Metagenome Family F088652

Basic Information
Family ID	F088652
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	57 residues
Representative Sequence	MKFLRSIVAVCALAVLAAPHTAPAATTLSQLRGIQELKSWFNTFNGHPRLIFLLSPT
Number of Associated Samples	82
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (27.523 % of family members)
Environment Ontology (ENVO)	Unclassified (31.193 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (66.055 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 41.18% β-sheet: 0.00% Coil/Unstructured: 58.82%
Feature Viewer

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Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00939	Na_sulph_symp	67.89
PF00005	ABC_tran	2.75
PF13520	AA_permease_2	1.83
PF13545	HTH_Crp_2	0.92
PF07238	PilZ	0.92
PF04193	PQ-loop	0.92
PF01717	Meth_synt_2	0.92
PF00589	Phage_integrase	0.92
PF07681	DoxX	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG0471	Di- and tricarboxylate antiporter	Carbohydrate transport and metabolism [G]	67.89
COG1055	Na+/H+ antiporter NhaD or related arsenite permease	Inorganic ion transport and metabolism [P]	67.89
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	0.92
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.92
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.92

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	74.31%
Host-Associated	Host-Associated	25.69%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	71.56%
Plants	Host-Associated → Plants	25.69%
Aquatic	Environmental → Aquatic	2.75%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	71.56%
Rhizosphere	Host-Associated → Plants → Rhizosphere	22.94%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.75%
Freshwater	Environmental → Aquatic → Freshwater	1.83%
Sediment	Environmental → Aquatic → Sediment	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	22.94%
Loam	Environmental → Terrestrial → Soil → Loam	12.84%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.78%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	22.94%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	15.60%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	11.93%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	3.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.75%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	27.52%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	20.18%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	11.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	11.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	4.59%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	4.59%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	2.75%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	1.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005166	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_123	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005558	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006791	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012201	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_40_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012354	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_60_16 metaG	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012532	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_80_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300017659	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021080	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60_coex redo	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025934	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026323	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130 (SPAdes)	Environmental	Open in IMG/M
3300026536	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147 (SPAdes)	Environmental	Open in IMG/M
3300026537	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135 (SPAdes)	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300028884	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062589_1002759292	3300004156	Soil	MMKWLRAMVVLVALAVAAVPRAAPAAPTLSQLRGIQELKSWFNAFKGHPRLIFLLSPT*
Ga0062595_1014138421	3300004479	Soil	MKALRSIVAMVALAVLAVPHAAPAGTTLSQLRGMQELKSWFNTFNGHPRLILLLSPT*
Ga0062591_1021250302	3300004643	Soil	MKSLRSIVAMVALAVLAVPHAAPAGTTLSQLRGMQELKSWFNTFNGHPRLILLLSPT*
Ga0066674_101380522	3300005166	Soil	MKAIRSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0066678_105021782	3300005181	Soil	MIAVLALAVLAAPNVAPAAETLSQLRGVEELKNWFNTFKGHPRLILLLSPT*
Ga0065707_101553862	3300005295	Switchgrass Rhizosphere	VKFLRSIVALAALAVLAVPHAAPAASTLSQLRGMQELKSWFNTFNGHPRLILLLSPT*
Ga0070705_1001076022	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	MKAIRSIVAVLALAMLAVPPAAPAAPTLSQLRGMQELKGWFNTFNGHPRLILLLSPT*
Ga0070708_1007240892	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKFLRSIVAVCALAVLAAPHTAPAATTLSQLRGIQELKSWFNTFNGHPRLIFLLSPT*
Ga0070708_1010492351	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MVQAGVKPMKFVRSMIAVLALAVLAAPKEAPAAETLSQLRGVAELKNWFNTFRGHPRLILLLSPT*
Ga0070708_1013269932	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MKSMRSIVAMLALAICAAEPATPASALSQLRGMQELKSWFNTFNGHPRLILLLSPT*
Ga0066686_101741462	3300005446	Soil	MKFVRSMIAVLALAVLAAPKVAPAAETLSRLRGVDELKNWFNTFRGHPRLIMLLSPT*
Ga0070707_1003654532	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLRSIVAVCALAVLAAPRTAPAATTLSQLRGIQELKSWFNTFN
Ga0070707_1005740312	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MVQAGVAPMKFVRSMIAVLALAVLAAPRVVPAAQTLSQLRGVDELKTWFNTFRGHPRLILLLSPT*
Ga0070707_1018512352	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MKSIRAVVVMLALAVWAMPNAARAASTLAQLRGVDELKSWFNSYQGHPRLIFLVSPT*
Ga0070698_1020352501	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MKSMRSIVAMLALAVCAAEPATPASALSQLRGMQELKSWFNTFNGHPRLILLLSPT*
Ga0070699_1002544702	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLRSIVAVCALAVLAAPRTAPAATTLSQLRGIQELKSWFNTLNGHPRLIFLLSPT*
Ga0070697_1001467431	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLRSIVAVWALAVLAAPRTAPAATTLSQLRGIQELKSWFNTFNGHPRLIFLLSPT*
Ga0070696_1008250261	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	MKSMRSIVVLFALAALAAAHPAPAASTLSQLRGMQELKSWFNTFNGHPRLILLLSPT*
Ga0066698_102392792	3300005558	Soil	MVQAGVETMKFVRSMIAVLALAVLAAPKVAPAAETLSRLRGVDELKNWFNTFRGHPRLIMLLSPT*
Ga0066698_103949351	3300005558	Soil	SIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0066706_103490721	3300005598	Soil	MKSIRAVVAVLALAVFAPAHAAPPARELPQLGGVQELKSWFNTFNGRPRLIFLLSPT*
Ga0066905_1012615202	3300005713	Tropical Forest Soil	MKLIRSMVAVLALAVLATPNVAPAAETLSQLRGVDELKSWFNTLKGHPRLILLLSPT*
Ga0068861_1008589922	3300005719	Switchgrass Rhizosphere	MKSIRSIVAVVAFVVLAVPHAVPAASPLSRLRGVPELKDWFNTFKGHPRLILLLSPT*
Ga0066652_1000302403	3300006046	Soil	MKAIRSIVAVLALAVLALPHPAPASSTLSQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0075417_102388092	3300006049	Populus Rhizosphere	MIRVKVEPMKCIRSIVAVLALAVLAAPNVAPAAETLSQLRGIEELKSWFNTFKGHPRLIFLVSPT*
Ga0066653_103632922	3300006791	Soil	KAIRSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0075428_1003008752	3300006844	Populus Rhizosphere	MVQVRVEPMKFIRSMVAVVALAVLSAPNVAPAAETLSQLRGVEELKNWFNTFRGHPRLILLLSPT*
Ga0075428_1016857422	3300006844	Populus Rhizosphere	MKLIRSMVAVLALAVLATPNVAPAAETLSQLRGVDELKSWFNTFKGHPRLILLLSPT*
Ga0075430_1009066871	3300006846	Populus Rhizosphere	AAARAVLLAADRARAVMVQVRVEPMKFIRSMVAVVALAVLSAPNVAPAAETLSQLRGVEELKNWFNTFRGHPRLILLLSPT*
Ga0075434_1005983724	3300006871	Populus Rhizosphere	MKSLRAFVVLLAAAVCGLPEAAPAASSLRQLQGVDELKSWFNGYQGHPRLIFLVSPT*
Ga0075434_1006998432	3300006871	Populus Rhizosphere	MKVLRSIVAVCALAVLAAPRPAPAATTLSQLRGIQELKSWFNTFNGHPRLIFLLSPT*
Ga0075434_1007849132	3300006871	Populus Rhizosphere	MKSIRAVVVMLALAVCALPDAVPAASTPFGSHASAALAQGKLSQLRGIDELRSWFNGYQG
Ga0075429_1014276911	3300006880	Populus Rhizosphere	MTPMKSIRAVVVMLALAVCALPDAVPAASTLLQLRGIDELKSWFNGYRGHPRLIFLVSPT
Ga0075426_100075475	3300006903	Populus Rhizosphere	VRFLRAALVSVGLAVVALSGSLPAASELSQLRGLDELKSWFNSYKGHPRLLFLVSPT*
Ga0075426_106585422	3300006903	Populus Rhizosphere	MKFVRSMVAVAALAVLATPNIAPAAETLSQLRGIEELKSWFNTFRG
Ga0099791_102293902	3300007255	Vadose Zone Soil	MKFLRSIVAVCALAVLAAPHAAPAATTLSQLRGIQELKSWFNTFNGHTRLIFLLSPT*
Ga0099793_102038291	3300007258	Vadose Zone Soil	MKFLRAIVAVCALAVLAAPHAAPAATTLSQLRGIQELKSWFNT
Ga0066710_1006364023	3300009012	Grasslands Soil	METMKFVRSMIAVLALAVLAAPKVAPAAETLSRLRGVDELKNWFNTFRGHPRLIMLLSPT
Ga0066710_1046325232	3300009012	Grasslands Soil	MKSIRAVVAVLALAVFAPAHAAPPARELPQLGGVQELKRWFNTFNGRPRLIFLLSPT
Ga0099829_103357582	3300009038	Vadose Zone Soil	MKTIRTLVAVLALAVMAAPGVAPAAPTLSQLRGIEELKSWFNTFKGHPRLIFLVSPT*
Ga0099830_101383702	3300009088	Vadose Zone Soil	MKSMRSIVAVLALAVCAAEPAAPASALSQLRGMQELKSWFNTFNGHPRLILLLSPT*
Ga0099828_102417022	3300009089	Vadose Zone Soil	MKSMRSIVAMLALAVCAAEPAAPASALSQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0099827_100059844	3300009090	Vadose Zone Soil	MKFLRSIVAVCALAVLAAPHTAPAATTLSQLRGIQELKSWFNTFNGHTRLIFLLSPT*
Ga0099827_106074681	3300009090	Vadose Zone Soil	QMRVMRSVVVMLALAVLAVPAVAPAAPPLSQLRGIDDLKSWFNTFNGHPRLIFLVSPT*
Ga0111539_101783392	3300009094	Populus Rhizosphere	VKSLRAFVVLLAVAVCALPEAAPAASRLRQLQGVDELKSWFNGYQGHPRLIFLVSPT*
Ga0111539_111293271	3300009094	Populus Rhizosphere	MKLIRSMVAVLALAVLATPNVAPAAETLSQLRGVDELKSWFNTFKGHPRLILLLSP
Ga0111539_112224862	3300009094	Populus Rhizosphere	MKSIRAVVVMLALAVCALADAVPAASTLSQLRGIDELKSWFNGYRGHPRLIFLVSPT*
Ga0075418_109939332	3300009100	Populus Rhizosphere	MKFIRSMVMVLALAMLAAPNVAPAAETLSQLRGVEELKNWFNTFRGHPRLILLLSPT*
Ga0066709_1007766413	3300009137	Grasslands Soil	MKSIRAVVAVLALAVFAPAHAAPPARELPQLGGVQELKRWFNTFNGHPRLIFLLSPT*
Ga0114129_103132583	3300009147	Populus Rhizosphere	MIQAGEEPMKVIRSLVAVFALAVLAAPKVAPAAETLSQLRGVDELKNWFNTFKGHPRLILLLSPT*
Ga0114129_114704812	3300009147	Populus Rhizosphere	MKSIRAVVVMLALAVCALPDAVPAASTLSQLRGIDELKSWFNGYRGHPRLIFLVSPT*
Ga0075423_100380084	3300009162	Populus Rhizosphere	MKLIRSMVAVLALAVLAAPNVAPAAETLSQLRGVDELKSWFNTFKGHPRLILLLSPT*
Ga0075423_109380652	3300009162	Populus Rhizosphere	MVQAGVAPMKFIRSMIAVLALAVLAAPRVAPAAQTLSQLRGVDELKTWFNTFRGHPRLILLLSPT*
Ga0075423_109454703	3300009162	Populus Rhizosphere	MKSIRAVVVMLALAACALPDAVPAASTLSQLRGIDELKSWFNGYRGHPRLIFLVSPT*
Ga0075423_110089372	3300009162	Populus Rhizosphere	MKSLRAFVVLLAVVVCALPEAAPAASRLRQLQGVDELKSWFNGYQGHPRLIFLVSPT*
Ga0105242_117304232	3300009176	Miscanthus Rhizosphere	MTAIRSIVAVLALAMLAVPPAAPAAPTLSQLRGMQELKGWFNTFNG
Ga0105249_121784572	3300009553	Switchgrass Rhizosphere	MKSIRSIVAVVAFVVPAVPHAVPAASPLSRLRGVPELKDWFNTFKGHPRLILLLSPT*
Ga0134071_106787982	3300010336	Grasslands Soil	VFWVEHMKAIRSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0137391_107912922	3300011270	Vadose Zone Soil	MKVIRSIVAVFALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0137389_111032131	3300012096	Vadose Zone Soil	MKSMRSIVAMLALAICAAEPATPASALSQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0137389_115175692	3300012096	Vadose Zone Soil	MKSIRAVAAVLALAVFAPAHAAPPARELRQLGGVQALKSWFNTFNGHPRLIFLLSPT*
Ga0137365_101746483	3300012201	Vadose Zone Soil	SLVAVVALTVLVAPGVAPAAPALSQLGGIDELKGWFNTFKGHPRLIFLVSPT*
Ga0137399_102813642	3300012203	Vadose Zone Soil	MKFLRSIVAVCALAVLAAPHAAPAATTLSQLRGVQELKSWFNTFNGHTRLIFLLSPT*
Ga0137399_117594242	3300012203	Vadose Zone Soil	MKAIRSIVVVFALAILAVPHAMPAAAGLSQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0137374_101253581	3300012204	Vadose Zone Soil	MRSIRALVALFALAVLAAPHDAPAASGLSELRGIQEVKGWFN
Ga0137380_100938624	3300012206	Vadose Zone Soil	MKLIRSIVAVFALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT*
Ga0137376_113825892	3300012208	Vadose Zone Soil	MRAIRSVVVVFALAVCAVPQPAPAASTLSQLRGMQELKSWFN
Ga0137387_101881101	3300012349	Vadose Zone Soil	MEPTQMKAIRSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFN
Ga0137387_105528901	3300012349	Vadose Zone Soil	MKAIRSIVAIVAVFALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLFFLVSPT
Ga0137366_112077472	3300012354	Vadose Zone Soil	MKFIRSLVAVVALTVLVAPGVAPAAPALSQLGGIDELKGWFNTFKGHPRLIFLVSPT*
Ga0137371_105178911	3300012356	Vadose Zone Soil	MKFIRSLVAVIALTVLVAPGVAPAAPALGQLRGIDELKNWFNTNNGHPRLILLVSPT*
Ga0137371_107776792	3300012356	Vadose Zone Soil	MKSMRSIVAVLAIAMLAAPHASPAASTLSQLRGIPELKNWFNTFKGHPRLIFLLSPT*
Ga0137375_101068073	3300012360	Vadose Zone Soil	MKRIRSVVAVLALAVLMAPGAAPAASTLAQLRGIEELKSWFNTYKGHPRLILLVSPT*
Ga0137375_112549991	3300012360	Vadose Zone Soil	REMRVQAGVEPMKLVRSMIAVLALAVLAAPKVAPAAETLSQLRGVDELKNWFNTFRGHPRLILLLSPT*
Ga0137373_109510732	3300012532	Vadose Zone Soil	MKFIRSMVAVVALAVLAAPTVAPAAETLSQLRGVDELKNWFNAFKGHPRLILLLSPT*
Ga0137416_101373413	3300012927	Vadose Zone Soil	MKFLRSIVAVCALAVLAAPHTAPAATTLSQLRGVQELKSWFNTFNGHTRLIFLLSPT*
Ga0126375_114983382	3300012948	Tropical Forest Soil	MKLIRSMVAVLALAVLATPNVAPAAEALSQLRGVDELKSWFNTLKGHPRLILLLSPT*
Ga0132258_106394873	3300015371	Arabidopsis Rhizosphere	MRRRDFLKSARAAVVFAAFAVIALPPVAPAASTLSRLRGIQELRSWFNANKGRPRLVLLLSPT*
Ga0134083_102878921	3300017659	Grasslands Soil	MKAIRSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFKGHPRLILLLSPT
Ga0066655_101376462	3300018431	Grasslands Soil	MKAIRSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT
Ga0066667_107761181	3300018433	Grasslands Soil	SQCSRFYVFWVEHMKAIRSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT
Ga0210381_102299472	3300021078	Groundwater Sediment	MKSLRSIAAVVALGLLALPHRAPAASALSQLRGMQELKSWFNTFNGHPRLILLLSPT
Ga0210382_104276391	3300021080	Groundwater Sediment	GKGPHMKFLRSIAAMVALALLAVPHAAPAGSRLPQLRGMQELKSWFNTFNGHPRLILLLSPT
Ga0210400_105645402	3300021170	Soil	MTRLRPIVAVLALALLAVPHAAPAAPVLLQLRGIQELKSWFNTFKGHPRLILLLSPT
Ga0210408_113526281	3300021178	Soil	MIRLRAIAAVLALALLAVPPAAPAAPILLQLRGVQELKSWFNTFKGHPRLILLLSPT
Ga0222622_100672702	3300022756	Groundwater Sediment	MKSLRSIVAMIALAVLAVPHAAPAGTTLSQLRGMQELKSWFNTFNGHPRLILLLSPT
Ga0207646_102313262	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKVLRSIVAVCALAVLAAPRTAPAATTLSQLRGIQELKSWFNTLNGHP
Ga0207646_113230142	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MKFVRSMIAVLALAVLAAPRVVPAAQTLSQLRGVDELKTWFNTFRGHPRLILLLSPT
Ga0207686_108840362	3300025934	Miscanthus Rhizosphere	MMKWLRAMVVLVALAVAAVPRAAPAAPTLSQLRGIQELKSWFNTFNGHPRLILLLSPT
Ga0207675_1005350642	3300026118	Switchgrass Rhizosphere	MKSIRSIVAVVAFVVLAVPHAVPAASPLSRLRGVPELKDWFNTFKGHPRLILLLSPT
Ga0209472_11763281	3300026323	Soil	MKAIRSIVAVLALAVLALPHPAPASSTLSQLRGMQELKSWFNTFNGHPRLIF
Ga0209058_11636533	3300026536	Soil	RSIVAVLALAVLALPHPAPASSTLAQLRGMQELKSWFNTFNGHPRLIFLVSPT
Ga0209157_11065792	3300026537	Soil	MVQAGVETMKFVRSMIAVLALAVLAAPKVAPAAETLSRLRGVDELKNWFNTFRGHPRLIMLLSPT
Ga0209577_104306361	3300026552	Soil	MASFRAVAAVLALALLAPPSAAPAASTLSQLRGVDELRSWFNSFNGHPRLIFLLSPT
Ga0209180_104773651	3300027846	Vadose Zone Soil	MKFLRSIVAVCALAVLAAPHAAPAATTLSQLRGIQELKSWFNT
Ga0209814_104147172	3300027873	Populus Rhizosphere	VMVLALAMLAAPNVAPAAETLSQLRGVDELKNWFNTFKGHPRLILLLSPT
Ga0209590_100183073	3300027882	Vadose Zone Soil	MKFLRSIVAVCALAVLAAPHTAPAATTLSQLRGIQELKSWFNTFNGHTRLIFLLSPT
Ga0209590_104637742	3300027882	Vadose Zone Soil	MKSIRSIVVVFALAIVAVPHAMPAAAGLSQLRGMQELKSWFNTF
Ga0209590_105052242	3300027882	Vadose Zone Soil	QMKAIRSIVVVFALAIVAVPHAMPAAAGLSQLRGMQELKSWFNTFNGHPRLIFLVSPT
Ga0207428_108651481	3300027907	Populus Rhizosphere	MKSIRAVVVMLALAVCALADAVPAASTLSQLRGIDELKSWFNGYRGHPRLIFLVSPT
Ga0137415_100024368	3300028536	Vadose Zone Soil	MKFLRSIVAVCALAVLAAPHTAPAATTLSQLRGIQELKSWFNTFNGHPRLIFLLSPT
Ga0307305_104782141	3300028807	Soil	GKGQQMKAIRSIVVVFSLAILAAPHAMPAAAGLSQLRGMQELKSWFNTFNGHPRLIFLVSPT
Ga0307277_101068002	3300028881	Soil	MKSMRSIVVLFALAALAAPHPAPAASTLSQLRGMQELKSWFNTFNGHPRLILLLSPT
Ga0307277_103402932	3300028881	Soil	MKWLRSIVAMVALAVLAVPHAAPAGTTLSQLRGMQELKSWFNTFNGHPRLILLLSPT
Ga0307308_102006522	3300028884	Soil	MKWLRSIVAMVALAVLAVPHAAPAGTPLSQLRGMQELKSWFNTFNGRPRLILLLSPT
Ga0307308_105851671	3300028884	Soil	MKAIRSIVVVFSLAILAAPHAMPAAAGLSQLRGMQELKSWFNTFNGHPRLIFLVSPT
Ga0307469_114946432	3300031720	Hardwood Forest Soil	MKSIRAFVVLLAAAVCALPEAAPAASSLRQLRGVDELKSWFNGYQGHPRLIFLVSPT
Ga0310900_108772722	3300031908	Soil	MKTLRAATVAIALAMVALPSPVPAASALAQLRGIAELKSWFNGAKGHPRLIFLLSPT
Ga0307471_1008280782	3300032180	Hardwood Forest Soil	MKFVRSMAAALALALVVALPAASPAAPALSQLRGMQELKSWFNTYNGHPRLILLLSPT

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088652

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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