786_1105674	All Organisms → cellular organisms → Bacteria → Acidobacteria	611	Open in IMG/M
3300022886\|Ga0247746_1052854	All Organisms → cellular organisms → Bacteria → Acidobacteria	938	Open in IMG/M
3300023057\|Ga0247797_1044891	Not Available	626	Open in IMG/M
3300025315\|Ga0207697_10499494	Not Available	537	Open in IMG/M
3300025903\|Ga0207680_10446927	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300025908\|Ga0207643_10538763	All Organisms → cellular organisms → Bacteria	748	Open in IMG/M
3300025926\|Ga0207659_10292810	Not Available	1334	Open in IMG/M
3300025961\|Ga0207712_10115184	All Organisms → cellular organisms → Archaea → environmental samples → uncultured archaeon	2023	Open in IMG/M
3300025972\|Ga0207668_10946190	Not Available	768	Open in IMG/M
3300025981\|Ga0207640_11259540	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300027866\|Ga0209813_10252207	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	671	Open in IMG/M
3300027886\|Ga0209486_10818423	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	611	Open in IMG/M
3300027886\|Ga0209486_11062725	Not Available	547	Open in IMG/M
3300028587\|Ga0247828_10291835	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300028589\|Ga0247818_11262120	Not Available	529	Open in IMG/M
3300028592\|Ga0247822_10149467	Not Available	1719	Open in IMG/M
3300028802\|Ga0307503_10358756	All Organisms → cellular organisms → Bacteria → Acidobacteria	750	Open in IMG/M
3300028812\|Ga0247825_10571266	All Organisms → cellular organisms → Bacteria → Acidobacteria	809	Open in IMG/M
3300030590\|Ga0247643_1191892	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300030988\|Ga0308183_1195786	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	523	Open in IMG/M
3300031099\|Ga0308181_1168430	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	524	Open in IMG/M
3300031366\|Ga0307506_10529617	Not Available	504	Open in IMG/M
3300031548\|Ga0307408_101095982	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	738	Open in IMG/M
3300031716\|Ga0310813_10347012	All Organisms → cellular organisms → Bacteria → Acidobacteria	1264	Open in IMG/M
3300031901\|Ga0307406_11284816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	638	Open in IMG/M
3300031938\|Ga0308175_100010365	All Organisms → cellular organisms → Bacteria	6971	Open in IMG/M
3300031995\|Ga0307409_100882105	All Organisms → cellular organisms → Bacteria → Acidobacteria → Vicinamibacteria → Vicinamibacterales → Vicinamibacteraceae → Luteitalea → unclassified Luteitalea → Luteitalea sp. TBR-22	907	Open in IMG/M
3300031996\|Ga0308176_10006616	All Organisms → cellular organisms → Bacteria	7794	Open in IMG/M
3300032003\|Ga0310897_10066562	All Organisms → cellular organisms → Bacteria → Acidobacteria	1348	Open in IMG/M
3300032075\|Ga0310890_10417189	All Organisms → cellular organisms → Bacteria → Nitrospirae → unclassified Nitrospirae → Nitrospirae bacterium	1001	Open in IMG/M
3300032075\|Ga0310890_11055229	All Organisms → cellular organisms → Bacteria → Acidobacteria	656	Open in IMG/M
3300032075\|Ga0310890_11137038	All Organisms → cellular organisms → Bacteria → Acidobacteria	633	Open in IMG/M
3300032144\|Ga0315910_10736778	All Organisms → cellular organisms → Bacteria → Acidobacteria	766	Open in IMG/M
3300032157\|Ga0315912_10181021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Achromobacter → Achromobacter agilis	1653	Open in IMG/M
3300033412\|Ga0310810_10582986	Not Available	1081	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	61.47%
Host-Associated	Host-Associated	38.53%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	55.05%
Plants	Host-Associated → Plants	37.61%
Aquatic	Environmental → Aquatic	6.42%
Human	Host-Associated → Human	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	55.05%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.18%
Rhizoplane	Host-Associated → Plants → Rhizoplane	11.93%
Roots	Host-Associated → Plants → Roots	5.50%
Freshwater	Environmental → Aquatic → Freshwater	2.75%
Sediment	Environmental → Aquatic → Sediment	2.75%
Marine	Environmental → Aquatic → Marine	0.92%
Digestive System	Host-Associated → Human → Digestive System	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.87%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	11.01%
Soil	Host-Associated → Plants → Rhizosphere → Soil	9.17%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	7.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.59%
Bulk Soil	Host-Associated → Plants → Roots → Bulk Soil	4.59%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.75%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	1.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.92%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.92%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.92%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.18%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	11.01%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	9.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	7.34%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.59%
Unclassified	Host-Associated → Plants → Roots → Bulk Soil → Unclassified	4.59%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.92%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.92%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.43%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	5.50%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	5.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	5.50%
Populus Endosphere	Host-Associated → Plants → Roots → Bulk Soil → Unclassified → Populus Endosphere	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	2.75%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.75%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.75%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	1.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.92%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.92%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.92%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001431	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU F1.4TB clc assemly	Environmental	Open in IMG/M
3300001686	Grasslands soil microbial communities from Hopland, California, USA	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003993	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004800	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005293	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1	Host-Associated	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005355	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG	Host-Associated	Open in IMG/M
3300005356	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG	Host-Associated	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005455	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG	Host-Associated	Open in IMG/M
3300005458	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006038	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5	Host-Associated	Open in IMG/M
3300006048	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3	Host-Associated	Open in IMG/M
3300006186	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4	Host-Associated	Open in IMG/M
3300006195	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011440	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT840_2	Environmental	Open in IMG/M
3300012022	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - C6	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012899	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S058-202B-2	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014267	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D1	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015258	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT45_16_1Da	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300021082	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_coex redo	Environmental	Open in IMG/M
3300022883	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S066-202C-4	Environmental	Open in IMG/M
3300022886	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S079-202R-5	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025903	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025908	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025926	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025972	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027866	Populus root and rhizosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes)	Host-Associated	Open in IMG/M
3300027886	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost (SPAdes)	Environmental	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300028802	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 17_S	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300030590	Metatranscriptome of soil fungal communities from truffle orchard in Rollainville, France - Cb8 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031099	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031366	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 25_S	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032003	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D1	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032144	Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soil	Environmental	Open in IMG/M
3300032157	Garden soil microbial communities collected in Santa Monica, California, United States - V. faba soil	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1003780231	3300000364	Soil	MLQRHTMVRLTVALTAASARAADELLEGFQYLAVGTRLERGCXGCSAWMDSDSTIRYVEEWATEXDMRLRVRSXRFTSVLAIVESAREADVHFDFVTTTRGLEYVEEARKETLXXSDDATFREGARRS*
JGI10215J12807_15115681	3300000881	Soil	MLSNAGMVRLTVALNAPSARAAQVLLDSLRFLVMGTRLETGCLGCSAWMDPDLTVSHLEEWATEADMRRRVRSDGFTSLLTIAESVEDARIQFDFVTTT
JGI10216J12902_1038154692	3300000956	Soil	MVRLTVTLSASSQRNVQDLLEALRFLMLGTRLEPGCCDCSVWVNPDSTVHYVEEWQTEADMRTRVRSSDFTSLLSVIESVQQQPHVQFDFVSNTRGLDYVAQLRNGVLN*
JGI10216J12902_1074154362	3300000956	Soil	MERLLLGRHRMVRLTVALHATSTRRAHDLLEALRFLGLSARLEPGCLGCFSWADPDSTVHYVEEWEKETDMRQRVRSDRFTSLLAVVESGQDPQVQFDFVTETRGLDYVEEARTDATS*
F14TB_1118101941	3300001431	Soil	MGRLTVALNAASARSAQSLLDALRFLVLSTRLEPECLGCSAWSDPDLTVRYVEEWTTEAHIRQRVRSDSFTSLLSVIEAAREPRVQFEFVATTRGLDFVAEVRGHPLH*
C688J18823_101072992	3300001686	Soil	MREKRLLTSVGTAGAMGRGMVRLTVALNATSVRCAQDFLDAFRFLVLRTRLESGCLACSTWTEPDATVRYVEEWLTETDMRRRVQSEGFTAVLSIVEAARDPRVQFDFVTTTRGLDYVEEVRNDALI*
C688J35102_1188684181	3300002568	Soil	LLDAFHSLVIGTRLERGCVQCSAWMEPDSSVHYVEEWATEQDMRKRVQSTGFTSVLAVVESAREADVHFDFVSQTRGLDYVAEVRSKGA*
C688J35102_1189739641	3300002568	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGHQV*
C688J35102_1191711142	3300002568	Soil	RLLTSVGTAGAMGRGMVRLTVALNATSVRCAQDFLDAFRFLVLRTRLESGCLACSTWTEPDATVRYVEEWLTETDMRRRVQSEGFTAVLSIVEAARDPRVQFDFVTTTRGLDYVEEVRNDALI*
Ga0055468_100214932	3300003993	Natural And Restored Wetlands	MVRLAVVLHAPSTRCAQDLLEALRFLAVSTGLEPGCVQCLAWTDPDWTVHYVEEWTTEADMRRRVLSDRFTSLLGVVESALEPQVQFDFVTTQRGLDYISEVRAEVQR*
Ga0062593_1020922761	3300004114	Soil	MLVRPSMVRLTVGVTAASTRGADDLLEAFHSLVIGTRLERGCINCSAWMEPDSTVHYVEEWVTEQDMRKRVQSTGFTSVLAVVESAREADVHFDFVSETRGLDYVAEVRSKGA*
Ga0063455_1000446442	3300004153	Soil	MREKRLLTSVGTAGAMGRGMVRLTVALNATSVRCAQDFLDAFRFLVLRTRLESGCLACSTWTEPDATVRYVEEWLTETDMRRRVQSDGFTAVLSIVEAARDPRVQFDFVTTTRGLDYVEEVRNDAVI*
Ga0062589_1010985561	3300004156	Soil	DKRVSWRRGGLERAMLLRPSMVRLTVAVGAASARGADDLLDAFHSLVIGTRLERGCVNCSAWMEPDSTVHYVEEWTTEQDMRRRVQSNGFTSVLAVVESAREAEVHFDFVSETRGLDYIAEVRSKGA*
Ga0062589_1016117491	3300004156	Soil	MERLLLGRHRMVRLTVALHATSTRRAHDLLEALRFLGLSARLEPGCLGCFSWADPDSTVHYVEEWEKETDMRQRVRSDRFTSLLAVVESGQDPQVQFDFVTESRGLDYVEEARTDATS*
Ga0062590_1030305761	3300004157	Soil	MVRLTVALNAASTRSAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDG
Ga0058861_113548941	3300004800	Host-Associated	STRGADDLLEAFHSLVIGTRLERGCINCSAWMEPDSTVHYVEEWVTEQDMRKRVQSTGFTSVLAVVESAREADVHFDFVSETRGLDYVAEVRSKGA*
Ga0065715_106256821	3300005293	Miscanthus Rhizosphere	MPMSIGTSGATTAAMVRLTVALSAASARGAQDLLDALRFVVLSTRIEPGCLGCSAWTDPDSTIRYAEHWATEADMRRRVLSESFTSLLSVVESGCEPRV
Ga0070666_112088491	3300005335	Switchgrass Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTT
Ga0070668_1011598552	3300005347	Switchgrass Rhizosphere	MVRLSVALNANSARVAQDLVDALRFIVLGTRLDSACQGCSAWTDPDWTVHYVEQWATEADMRHRVCSERFTSLLAILESTDDPRVQFDFVTTTRGLEYVAQVRSELQS*
Ga0070671_1014678721	3300005355	Switchgrass Rhizosphere	MVRLTVVLTAASTRGADDLLDAFQYLVVSTRLERGCVGCSVWMDADATVHYVEDWATETDMRLRVRSERFTSVLAIVESAKEADVHFDFVTTTRGLEYVAEVRNQNP*
Ga0070674_1001904342	3300005356	Miscanthus Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGASS*
Ga0070711_1000860722	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTHTFREARQRVHSPQIRLVYPSRGGLEREVLRRHTMVRLTVVLTAASARGADDLLDAFQYLVVSTRLERGCVGCSVWMDADATVHYVEDWATETDMRLRVRSDRFTSVLAIVESAKEADVHFDFVTTTKGLEYVAEVRNQTP*
Ga0070663_1003976362	3300005455	Corn Rhizosphere	MVRLTVALNAASTRSAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGSQV*
Ga0070681_112627741	3300005458	Corn Rhizosphere	MLVRPSMVRLTVGVTAASTRGADDLLEAFHSLVIGTRLERGCINCSAWMEPDSTVHYVEEWVTEQDMRKRVQSTGFTSVLAVVESAREADVHF
Ga0070685_108470541	3300005466	Switchgrass Rhizosphere	VALSAASMRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSDRFTSLLSVVESAREATVHFDFVTKTRGLEYVAEVRNQTT*
Ga0070665_1003463922	3300005548	Switchgrass Rhizosphere	IMVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGSQV*
Ga0068861_1020058201	3300005719	Switchgrass Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGR
Ga0075365_108351431	3300006038	Populus Endosphere	MVRLSVALNAASARAAQDLVDALRFIVLGTRLDAACLGCSTWTEPDWTVHYVEQWATEADMRQRVRSDRFTSLLAILESTDGPRVQFDFVTTTRGLDYVAQVRGEMQA*
Ga0075363_1008209582	3300006048	Populus Endosphere	ALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGASS*
Ga0075369_105457261	3300006186	Populus Endosphere	ARIMVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGGQV*
Ga0075366_106370511	3300006195	Populus Endosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLERGCLVCSSWVDPDATVRYVEEWSTEADMRRRVSSEPFTSLLAVVESVQEPLVQFDFVTTTRGLDYVAEVRAGHA
Ga0068871_1020024562	3300006358	Miscanthus Rhizosphere	VALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGHQV*
Ga0079222_116241531	3300006755	Agricultural Soil	MVHSLRESRQRVHSPQIRLVYPSRGGLEREVLPRHTMVRLTVVLTAASARGADDLLDAFQYLVVSTRLERGCVGCSVWMDADAAVHYVEDWATETDMRLRVRSDRFTSVLAIVESAKEAD
Ga0079215_105827671	3300006894	Agricultural Soil	VERLVLSRTTMVRLTLILHASSTRSVRDLLEALRFLGASVQLEAGCLGCSAWAEPDWSVRYVEEWQTEMDMRQRVRSDRFTSLLSVMESAEEPGVTFDFVSTRRGLD
Ga0079218_104918322	3300007004	Agricultural Soil	MSTTGAAGGASGVERLVLQRRHMVRLTVILHASSTRSVRDLLEALRFLGASVQLEPGCLGCSAWAEPDWSVRYVEEWQTEAEMRRRVRSDRFTSLLSVMESAEDPHVTFDFVTTTRGLDYVEEARAGAGQ*
Ga0079218_128423791	3300007004	Agricultural Soil	TMVRLTLILHASSTRSVRDLLEALRFLGASVQLEAGCLGCSAWAEPDWSVRYVEEWQTELDMRQRVRSDRFTSLLSVVESAEEPDVTFDFVSTRRGLDYVEEVRTGAGR*
Ga0111539_102927593	3300009094	Populus Rhizosphere	MVRLTVALSAASMRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSERFTSLLSVVESAREATVHFDFVTKTRGLEYVAEVRNEST*
Ga0114129_100316818	3300009147	Populus Rhizosphere	MVRLTVVLHASSTRRAQDLLEALRFLGTGTRLVSGCLGCSAWKDPDGSLHYMEDCATEADIRRRVRSEHFTDVLSVVECAQDPQVQFDFVTTTRGLDYVAEVRGEVVNDERRRMGPK*
Ga0111538_101405632	3300009156	Populus Rhizosphere	MVRLTVALSAASMRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSERFTSLLSVVESAREATVHFDFVTKTRGLEYVAEVRNQST*
Ga0105249_101753703	3300009553	Switchgrass Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGAS*
Ga0134124_129691611	3300010397	Terrestrial Soil	TVDVKTLSSSHSVRAGLEQPMLPRHVMVRLTVALSAASMRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDMRARVRSDRFTSLLSVVETAREATVHFDFVTQTRGLEYVAEVRSQGT*
Ga0126383_117869012	3300010398	Tropical Forest Soil	MVRLTVVLTAASARGADDLLDAFQYLVVSTRLERGCVGCSVWMDADSTVHYVEDWAAETDMRMRVRSDRFTSVLAIVESAKEADVHFDFVTNTRGLEYIAEVRNQNP*
Ga0127502_100556462	3300011333	Soil	MVRLTIALHACTACIAQDLLDALRFLAVGTRLEPGCMACSAWSDANGVRYVEEWMTEADMRRRVRSDAFTSVLSIVESAAEPRVRFDFIATTRGLDYVAEVRNTAMS*
Ga0127502_104826871	3300011333	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRLGAS*
Ga0137433_12521432	3300011440	Soil	ASSTRSVRDLLEALRFLGASEQLENGCLGCSAWAEPDWSIRYVEEWQTEADMRQRVRSDRFTSLLSVMESAEEPHVTFDFVTTTRGLDYVEEARSGAGR*
Ga0120191_100413581	3300012022	Terrestrial	MVRLTVALNASSARGTQDLLEALRFLEVSTRLERGCLGCSAWVDPDSTVRHVEEWATEPDMRRRVCSDRFTTLLAVVESAREAQLQFDFVKEQRGLDYVEEARREAQ*
Ga0150985_1109392701	3300012212	Avena Fatua Rhizosphere	LTVALNGVPARSAQDFIDAFRFLALGTRFESGCLSCTTWTDPDSTVRYVDEWLTEADMRRRVQSSRFTSLLGIVESAKDPRVQFDFVTTTRGLDYVEEVRTPPDLNHR*
Ga0150985_1119854732	3300012212	Avena Fatua Rhizosphere	MGRGMVRLTVALNATSVRCAQDFLDAFRFLVLRTRLESGCLACSTWTEPDATVRYVEEWLTETDMRRRVQSDGFTAVLSIVEAARDPRVQFDFVTTTRGLDYVEEVRNDAVI*
Ga0150985_1214750422	3300012212	Avena Fatua Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSSWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGHQV*
Ga0157299_100069522	3300012899	Soil	MVRLTVALSAASMRGAHDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSDRFTSLLSVVESAREATVHFDFVTKTRGLEYVAEVRNQTT*
Ga0164301_101201893	3300012960	Soil	GRLRAELEQAMLNRHIIVRLTVALSAASMRGADDLLEAFHFLVVGTRLERGCLGCSAWIDPDSTVHYLEDWATEDDMRARVRSDRFTSLLAVVESAREANVHFDFVTKTRGLEYVAEVRNQNT*
Ga0164307_104436122	3300012987	Soil	MVRLSVALGAGSARDAQNLLDALRFLAVGTRLESGCLTCSAWTDPDWIVRYVEEWSSEPDVRRRVRSDQFTSVLAVVESAKDAHVQFDFVTTTLGL
Ga0157374_108942301	3300013296	Miscanthus Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFD
Ga0157375_103180731	3300013308	Miscanthus Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYAEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGHQV*
Ga0075313_10503231	3300014267	Natural And Restored Wetlands	MVRLAVVLHAPSTRCAQDLLEALRFLAVSTSLEPGCVQCLAWTDPDWTVHYVEEWTTEADMRRRVLSDRFTSLLGVVESALEPEVQFDFVTTRRGLDYIAEVRAEVQR*
Ga0157379_104097812	3300014968	Switchgrass Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMCRRVRSEPFTSLLSVVEAVQEPVVQFDFVTTTRGLDYVAEVRNGHQV*
Ga0157379_122087501	3300014968	Switchgrass Rhizosphere	MERLLLGRHRMVRLTVALHATSTRRAHDLLEALRFLGLSARLEPGCLGCFSWADPDSTVHYVEEWVTEQDMRKRVQSIGFTSVLAVVESAREADVHFDFVSQTRGLDYVAEVRSKGA*
Ga0173483_109268741	3300015077	Soil	SMRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSDRFTSLLSVVESAREATVHFDFVTKTRGLEYVAEVRNQTT*
Ga0180093_10424101	3300015258	Soil	MVRLTVALSAASQRSVQDLVEGLRFLMSGTRLESGCRECSVWVDPDSTVHYVEEWETEADMRQRVRSSRFTSLLGVIESANEPPRVQFDFVTTTRGLDYVAQVRDVPS*
Ga0132258_118712833	3300015371	Arabidopsis Rhizosphere	LEQAMLTRHTMVRLTVALSPASMRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEDDIRARVRSDRFTSLLAIVESAREANVHFDFVTKTRGLEYVAEVRSGSV*
Ga0132258_120022322	3300015371	Arabidopsis Rhizosphere	LNELEQAMLTRHTMVRLTVALSAASLRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSDRFTSLLAIVESAREANVHFDFVTKTRGLEYVAEVRNESV
Ga0132256_1008250991	3300015372	Arabidopsis Rhizosphere	RHRMVRLTVALHATSTRRAHDLLEALRFLGLSARLEPGCLGCFSWADPDSTVHYVEEWEKETDMRQRVRSDRFTSLLAVVESGQDPQVQFDFVTESRGLDYVEEARTDATS*
Ga0132257_1038862551	3300015373	Arabidopsis Rhizosphere	MERLLLGRHRMVRLTVALHATSTRRAHDLLEALRFLGLSARLEPGCLGCFSWADPDSTVHYVEEWEKETDMRQRVRSDRFTSLLAVVESGQDPQVQFDFVT
Ga0132255_1052382221	3300015374	Arabidopsis Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGGQV*
Ga0163161_112545461	3300017792	Switchgrass Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGHQV
Ga0190266_100818352	3300017965	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGASS
Ga0184628_103891202	3300018083	Groundwater Sediment	MVRLSVALKAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGASS
Ga0190268_104500671	3300018466	Soil	MVRLSVALNAVSARSAQDLVDALRFIVLGIRLDAACLGCSAWAEPDWTVHYVEQWATEADMRARVLSDRFTSLLAILESSEEPRVQFDFVTTTR
Ga0190268_108661091	3300018466	Soil	MLSNAGMVRLTVALNAPSARSAQVLLDSLRFLVMGTRLETGCLGCSAWMDPDLTVTHLESDGFTSLLTIAESVEDARIQFDFVTTTRGIDYVMQVRSDAST
Ga0190270_113872822	3300018469	Soil	VALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGRQVT
Ga0190274_101765232	3300018476	Soil	MVRLTVALNAASARGAQELLDALRFLGIGTRLEQGCLVCSCWADPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGAS
Ga0190271_128423181	3300018481	Soil	MVRLTVALNASSPRSAWNLLDALRFLTTATRLEPGCRECSVWVDPESTVHYIEAWESEDDMKRRVLSSRFTSLLAVIESADVPPQVSFDFVSSTRGLDYVTQVRQSPE
Ga0173482_101403802	3300019361	Soil	MVRLTVALNAASTRSAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGS
Ga0210380_104476631	3300021082	Groundwater Sediment	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGRQVT
Ga0247786_11056742	3300022883	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYV
Ga0247746_10528542	3300022886	Soil	MVRLTVALNAASTRSAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVTTTRGLDYVAEVRNGHQV
Ga0247797_10448911	3300023057	Soil	CGTTGARARIMVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGAS
Ga0207697_104994941	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	LDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSGVESVQEPVVQFDFVTTTRGLDYVAEVRNGHQV
Ga0207680_104469271	3300025903	Switchgrass Rhizosphere	VRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLSVVESVQEPVVQFDFVNTTRGLDYVAEVRNGHQV
Ga0207643_105387632	3300025908	Miscanthus Rhizosphere	SRSEFVRSELEQAMLPRHVMVRLTVALSAASMRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSDRFTSLLSVVESAREATVHFDFVTKTRGLEYVAEVRNQTT
Ga0207659_102928102	3300025926	Miscanthus Rhizosphere	MVRLTVALNAASTRSAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGSQV
Ga0207712_101151842	3300025961	Switchgrass Rhizosphere	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGAS
Ga0207668_109461902	3300025972	Switchgrass Rhizosphere	MVRLSVALNANSARVAQDLVDALRFIVLGTRLDSACQGCSAWTDPDWTVHYVEQWATEADMRHRVCSERFTSLLAILESTDDPRVQFDFVTTTRGLEYVAQVRSELQS
Ga0207640_112595401	3300025981	Corn Rhizosphere	TAAKARTMVRLTVALNAASTRSAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGSQV
Ga0209813_102522071	3300027866	Populus Endosphere	MVRLSVALNAASARAAQDLVDALRFIVLGTRLDAACLGCSTWTEPDWTVHYVEQWATEADMRQRVRSDRFTSLLAILESTDGPRVQFDFVTTTRGLDYVAQVRGEMQA
Ga0209486_108184232	3300027886	Agricultural Soil	DVERLVLSRTTMVRLTLILHASSTRSVRDLLEALRFLGASVQLEAGCLGCSAWAEPDWSVRYVEEWQTELDMRQRVRSDRFTSLLSVVESAEEPDVTFDFVSTRRGLDYVEEVRTGAGR
Ga0209486_110627251	3300027886	Agricultural Soil	MSTTGAAGGASGVERLVLQRRHMVRLTVILHASSTRSVRDLLEALRFLGASVQLEPGCLGCSAWAEPDWSVRYVEEWQTEAEMRRRVRSDRFTSLLSVMESAEDPHVTFDFVTTTRGLDYVEEARAGAGQ
Ga0247828_102918352	3300028587	Soil	VLLLCIMVRLTVALNAESARTSRDLLEALRFLALSARIEPGCQACSAWVDSDATVRYVEEWATEADMRRRVRSDGFTSVLAVVEAAQEPQVHFDFVTTTRGLDYVEEVRADDGM
Ga0247818_112621202	3300028589	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTT
Ga0247822_101494671	3300028592	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDVVE
Ga0307503_103587562	3300028802	Soil	MVRLTVAVNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGAS
Ga0247825_105712662	3300028812	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDVV
Ga0247643_11918922	3300030590	Soil	VALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEGDIRRRVGSDRFTLVLSLLESVREAPHVQFDFVSTTRGLDYVAEVRQHHSST
Ga0308183_11957862	3300030988	Soil	VGVSAASARGADDLLEAFHSLVIGTRLERGCINCSAWMEPDSTVHYVEEWVTEQDMRKRVQSTGFTSVLAVVESAREADVHFDFVSETRGLDYVAEVRSQKGA
Ga0308181_11684302	3300031099	Soil	LTVGVSAASARGADDLLEAFHSLVIGTRLERGCINCSAWMEPDSTVHYVEEWVTEQDMRKRVQSTGFTSVLAVVESAREADVHFDFVSETRGLDYVAEVRSQKGA
Ga0307506_105296171	3300031366	Soil	MLLRPTMVRLTVGVSAASARGADELLEAFHSLVIGTRLERACINCSAWMEPDSTVHYVEEWATEQDMRRRVQSNGFTSVLAVVESAREADVHFDFVSETRGLDYVA
Ga0307408_1010959822	3300031548	Rhizosphere	TVTLNASSQRYVQELLEALRFLMLGIRLQPGCRECSVWVDPESTVHYIEEFETEADMQQRVRSAKFTSLLGVIESAHQPPSVQFDFVTTSRGLDYVSQVRNHAPN
Ga0310813_103470122	3300031716	Soil	MTHSFSESRQRVHSPQIRLVYPSRGGLEREVLRRHTMVRLTVVLTAASTRGADDLLDAFQYLVVSTRLERGCVGCSVWMDADATVHYVEDWATETDMRLRVRSERFTSVLAIVESAKEADVHFDFVTT
Ga0307406_112848162	3300031901	Rhizosphere	SARSAQDLVDALRFIVLGIRLDAACLGCSAWAEPDWSVHYVEQWATEADMRQRVRSDRFTSLLAILESTDDPRVQFDFVTTTRGLDYVEQVRGELQT
Ga0308175_1000103652	3300031938	Soil	MLQRPSMVRLTVGVSAASARGADELLEAFHSLVIGTRLERGCINCSAWMEPDSTVHYVEEWVTEQDMRKRVQSTGFTSVLAVVESAREADVHFDFVSETRGLDYVAEVRSHGI
Ga0307409_1008821052	3300031995	Rhizosphere	MVRLSVALNAASARSAQDLVDALRFIVLGIRLDAACLGCSAWAEPDWSVHYVEQWATEADMRQRVRSDRFTSLLAILESTDDPRVQFDFVTTTRGLDYVEQVRGELQT
Ga0308176_100066163	3300031996	Soil	MLQRPSMVRLTVGVSAASARGADELLEAFHSLVIGTRLERGCINCSAWMEPDSTVHYVEEWVTEQDMRKRVQSTGFTSVLAVVESAREADVHFDFVSETRGLDYVAEVRSQGV
Ga0310897_100665622	3300032003	Soil	MVRLTVALNAASTRGAQELLDALRFLGIGTRLEQGCLVCSCWVDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQGA
Ga0310890_104171892	3300032075	Soil	GRSELEQAMLPRHVMVRLTVALSAASVRGADDLLEAFHFLVVGTRLERGCLGCSTWIDPDSTVHYVEEWATEEDIRARVRSERFTSLLSVVESAREATVHFDFVTKTRGLEYVAEVRNQS
Ga0310890_110552292	3300032075	Soil	LLDALRFLGIGTRLEQGCLVCSCWDDPDATVRYVEEWSTEADMRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRDGSQV
Ga0310890_111370381	3300032075	Soil	MVRLTVALSASSQRCVQDLLEGLRFLMSGTRLEPGCRECSLWVDPDSMVHYFEEWETEADMRQRVRSSRFTSLLGVIESANEPPRVQFDFVTSTRGLDYVAQVRSD
Ga0315910_107367782	3300032144	Soil	MVRLTIALNASSPRSAWNLLDALRFLTTGTRLEPGCRECSVWVDPESTVHYIEGWETEDDMKRRVLSSRFTSLLAVIESADVPPQVRFDFVSSTRGLDYVTQLRQSPE
Ga0315912_101810212	3300032157	Soil	MVRLTVALNAASARGAQELLDALRFLGIGTRLEQGCLVCSCWADPDATVRYVEEWATEADIRRRVRSEPFTSLLAVVESVQEPVVQFDFVTTTRGLDYVAEVRNGRQAS
Ga0310810_105829861	3300033412	Soil	MTHSFSESRQRVHSPQIRLVYPSRGGLEREVLRRHTMVRLTVVLTAASTRGADDLLDAFQYLVVSTRLERGCVGCSVWMDADATVHYVEDWATETDMRLRVRSERFTSVLAIVESAKEADVHFDFVTTTRGLEYVAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F089164

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences