Metagenome Family F089131

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F089131
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	51 residues
Representative Sequence	MLCEQCHTLMIERPVTREMEDAHHEQAIVLECPQCGHTEYQPVIASFWRRLAA
Number of Associated Samples	89
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	58.72 %
% of genes near scaffold ends (potentially truncated)	33.03 %
% of genes from short scaffolds (< 2000 bps)	74.31 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.49

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.725 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (17.431 % of family members)
Environment Ontology (ENVO)	Unclassified (22.936 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.706 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.64% β-sheet: 18.52% Coil/Unstructured: 72.84%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.49
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.49
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF04945	YHS	33.03
PF00072	Response_reg	6.42
PF00076	RRM_1	3.67
PF00196	GerE	1.83
PF12732	YtxH	1.83
PF13442	Cytochrome_CBB3	0.92
PF02148	zf-UBP	0.92
PF12710	HAD	0.92
PF07366	SnoaL	0.92
PF03641	Lysine_decarbox	0.92
PF13628	DUF4142	0.92
PF00702	Hydrolase	0.92
PF00561	Abhydrolase_1	0.92
PF00582	Usp	0.92
PF07992	Pyr_redox_2	0.92
PF00128	Alpha-amylase	0.92
PF13414	TPR_11	0.92
PF11345	DUF3147	0.92
PF07719	TPR_2	0.92
PF04679	DNA_ligase_A_C	0.92
PF00753	Lactamase_B	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0296	1,4-alpha-glucan branching enzyme	Carbohydrate transport and metabolism [G]	0.92
COG0366	Glycosidase/amylase (phosphorylase)	Carbohydrate transport and metabolism [G]	0.92
COG1523	Pullulanase/glycogen debranching enzyme	Carbohydrate transport and metabolism [G]	0.92
COG1611	Nucleotide monophosphate nucleosidase PpnN/YdgH, Lonely Guy (LOG) family	Nucleotide transport and metabolism [F]	0.92
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.92
COG3280	Maltooligosyltrehalose synthase	Carbohydrate transport and metabolism [G]	0.92
COG5207	Uncharacterized Zn-finger protein, UBP-type	General function prediction only [R]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.72 %
Unclassified	root	N/A	30.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Nitrospirae	phylum	All Organisms → cellular organisms → Bacteria → Nitrospirae	23.85 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Nitrospira	class	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira	14.68 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	5.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.92 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Nitrospirales	order	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales	14.68 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.50 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.92 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Nitrospiraceae	family	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae	12.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.50 %
unclassified Nitrospirales	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales	1.83 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %
Bifidobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Nitrospira	genus	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	12.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.50 %
Nitrospirales bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	1.83 %
Bifidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.50 %
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	4.59 %
Nitrospirales bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	1.83 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.92 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	0.92 %
unclassified Nitrospira	no rank	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	30.28 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5.50 %
Nitrospira japonica	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	4.59 %
Nitrospirales bacterium	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	1.83 %
Nitrospira sp. KM1	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. KM1	0.92 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.92 %
Nitrospira moscoviensis	species	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	0.92 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459019\|G14TP7Y01DEKRL	Not Available	581	Open in IMG/M
3300000559\|F14TC_101573446	All Organisms → cellular organisms → Bacteria	3526	Open in IMG/M
3300000787\|JGI11643J11755_11659686	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300000787\|JGI11643J11755_11660137	Not Available	1173	Open in IMG/M
3300000881\|JGI10215J12807_1098848	All Organisms → cellular organisms → Bacteria	3741	Open in IMG/M
3300000891\|JGI10214J12806_10481860	All Organisms → cellular organisms → Bacteria	3694	Open in IMG/M
3300000953\|JGI11615J12901_11993581	Not Available	764	Open in IMG/M
3300001989\|JGI24739J22299_10036119	All Organisms → cellular organisms → Bacteria → Nitrospirae	1671	Open in IMG/M
3300001990\|JGI24737J22298_10058282	All Organisms → cellular organisms → Bacteria → Nitrospirae	1165	Open in IMG/M
3300003319\|soilL2_10025278	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300003321\|soilH1_10209202	All Organisms → cellular organisms → Bacteria → Nitrospirae	2039	Open in IMG/M
3300003347\|JGI26128J50194_1002911	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1128	Open in IMG/M
3300003383\|JGI26140J50224_100462	All Organisms → cellular organisms → Bacteria → Nitrospirae	1784	Open in IMG/M
3300004156\|Ga0062589_100021568	All Organisms → cellular organisms → Bacteria	3062	Open in IMG/M
3300004156\|Ga0062589_102830086	Not Available	506	Open in IMG/M
3300004479\|Ga0062595_100200291	All Organisms → cellular organisms → Bacteria → Nitrospirae	1234	Open in IMG/M
3300004633\|Ga0066395_10332770	All Organisms → cellular organisms → Bacteria	839	Open in IMG/M
3300004643\|Ga0062591_100159065	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300004643\|Ga0062591_101203522	Not Available	738	Open in IMG/M
3300005168\|Ga0066809_10205027	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	534	Open in IMG/M
3300005328\|Ga0070676_10148072	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1500	Open in IMG/M
3300005332\|Ga0066388_100082164	All Organisms → cellular organisms → Bacteria	3600	Open in IMG/M
3300005332\|Ga0066388_100359025	Not Available	2104	Open in IMG/M
3300005335\|Ga0070666_11512066	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira moscoviensis	502	Open in IMG/M
3300005337\|Ga0070682_100205461	All Organisms → cellular organisms → Bacteria → Nitrospirae	1392	Open in IMG/M
3300005340\|Ga0070689_100005649	All Organisms → cellular organisms → Bacteria	8569	Open in IMG/M
3300005340\|Ga0070689_100560710	Not Available	985	Open in IMG/M
3300005340\|Ga0070689_101839769	Not Available	552	Open in IMG/M
3300005439\|Ga0070711_100576595	Not Available	936	Open in IMG/M
3300005713\|Ga0066905_100052723	All Organisms → cellular organisms → Bacteria	2502	Open in IMG/M
3300005718\|Ga0068866_10305765	All Organisms → cellular organisms → Bacteria → Nitrospirae	995	Open in IMG/M
3300005764\|Ga0066903_100333720	All Organisms → cellular organisms → Bacteria → Proteobacteria	2434	Open in IMG/M
3300005937\|Ga0081455_10000923	All Organisms → cellular organisms → Bacteria	37627	Open in IMG/M
3300006196\|Ga0075422_10236329	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300006237\|Ga0097621_101670449	Not Available	606	Open in IMG/M
3300006844\|Ga0075428_100223560	All Organisms → cellular organisms → Bacteria → Nitrospirae	2033	Open in IMG/M
3300006845\|Ga0075421_100016985	All Organisms → cellular organisms → Bacteria	9101	Open in IMG/M
3300006846\|Ga0075430_100355335	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1210	Open in IMG/M
3300006852\|Ga0075433_10431821	All Organisms → cellular organisms → Bacteria	1161	Open in IMG/M
3300006871\|Ga0075434_100902038	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300006871\|Ga0075434_102271861	Not Available	546	Open in IMG/M
3300006894\|Ga0079215_10741849	Not Available	673	Open in IMG/M
3300006894\|Ga0079215_11578261	Not Available	521	Open in IMG/M
3300006903\|Ga0075426_10045984	All Organisms → cellular organisms → Bacteria	3119	Open in IMG/M
3300006904\|Ga0075424_100718370	All Organisms → cellular organisms → Bacteria	1067	Open in IMG/M
3300006904\|Ga0075424_101409611	Not Available	740	Open in IMG/M
3300006954\|Ga0079219_10661155	Not Available	783	Open in IMG/M
3300006954\|Ga0079219_11088931	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	676	Open in IMG/M
3300007004\|Ga0079218_10091354	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	2059	Open in IMG/M
3300009094\|Ga0111539_10867471	All Organisms → cellular organisms → Bacteria	1050	Open in IMG/M
3300009100\|Ga0075418_10951996	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	929	Open in IMG/M
3300009147\|Ga0114129_10007602	All Organisms → cellular organisms → Bacteria	15425	Open in IMG/M
3300009147\|Ga0114129_10129538	All Organisms → cellular organisms → Bacteria	3467	Open in IMG/M
3300009147\|Ga0114129_12196608	Not Available	664	Open in IMG/M
3300009156\|Ga0111538_13569271	Not Available	539	Open in IMG/M
3300009800\|Ga0105069_1007428	Not Available	874	Open in IMG/M
3300010043\|Ga0126380_10066590	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	2023	Open in IMG/M
3300010046\|Ga0126384_10049074	All Organisms → cellular organisms → Bacteria	2901	Open in IMG/M
3300010046\|Ga0126384_10055274	All Organisms → cellular organisms → Bacteria	2758	Open in IMG/M
3300010358\|Ga0126370_10123096	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300010358\|Ga0126370_11578773	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	627	Open in IMG/M
3300010359\|Ga0126376_12636369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	551	Open in IMG/M
3300010362\|Ga0126377_10059426	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	3361	Open in IMG/M
3300010362\|Ga0126377_10690877	Not Available	1072	Open in IMG/M
3300012884\|Ga0157300_1071203	Not Available	590	Open in IMG/M
3300012896\|Ga0157303_10011169	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300012916\|Ga0157310_10000063	All Organisms → cellular organisms → Bacteria	12846	Open in IMG/M
3300012941\|Ga0162652_100104855	All Organisms → cellular organisms → Bacteria	509	Open in IMG/M
3300012948\|Ga0126375_10330330	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → unclassified Nitrospirales → Nitrospirales bacterium	1072	Open in IMG/M
3300012951\|Ga0164300_10051964	Not Available	1624	Open in IMG/M
3300012957\|Ga0164303_10299332	Not Available	947	Open in IMG/M
3300012958\|Ga0164299_10205647	All Organisms → cellular organisms → Bacteria	1142	Open in IMG/M
3300012958\|Ga0164299_11523807	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	523	Open in IMG/M
3300012960\|Ga0164301_10054499	Not Available	2081	Open in IMG/M
3300012961\|Ga0164302_10071937	All Organisms → cellular organisms → Bacteria	1809	Open in IMG/M
3300012986\|Ga0164304_10351876	Not Available	1029	Open in IMG/M
3300012987\|Ga0164307_10486081	Not Available	930	Open in IMG/M
3300012987\|Ga0164307_11618298	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300012988\|Ga0164306_10809157	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → unclassified Nitrospira → Nitrospira sp. KM1	755	Open in IMG/M
3300012989\|Ga0164305_10830825	Not Available	769	Open in IMG/M
3300015371\|Ga0132258_11250339	All Organisms → cellular organisms → Bacteria	1877	Open in IMG/M
3300015373\|Ga0132257_101904825	Not Available	765	Open in IMG/M
3300018466\|Ga0190268_10072700	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1478	Open in IMG/M
3300019356\|Ga0173481_10000065	All Organisms → cellular organisms → Bacteria	16094	Open in IMG/M
3300019361\|Ga0173482_10000681	All Organisms → cellular organisms → Bacteria	6369	Open in IMG/M
3300023057\|Ga0247797_1010775	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1088	Open in IMG/M
3300025907\|Ga0207645_10527457	All Organisms → cellular organisms → Bacteria	800	Open in IMG/M
3300025915\|Ga0207693_11317060	Not Available	540	Open in IMG/M
3300025920\|Ga0207649_10454914	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	967	Open in IMG/M
3300025925\|Ga0207650_10495053	Not Available	1021	Open in IMG/M
3300025940\|Ga0207691_10198033	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	1749	Open in IMG/M
3300026118\|Ga0207675_100199092	All Organisms → cellular organisms → Bacteria	1923	Open in IMG/M
3300027526\|Ga0209968_1002366	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	2854	Open in IMG/M
3300028380\|Ga0268265_10784850	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300028587\|Ga0247828_10666082	Not Available	643	Open in IMG/M
3300031538\|Ga0310888_10193037	All Organisms → cellular organisms → Bacteria	1115	Open in IMG/M
3300031547\|Ga0310887_10086693	All Organisms → cellular organisms → Bacteria → Nitrospirae	1516	Open in IMG/M
3300031548\|Ga0307408_100080105	All Organisms → cellular organisms → Bacteria	2438	Open in IMG/M
3300031548\|Ga0307408_100340717	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300031548\|Ga0307408_100639092	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	950	Open in IMG/M
3300031562\|Ga0310886_10697803	Not Available	631	Open in IMG/M
3300031716\|Ga0310813_10011430	All Organisms → cellular organisms → Bacteria	5752	Open in IMG/M
3300031716\|Ga0310813_10794763	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	851	Open in IMG/M
3300031847\|Ga0310907_10219296	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira	919	Open in IMG/M
3300031903\|Ga0307407_11675430	Not Available	506	Open in IMG/M
3300031913\|Ga0310891_10113130	Not Available	847	Open in IMG/M
3300031940\|Ga0310901_10108544	All Organisms → cellular organisms → Bacteria → Nitrospirae	1013	Open in IMG/M
3300032013\|Ga0310906_10192527	All Organisms → cellular organisms → Bacteria → Nitrospirae → Nitrospira → Nitrospirales → Nitrospiraceae → Nitrospira → Nitrospira japonica	1230	Open in IMG/M
3300032174\|Ga0307470_10909326	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	64.22%
Host-Associated	Host-Associated	34.86%
Engineered	Engineered	0.92%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	64.22%
Plants	Host-Associated → Plants	34.86%
Solid Waste	Engineered → Solid Waste	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	63.30%
Rhizosphere	Host-Associated → Plants → Rhizosphere	23.85%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.09%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.92%
Roots	Host-Associated → Plants → Roots	0.92%
Grass	Engineered → Solid Waste → Grass	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	51.38%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	18.35%
Loam	Environmental → Terrestrial → Soil → Loam	11.01%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	8.26%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.83%
Sand	Environmental → Terrestrial → Soil → Sand	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.92%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.92%
Composting	Engineered → Solid Waste → Grass → Composting	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	18.35%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	11.93%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	8.26%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.34%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.50%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	4.59%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	4.59%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.92%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.92%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.92%
Unclassified	Engineered → Solid Waste → Grass → Composting → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	17.43%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	14.68%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	4.59%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	2.75%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	2.75%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	2.75%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.92%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.92%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.92%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.92%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.92%
Switchgrass, Maize And Mischanthus Litter	Engineered → Solid Waste → Grass → Composting → Unclassified → Switchgrass, Maize And Mischanthus Litter	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459019	Litter degradation MG4	Engineered	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000881	Soil microbial communities from Great Prairies - Wisconsin Restored Prairie soil	Environmental	Open in IMG/M
3300000891	Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300001989	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5	Host-Associated	Open in IMG/M
3300001990	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3	Host-Associated	Open in IMG/M
3300003319	Sugarcane bulk soil Sample L2	Environmental	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003347	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM	Host-Associated	Open in IMG/M
3300003383	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S AM	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005168	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC	Environmental	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005340	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005718	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006196	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1	Host-Associated	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006894	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Control	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009800	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_30_40	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300012884	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2	Environmental	Open in IMG/M
3300012896	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S118-311C-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012986	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300023057	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S136-409B-6	Environmental	Open in IMG/M
3300025907	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025920	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025925	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025940	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027526	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028587	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031847	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4	Environmental	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M
3300031913	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D4	Environmental	Open in IMG/M
3300031940	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
4MG_03261910	2170459019	Switchgrass, Maize And Mischanthus Litter	MLCEQCHTLMIERPVTRKMEDNQDEQAIVLECPQCGQTEYQPVIASFWRRLAA
F14TC_1015734465	3300000559	Soil	MLCEQCHTLMIERPITREMEDAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA*
JGI11643J11755_116596863	3300000787	Soil	MLCEQCHTLMIERPVTRKMEDNHDEQAIVLECPQCGQTEYQPVIASFWRRL
JGI11643J11755_116601371	3300000787	Soil	MLCEQCHTLMIERPVTRKMEDNQDEQAIVLECPQCGQTEYQPVIASFWRRL
JGI10215J12807_10988481	3300000881	Soil	EGAMLCEQCHTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
JGI10214J12806_104818601	3300000891	Soil	PVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
JGI11615J12901_119935812	3300000953	Soil	MIERPVTRKMEDNHDEQAIVLECPKCGQTEYQPVIASFWRRLAA*
JGI24739J22299_100361191	3300001989	Corn Rhizosphere	RKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
JGI24737J22298_100582821	3300001990	Corn Rhizosphere	GAMLCEQCHTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
soilL2_100252781	3300003319	Sugarcane Root And Bulk Soil	IERPPTREVEDVDNEKLIVLQCPQCGRTESQPVIASFWRRLAA*
soilH1_102092021	3300003321	Sugarcane Root And Bulk Soil	LRKKAAMICEQCDALMLEKLPTRQREEAGEEKAILFECPQCGHTEYQRLIASFWRRLAA*
JGI26128J50194_10029111	3300003347	Arabidopsis Thaliana Rhizosphere	MLCEQCHTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
JGI26140J50224_1004626	3300003383	Arabidopsis Thaliana Rhizosphere	MLCEQCHTLMXERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
Ga0062589_1000215683	3300004156	Soil	MICEQCHAPMMEKPAIRQREDADEEQVIVLECRQCGHTEERPLIASFWRRLAA*
Ga0062589_1028300861	3300004156	Soil	IERPATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA*
Ga0062595_1002002913	3300004479	Soil	MLCEQCHTLMIERPVTRKMEDNQDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
Ga0066395_103327702	3300004633	Tropical Forest Soil	MRCEKCHALMIERPHIGHKEENDKEQAIVFECPKCGHIEYQPLITSFWRRLAA*
Ga0062591_1001590651	3300004643	Soil	MIEKLPPQDREDAHEEQAIALECPQCGHTEYQPLITSFWRRLAA*
Ga0062591_1012035221	3300004643	Soil	MLCEQCHTLMIERPVTRKMEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
Ga0066809_102050272	3300005168	Soil	MLCEQCHTLMIERPVTREMEDAHHEQAIVLECPQCGRTEYQPVIASFWRRLAA*
Ga0070676_101480722	3300005328	Miscanthus Rhizosphere	MRCERCHAQMIEKLPPQDREDAHEEQAIVLECPQCGHTEYQPLITSFWRRLAA*
Ga0066388_1000821642	3300005332	Tropical Forest Soil	MRCEKCHALMIEKPHIGHEEETDKEQAIVFECPKCGHTEYQPLITSFWRRLAA*
Ga0066388_1003590251	3300005332	Tropical Forest Soil	MRCEKCHALMIERPHIGHKEENDKEQAIVFECPKCGHIEYQPLIRSFWRRLAA*
Ga0070666_115120661	3300005335	Switchgrass Rhizosphere	MIEKLPPQDREDAHEEQAIVLECPQCGHTEYQPLITSFWRRLAA*
Ga0070682_1002054611	3300005337	Corn Rhizosphere	CEQCHAPMIERPATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA*
Ga0070689_1000056497	3300005340	Switchgrass Rhizosphere	MLCEQCHTLMIERPVTLKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
Ga0070689_1005607102	3300005340	Switchgrass Rhizosphere	MICEQCHAPMMEKPATRQREDSDEEQVIVLECRQCGHTEERPLIASFWRRLAA*
Ga0070689_1018397691	3300005340	Switchgrass Rhizosphere	MICEQCHAPMIERPATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA*
Ga0070711_1005765952	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MLCEQCHALMIERPVTREMEDTDNKQAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0066905_1000527233	3300005713	Tropical Forest Soil	MRCEKCHALMIEKPHIGHEEETDKEQAIVFECSKCGHTEYQPLITSFWRRLAA*
Ga0068866_103057653	3300005718	Miscanthus Rhizosphere	RPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
Ga0066903_1003337205	3300005764	Tropical Forest Soil	MRCEKCHALMIERPHVGHEEGTDKEQAIVFECPKCGHTEYQPLITSFWRRLAA*
Ga0081455_1000092336	3300005937	Tabebuia Heterophylla Rhizosphere	MRCEKCQALMIERPPIQKMEDPDEEQAIVLECPQCGHTEYQPLITSFWRRLAA*
Ga0075422_102363292	3300006196	Populus Rhizosphere	MRCEQCHAEMIERPQMKDIDEERAIVLECPKCGHTEYQPLITSFWRKWGLH*
Ga0097621_1016704492	3300006237	Miscanthus Rhizosphere	MVGLPISMEAAMRCEQCHAELIERPLIRQMKHTDEERAIVLECQKCGHTEYQPLITSFWRRLAA*
Ga0075428_1002235601	3300006844	Populus Rhizosphere	MTCEQCHAIMIERCPAPENEAADGEQAIVLECPQCGHTEH
Ga0075421_1000169856	3300006845	Populus Rhizosphere	MTCEQCHAIMIERCPAPENEAADGEQAIVLECPQCGHTEHQPLITSFWRRLAA*
Ga0075430_1003553352	3300006846	Populus Rhizosphere	MMCEQCHVLMIERLPARENQGSDKEQAVVLECPQCGHTEYQPLITSFWRRLAA*
Ga0075433_104318213	3300006852	Populus Rhizosphere	MLCEQCHTLMIERPVTRKMEDNHDEQAIVLECPQCGQTEYQPVISSFWRRLAA*
Ga0075434_1009020381	3300006871	Populus Rhizosphere	LISREGAMLCEQCHTLMIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA
Ga0075434_1022718612	3300006871	Populus Rhizosphere	MEAAMICEKCHGLMIERPLIRGMDDAEEKQAVIAKCIECGHIEYQPIVASFWRRLAA*
Ga0079215_107418491	3300006894	Agricultural Soil	MMCEQCHALMIERLPARENEDSNKEQAVVLECTRCGHTEYQPLITSFWRRLAA*
Ga0079215_115782611	3300006894	Agricultural Soil	MMCEQCHAFMIERLPARENEEANNKQAIVLECPQCGHTEYQPLITSFWRRLAA*
Ga0075426_100459845	3300006903	Populus Rhizosphere	MLCEQCHTLMIERPVTREMEDNHNEQAIVLECPQCGQTEYQPVIASFWR
Ga0075424_1007183703	3300006904	Populus Rhizosphere	MLCEQCHTLMIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0075424_1014096112	3300006904	Populus Rhizosphere	AGVSLFRLKSFIKREAIMLCEQCHALMIERPVTREMEDADNKQAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0079219_106611551	3300006954	Agricultural Soil	MRCEQCHALIDDASHIQYKEETDEEKAIVFQCPQCGHTEYQPLIESFWRRLAA*
Ga0079219_110889313	3300006954	Agricultural Soil	MLCEQCHTLMIERPVTRKMEDNHDEQAIVLECPKCGQTEYQPVIASFWRRLAA*
Ga0079218_100913543	3300007004	Agricultural Soil	MCEQCHALMIERLPARENEDSNKEQAVVLECTRCGHTEYQPLITSFWRRLAA*
Ga0111539_108674711	3300009094	Populus Rhizosphere	MIERPVTREMEDNHNEQAIVLECPQCGQTEYQPVIASFWRRL
Ga0075418_109519962	3300009100	Populus Rhizosphere	MIERPVTREMEDNHNEQAIVLECPQCGQTEYQPVIASFWRRLAA*
Ga0114129_100076023	3300009147	Populus Rhizosphere	MICEQCHVQMIERVPSREMDDADEGQVILLECSQCGRTEYQALITSFWRRLAA*
Ga0114129_101295385	3300009147	Populus Rhizosphere	MICEQCHALMIERPPIRQIEDADEEQAIVLECPQCGHSEYQPLIVSFWRRLAA*
Ga0114129_121966081	3300009147	Populus Rhizosphere	LPSMVGLPIYMEAAMRCEQCHAEMIERPQMKDIDEERAIVLECPKCGHTEYQPLITSFWRKWGLH*
Ga0111538_135692711	3300009156	Populus Rhizosphere	EMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0105069_10074281	3300009800	Groundwater Sand	MIERPVTREMEDAHDEQAIVLECPQCGQTEYQPVI
Ga0126380_100665906	3300010043	Tropical Forest Soil	MIEKPHIGHEEETDKEQAIVFECSKCGHTEYQPLITSFWRRLAA*
Ga0126384_100490748	3300010046	Tropical Forest Soil	MIEKPHIGYEEETDKEQAIVFECPKCGHTEYQPLITSFWRRLAA*
Ga0126384_100552744	3300010046	Tropical Forest Soil	MKCEKCHALMIEKPHIGYDEETDKEQAIVFECSKCGHTEYQPLITSFWRRLAA*
Ga0126370_101230964	3300010358	Tropical Forest Soil	MIEKPHIGHEEETDKEQAIVFECPKCGHTEYQPLITSFWRRLAA*
Ga0126370_115787733	3300010358	Tropical Forest Soil	MRCEKCHALMIERPHVGHEEGTDKEQAIVFECPKCGHTEYQPLIT
Ga0126376_126363692	3300010359	Tropical Forest Soil	MRCEQCHALIDDASHIQYKEEADEEKAIVFECPHCGHTEYQPLIASFWRRLAA*
Ga0126377_100594267	3300010362	Tropical Forest Soil	MRCEKCHALMIEKPHIGHEEETDKERAIVFECPKCGHTEYQPLITSFWRRLAA*
Ga0126377_106908772	3300010362	Tropical Forest Soil	ALMIEKPHIGHEEETDKEQAIVFECPKCGHTEYQPLITSFWRRLAA*
Ga0157300_10712031	3300012884	Soil	HTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVISSFWRRLAA*
Ga0157303_100111692	3300012896	Soil	MIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA*
Ga0157310_1000006311	3300012916	Soil	MLCEQCHTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVISSFWRRLAA*
Ga0162652_1001048552	3300012941	Soil	MIERPVTREMEDAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0126375_103303304	3300012948	Tropical Forest Soil	MIEKPHIGHDEEADKEQAIVFECSKCGHTEYQPLITSFWRRLAA*
Ga0164300_100519644	3300012951	Soil	MIERPVTREMEDAHHEQAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0164303_102993322	3300012957	Soil	MQCEKCHALMIERPVTQEMKDADDKQAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0164299_102056473	3300012958	Soil	MQCEKCHALMIERPVTREMKDADDKQAVVLECPQCGHTEYQPVIASFWRRLAA*
Ga0164299_115238071	3300012958	Soil	MIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASF
Ga0164301_100544993	3300012960	Soil	MLCEQCHTLMIERPVTREMEDAHHEQAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0164302_100719373	3300012961	Soil	MQCEKCHALMIERPVTREMKDADDKQAIVLECTQCGHTEYQPVIASFWRRLAA*
Ga0164304_103518761	3300012986	Soil	MLCEQCHTLMIERPVTREMKDADDKQAVVLECPQCGHTEYQPVIASFWRRLAA*
Ga0164307_104860811	3300012987	Soil	VEILISREGAMLCEQCHTLMIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0164307_116182981	3300012987	Soil	MIERPVTQEMKDADDKQAIVLECPQCGHTEYQPVI
Ga0164306_108091572	3300012988	Soil	EILISREGAMLCEQCHTLMIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0164305_108308251	3300012989	Soil	NREGAMLCEQCHTLMIERPVTREMEDAHHEQAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0132258_112503393	3300015371	Arabidopsis Rhizosphere	MIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA*
Ga0132257_1019048251	3300015373	Arabidopsis Rhizosphere	MICEQCHGLMIERPPILKLDDAEVEQVVVLECTECGHIQYQPLITSFWRRL
Ga0190268_100727001	3300018466	Soil	MTCEQCHALMIERLPARENEDSDKEQAVVLECPQCGHTEHQPLITSFWRRLAA
Ga0173481_100000656	3300019356	Soil	MLCEQCHTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA
Ga0173482_100006817	3300019361	Soil	MLCEQCHTLMIEQPVTRKMEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA
Ga0247797_10107751	3300023057	Soil	GAMLCEQCHTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA
Ga0207645_105274572	3300025907	Miscanthus Rhizosphere	MIEKLPPQDREDAHEEQAIVLECPQCGHTEYQPLITSFWRRLAA
Ga0207693_113170601	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MLCEQCHALMIERPVTREMEDTDNKQAIVLECPQCGHTEYQPVIAS
Ga0207649_104549143	3300025920	Corn Rhizosphere	IERPATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA
Ga0207650_104950532	3300025925	Switchgrass Rhizosphere	MICEQCHAPMIERPATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA
Ga0207691_101980331	3300025940	Miscanthus Rhizosphere	QCHAPMIERPATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA
Ga0207675_1001990923	3300026118	Switchgrass Rhizosphere	MLCEQCHTLMIERPVTLKTEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA
Ga0209968_10023664	3300027526	Arabidopsis Thaliana Rhizosphere	MLCEQCHTLMIERPVTRKTEDNHDEQAIVLECPQCGQTEYQPVISSFWRRLAA
Ga0268265_107848502	3300028380	Switchgrass Rhizosphere	MLCEQCHTLMIERPVTRKMEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA
Ga0247828_106660821	3300028587	Soil	KEGAMLCEQCHTLMIERPVTRKMEDNHDEQAIVLECPQCGQTEYQPVIASFWRRLAA
Ga0310888_101930371	3300031538	Soil	MLCEQCHTLMIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA
Ga0310887_100866935	3300031547	Soil	MLCEQCHTLMIERPITREMEDAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA
Ga0307408_1000801053	3300031548	Rhizosphere	MTCEQCHALMIERLPARENQDSDKEQAVVLECPQCGHTEYQPLITSFWRRLAA
Ga0307408_1003407173	3300031548	Rhizosphere	MIETPRIKELEGDAKRPAMVLECPRCGHTEYQPLIASFWRRLAA
Ga0307408_1006390922	3300031548	Rhizosphere	MTCEQCHALMIERLPARENQDSDKEQAIVLECPQCGHTEYQPLITSFWRRLAA
Ga0310886_106978031	3300031562	Soil	MIERPATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA
Ga0310813_100114309	3300031716	Soil	MRCEQCHALIDDSSPIQYKEEVDDEKAVIFHCPHCGHTEYQPLIASFWRRLAA
Ga0310813_107947632	3300031716	Soil	MLCEQCHTLMIERPVTREMEDNHNEQAIVLECPQCGQTEYQPVIASFWRRLAA
Ga0310907_102192963	3300031847	Soil	PATRQMEDGGEEQVIVLECRQCGYTEDRPLIASFWRRLAA
Ga0307407_116754301	3300031903	Rhizosphere	MTCEQCHAFMIERLPAREDQDSDKEQAIVLECPQCGHTEYQPLITSFWRRLAA
Ga0310891_101131302	3300031913	Soil	MIERPITREMEDAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA
Ga0310901_101085443	3300031940	Soil	ALTVEILISREGAMLCEQCHTLMIERPITREMEGAHDEKAIVLECPQCGHTEYQPVIASFWRRLAA
Ga0310906_101925273	3300032013	Soil	MTCEQCHAIMIERCPAPENEAADGEQAIVLECPQCGHTEHQPLITSFWRRLAA
Ga0307470_109093262	3300032174	Hardwood Forest Soil	MLCEQCHTLMIERPVTREVEDAPHEQAIVLECPQCGHTEYQPVIASFWRRLAA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F089131

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences