Metagenome / Metatranscriptome Family F088690

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088690
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	80 residues
Representative Sequence	MFVIGTVTAVSGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Number of Associated Samples	88
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.13 %
% of genes near scaffold ends (potentially truncated)	61.47 %
% of genes from short scaffolds (< 2000 bps)	74.31 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.477 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (44.037 % of family members)
Environment Ontology (ENVO)	Unclassified (54.128 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (46.789 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 2.80% β-sheet: 45.79% Coil/Unstructured: 51.40%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00072	Response_reg	41.28
PF00486	Trans_reg_C	37.61
PF00672	HAMP	1.83
PF02518	HATPase_c	1.83
PF12704	MacB_PCD	1.83
PF10604	Polyketide_cyc2	0.92
PF00005	ABC_tran	0.92
PF00440	TetR_N	0.92
PF00069	Pkinase	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.67

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.48 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	63.30 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	63.30 %
Unclassified	root	N/A	27.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	16.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	8.26 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	8.26 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.52 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	8.26 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.92 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004268\|Ga0066398_10017939	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1153	Open in IMG/M
3300005537\|Ga0070730_10391460	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	900	Open in IMG/M
3300005587\|Ga0066654_10393974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	755	Open in IMG/M
3300005764\|Ga0066903_101000501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1528	Open in IMG/M
3300005764\|Ga0066903_104729874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	724	Open in IMG/M
3300005764\|Ga0066903_105852098	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	645	Open in IMG/M
3300006755\|Ga0079222_11271443	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	667	Open in IMG/M
3300006954\|Ga0079219_10076205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1556	Open in IMG/M
3300009090\|Ga0099827_10852375	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	789	Open in IMG/M
3300009137\|Ga0066709_100115089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3342	Open in IMG/M
3300009792\|Ga0126374_10474025	Not Available	895	Open in IMG/M
3300010046\|Ga0126384_10349818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1231	Open in IMG/M
3300010048\|Ga0126373_12122756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	623	Open in IMG/M
3300010360\|Ga0126372_10207176	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1640	Open in IMG/M
3300010361\|Ga0126378_11048704	Not Available	918	Open in IMG/M
3300010366\|Ga0126379_11463753	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	789	Open in IMG/M
3300010366\|Ga0126379_12246445	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300010376\|Ga0126381_100601425	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1564	Open in IMG/M
3300010376\|Ga0126381_101628427	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300010376\|Ga0126381_101872022	Not Available	866	Open in IMG/M
3300010398\|Ga0126383_10444322	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1344	Open in IMG/M
3300010398\|Ga0126383_13192424	Not Available	535	Open in IMG/M
3300012198\|Ga0137364_10075535	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2316	Open in IMG/M
3300012199\|Ga0137383_10658158	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	766	Open in IMG/M
3300012201\|Ga0137365_10226271	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1395	Open in IMG/M
3300012208\|Ga0137376_11439535	Not Available	580	Open in IMG/M
3300012285\|Ga0137370_10807848	Not Available	581	Open in IMG/M
3300012349\|Ga0137387_10008170	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6008	Open in IMG/M
3300012349\|Ga0137387_11318359	Not Available	504	Open in IMG/M
3300012357\|Ga0137384_10008821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	8137	Open in IMG/M
3300012357\|Ga0137384_11576965	Not Available	506	Open in IMG/M
3300012977\|Ga0134087_10210442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	875	Open in IMG/M
3300014150\|Ga0134081_10386600	Not Available	522	Open in IMG/M
3300016270\|Ga0182036_11705015	Not Available	532	Open in IMG/M
3300016319\|Ga0182033_10578786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	973	Open in IMG/M
3300016341\|Ga0182035_11706561	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300018433\|Ga0066667_10031627	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2983	Open in IMG/M
3300018482\|Ga0066669_10698978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	893	Open in IMG/M
3300025898\|Ga0207692_11120229	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300027775\|Ga0209177_10147077	Not Available	796	Open in IMG/M
3300027857\|Ga0209166_10281585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	877	Open in IMG/M
3300027882\|Ga0209590_10388702	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	901	Open in IMG/M
3300030813\|Ga0265750_1035846	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	701	Open in IMG/M
3300031543\|Ga0318516_10218695	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1101	Open in IMG/M
3300031546\|Ga0318538_10201077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1064	Open in IMG/M
3300031564\|Ga0318573_10493071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300031640\|Ga0318555_10240118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	978	Open in IMG/M
3300031668\|Ga0318542_10468305	All Organisms → cellular organisms → Bacteria	654	Open in IMG/M
3300031679\|Ga0318561_10165374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1192	Open in IMG/M
3300031680\|Ga0318574_10352768	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	858	Open in IMG/M
3300031681\|Ga0318572_10196213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1177	Open in IMG/M
3300031682\|Ga0318560_10513100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	649	Open in IMG/M
3300031719\|Ga0306917_11035843	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	640	Open in IMG/M
3300031723\|Ga0318493_10895192	Not Available	502	Open in IMG/M
3300031736\|Ga0318501_10193374	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1062	Open in IMG/M
3300031751\|Ga0318494_10234779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1049	Open in IMG/M
3300031765\|Ga0318554_10257314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	994	Open in IMG/M
3300031770\|Ga0318521_10074954	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300031771\|Ga0318546_10345844	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1034	Open in IMG/M
3300031777\|Ga0318543_10381696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	631	Open in IMG/M
3300031778\|Ga0318498_10121196	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1189	Open in IMG/M
3300031779\|Ga0318566_10456962	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	627	Open in IMG/M
3300031805\|Ga0318497_10620967	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300031819\|Ga0318568_10015071	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4084	Open in IMG/M
3300031831\|Ga0318564_10003950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5376	Open in IMG/M
3300031835\|Ga0318517_10124706	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1141	Open in IMG/M
3300031845\|Ga0318511_10104786	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1206	Open in IMG/M
3300031846\|Ga0318512_10399145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	691	Open in IMG/M
3300031860\|Ga0318495_10023619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2651	Open in IMG/M
3300031860\|Ga0318495_10303833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	710	Open in IMG/M
3300031890\|Ga0306925_11928532	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300031912\|Ga0306921_11332855	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	792	Open in IMG/M
3300031912\|Ga0306921_12552521	Not Available	529	Open in IMG/M
3300031946\|Ga0310910_10232735	All Organisms → cellular organisms → Bacteria	1437	Open in IMG/M
3300032009\|Ga0318563_10008943	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4631	Open in IMG/M
3300032009\|Ga0318563_10173402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1160	Open in IMG/M
3300032010\|Ga0318569_10118620	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300032025\|Ga0318507_10065407	All Organisms → cellular organisms → Bacteria	1464	Open in IMG/M
3300032025\|Ga0318507_10231514	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	800	Open in IMG/M
3300032044\|Ga0318558_10362022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	720	Open in IMG/M
3300032044\|Ga0318558_10445253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300032052\|Ga0318506_10524419	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	525	Open in IMG/M
3300032063\|Ga0318504_10148923	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1077	Open in IMG/M
3300032064\|Ga0318510_10501132	Not Available	526	Open in IMG/M
3300032066\|Ga0318514_10004698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5422	Open in IMG/M
3300032066\|Ga0318514_10299997	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	849	Open in IMG/M
3300032067\|Ga0318524_10044410	All Organisms → cellular organisms → Bacteria	2098	Open in IMG/M
3300032068\|Ga0318553_10191802	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1065	Open in IMG/M
3300032076\|Ga0306924_11568609	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	695	Open in IMG/M
3300032089\|Ga0318525_10202869	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1019	Open in IMG/M
3300032261\|Ga0306920_101583594	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	932	Open in IMG/M
3300032895\|Ga0335074_10885884	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	812	Open in IMG/M
3300033289\|Ga0310914_10115273	All Organisms → cellular organisms → Bacteria	2331	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	100.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.99%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.75%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	54.13%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.44%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.75%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	44.04%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	12.84%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.09%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	4.59%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.75%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.92%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001175	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_O3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012977	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300014150	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017975	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300025898	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027857	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032089	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032895	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.3	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12649J13570_10329981	3300001175	Forest Soil	GSSGGTIPGGSGAVGEMFVAGPVTAVSSTSITIGGPNHTVTAAITSSTRITGKVTSIGGIKVGDQVSAQITESNGGQPTVAAIQDPAQAPSGGSVP*
JGIcombinedJ26739_1009711792	3300002245	Forest Soil	SGGPGGGPGGTANLFMIGKVTAVTSTSITIGGPGHSIVAAVTGDTRVTGKVSSIGGVKVGDQVSAQMTQSGGKTTVTAIQDPAQSPPGGGLP*
Ga0066398_100179392	3300004268	Tropical Forest Soil	GSLFLIGKVTGVSRTSITIGGPGRTVTAAVTGATRVTGKVSTITEIKVGDQVSAQITQGSSGNVAVAIADPAQLPGGGSLP*
Ga0070730_103914602	3300005537	Surface Soil	MFVIGTVTAVRRASVTIGGPGHTVTATVTSGTRFTGKVTGLGGIKVGDQVSAQLTRRGGQVTAVMIGDPAQAPGGGSVP*
Ga0066654_103939741	3300005587	Soil	PPGSGALPGGGGPGASMFVIGTVTAVNRTSITIGGPGHTITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP*
Ga0066903_1010005011	3300005764	Tropical Forest Soil	VFVIGTVTAVNGRSITIGGPGHTITATVTSATRVTGKVGGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP*
Ga0066903_1047298742	3300005764	Tropical Forest Soil	MFVIGPVTAVSDTSITIRGPGHTVTAVVTGATRVTGKRAGIGGIKVGDQVSAQLTQGNGRATAAAIADPAQPPAGASLP*
Ga0066903_1058520981	3300005764	Tropical Forest Soil	GAVPGGGQGAGPGQAGSLFLIGKVTGVSRTSITIGGPGRTVTAAVTGATRVTGKVSTITEIKVGDQVSAQITQGSSGNVAVAIADPAQLPGGGSLP*
Ga0066903_1062491702	3300005764	Tropical Forest Soil	GALPGTGSGGTGTLFVIGQVTAVSGTSITVGGPGHTVTAAVTRSTRVTGKVSGISGIKVGDHVSAQIVQNGGAARATAIQDPAQPLAGGTAP*
Ga0070766_101798303	3300005921	Soil	GTAPGGGAVGEMFVAGPVTAVSSTSITIGGPNHTVTAAITSSTRITGKVTSIGGIKVGDQVSAQVTESNGGQPTVTAIQDPAQAPSGGGLP*
Ga0079222_112714433	3300006755	Agricultural Soil	MFVIGTVTAVSRTSITIGGLGHTVTATITGATRVTGKAAGLGGIKVGDHVSAQLTQDGGRVTAVTIADPAQAPAGGSLP*
Ga0079219_100762053	3300006954	Agricultural Soil	MFVIGTVTAVSRTSITIGGLGHTVTATITGATRVTGKAAGLGGIKVGDHVSGQLTQDGGRVTAVTIADPAQAPAGGSLP*
Ga0099827_108523751	3300009090	Vadose Zone Soil	TQPGGGTGPVGSMVVIGTVTAVSRTSITIGGPGHTITAAVTSATHITGKVTSLGGIKVGDHVSAQLTRGSGGVTAVMIADPAQSPSGGGLP*
Ga0066709_1001150891	3300009137	Grasslands Soil	MFVIGTVTAVNGTSITIGGPGHSITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP*
Ga0126374_104740251	3300009792	Tropical Forest Soil	MFVIGTVTAVSGTSITIGGQGHTITATVTSATRVTGKAAGLSGIKVGDQVSAQLTQGGGGPVTAVTIADPAQAPAGGSLP*
Ga0126384_103498182	3300010046	Tropical Forest Soil	GSLFLIGKVTAVSRTSVTIGGPGHTVTAAVTGATRVTGKVSAITGIKVGDRVSAQITQGGIGNVAVAIADPA*
Ga0126384_112183431	3300010046	Tropical Forest Soil	TAVSGTSITVGGPGHTVTAAVIRSTRVTGKVSGISGIKVGDHVSAQIVQNGGAARATAIQDPAQPLAGGTAP*
Ga0126373_121227562	3300010048	Tropical Forest Soil	MFVIGTVTAVSGTSITIGGPGHTITATVTSATRVTGKVADLGGIKVGDQVSAQLTQGGGRVTAVTIADPAQAPAGGSLP*
Ga0126376_117347731	3300010359	Tropical Forest Soil	VSSTSITVGGPGHTVTATVTGSTRITGKVSGISGIKAGDQVSAQIVQNGGAARATAIQDPARPPAGGTLP*
Ga0126372_102071763	3300010360	Tropical Forest Soil	MFVIGTVTAVSGTSITIGGQGHTITATVTSATRVTGKVADLGGIKVGDQVSAQLTQGGGRVTAVTIADPAQAPAGRSLP*
Ga0126378_110487041	3300010361	Tropical Forest Soil	MFVIGTVTAVSGTSITIGGQGHTITVTVTSATRVTGKAAGLNGIKAGDQVSAQLTQGGGRVTAVTVADPAQAPVGGSLP*
Ga0126379_114637532	3300010366	Tropical Forest Soil	LIGKVITVSPTSITIGGPGHTITARVTPATRVTGSAGSITGVKAGDRVSAQINDSGGTPTAVAISDPAQPPAGGSLP*
Ga0126379_122464452	3300010366	Tropical Forest Soil	MFVIGTVTAVSGTSITIGGQGHTITATVTSATQVTGNVAGLSGIKVGDQVSAQLTQGGGRVTAVTIADPAQAPAGGSLP*
Ga0126381_1006014252	3300010376	Tropical Forest Soil	MFVIGTVTAVSGTSITIGGQGHTITATVTSATRVTGKVAGLSGIKVGDQVSAQLTQGGGRVTAVTIADPAQAPAGGSLP*
Ga0126381_1016284272	3300010376	Tropical Forest Soil	MFLIGTVTAVSRTSITIGGPGHTFTAAITGATRVTGKVSAVTGIKVGDRVSAQITRSGAGNVAVSIADPAQLPAGGSLP*
Ga0126381_1018720221	3300010376	Tropical Forest Soil	MFVIGTVTAVSGTSITIGGPGHTITATVTSATRVTGKVAGLGEIKVGDHVSAQLTQDGGRITAVAVADPAQAPAGGSLP*
Ga0126383_104443221	3300010398	Tropical Forest Soil	LPGGTLPGGSGTGMFVIGTVTAVNGRSITIGGPGHTITATVTSATRVTGNVAGLSGIKVGDQVSAQLTQGGGRVTAVTIADPAQAPAGGSLP*
Ga0126383_131924241	3300010398	Tropical Forest Soil	LFVIGTVTAVSRTSITIGGPGHTVTAAVTSATRVTGKASSATGIKAGDQVSAQITQGSTGNVAVAIADPAQPPVGASLP*
Ga0137392_100187896	3300011269	Vadose Zone Soil	ANLFIIGKVTAVTSTSITIGGPGHSIVAAVTGDTRVTGKVSSIGGVKVGDQVSAQMTQSGGKTTVTAIQDPAQSPPGGGLP*
Ga0137364_100755352	3300012198	Vadose Zone Soil	MFVIGTVTAVNRTSITIGGPGHTITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP*
Ga0137383_106581582	3300012199	Vadose Zone Soil	TVTAVSRTSITIGGPGHTITAAVISATHITGKVTSLGGIKVGDHVSAQLTQGSGGVTAVMIADPAQSPSGGSLP*
Ga0137365_102262713	3300012201	Vadose Zone Soil	MARAGRAGEGSDVTAINGPGHTITAAVTSASHITGKVTSVGGIKVGDHVTAQLTRGSGGVTAVMIADPAQSPSGGSLP*
Ga0137376_114395351	3300012208	Vadose Zone Soil	MFVIGPVTAVNRTSITIGGPGHTITATVTSATRVTGKVAGLGGIKIGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP*
Ga0137370_108078481	3300012285	Vadose Zone Soil	MFVIGPVTAVNRTSITIGGPGHTITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP*
Ga0137387_100081701	3300012349	Vadose Zone Soil	MVVIGTVTAVSRTSITIGGPGHTITAAVTSATHITGKVTSVGGIKAGDHVSAQLTQGSGGVIAVMIADPAQSPPGGSLP*
Ga0137387_113183592	3300012349	Vadose Zone Soil	MVVIGTVTAVSRTSITIGGPGHTITAAVTSATHITGKVTSLGGIKVGDHVSAQLTQGSGGVTAVMIADPAQSPSGGSLP*
Ga0137384_100088218	3300012357	Vadose Zone Soil	VIGTVTAVSRTSITIGGPGHTITAAVTSAAHITGKVTSLGGIKVGDHVSAQLTQGSGGVTAVMIADPAQSPYGGSLP*
Ga0137384_115769651	3300012357	Vadose Zone Soil	MVVIGTVTAVSRTSITIGGPGHTITAAVTSATHITGKVTSVGGIKAGDHVSAQLTQGSGEVIAVMIADPAQSPPGGSLP*
Ga0134087_102104422	3300012977	Grasslands Soil	AVNGTSITIGGPGHSITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP*
Ga0134081_103866001	3300014150	Grasslands Soil	MFVIGTVAAVNRTSITIGGRGDTITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPALAPAGGSLP*
Ga0182036_117050152	3300016270	Soil	TGTLFAIGKVTAVSGTSITVGGPGHTVTAAVTGSTRITGTVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPAGGSLP
Ga0182033_105787861	3300016319	Soil	TSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0182035_117065612	3300016341	Soil	GAGLGRAGSLFLIGTVTAVSRTSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0182039_104016451	3300016422	Soil	PGGGALPGTGSGGTGTLFAIGKVTTVSGTSITIGGPGHTVTATVTGSTRITGKVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPARGTLP
Ga0187782_108087292	3300017975	Tropical Peatland	GTQPSAVAPGISGGGAVPGDGGAVAEMFVAGPVTAVSSTSITIGGPGRTVTAAITSSTRITGKVTSIGAIKVGDQVSAQITQRNGGQPTVTAIQDPAQAPSTGTVP
Ga0066667_100316272	3300018433	Grasslands Soil	MFVIGTVTAVNGTSITIGGPGHSITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADLAQAPAGGSLP
Ga0066669_106989781	3300018482	Grasslands Soil	LPGGGGPGASMFVIGTVTAVNRTSITIGGPGHTITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIAAPRQAPAGGSLP
Ga0207692_111202291	3300025898	Corn, Switchgrass And Miscanthus Rhizosphere	VTAVSRTSITIGGPGHTITARVTSATRVTGKVAGLGGIKIGDHVSAQLIQDGGQVTAVTIADPAQAPAGGGLP
Ga0209177_101470772	3300027775	Agricultural Soil	MFVIGTVTAVSRTSITIGGLGHTVTATITGATRVTGKAAGLGGIKVGDHVSGQLTQDGGRVTAVTIADPAQAAAGGSLP
Ga0209166_102815852	3300027857	Surface Soil	MFVIGTVTAVRRASVTIGGPGHTVTATVTSGTRFTGKVTGLGGIKVGDQVSAQLTRRGGQVTAVMIGDPAQAPGGGSVP
Ga0209590_103887021	3300027882	Vadose Zone Soil	TQPGGGTGPVGSMVVIGTVTAVSRTSITIGGPGHTITAAVTSATHITGKVTSLGGIKVGDHVSAQLTRGSGGVTAVMIADPAQSPSGGGLP
Ga0265750_10358462	3300030813	Soil	GGGTAPGGGSVEQMFVAGPVTAVSSTSITIGGPNHTVTAAITSSTRITGKVTSIGGIKVGDQVSAQITESNGGQPTVAAIQDPAQAPSGGSVP
Ga0318516_102186952	3300031543	Soil	ITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318538_102010772	3300031546	Soil	TMFVIGAVTAVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318538_102524922	3300031546	Soil	GSGGTGTLFVIGKVTAVSGTSITVGGPGHTVTAGVTGSTRITGTVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPARGTLP
Ga0318573_104930712	3300031564	Soil	IGGLGHTITATVTGATRVSGKVAGLGGIKVGDQVSAQLTQDGGRIIAVAIADPAQAPAGVTLP
Ga0318555_102401182	3300031640	Soil	MFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318542_104683052	3300031668	Soil	VSRTSITVGGPEHTVTAAVTGATRVTGKVSAVTGIKVGDRVSEQITYGGTGNVAVAIADPAQQPAEGSLP
Ga0318561_101653743	3300031679	Soil	FVIGTVTAVSGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQSPAGGSLP
Ga0318574_103527682	3300031680	Soil	SITIGGPGHTITAAVTSATRVTGNVAGLGGIKVGDQVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0318572_101962131	3300031681	Soil	GSARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318560_105131001	3300031682	Soil	IGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0306917_110358431	3300031719	Soil	GSGAGSARTMFVIGTVTAVSGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318493_108951921	3300031723	Soil	GTVTAVSGTSITIGGPGHTITAAVTSATRVTGNVAGLGGIKVGDQVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0318501_101933742	3300031736	Soil	GGAGSARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318501_107265282	3300031736	Soil	KARMALIGTVTAVSSRSISIGGLGPAVTAEVTGSTRVTGKVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPAGGTLP
Ga0318494_102347792	3300031751	Soil	AGLGRAGSLFLIGTVTAVSRTSITVGGPEHTVTAAVTGATRVTGKVSAVTGIKVGDRVSEQITYGGTGNVAVAIADPAQQPADGSLP
Ga0318554_102573141	3300031765	Soil	PGGAQGGPGSGMFVIGTVTAVGGSSITIGGLGHTITATVTGATRVSGKVAGLGGIKVGDQVSAQLTQDGGRIIAVAIADPAQAPAGVTLP
Ga0318521_100749543	3300031770	Soil	PARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318546_103458442	3300031771	Soil	GIFVIGTVTAVSGTSITIGGPGHTITAAVTSATRVTGNVAGLGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318543_103816961	3300031777	Soil	FLIGTVTAVSRTSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0318498_101211961	3300031778	Soil	VRAGSARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318566_104569622	3300031779	Soil	MFVIGTVTAVSGTSITIGGPGHTITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0318497_106209672	3300031805	Soil	AGPGQAGSLFLIGTVTAVSRTSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0318568_100150715	3300031819	Soil	FVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318564_100039501	3300031831	Soil	ARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318517_101247061	3300031835	Soil	MFVIGAVTAVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318511_101047861	3300031845	Soil	GSGGTGTLFAIGKVTTVSGTSITIGGPGHTVTATVTGSTRITGKVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPAGGSLP
Ga0318511_101504381	3300031845	Soil	PGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318512_103991452	3300031846	Soil	GMFVIGTVTAVSGTSITIGGPGHTITAAVTSATRVTGNVAGLGGIKVGDQVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0318495_100236193	3300031860	Soil	GRHRAGGGTGSARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318495_103038332	3300031860	Soil	SGTGMFVIGTVTAVSGTSITIGGPGHTITAAVTSATRVTGNVAGLGGIKVGDQVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0306925_119285322	3300031890	Soil	GTGPGGGAGSARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0306921_113328551	3300031912	Soil	PGGGTGAGPGQAGSLFLIGTVTAVSRTSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0306921_125525212	3300031912	Soil	APPAGALPGGGSGTGMFVIGTVTAVSGTSITIGGPGHTITATVTSATRVTGKVAGLGGIKVGDHVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0310910_102327353	3300031946	Soil	AVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318563_100089435	3300032009	Soil	GPGGGAGSARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318563_101734023	3300032009	Soil	ATAVSRTSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0318569_101186203	3300032010	Soil	MFVIGTVTAVSGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318507_100654071	3300032025	Soil	TEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318507_102315141	3300032025	Soil	MFVIGTVTAVSGTSITIGGPGHTITAAVTSATRVTGNVAGLGGIKVGDQVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0318549_101771882	3300032041	Soil	GHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318558_103620222	3300032044	Soil	VTAVSRTSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGSLP
Ga0318558_104452531	3300032044	Soil	TAVSGTSITIGGPGHTITATVTSATRVTGKVAGLGGIKVGDQVSAQLTQDGGRIIAVAIADPAQAPAGVTLP
Ga0318506_105244192	3300032052	Soil	VIGKVTAVSGTSITVGGPGHTVKAAVTGSTRITGTVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPAGGTLP
Ga0318504_101489232	3300032063	Soil	GTGTLFVIGRVTAVSGTSITVGGPGHTVTAGVTGSTRITGTVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPAGGSLP
Ga0318510_105011321	3300032064	Soil	TLPGGALGGPGSGMFVLGTVTAVSGSSITIGGPGHTITATVTSGTRVTGKVTGLGGIKVGDQVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0318514_100046981	3300032066	Soil	GAGSARTMFVIGTVTAVSGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318514_102999971	3300032066	Soil	TSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0318524_100444101	3300032067	Soil	TGPGGGAGSARTMFVIGAVTEVTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0318553_101918022	3300032068	Soil	SRTSITVGGPEHTVTATVTGATRVTGKVSAVTGIKVGDRVSAQITHGGTGNVAVAIADPAQLPADGSLP
Ga0306924_115686092	3300032076	Soil	GPGQAGSLFLIGTVTAVSRTSITIGGPGHTITAAVTGATRVTGKVSAVTGIKVGDRVSAQITRGGTGNVAVAIADPAQPPSGGGLP
Ga0318525_102028691	3300032089	Soil	IGTVTAVSGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0306920_1014582972	3300032261	Soil	IGGPGHTITATVTGATRVTGKVTGLGGIKVGDQVSAQLTQDGGRVTAVAIADPAQAPAGGSLP
Ga0306920_1015835942	3300032261	Soil	VTAVSGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0335074_108858842	3300032895	Soil	GGAVGEMFVAGPVTAVSGTSITIGGPGHTVTAAITSATRITGKVTSIGAIKVGDQVSAQITQASGGQPTAAAIQDPAQAPSGGSLP
Ga0335072_113563562	3300032898	Soil	TSITIGGPGHTVTAAITSATRITGKVTSIGAIKVGDQVSAQITQASGGQPTAAAIQDPAQAPSGGSLP
Ga0310914_101152733	3300033289	Soil	VTGTSITIGGPGHTVTAAVTGATRVTGKVAGIGGIKVGDQVSAQLTQDNGGTIAVAIADPAQLPAGGSLP
Ga0310914_111964582	3300033289	Soil	TSITIGGPGHTVTAAVTGSTRITGKVSGISGIKVGDQVSAQIVQNGGAARASAIQDPAQPPAGGSLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088690

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences