Metagenome Family F088581

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088581
Family Type	Metagenome
Number of Sequences	109
Average Sequence Length	57 residues
Representative Sequence	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLP
Number of Associated Samples	83
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.19 %
% of genes near scaffold ends (potentially truncated)	91.74 %
% of genes from short scaffolds (< 2000 bps)	92.66 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (35.780 % of family members)
Environment Ontology (ENVO)	Unclassified (46.789 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (44.954 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 55.70% β-sheet: 0.00% Coil/Unstructured: 44.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF13474	SnoaL_3	22.02
PF08332	CaMKII_AD	7.34
PF13419	HAD_2	5.50
PF04784	DUF547	2.75
PF03734	YkuD	2.75
PF09594	GT87	1.83
PF00702	Hydrolase	1.83
PF00403	HMA	0.92
PF00497	SBP_bac_3	0.92
PF00581	Rhodanese	0.92
PF01909	NTP_transf_2	0.92
PF14235	DUF4337	0.92
PF03069	FmdA_AmdA	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG4875	Protein kinase association domain CaMKII_AD, NTF2-like superfamily	Posttranslational modification, protein turnover, chaperones [O]	7.34
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	2.75
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	2.75
COG2217	Cation-transporting P-type ATPase	Inorganic ion transport and metabolism [P]	0.92
COG2421	Acetamidase/formamidase	Energy production and conversion [C]	0.92
COG2608	Copper chaperone CopZ	Inorganic ion transport and metabolism [P]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	93.58 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	66.97 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	59.63 %
Unclassified	root	N/A	5.50 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	1.83 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	44.04 %
Unclassified	root	N/A	5.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
unclassified Hyphomicrobiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales	0.92 %

Name	Rank	Taxonomy	Distribution
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	19.27 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	5.50 %
Unclassified	root	N/A	5.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Rhizobiales bacterium 35-66-30	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-66-30	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.50 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	4.59 %
unclassified Afipia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Rhizobiales bacterium 35-66-30	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-66-30	0.92 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	5.50 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	4.59 %
Afipia sp. 1NLS2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. 1NLS2	1.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1.83 %
Rhizobiales bacterium 35-66-30	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-66-30	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10125364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	626	Open in IMG/M
3300000793\|AF_2010_repII_A001DRAFT_10090163	All Organisms → cellular organisms → Bacteria → Proteobacteria	650	Open in IMG/M
3300002917\|JGI25616J43925_10132218	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1008	Open in IMG/M
3300004268\|Ga0066398_10022807	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1070	Open in IMG/M
3300005332\|Ga0066388_101160797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1315	Open in IMG/M
3300005332\|Ga0066388_101461936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1192	Open in IMG/M
3300005332\|Ga0066388_106788276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	576	Open in IMG/M
3300005332\|Ga0066388_107269076	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. 1NLS2	556	Open in IMG/M
3300005434\|Ga0070709_11119165	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	630	Open in IMG/M
3300005713\|Ga0066905_101551936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	604	Open in IMG/M
3300005764\|Ga0066903_100760405	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1723	Open in IMG/M
3300005764\|Ga0066903_106211063	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300006028\|Ga0070717_11324084	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	655	Open in IMG/M
3300006797\|Ga0066659_10114190	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1861	Open in IMG/M
3300007076\|Ga0075435_100656221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	911	Open in IMG/M
3300007255\|Ga0099791_10691667	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	501	Open in IMG/M
3300009038\|Ga0099829_10334818	All Organisms → cellular organisms → Bacteria → Proteobacteria	1245	Open in IMG/M
3300009089\|Ga0099828_10873778	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	804	Open in IMG/M
3300009792\|Ga0126374_10356413	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Rhizobiales bacterium 35-66-30	1005	Open in IMG/M
3300009792\|Ga0126374_11885267	All Organisms → cellular organisms → Bacteria → Proteobacteria	502	Open in IMG/M
3300009840\|Ga0126313_10932236	Not Available	709	Open in IMG/M
3300010046\|Ga0126384_11471246	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300010047\|Ga0126382_10463591	All Organisms → cellular organisms → Bacteria → Proteobacteria	1008	Open in IMG/M
3300010047\|Ga0126382_11665903	All Organisms → cellular organisms → Bacteria → Proteobacteria	594	Open in IMG/M
3300010047\|Ga0126382_11831200	All Organisms → cellular organisms → Bacteria → Proteobacteria	572	Open in IMG/M
3300010048\|Ga0126373_10222396	Not Available	1842	Open in IMG/M
3300010048\|Ga0126373_11849512	All Organisms → cellular organisms → Bacteria → Proteobacteria	667	Open in IMG/M
3300010048\|Ga0126373_11895098	All Organisms → cellular organisms → Bacteria → Proteobacteria	659	Open in IMG/M
3300010048\|Ga0126373_12192655	All Organisms → cellular organisms → Bacteria → Proteobacteria	614	Open in IMG/M
3300010325\|Ga0134064_10142893	All Organisms → cellular organisms → Bacteria → Proteobacteria	822	Open in IMG/M
3300010326\|Ga0134065_10142178	All Organisms → cellular organisms → Bacteria → Proteobacteria	831	Open in IMG/M
3300010329\|Ga0134111_10262186	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300010336\|Ga0134071_10696211	All Organisms → cellular organisms → Bacteria → Proteobacteria	537	Open in IMG/M
3300010359\|Ga0126376_11971196	All Organisms → cellular organisms → Bacteria → Proteobacteria	625	Open in IMG/M
3300010360\|Ga0126372_10610589	All Organisms → cellular organisms → Bacteria → Proteobacteria	1048	Open in IMG/M
3300010360\|Ga0126372_13107476	All Organisms → cellular organisms → Bacteria → Proteobacteria	515	Open in IMG/M
3300010398\|Ga0126383_12004406	All Organisms → cellular organisms → Bacteria → Proteobacteria	666	Open in IMG/M
3300012153\|Ga0153980_1037227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	945	Open in IMG/M
3300012189\|Ga0137388_11539535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	602	Open in IMG/M
3300012202\|Ga0137363_11715852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	520	Open in IMG/M
3300012204\|Ga0137374_10205684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1691	Open in IMG/M
3300012205\|Ga0137362_10917939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia → unclassified Afipia → Afipia sp. 1NLS2	747	Open in IMG/M
3300012206\|Ga0137380_11699913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	515	Open in IMG/M
3300012207\|Ga0137381_11386070	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300012208\|Ga0137376_11729268	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	516	Open in IMG/M
3300012349\|Ga0137387_10399780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	996	Open in IMG/M
3300012350\|Ga0137372_10740831	All Organisms → cellular organisms → Bacteria → Proteobacteria	709	Open in IMG/M
3300012361\|Ga0137360_10338563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1257	Open in IMG/M
3300012362\|Ga0137361_11458455	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	607	Open in IMG/M
3300012363\|Ga0137390_11476975	All Organisms → cellular organisms → Bacteria → Proteobacteria	621	Open in IMG/M
3300012930\|Ga0137407_11080615	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	760	Open in IMG/M
3300012948\|Ga0126375_11727924	All Organisms → cellular organisms → Bacteria → Proteobacteria	543	Open in IMG/M
3300016270\|Ga0182036_11704939	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	532	Open in IMG/M
3300016294\|Ga0182041_10690969	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	904	Open in IMG/M
3300016319\|Ga0182033_11734932	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	566	Open in IMG/M
3300016371\|Ga0182034_11044524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	707	Open in IMG/M
3300016404\|Ga0182037_10221235	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1481	Open in IMG/M
3300021560\|Ga0126371_10306041	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1717	Open in IMG/M
3300026547\|Ga0209156_10349553	All Organisms → cellular organisms → Bacteria → Proteobacteria	640	Open in IMG/M
3300026551\|Ga0209648_10191906	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1569	Open in IMG/M
3300026551\|Ga0209648_10345899	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1026	Open in IMG/M
3300026551\|Ga0209648_10432997	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	832	Open in IMG/M
3300027882\|Ga0209590_10654596	All Organisms → cellular organisms → Bacteria → Proteobacteria	674	Open in IMG/M
3300031546\|Ga0318538_10704898	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300031561\|Ga0318528_10130111	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1334	Open in IMG/M
3300031572\|Ga0318515_10104013	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1491	Open in IMG/M
3300031573\|Ga0310915_10608081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300031640\|Ga0318555_10310692	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	853	Open in IMG/M
3300031679\|Ga0318561_10717561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	550	Open in IMG/M
3300031723\|Ga0318493_10768678	All Organisms → cellular organisms → Bacteria → Proteobacteria	542	Open in IMG/M
3300031770\|Ga0318521_10367400	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	854	Open in IMG/M
3300031770\|Ga0318521_10930971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	531	Open in IMG/M
3300031771\|Ga0318546_10424652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	929	Open in IMG/M
3300031780\|Ga0318508_1142990	All Organisms → cellular organisms → Bacteria → Proteobacteria	677	Open in IMG/M
3300031782\|Ga0318552_10108425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1375	Open in IMG/M
3300031796\|Ga0318576_10016585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2845	Open in IMG/M
3300031797\|Ga0318550_10233295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	892	Open in IMG/M
3300031797\|Ga0318550_10406030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	659	Open in IMG/M
3300031805\|Ga0318497_10502900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	679	Open in IMG/M
3300031805\|Ga0318497_10776655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	537	Open in IMG/M
3300031819\|Ga0318568_10145845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1444	Open in IMG/M
3300031819\|Ga0318568_10154779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1402	Open in IMG/M
3300031833\|Ga0310917_10532911	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	798	Open in IMG/M
3300031833\|Ga0310917_10697527	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	687	Open in IMG/M
3300031879\|Ga0306919_10250097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1333	Open in IMG/M
3300031897\|Ga0318520_10178288	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1245	Open in IMG/M
3300031897\|Ga0318520_10867826	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	567	Open in IMG/M
3300031910\|Ga0306923_10224729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	2147	Open in IMG/M
3300031910\|Ga0306923_12293950	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	538	Open in IMG/M
3300031946\|Ga0310910_10721214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	787	Open in IMG/M
3300031947\|Ga0310909_10155363	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1883	Open in IMG/M
3300031947\|Ga0310909_11124615	All Organisms → cellular organisms → Bacteria → Proteobacteria	637	Open in IMG/M
3300031954\|Ga0306926_11011435	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	988	Open in IMG/M
3300031959\|Ga0318530_10082388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1260	Open in IMG/M
3300032010\|Ga0318569_10577505	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	523	Open in IMG/M
3300032035\|Ga0310911_10568684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	657	Open in IMG/M
3300032043\|Ga0318556_10432531	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	688	Open in IMG/M
3300032055\|Ga0318575_10426726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	673	Open in IMG/M
3300032055\|Ga0318575_10562738	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	578	Open in IMG/M
3300032060\|Ga0318505_10016652	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2785	Open in IMG/M
3300032076\|Ga0306924_10054158	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4437	Open in IMG/M
3300032076\|Ga0306924_10664533	All Organisms → cellular organisms → Bacteria → Proteobacteria	1173	Open in IMG/M
3300032094\|Ga0318540_10653880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	506	Open in IMG/M
3300033289\|Ga0310914_10240881	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1623	Open in IMG/M
3300033289\|Ga0310914_11433776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	593	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.17%
Host-Associated	Host-Associated	1.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.17%
Plants	Host-Associated → Plants	0.92%
Fungi	Host-Associated → Fungi	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	98.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%
Mycelium	Host-Associated → Fungi → Mycelium	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.99%
Loam	Environmental → Terrestrial → Soil → Loam	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	48.62%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	34.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.34%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	35.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.60%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	11.01%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.34%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.83%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.92%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.92%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000793	Forest soil microbial communities from Amazon forest - 2010 replicate II A001	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010325	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_0_1 metaG	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010329	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_11112015	Environmental	Open in IMG/M
3300010336	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09082015	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012153	Attine ant fungus gardens microbial communities from Georgia, USA - TSGA064 MetaG	Host-Associated	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012349	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Sage2_R_115_16 metaG	Environmental	Open in IMG/M
3300012350	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026547	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124 (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_101253641	3300000597	Forest Soil	MTKETLMSPEIDKRIPAALLILRFFLAIFLLQWSIEKLILPDAAARIAPSFYGVTLPVEG
AF_2010_repII_A001DRAFT_100901631	3300000793	Forest Soil	MSPEFDNRIPAALLVLRFFLGTFLLQWSIEKLILPDAAARIASNFYGVTLPVEGSY
JGI25616J43925_101322181	3300002917	Grasslands Soil	MSPEHDKRIPAALLILRFFLAIFLLQWSIEKLILPNAAAGIARNFYGV
Ga0066398_100228073	3300004268	Tropical Forest Soil	MPSKIDRRIPAALLILRFFLAIFLLQWSIEKLILPDAAVRIASNFYGVTLPAPASYALGVAELILSL
Ga0066388_1011607972	3300005332	Tropical Forest Soil	MADATDKTAALALLILRFFLGIFLLQWSIEKLILPASAIRIAQN
Ga0066388_1014619361	3300005332	Tropical Forest Soil	MADAIDKTAALALLILRFFLGIFLLQWSIEKLILPASAIRIAQN
Ga0066388_1067882762	3300005332	Tropical Forest Soil	MSPEFDKRVPAALLVLRFFLGTFLLQWSIEKLILPDAAARIASNFYGVT
Ga0066388_1072690762	3300005332	Tropical Forest Soil	MTKETLMSPEFDKRIPAALLILRFFLAIFLLQWSIEKLILPDAAARIARSFYGVTLRWRDRTLWVLLN*
Ga0070709_111191651	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MHGESDRQVAAGLLILRFFLGIFLLQWSIEKLILPTATESIARGFYNVTLPAG
Ga0066905_1015519361	3300005713	Tropical Forest Soil	MTKETLMSPEFDKRIPAALLVLRFFLATFLLQWSIEKLILPDAAARIASNFY
Ga0066903_1007604053	3300005764	Tropical Forest Soil	MSPELDKRIPLALLVLRVFLAIFLLQWSIEKLILPSAAASIARNFYGVTLPASGSYVLGIAELVLS
Ga0066903_1062110632	3300005764	Tropical Forest Soil	MSPEIDKSIPAALLILRFFLAIFLLQWSIEKLILPDAAARIARSFYG
Ga0070717_113240841	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MSPEFDKRIPAALLVLRFFLGTFLLQWSIEKLILPGATARIASNFY
Ga0066659_101141905	3300006797	Soil	MSPEKRIPAALLILRFFLAIFLLQWSIEKLFLPDAAARIARSFYGVTL
Ga0075435_1006562214	3300007076	Populus Rhizosphere	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDATTRIANNFYGVTL
Ga0099791_106916672	3300007255	Vadose Zone Soil	MSPQIDRRIPAALLILRFFLGIFLLQWSIEKLILPDAAARIASSFYGVMLPASASYLL
Ga0099829_103348184	3300009038	Vadose Zone Soil	MTKETPMSPEIDKRIPAALFILRFFLAIFLLQWSIEKLILPDAAARIARGFY
Ga0099828_108737783	3300009089	Vadose Zone Soil	MSPEIDRRIPAALFILRFFLAVFLLQWSIEKLILPDAAERIARGFYGVTLPVQASYALG
Ga0126374_103564131	3300009792	Tropical Forest Soil	MPSKIDRRIPAALLILRFFLAIFLLQWSIEKLILPDAAARIASSFY
Ga0126374_118852672	3300009792	Tropical Forest Soil	MLPEIDRRIPAALLILRFFLAIFLLQWSIEKLILPDAAARIATNFYGATLPAPASYALG
Ga0126313_109322361	3300009840	Serpentine Soil	MLPATDPRIATALLILRFFLGMFLLQWAIEKLFLPSATIRIAQNFYGL
Ga0126384_114712463	3300010046	Tropical Forest Soil	MLPEIDRRIPAALFILRFFLAVFLLQWSIEKLILPDAAARIASNFYGVT
Ga0126382_104635913	3300010047	Tropical Forest Soil	MTKEAPMSPEIDNRIPAALLILRFSLAIFLLQWSIEKLILPEAAQRIAS
Ga0126382_116659033	3300010047	Tropical Forest Soil	MSPELDKRIPAALLIVRLFLGTFLLQWSIEKLILPDAAARIANNFY
Ga0126382_118312001	3300010047	Tropical Forest Soil	MTKETLMSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYSVT
Ga0126373_102223961	3300010048	Tropical Forest Soil	MTKETLMSPEFDKRAPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGVTLPV
Ga0126373_118495123	3300010048	Tropical Forest Soil	MTKETLMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIASNFYGVTLIAPASYALGVGELILSL
Ga0126373_118950981	3300010048	Tropical Forest Soil	MSPEFDKRVPAALLVLRFFLGTFLLQWSIEKLILPDAAARIASNFYGVTLPVGGSYALGVGELIVSLALLL
Ga0126373_121926551	3300010048	Tropical Forest Soil	MTKETLMSPEFDNRIPAALLILRFFVGTFLLQWSIEKLILPDAAARIASNFYGV
Ga0134064_101428933	3300010325	Grasslands Soil	MTKEVLLMSPEKRIPAALLILRFFLAIFLLQWSIEKLFLPDAAARIARSFYGVTLP
Ga0134065_101421783	3300010326	Grasslands Soil	MTKEVLLMSPEKRIPAALLILRFFLAIFLLQWSIEKLFLPDAAARIARSFYGVTL
Ga0134111_102621861	3300010329	Grasslands Soil	MTKEVLLMSPEKRIPAALLILRFFLAIFLLQWSIEKLFLPDAAARIARSFYGVTLPVEASYALGIAELIVSL
Ga0134071_106962112	3300010336	Grasslands Soil	MTKEVLLMSPEKRIPAALLILRFFLAIFLLQWSIEKLFLPDAAARIARSFYGVTLPVEASYALGIAELIV
Ga0126376_119711963	3300010359	Tropical Forest Soil	MSPEFDKRVPAALLVLRFFLGTFLLQWSIEKLILPDAAARIASNFYGVTLPVGGSYAL
Ga0126372_106105893	3300010360	Tropical Forest Soil	MTKETLMSPELDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGV
Ga0126372_131074761	3300010360	Tropical Forest Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDATTRIANNFYGVTLPVKGSHALGIAELIVSLALL
Ga0126383_120044061	3300010398	Tropical Forest Soil	MTKETLMSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLPVG
Ga0153980_10372271	3300012153	Attine Ant Fungus Gardens	MSPELDKRIPAALLILRFFLAIFLLQWSIEKLILPNAAAGIARNFYGVTLAVPA
Ga0137388_115395351	3300012189	Vadose Zone Soil	MTRETPMSPELDKRIPAALLILRFFLGTFLLQWSIEKLILPNAAARIASNFYVVTLPAAGSYA
Ga0137363_117158522	3300012202	Vadose Zone Soil	MPPQFDKRMPAALLILRFFLAIFLMQWSIEKLILPDAASRIAHGFYGVTLPAQASYALGV
Ga0137374_102056844	3300012204	Vadose Zone Soil	MAPEIDRRIPAALLILRFFLAIFLLQWSVEKLILPDAAARIASNFYGVTPPAPASYALGVAE
Ga0137362_109179391	3300012205	Vadose Zone Soil	MSPQIDRRIPAGLLILRFFLGIFLLQWSIEKLILPDAAARIASSFYGVMLPASASYLLGVAELILSLAL
Ga0137380_116999131	3300012206	Vadose Zone Soil	MVPATDQRIAAALLILRFFLGMFLLQWSVEKLFLPGATIRIAQNF
Ga0137381_113860701	3300012207	Vadose Zone Soil	MTKEVLLMSPEVEKRIPAALLILRFFLAIFLLQWSIEKLFLPDAAARIARSFYGVTL
Ga0137376_117292682	3300012208	Vadose Zone Soil	MTKETPMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIAGNFYGVTLTAPA
Ga0137387_103997803	3300012349	Vadose Zone Soil	MTKETPMPPELDKRIPAALLILRFFLAIFLLQWSIEKLILPDAAARIASSFYGVMLPVSA
Ga0137372_107408312	3300012350	Vadose Zone Soil	MTKETLMSPELDKRIPAALLILRFFLAIFLLQWSIEKLILPNAAAGIARNPQRHAG*
Ga0137360_103385634	3300012361	Vadose Zone Soil	MSPEIDRRIPAALLILRFFLAIFLLQWSIEKLMLPDAAARIASGFYGLTLPA
Ga0137361_114584551	3300012362	Vadose Zone Soil	MSPEIDRRIPAALLILRFFLGIFLLQWSIEKLILPNAAAGIARNFYGVTLAVPASYALGTAELILSLAATSHAPDLRSSKTG*
Ga0137390_114769752	3300012363	Vadose Zone Soil	MTRETPMSPELDKRIPAALLILRFFLATFLLQWSIEKLILPGAAARIASNFYGVTLPVAGSYALG
Ga0137407_110806151	3300012930	Vadose Zone Soil	LTKETLMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIASNF
Ga0126375_117279241	3300012948	Tropical Forest Soil	MTKETLMSPEFDKRIPAALLILRFFLAIFLLQWSIEKLILPDAAARIARSFYGVTL
Ga0182036_117049391	3300016270	Soil	MSPEFDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGVTLPVEGSY
Ga0182041_106909691	3300016294	Soil	MSPEFDKRISAALLILRFFLATFLLQWSIEKLILPDAAARIASNFY
Ga0182033_117349322	3300016319	Soil	MTKETLMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPGATARIA
Ga0182034_110445243	3300016371	Soil	MSPEFDKRVPAALLILRFFLGTFLLQWSIEKLILPGATARIAGNFYGV
Ga0182037_102212354	3300016404	Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLPVEGSYSL
Ga0126371_103060414	3300021560	Tropical Forest Soil	MSPEFDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIAGNFYGVTLLVWASYALVIAELIVSLALLVGFYRTISYGLSLLI
Ga0209156_103495531	3300026547	Soil	MSPEKRIPAALLILRFFLAIFLLQWSIEKLFLPDAAARIARSFYGVTLPVEASYALGIDELI
Ga0209648_101919063	3300026551	Grasslands Soil	MSPEIDRRIPAALLILRFFLGIFLLQWSIEKLILPNAAAGIARNFYGVTLAVPASYALGTAELILSLAATSHAPDLRSSKTG
Ga0209648_103458993	3300026551	Grasslands Soil	MPPEIDRRIPAALFIQRFFLAIFLLQWSIEKLILPDAAARIASNFYGVTLAVPASYALGIAELIL
Ga0209648_104329973	3300026551	Grasslands Soil	MSPELDKRIPAALLILRFFLATFLLQWSIEKLILPGAAARIASNFYGVTLPVAGSYALGI
Ga0209590_106545962	3300027882	Vadose Zone Soil	MWSEIDRRIPAALLILRFFLAIFLLQWSIEKLILPDAAARIALNFYGVPLAV
Ga0318538_107048981	3300031546	Soil	MTKETLMSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLPVEGSYSL
Ga0318528_101301111	3300031561	Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTL
Ga0318515_101040131	3300031572	Soil	MSPEFDKRVPAALLVLRFFLGTFLLQWSIEKLILPGATARIASNFYGVTLPMEGSYALGIAE
Ga0310915_106080811	3300031573	Soil	MSPEFDKRISAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLP
Ga0318555_103106921	3300031640	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIANNFYGVTLPAAGSYALGI
Ga0318561_107175611	3300031679	Soil	MSPELDKRIPAALLILRFFLAIFLLQWSVEKLILPDAAARIASNFYGVTLPAPASYALGVAELILSLA
Ga0318493_107686781	3300031723	Soil	MTKETLMSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIAGSFYGVTLPVAGSYALGIAE
Ga0318509_103988741	3300031768	Soil	MSPEFDKRISAALLILRFFLATFLLQWSIEKLILPDAAARIASN
Ga0318521_103674001	3300031770	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIANNFYGVTLPV
Ga0318521_109309711	3300031770	Soil	MSPEFDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGVTLPVEGSYALGIAELIVSLA
Ga0318546_104246523	3300031771	Soil	MSPELDKRIPAALLILRFFLAIFLLQWSVEKLILPDAAARIASNFYGVTLPAPASYALGVAELIL
Ga0318508_11429901	3300031780	Soil	MSPEFDKRIPAALFILRFFLGTFLLQWSIEKLILPDAAARIAGNFYGVTLS
Ga0318552_101084251	3300031782	Soil	MSPEFDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGVT
Ga0318576_100165855	3300031796	Soil	MSPEFDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGVTLPVEGSYALGIAE
Ga0318550_102332953	3300031797	Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLPVEGSYSLGIAELILS
Ga0318550_104060301	3300031797	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIASNFYGVTLPAAGSYTLGIAELIVS
Ga0318497_105029001	3300031805	Soil	MTKETLMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIASNFYGVTLPVGASYALG
Ga0318497_107766552	3300031805	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIANNFYGVTLPAEG
Ga0318568_101458454	3300031819	Soil	MSPELDKRVPLALLILRVFLAIFLLQWSIEKLIMPNAAASIARNFYGVTLPVSGSYALGVAELIL
Ga0318568_101547794	3300031819	Soil	MSPEFDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGVTLPVEGSYALGVGE
Ga0310917_105329113	3300031833	Soil	MSPEFDKRVPAALLILRFFLGTFLLQWSIEKLILPGATARIAGNFYGVTL
Ga0310917_106975273	3300031833	Soil	MTKETLMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIAGSFYGVTL
Ga0306919_102500971	3300031879	Soil	MTKVTLMSPEFDKRIPAALFILRFFLGTFLLQWSIEKLILPDAAARIAGN
Ga0318522_100952621	3300031894	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIATN
Ga0318520_101782881	3300031897	Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLP
Ga0318520_108678263	3300031897	Soil	MTKETLMSPEFDNRVPAALLILRFFLGTFLLQWSIEKLILPGATARIASNFYGVTLPVEGSYALG
Ga0306923_102247291	3300031910	Soil	MSPEFDKRVPAALLILRFFLATFLLQWSIEKLILPDAAARIAGNFYGVTLPVAGSYALGVAELIVS
Ga0306923_104387404	3300031910	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIAGS
Ga0306923_122939502	3300031910	Soil	MSPELDKRIPAALLILRFFLAIFLLQWSVEKLILPDAAARIASNFYGVTLPVAGSYALGVAELIV
Ga0310910_107212143	3300031946	Soil	MSPEFDKRVPAALLILRFFLGTFLLQWSIEKLILPGATARIAGNFYGVTLPVEG
Ga0310909_101553631	3300031947	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIASN
Ga0310909_111246153	3300031947	Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDATTRIANNFYGVTLPVKGSHALGIAELI
Ga0306926_110114351	3300031954	Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDAAARIASNFYGVTLPVGGSYALGVAELSDDQ
Ga0318530_100823884	3300031959	Soil	MSPELDKRVPLALLILRVFLAIFLLQWSIEKLIMPNAAASIARNFYGVTLPVS
Ga0318569_105775052	3300032010	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIANNFYGVTLPAAGSYALG
Ga0310911_105686841	3300032035	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIANNFYGVTLPVAGSYALGIAELIV
Ga0318556_104325313	3300032043	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIANNFY
Ga0318556_104866201	3300032043	Soil	MSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIANN
Ga0318575_104267261	3300032055	Soil	MSPELDKRVPLALLILRVFLAIFLLQWSIEKLIMPNAAASIARNFYGVTLPVSGSYALGVAELILSLALLF
Ga0318575_105627381	3300032055	Soil	MTKETLMSPEFDKRVPAALLILRFFLGTFLLQWSIEKLILPGAIARIAGNFY
Ga0318505_100166521	3300032060	Soil	MSPELDKRVPLALLILRVFLAIFLLQWSIEKLIMPNAAASIARNFYGVTLPVSGSYALGVAE
Ga0306924_100541581	3300032076	Soil	MSPELDKRIPAALLILRFFLAIFLLQWSVEKLILPDAAARIASNFYGVTLPAPA
Ga0306924_106645334	3300032076	Soil	MSPEFDKRIPAALLILRFFLATFLLQWSIEKLILPDATTRIANNFYGVTLPVKGSHALGIAELIVSLALLV
Ga0318540_106538801	3300032094	Soil	MTKETLMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPGATARIAGNFYGVTLPVGGSYSLG
Ga0310914_102408811	3300033289	Soil	MSPEFDKRVPAALLILRFFLATFLLQWSIEKLILPDAAARIAGNFYGVTL
Ga0310914_114337762	3300033289	Soil	MTKETLMSPEFDKRIPAALLILRFFLGTFLLQWSIEKLILPDAAARIAGSFYGVT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F088581

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences