Metagenome / Metatranscriptome Family F088513

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F088513
Family Type	Metagenome / Metatranscriptome
Number of Sequences	109
Average Sequence Length	53 residues
Representative Sequence	ERSPAKTDYLEFEGRPHLHMVALDWQEVAAAIDSWLDGVLDAPVGATQQAS
Number of Associated Samples	84
Number of Associated Scaffolds	109

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.92 %
% of genes near scaffold ends (potentially truncated)	99.08 %
% of genes from short scaffolds (< 2000 bps)	97.25 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (94.495 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (17.431 % of family members)
Environment Ontology (ENVO)	Unclassified (21.101 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 27.85% β-sheet: 0.00% Coil/Unstructured: 72.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 109 Family Scaffolds
PF00106	adh_short	24.77
PF13561	adh_short_C2	7.34
PF13474	SnoaL_3	7.34
PF12051	DUF3533	3.67
PF03625	DUF302	3.67
PF01625	PMSR	2.75
PF12850	Metallophos_2	1.83
PF13470	PIN_3	0.92
PF06441	EHN	0.92
PF00196	GerE	0.92
PF10944	DUF2630	0.92
PF12680	SnoaL_2	0.92
PF06902	Fer4_19	0.92
PF00903	Glyoxalase	0.92
PF16363	GDP_Man_Dehyd	0.92
PF08309	LVIVD	0.92
PF03595	SLAC1	0.92
PF01594	AI-2E_transport	0.92
PF10137	TIR-like	0.92
PF02151	UVR	0.92
PF10282	Lactonase	0.92
PF08352	oligo_HPY	0.92
PF00999	Na_H_Exchanger	0.92
PF11139	SfLAP	0.92
PF13417	GST_N_3	0.92
PF06772	LtrA	0.92
PF03358	FMN_red	0.92
PF00561	Abhydrolase_1	0.92

COG ID	Name	Functional Category	% Frequency in 109 Family Scaffolds
COG3439	Uncharacterized conserved protein, DUF302 family	Function unknown [S]	3.67
COG0225	Peptide methionine sulfoxide reductase MsrA	Posttranslational modification, protein turnover, chaperones [O]	2.75
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.92
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.92
COG0596	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold	Coenzyme transport and metabolism [H]	0.92
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.92
COG1275	Tellurite resistance protein TehA and related permeases	Defense mechanisms [V]	0.92
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.92
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.92
COG4292	Low temperature requirement protein LtrA (function unknown)	Function unknown [S]	0.92
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.92
COG5276	Uncharacterized secreted protein, contains LVIVD repeats, choice-of-anchor domain	Function unknown [S]	0.92

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	94.50 %
Unclassified	root	N/A	5.50 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	58.72 %
Unclassified	root	N/A	5.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	55.96 %
Unclassified	root	N/A	5.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	37.61 %
unclassified Actinobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria	5.50 %
Unclassified	root	N/A	5.50 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	3.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	32.11 %
Unclassified	root	N/A	5.50 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	2.75 %
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	2.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Pseudonocardiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales	0.92 %
unclassified Thermoleophilia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia	0.92 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.11 %
Unclassified	root	N/A	5.50 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	2.75 %
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	2.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Pseudonocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae	0.92 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.92 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.11 %
Unclassified	root	N/A	5.50 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	2.75 %
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	2.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Pseudonocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia	0.92 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.92 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Name	Rank	Taxonomy	Distribution
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	32.11 %
Unclassified	root	N/A	5.50 %
Actinobacteria bacterium 13_1_20CM_4_69_9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	2.75 %
Actinobacteria bacterium SCGC AG-212-D09	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	2.75 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	2.75 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	1.83 %
Pseudonocardia acaciae	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acaciae	0.92 %
Thermoleophilia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	0.92 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.92 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	0.92 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004153\|Ga0063455_101011889	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300005093\|Ga0062594_101043115	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300005177\|Ga0066690_10866883	All Organisms → cellular organisms → Bacteria	580	Open in IMG/M
3300005329\|Ga0070683_100195401	All Organisms → cellular organisms → Bacteria	1921	Open in IMG/M
3300005332\|Ga0066388_106623841	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	584	Open in IMG/M
3300005332\|Ga0066388_106948883	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300005441\|Ga0070700_100526318	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	914	Open in IMG/M
3300005454\|Ga0066687_10166659	All Organisms → cellular organisms → Bacteria	1178	Open in IMG/M
3300005454\|Ga0066687_10307075	All Organisms → cellular organisms → Bacteria	900	Open in IMG/M
3300005518\|Ga0070699_101241263	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300005552\|Ga0066701_10701716	All Organisms → cellular organisms → Bacteria	608	Open in IMG/M
3300005764\|Ga0066903_104175950	Not Available	773	Open in IMG/M
3300005764\|Ga0066903_104470829	All Organisms → cellular organisms → Bacteria	746	Open in IMG/M
3300005764\|Ga0066903_104816669	All Organisms → cellular organisms → Bacteria	717	Open in IMG/M
3300005764\|Ga0066903_104918607	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300005764\|Ga0066903_107097142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	580	Open in IMG/M
3300005764\|Ga0066903_108499341	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300005887\|Ga0075292_1044656	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	632	Open in IMG/M
3300006031\|Ga0066651_10068323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1712	Open in IMG/M
3300006046\|Ga0066652_101109045	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300006046\|Ga0066652_101508976	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300006046\|Ga0066652_101622352	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	593	Open in IMG/M
3300006804\|Ga0079221_11761051	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300006806\|Ga0079220_11618905	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	562	Open in IMG/M
3300006893\|Ga0073928_10353673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1087	Open in IMG/M
3300007265\|Ga0099794_10609528	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	578	Open in IMG/M
3300009137\|Ga0066709_100889892	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1297	Open in IMG/M
3300009840\|Ga0126313_10845211	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	746	Open in IMG/M
3300010038\|Ga0126315_10887898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	592	Open in IMG/M
3300010366\|Ga0126379_12287706	All Organisms → cellular organisms → Bacteria	641	Open in IMG/M
3300010862\|Ga0126348_1275306	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	536	Open in IMG/M
3300011269\|Ga0137392_10544800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	964	Open in IMG/M
3300011270\|Ga0137391_11311468	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	571	Open in IMG/M
3300012014\|Ga0120159_1193694	Not Available	545	Open in IMG/M
3300012199\|Ga0137383_10271827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1241	Open in IMG/M
3300012199\|Ga0137383_10960514	All Organisms → cellular organisms → Bacteria	623	Open in IMG/M
3300012200\|Ga0137382_10806420	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	675	Open in IMG/M
3300012205\|Ga0137362_11510778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	558	Open in IMG/M
3300012211\|Ga0137377_11653434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	563	Open in IMG/M
3300012362\|Ga0137361_11618903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	568	Open in IMG/M
3300015374\|Ga0132255_103160294	All Organisms → cellular organisms → Bacteria → Terrabacteria group	702	Open in IMG/M
3300016294\|Ga0182041_11453556	All Organisms → cellular organisms → Bacteria	630	Open in IMG/M
3300016445\|Ga0182038_11780242	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300017959\|Ga0187779_10047857	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	2490	Open in IMG/M
3300017959\|Ga0187779_11309580	All Organisms → cellular organisms → Bacteria	513	Open in IMG/M
3300017961\|Ga0187778_10089135	All Organisms → cellular organisms → Bacteria	1909	Open in IMG/M
3300017961\|Ga0187778_10261829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1112	Open in IMG/M
3300017961\|Ga0187778_11243733	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	523	Open in IMG/M
3300017966\|Ga0187776_10011410	All Organisms → cellular organisms → Bacteria	4762	Open in IMG/M
3300017966\|Ga0187776_11103686	All Organisms → cellular organisms → Bacteria	589	Open in IMG/M
3300017973\|Ga0187780_10125712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1773	Open in IMG/M
3300017973\|Ga0187780_10749584	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	705	Open in IMG/M
3300017974\|Ga0187777_10121411	All Organisms → cellular organisms → Bacteria → Proteobacteria	1730	Open in IMG/M
3300017974\|Ga0187777_10173994	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → unclassified Thermoleophilia → Thermoleophilia bacterium	1444	Open in IMG/M
3300017974\|Ga0187777_11309648	Not Available	532	Open in IMG/M
3300018029\|Ga0187787_10246486	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300018029\|Ga0187787_10383487	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	550	Open in IMG/M
3300018058\|Ga0187766_10670345	All Organisms → cellular organisms → Bacteria	714	Open in IMG/M
3300018064\|Ga0187773_10118730	All Organisms → cellular organisms → Bacteria → Proteobacteria	1327	Open in IMG/M
3300018085\|Ga0187772_10543424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	822	Open in IMG/M
3300018086\|Ga0187769_10522167	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300018433\|Ga0066667_11853332	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	548	Open in IMG/M
3300018481\|Ga0190271_12789956	Not Available	587	Open in IMG/M
3300021362\|Ga0213882_10169564	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	897	Open in IMG/M
3300021362\|Ga0213882_10191297	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	843	Open in IMG/M
3300021374\|Ga0213881_10170682	All Organisms → cellular organisms → Bacteria	956	Open in IMG/M
3300021374\|Ga0213881_10335236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300021377\|Ga0213874_10033260	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1502	Open in IMG/M
3300021377\|Ga0213874_10060839	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1182	Open in IMG/M
3300021388\|Ga0213875_10061172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1761	Open in IMG/M
3300021388\|Ga0213875_10533385	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	565	Open in IMG/M
3300024055\|Ga0247794_10334292	All Organisms → cellular organisms → Bacteria → Terrabacteria group	516	Open in IMG/M
3300025915\|Ga0207693_10979716	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium 13_1_20CM_4_69_9	646	Open in IMG/M
3300026310\|Ga0209239_1360537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	509	Open in IMG/M
3300026910\|Ga0207840_1021133	All Organisms → cellular organisms → Bacteria → Acidobacteria	647	Open in IMG/M
3300028716\|Ga0307311_10140175	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	692	Open in IMG/M
3300028807\|Ga0307305_10576923	Not Available	501	Open in IMG/M
3300028819\|Ga0307296_10297671	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	880	Open in IMG/M
3300029943\|Ga0311340_10080621	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3676	Open in IMG/M
3300031543\|Ga0318516_10098142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1653	Open in IMG/M
3300031544\|Ga0318534_10136158	All Organisms → cellular organisms → Bacteria	1415	Open in IMG/M
3300031545\|Ga0318541_10784588	All Organisms → cellular organisms → Bacteria	531	Open in IMG/M
3300031681\|Ga0318572_10872360	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031723\|Ga0318493_10753887	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	547	Open in IMG/M
3300031724\|Ga0318500_10171986	All Organisms → cellular organisms → Bacteria	1028	Open in IMG/M
3300031770\|Ga0318521_10238805	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1058	Open in IMG/M
3300031770\|Ga0318521_10774842	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300031770\|Ga0318521_10804597	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031771\|Ga0318546_10986910	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	593	Open in IMG/M
3300031796\|Ga0318576_10600897	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	518	Open in IMG/M
3300031799\|Ga0318565_10444267	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	628	Open in IMG/M
3300031805\|Ga0318497_10193744	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1121	Open in IMG/M
3300031821\|Ga0318567_10117845	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300031823\|Ga0307478_10586850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	932	Open in IMG/M
3300031824\|Ga0307413_11139102	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae → Pseudonocardia → Pseudonocardia acaciae	676	Open in IMG/M
3300031831\|Ga0318564_10393995	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	606	Open in IMG/M
3300031845\|Ga0318511_10623040	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300031859\|Ga0318527_10403492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	583	Open in IMG/M
3300031938\|Ga0308175_101960083	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	656	Open in IMG/M
3300032055\|Ga0318575_10422639	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	677	Open in IMG/M
3300032094\|Ga0318540_10627419	Not Available	518	Open in IMG/M
3300032160\|Ga0311301_12595522	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	562	Open in IMG/M
3300032205\|Ga0307472_100876874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	828	Open in IMG/M
3300032261\|Ga0306920_100681459	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1516	Open in IMG/M
3300032261\|Ga0306920_100696949	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1497	Open in IMG/M
3300032893\|Ga0335069_11103890	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → unclassified Actinobacteria → Actinobacteria bacterium SCGC AG-212-D09	874	Open in IMG/M
3300032896\|Ga0335075_10679809	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	995	Open in IMG/M
3300032898\|Ga0335072_11280824	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	644	Open in IMG/M
3300032955\|Ga0335076_11078878	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.50%
Host-Associated	Host-Associated	5.50%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	93.58%
Plants	Host-Associated → Plants	5.50%
Aquatic	Environmental → Aquatic	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	88.99%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	3.67%
Roots	Host-Associated → Plants → Roots	3.67%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.92%
Peat	Environmental → Terrestrial → Peat	0.92%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.92%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.05%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	21.10%
Loam	Environmental → Terrestrial → Soil → Loam	12.84%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Roots → Unclassified	3.67%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	22.94%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	21.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.51%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.26%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.67%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	3.67%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	3.67%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.92%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.92%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.92%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.92%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.43%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	16.51%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.26%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.26%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.34%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.67%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	3.67%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	3.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.75%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.75%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	1.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.83%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.92%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.92%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.92%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost	0.92%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.92%
Rice Paddy Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil	0.92%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.92%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.92%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	0.92%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.92%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.92%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004153	Grasslands soil microbial communities from Hopland, California, USA (version 2)	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005329	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005454	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_136	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005887	Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_80N_403	Environmental	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010862	Boreal forest soil eukaryotic communities from Alaska, USA - C4-4 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012014	Permafrost microbial communities from Nunavut, Canada - A10_80cm_6M	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017961	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_20_MG	Environmental	Open in IMG/M
3300017966	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018029	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_BV01_MP06_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018064	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300021362	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R09	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021377	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7	Host-Associated	Open in IMG/M
3300021388	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8	Host-Associated	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026310	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_2_20cm (SPAdes)	Environmental	Open in IMG/M
3300026910	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 65 (SPAdes)	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028807	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031831	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f20	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M
3300032896	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.4	Environmental	Open in IMG/M
3300032898	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1	Environmental	Open in IMG/M
3300032955	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.5	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0063455_1010118892	3300004153	Soil	AQFKRYERSPAKTDYLEFDGRPHLHMAAPDWQEVAEAIDSWLDGVVEEPEAVTEKVTS*
Ga0062594_1010431151	3300005093	Soil	SPARTEYLEFEGRPHLFVVGEGWEEVAEAIDGWLGKVLAATAGEPA*
Ga0066690_108668832	3300005177	Soil	PAKTDYLEFEGRPHLHMAAADWQEVAAAIDSWLDGVLDAPIAETEETPA*
Ga0070683_1001954011	3300005329	Corn Rhizosphere	KSPARTDYVEFEGRPHLFMVGEGWEEVAAAIDGWLEGVLDAPSEPAASG*
Ga0066388_1066238412	3300005332	Tropical Forest Soil	YEHSPAQTDYLEFEGRPHLHMAADDWEEVATAIDNWLDGVLDASAAAIQKTSA*
Ga0066388_1069488831	3300005332	Tropical Forest Soil	KTDYLEFEGRPHLHMAAPDWEEVADGIEAWFGGVLDAPVADEAGMPAR*
Ga0070700_1005263181	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	PASLSRAQVKKYGRSPAKTDYLEFEGRPHLAMAADGWEEIAAAIDTWVRGVLA*
Ga0066687_101666591	3300005454	Soil	KKYEHSPAKTDYLEFEGRPHLHMVAPGWQEVAAAIDSWLDGVLDAPAVAAEQGVS*
Ga0066687_103070752	3300005454	Soil	PAKTDYLEFEGRPHLHMVAPDWQEVAAEIDGWLDGVLDAPVTTSQQAS*
Ga0070699_1012412632	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	KAQFKRYESSPAKTDYLEFDGRSHLHMAAADWQEVAAAIDSWLDGVLDAPITETKQTHA*
Ga0066701_107017162	3300005552	Soil	KTDYLEFEGRPHLHMAADDWEEVAAAIDGWLDSVLEATHAAEQQAPA*
Ga0066903_1041759501	3300005764	Tropical Forest Soil	YLEFEGRPHLHMVAPDWQEVAAAIDSWLDGVLGAPEPAAQQPT*
Ga0066903_1044708292	3300005764	Tropical Forest Soil	SLSKAQYRRYQRSPAKTDYLEFEGRPHLHMAAPDWEEIAAAIDSWLDGLLGAPIPPS*
Ga0066903_1048166691	3300005764	Tropical Forest Soil	QTDYLEFEGRPHLHMAADDWEEVAVGISGWLDKALDAPIAATQTTTA*
Ga0066903_1049186072	3300005764	Tropical Forest Soil	ASLTKAQYKRYEHSSAQTDYLEFEGRPHLHMAADDWEEVATAIANWLDGVLHASAAARQKTSA*
Ga0066903_1070971421	3300005764	Tropical Forest Soil	TDYLEFEGRPHLHMAADDWEEVAVGISGWLDKALDAPIAATQTTSA*
Ga0066903_1084993412	3300005764	Tropical Forest Soil	TDYLEFEGRPHLHMAADDWEEVAVGISGWLDKALDAPIAASQTTSA*
Ga0075292_10446561	3300005887	Rice Paddy Soil	VPASLSKAQYAKYERSPAQPDYLEFAGRPHLHMVARDWQEVAGAIERWLGGVPDRPAGP*
Ga0066651_100683233	3300006031	Soil	TDYLEFEGRPHLHMAAPDWEEVAAGIDTWLAGRLEASAVSGATR*
Ga0066652_1011090451	3300006046	Soil	TKAQFKRYEKSPAKTDYLEFEGRPHLHMAAPDWEEVAAGIDTWLAGVLQASAVSGAT*
Ga0066652_1015089761	3300006046	Soil	SPAKTDYLEFEGRPHLHMVAPDWQEVAAAVDSWIGGVLDAPVGATQQAS*
Ga0066652_1016223524	3300006046	Soil	KADYLEFDGRPHLHMVAPDWHEVAAAIDSWLDGALDTPIPATEHHS*
Ga0079221_117610511	3300006804	Agricultural Soil	YKRYEKSSAKTDYLEFAGRPHLHMVAPDWHEVAQAIDSWLDGVLDAPLETA*
Ga0079220_116189051	3300006806	Agricultural Soil	AHKRYEKSPAKTDYLEFEGRPHLHMAAPDWQEVAQAIDSWLDGVLDAPLAGAPQATA*
Ga0073928_103536733	3300006893	Iron-Sulfur Acid Spring	EQTEYLEFEGRPHFHMVASDCQEVAAAVDSWLDGVLDAPVAATEQAT*
Ga0099794_106095282	3300007265	Vadose Zone Soil	GADDDNTVPASLAKAQFKRYESSPAKTDYLEFEGRPHLHMAAADWQEVAAAIDSWLDGVLDAPITETEETPA*
Ga0066709_1008898921	3300009137	Grasslands Soil	AKTDYLEFDGRPHLHMAAPDWQDIAEAIDGWLDGVLDAPTT*
Ga0126313_108452112	3300009840	Serpentine Soil	AQHKRYQRSSARTDYVEFEGRPHLFVVGEGWQEVATAIDGWLDGILDAAPAA*
Ga0126315_108878983	3300010038	Serpentine Soil	VARAQYKKYQRSVAKTDYLEFEGRPHLFIVGAGSDEVAAAIDSWLDGVLDAAPAQDGGRRS*
Ga0126379_122877061	3300010366	Tropical Forest Soil	TKAAYKRYEKSPAKTDYLEFEGRPHLHMAAPDWEEVAQAIGGWLGGVLDAPVAEASHATS
Ga0126348_12753062	3300010862	Boreal Forest Soil	VKTDYLEFEGRPHLHMAAPDWEEVAVAIDGWLDGVLDAPEPATQRGADGP*
Ga0137392_105448001	3300011269	Vadose Zone Soil	PAKTDYLEFEGRPHLHMAAADWQEVAAAIDSWLDGVLDAPITETEATHA*
Ga0137391_113114682	3300011270	Vadose Zone Soil	SSPANTDYLEFEGRPHLHMAAADWQEVAAAIDSWLDGVLDAPITETEETPA*
Ga0120159_11936941	3300012014	Permafrost	NTVPASLSKAQVKKYEASSARTDYLEFEGRPHLHMVAADWEEVATGIDGWLDGVLSPA*
Ga0137383_102718273	3300012199	Vadose Zone Soil	ANTDYLEFAGRPHLHMVASDWQEVAAAIDGWLDGILDAPAAG*
Ga0137383_109605143	3300012199	Vadose Zone Soil	YERSPARTDYLELAGRPHLSMVGEGWDEVAASIDSWLDGVLDAPEAATQQVSA*
Ga0137382_108064201	3300012200	Vadose Zone Soil	TVPASLSKARFKRYESSPAKTDYLEFEGRPHLHMAAADWQEVAAAIDSWLDGVLDAPITETEESRA*
Ga0137362_115107781	3300012205	Vadose Zone Soil	AKAQFKRYESSPANTDYLEFEGRPYLHMGAADWEEVAAAIDSWLDGVLDAPITETEETPA
Ga0137377_116534342	3300012211	Vadose Zone Soil	SPAKTDYLEFEGRPHLHMAAADWQEVAAAIDSWLDGVLDAPIAETEETPA*
Ga0137361_116189031	3300012362	Vadose Zone Soil	ASLAKAQFKRYESSPAKTDYLEFEGRPHLHMASADWQEVAAAIDSWLDGVLDAPITETEQTPA*
Ga0132255_1031602941	3300015374	Arabidopsis Rhizosphere	SPAKTEYLEFAGRPHLHMAASDWEEVAQAVDTWIGGVLDADAPIAATEKTRA*
Ga0182041_114535562	3300016294	Soil	PASLAKAQYKRYERSPAKTDYLEFEGRPHLHMVATDWQEVAAAIDSWLDGVLEAPEPTPRKAS
Ga0182038_117802422	3300016445	Soil	DYLEFEGRPHLHMVAPDWQEVAAAIHSWLDGVVGPPVAVTQQAS
Ga0187779_100478575	3300017959	Tropical Peatland	VPASLTKAQYKRYERSPAKTDYLEFEARPHLHMVAPDWPEVAAAIDSWLDGVLDAPVGATQQAS
Ga0187779_113095802	3300017959	Tropical Peatland	YERSPAKTDYLEFEGRPHLHMAASDWQEVATAIDSWLDGVLDAPAGATQQAS
Ga0187778_100891353	3300017961	Tropical Peatland	AQYKRYERSPAKTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGVLDAPVAATQQAS
Ga0187778_102618291	3300017961	Tropical Peatland	TVPASLAKAQYKRYARSAAKTDYLEFEGRPHLHMVAADWQEVAAAIDSWLDGVLDAPEPAAQHAS
Ga0187778_112437332	3300017961	Tropical Peatland	PAKTDYLEFEGRPHLHMVASDWQEVAVAIDSWLDGILDAPVGAPQQAP
Ga0187776_100114101	3300017966	Tropical Peatland	LTKAQYKRYERSPAKTDYLEFEGRPHLHMVASDWQEVAAAIDGWLDGVLEAPEPATQQAS
Ga0187776_111036862	3300017966	Tropical Peatland	VPASVTKAQYKRYERSAAKTDYLEFEGRPHLHMVAPDWQEVAAAVDSWLDGVLDAPDPATQTAS
Ga0187780_101257121	3300017973	Tropical Peatland	TVPASLTKAQYKRYERSPAKTDYLEFEARPHLHMIAPDWPEVAAAIDSWLDGVLDAPVGATQQAS
Ga0187780_107495842	3300017973	Tropical Peatland	YERSPAKTDYLEFEARPHLHMVAPDWQEVAAAIDSWLDGVVDAPVGATQQAS
Ga0187777_101214114	3300017974	Tropical Peatland	VPASLTKAQYKRYERSPAKTDYLEFEARPHLHMIAPDWPEVAAAIDSWLDGVLDAPVGATQQAS
Ga0187777_101739941	3300017974	Tropical Peatland	KSPAKTDYLEFEGRPHFHMVAPDWEEVAEAIDGWLDGVLDAPLKQSEQSRA
Ga0187777_113096481	3300017974	Tropical Peatland	ERSPAKTDYLEFEGRPHLHMVAPDWREVADAIDSWLDGVLEAPEPATQPAS
Ga0187787_102464861	3300018029	Tropical Peatland	HSPAQTDYLEFAGRPHLHMVAPDWQEVAAAIDSWLDGVLDTPIGATQQDS
Ga0187787_103834871	3300018029	Tropical Peatland	VPASLTKAQFNRYERSPAKTDYLEFEGRPHLHMVASDWQEVATAIDSWLAGVLDAPVGATQQAS
Ga0187766_106703452	3300018058	Tropical Peatland	YERSPARTDYLEFEGRPHFHMVAADWQEVAVAVDSWLDGVLDAPVVATEQATR
Ga0187773_101187303	3300018064	Tropical Peatland	ASLTKAQYKRYERSPAKTDYLEFEGRPHLQMVASDWQEVATAIGSWLDGVLDAPVGATQQAS
Ga0187772_105434241	3300018085	Tropical Peatland	KTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGVLDAPVAATQQAS
Ga0187769_105221672	3300018086	Tropical Peatland	AQYKRYERSPAKTDYLEFEGRPHLHMVAPDWQEVAAAIDGWLDGVLDAPVGAQHAS
Ga0066667_118533322	3300018433	Grasslands Soil	PAKTDYLEFEGRPHLHMVAADWQEVAAAIDSWLDGVLDAEPAPAGSVSA
Ga0190271_127899562	3300018481	Soil	ARAQYKKYEHSGARTEYLEFEGRPHLFVVGEGSDEVAAAIDGWLDGVLDQAPAGVGG
Ga0213882_101695641	3300021362	Exposed Rock	RSPARTDYLEFAGRPHFHMVASDWQEVAAAVDSWLDGVLDAPVVAAEQAT
Ga0213882_101912972	3300021362	Exposed Rock	SPAKTDYLEFEGRPHLHMVAVDWQEVASAIDSWLDGVLDAPVAATQQAS
Ga0213881_101706823	3300021374	Exposed Rock	ERSPAKTDYLEFEGRPHLHMVALDWQEVAAAIDSWLDGVLDAPVGATQQAS
Ga0213881_103352361	3300021374	Exposed Rock	SPAKTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGVLDEPLAAAQQAS
Ga0213874_100332601	3300021377	Plant Roots	YKRYEHSQARTDYVEFEGRPHFHMVASDWQEVAEEIDSWLDGVLDEPVSAAEHAS
Ga0213874_100608391	3300021377	Plant Roots	AKAQYKRYERSPARTDYLEFEGRPHLHMVASDWLEVAAAIDSWLDGVLDAREPATEQP
Ga0213875_100611721	3300021388	Plant Roots	YKRSPAKTDYLEFEGRPHLHMVASDWQEVAGAVDSWLDGVLDAPVIAAENAT
Ga0213875_105333851	3300021388	Plant Roots	YNRYERSPARTDYLEFEGRPHFHMVASDWHEVAAAVDGWLDGILDASRVATEQTR
Ga0247794_103342921	3300024055	Soil	TDYIEFAGRPHFHMIAPDWEEVAAAVNGWLAGVLDRPRSAVEAPRA
Ga0207693_109797161	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	AKTDYLEFEGRPHLHMAAADWQEVAAAIDSWLDGVLDAPITETEETR
Ga0209239_13605371	3300026310	Grasslands Soil	PKTDYLEFDGRPHLHMAAPDWEEVAGGIDAWLTSVLESPAVGATR
Ga0207840_10211332	3300026910	Tropical Forest Soil	PASLAKAQYKRYERSPARTDYLEFEGRPHLHMVASDWQEVAAAIDSWLDVPEPAAQQAR
Ga0307311_101401751	3300028716	Soil	LEFEGRPHLHMVAEDWEEVAAAIDGWLGGVLETTKPAAQHASA
Ga0307305_105769232	3300028807	Soil	EFEGRPHLHMAAADWEEVAAGIDGWLDGVLEATKAADQPAPA
Ga0307296_102976711	3300028819	Soil	MLSKAQYKKYERSSAKTDYLEFEGRPHLFVVGDGAEEVAAAIDSWLDGVLDAVTAATA
Ga0311340_100806214	3300029943	Palsa	QYKRYERSAATTDYLEFEGRPHFHMVASDWQEVAAAVDSWLDGVLDAPVAATDHVT
Ga0318516_100981422	3300031543	Soil	PASLTKAQYKRYERSPAKTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGILDAPVGATQQAS
Ga0318534_101361583	3300031544	Soil	KRYERSPAKTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGVLDEPSGQQGS
Ga0318541_107845882	3300031545	Soil	SPARTDYLEFAGRPHFHMVASDWEEVVAAVDRWLDGVLEAPVVATDQAT
Ga0318572_108723601	3300031681	Soil	YERSPARTDYLEFAGRPHFHMVASDWEEVVAAVDRWLDGVLEAPVVATDQAT
Ga0318493_107538871	3300031723	Soil	LSKAQYKRYERSPAKTDYLEFEGRPHFHMVASDWEEVAEAVDSWLDGVLDEPVAAADQTT
Ga0318500_101719861	3300031724	Soil	TANTDYLEFEGRPHLHMVAPDWQEVASAIDSWLDGVVDAPVTATQQAS
Ga0318521_102388052	3300031770	Soil	YKRYERSTANTDYLEFEGRPHLHMVAPDWQEVASAIDSWLDGVVDAPVSATQQAS
Ga0318521_107748422	3300031770	Soil	TVPASLSKAQYKRYERSPARTDYLEFAGRPHFHMVASDWEEVVAAVDRWLDGVLEAPVVATDQAT
Ga0318521_108045972	3300031770	Soil	RYERSPAQTDKLEFEGRPHLHMAAPCRQEVAVAIGSWLDGVLEAPPAEQAT
Ga0318546_109869101	3300031771	Soil	ASLTKAQYKRYEHSLAKTDYLEFEGRPHLHMVASDWQEVAAAIDSWLDGVLDAPVAATQQAL
Ga0318576_106008972	3300031796	Soil	TDYLEFEGRPHFHMVASDWEEVAAAVDSWLDGVLDEPVAAADQTT
Ga0318565_104442672	3300031799	Soil	KYEHSPAQTDYVEFEGRPHLHMVADDWEEVATGICGWLDGALDAPVAATPTASA
Ga0318497_101937442	3300031805	Soil	YERSTANTDYLEFEGRPHLHMVAPDWQEVASAIDSWLDGVVDAPVTATQQAS
Ga0318567_101178451	3300031821	Soil	SLAKTDYLEFEGRPHLHMVASDWQEVAAAVDSWLDGVLDEPVAAADQTT
Ga0307478_105868501	3300031823	Hardwood Forest Soil	ERSPARTDYLEFQGRPHFHMVASDWQEVAAAVDSWLDGVLDAPVGATEHAT
Ga0307413_111391021	3300031824	Rhizosphere	EHSPAKTEYLEFEGRPHLFMVGEGSDDVAAAIDSWLDGVLDALPAQAGG
Ga0318564_103939952	3300031831	Soil	PTKTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGILDAPVGATQQAS
Ga0318511_106230402	3300031845	Soil	YKRYERSPAKTDYLEFEGRPHLHMVASDWEEVAAAVDSWLDGVLDAPVVPTDQSA
Ga0318527_104034922	3300031859	Soil	YKRYERSPAKTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGVLDAPEPAAQQPT
Ga0308175_1019600831	3300031938	Soil	EKSPAQTDYLEFEGRPHLLMVGEGAREVAEAVDGWLDGVLDEQPAAV
Ga0318575_104226391	3300032055	Soil	ARSACIAPWSATPAKTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGILDAPVGATQQAS
Ga0318540_106274192	3300032094	Soil	PAQTDKLEFEGRPHLHMAAPDRQEVAVAIGSWLDGVLEAPPAEQAT
Ga0311301_125955221	3300032160	Peatlands Soil	PASLTKAQFKRYERSPAKTDYVEFEGRPHLHVVASDWQEVAGAIDSWLEGVLDAPVAATQQAS
Ga0307472_1008768742	3300032205	Hardwood Forest Soil	AAQTDYLEFEGRPHLHMAAPDWEEVAAAIDSWLDGVLDAPLETTEQTSA
Ga0306920_1006814593	3300032261	Soil	KRYERSPAKTDYLEFEGRPHLHMVAPDWQEVAAAIHSWLDGVVGPPVAVTQQAS
Ga0306920_1006969491	3300032261	Soil	HTVPPSLTKAQYKRYEHSLAKTDYLEFEGRPHLHMVASDWQEVAAAVDSWLDGVLDAPVAATQQAL
Ga0335069_111038901	3300032893	Soil	EFEGRPHLHMAASDWQEVAQAIDGWLRGVPDASMAEAYQARA
Ga0335075_106798092	3300032896	Soil	TDYLEFAGRPHLHMVAPDWQEVAAAIDSWLDGVLDAPVTAAPQD
Ga0335072_112808242	3300032898	Soil	KAQYKHYEHSAAQTDYLEFEGRPHLHMVAPDWQEVAAAIDSWLDGVLDAPDPATQQA
Ga0335076_110788782	3300032955	Soil	QHKRYERSPAKTDYLEFEGRPHLHMVASDWQEVAAAVDSWLDGVLDSPEAATQQAS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F088513

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences